Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281430 | XP_013463257.1 | 99.095 | 221 | 2 | 0 | 1 | 221 | 1 | 221 | 6.65e-163 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281430 | sp|O23429|VA724_ARATH | 87.838 | 222 | 26 | 1 | 1 | 221 | 1 | 222 | 3.94e-139 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007970 | Msa0281430 | 0.808398 | 3.159196e-50 | -8.615850e-47 |
| Msa0011930 | Msa0281430 | 0.813340 | 2.690008e-51 | -8.615850e-47 |
| Msa0014570 | Msa0281430 | 0.824791 | 6.666487e-54 | -8.615850e-47 |
| Msa0017390 | Msa0281430 | 0.824268 | 8.849868e-54 | -8.615850e-47 |
| Msa0024710 | Msa0281430 | 0.802408 | 5.691646e-49 | -8.615850e-47 |
| Msa0031820 | Msa0281430 | 0.833997 | 3.865591e-56 | -8.615850e-47 |
| Msa0033880 | Msa0281430 | 0.808086 | 3.680245e-50 | -8.615850e-47 |
| Msa0035120 | Msa0281430 | 0.809085 | 2.251859e-50 | -8.615850e-47 |
| Msa0037160 | Msa0281430 | 0.816114 | 6.534394e-52 | -8.615850e-47 |
| Msa0046760 | Msa0281430 | 0.825881 | 3.679788e-54 | -8.615850e-47 |
| Msa0056450 | Msa0281430 | 0.801968 | 7.009360e-49 | -8.615850e-47 |
| Msa0061340 | Msa0281430 | 0.803909 | 2.783643e-49 | -8.615850e-47 |
| Msa0065010 | Msa0281430 | 0.812694 | 3.726389e-51 | -8.615850e-47 |
| Msa0065550 | Msa0281430 | 0.819718 | 1.002731e-52 | -8.615850e-47 |
| Msa0065680 | Msa0281430 | -0.811215 | 7.826444e-51 | -8.615850e-47 |
| Msa0079110 | Msa0281430 | 0.817806 | 2.724525e-52 | -8.615850e-47 |
| Msa0097590 | Msa0281430 | 0.818969 | 1.485357e-52 | -8.615850e-47 |
| Msa0097610 | Msa0281430 | 0.815066 | 1.118127e-51 | -8.615850e-47 |
| Msa0098470 | Msa0281430 | 0.812280 | 4.588937e-51 | -8.615850e-47 |
| Msa0104700 | Msa0281430 | 0.804132 | 2.501839e-49 | -8.615850e-47 |
| Msa0108390 | Msa0281430 | 0.835478 | 1.638996e-56 | -8.615850e-47 |
| Msa0125770 | Msa0281430 | 0.836854 | 7.332902e-57 | -8.615850e-47 |
| Msa0126770 | Msa0281430 | 0.827753 | 1.314516e-54 | -8.615850e-47 |
| Msa0131330 | Msa0281430 | 0.802637 | 5.104722e-49 | -8.615850e-47 |
| Msa0133720 | Msa0281430 | 0.816098 | 6.588051e-52 | -8.615850e-47 |
| Msa0133820 | Msa0281430 | 0.808957 | 2.399266e-50 | -8.615850e-47 |
| Msa0138360 | Msa0281430 | 0.835737 | 1.410070e-56 | -8.615850e-47 |
| Msa0140500 | Msa0281430 | -0.809387 | 1.939986e-50 | -8.615850e-47 |
| Msa0144360 | Msa0281430 | 0.821516 | 3.873396e-53 | -8.615850e-47 |
| Msa0147980 | Msa0281430 | 0.818274 | 2.134922e-52 | -8.615850e-47 |
| Msa0152400 | Msa0281430 | 0.804337 | 2.267352e-49 | -8.615850e-47 |
| Msa0154440 | Msa0281430 | 0.807961 | 3.914563e-50 | -8.615850e-47 |
| Msa0165440 | Msa0281430 | 0.814987 | 1.164343e-51 | -8.615850e-47 |
| Msa0171850 | Msa0281430 | 0.811720 | 6.079327e-51 | -8.615850e-47 |
| Msa0174000 | Msa0281430 | 0.801484 | 8.808995e-49 | -8.615850e-47 |
| Msa0181230 | Msa0281430 | 0.800388 | 1.475361e-48 | -8.615850e-47 |
| Msa0187030 | Msa0281430 | 0.818987 | 1.471139e-52 | -8.615850e-47 |
| Msa0202110 | Msa0281430 | 0.802648 | 5.077110e-49 | -8.615850e-47 |
| Msa0207350 | Msa0281430 | 0.831157 | 1.957558e-55 | -8.615850e-47 |
| Msa0217700 | Msa0281430 | 0.808283 | 3.342711e-50 | -8.615850e-47 |
| Msa0219430 | Msa0281430 | 0.928487 | 2.695508e-92 | -8.615850e-47 |
| Msa0225220 | Msa0281430 | 0.801066 | 1.072788e-48 | -8.615850e-47 |
| Msa0241830 | Msa0281430 | 0.814410 | 1.562578e-51 | -8.615850e-47 |
| Msa0253290 | Msa0281430 | 0.846088 | 2.705102e-59 | -8.615850e-47 |
| Msa0254940 | Msa0281430 | 0.806634 | 7.478921e-50 | -8.615850e-47 |
| Msa0259210 | Msa0281430 | 0.803635 | 3.173702e-49 | -8.615850e-47 |
| Msa0259220 | Msa0281430 | 0.824732 | 6.880907e-54 | -8.615850e-47 |
| Msa0277450 | Msa0281430 | 0.801638 | 8.192874e-49 | -8.615850e-47 |
| Msa0281430 | Msa0292120 | 0.829210 | 5.847010e-55 | -8.615850e-47 |
| Msa0281430 | Msa0296250 | 0.827129 | 1.854735e-54 | -8.615850e-47 |
| Msa0281430 | Msa0296820 | 0.811757 | 5.969097e-51 | -8.615850e-47 |
| Msa0281430 | Msa0300320 | 0.815743 | 7.904720e-52 | -8.615850e-47 |
| Msa0281430 | Msa0300690 | 0.801769 | 7.699451e-49 | -8.615850e-47 |
| Msa0281430 | Msa0317970 | 0.822172 | 2.730350e-53 | -8.615850e-47 |
| Msa0281430 | Msa0320590 | 0.803389 | 3.568958e-49 | -8.615850e-47 |
| Msa0281430 | Msa0320680 | 0.873080 | 1.939987e-67 | -8.615850e-47 |
| Msa0281430 | Msa0322900 | 0.812915 | 3.333469e-51 | -8.615850e-47 |
| Msa0281430 | Msa0336310 | 0.806385 | 8.440392e-50 | -8.615850e-47 |
| Msa0281430 | Msa0341690 | 0.812173 | 4.842631e-51 | -8.615850e-47 |
| Msa0281430 | Msa0342010 | 0.836370 | 9.737400e-57 | -8.615850e-47 |
| Msa0281430 | Msa0357990 | 0.801684 | 8.016650e-49 | -8.615850e-47 |
| Msa0281430 | Msa0360210 | 0.816405 | 5.624312e-52 | -8.615850e-47 |
| Msa0281430 | Msa0365100 | 0.809714 | 1.650741e-50 | -8.615850e-47 |
| Msa0281430 | Msa0378720 | 0.809136 | 2.196308e-50 | -8.615850e-47 |
| Msa0281430 | Msa0387880 | -0.802406 | 5.695047e-49 | -8.615850e-47 |
| Msa0281430 | Msa0403660 | 0.821016 | 5.051278e-53 | -8.615850e-47 |
| Msa0281430 | Msa0406770 | 0.815068 | 1.117357e-51 | -8.615850e-47 |
| Msa0281430 | Msa0411410 | 0.806054 | 9.911223e-50 | -8.615850e-47 |
| Msa0281430 | Msa0427120 | 0.804565 | 2.032212e-49 | -8.615850e-47 |
| Msa0281430 | Msa0428050 | 0.809424 | 1.905050e-50 | -8.615850e-47 |
| Msa0281430 | Msa0431770 | 0.804601 | 1.997850e-49 | -8.615850e-47 |
| Msa0281430 | Msa0432160 | 0.804609 | 1.989770e-49 | -8.615850e-47 |
| Msa0281430 | Msa0450400 | -0.815051 | 1.126747e-51 | -8.615850e-47 |
| Msa0281430 | Msa0451070 | 0.825298 | 5.058625e-54 | -8.615850e-47 |
| Msa0281430 | Msa0455740 | 0.812854 | 3.437346e-51 | -8.615850e-47 |
| Msa0281430 | Msa0467100 | 0.813503 | 2.477218e-51 | -8.615850e-47 |
| Msa0281430 | Msa0476680 | 0.808168 | 3.535427e-50 | -8.615850e-47 |
| Msa0281430 | Msa0479200 | 0.851788 | 7.062250e-61 | -8.615850e-47 |
| Msa0281430 | Msa0481750 | 0.811898 | 5.561406e-51 | -8.615850e-47 |
| Msa0281430 | Msa0485240 | 0.817409 | 3.347600e-52 | -8.615850e-47 |
| Msa0281430 | Msa0510290 | 0.801479 | 8.829960e-49 | -8.615850e-47 |
| Msa0281430 | Msa0521010 | 0.804015 | 2.646198e-49 | -8.615850e-47 |
| Msa0281430 | Msa0527190 | 0.821880 | 3.190982e-53 | -8.615850e-47 |
| Msa0281430 | Msa0556010 | 0.812233 | 4.700738e-51 | -8.615850e-47 |
| Msa0281430 | Msa0574390 | 0.814779 | 1.294672e-51 | -8.615850e-47 |
| Msa0281430 | Msa0576680 | 0.825919 | 3.604545e-54 | -8.615850e-47 |
| Msa0281430 | Msa0578090 | 0.805681 | 1.186981e-49 | -8.615850e-47 |
| Msa0281430 | Msa0579660 | 0.814759 | 1.308301e-51 | -8.615850e-47 |
| Msa0281430 | Msa0581690 | 0.814624 | 1.401108e-51 | -8.615850e-47 |
| Msa0281430 | Msa0586850 | 0.800147 | 1.651706e-48 | -8.615850e-47 |
| Msa0281430 | Msa0620620 | 0.849180 | 3.815219e-60 | -8.615850e-47 |
| Msa0281430 | Msa0640500 | 0.806687 | 7.286773e-50 | -8.615850e-47 |
| Msa0281430 | Msa0664760 | 0.800825 | 1.201750e-48 | -8.615850e-47 |
| Msa0281430 | Msa0721970 | 0.803391 | 3.564453e-49 | -8.615850e-47 |
| Msa0281430 | Msa0725000 | 0.800319 | 1.523627e-48 | -8.615850e-47 |
| Msa0281430 | Msa0737570 | 0.813462 | 2.528882e-51 | -8.615850e-47 |
| Msa0281430 | Msa0742510 | 0.806621 | 7.526054e-50 | -8.615850e-47 |
| Msa0281430 | Msa0745200 | 0.800021 | 1.752235e-48 | -8.615850e-47 |
| Msa0281430 | Msa0751260 | 0.824047 | 9.975475e-54 | -8.615850e-47 |
| Msa0281430 | Msa0765270 | 0.814628 | 1.398412e-51 | -8.615850e-47 |
| Msa0281430 | Msa0779550 | 0.812556 | 3.995469e-51 | -8.615850e-47 |
| Msa0281430 | Msa0795070 | 0.811899 | 5.558103e-51 | -8.615850e-47 |
| Msa0281430 | Msa0800270 | 0.812382 | 4.360019e-51 | -8.615850e-47 |
| Msa0281430 | Msa0800700 | 0.807071 | 6.044705e-50 | -8.615850e-47 |
| Msa0281430 | Msa0805450 | 0.805648 | 1.206353e-49 | -8.615850e-47 |
| Msa0281430 | Msa0811520 | 0.810513 | 1.110213e-50 | -8.615850e-47 |
| Msa0281430 | Msa0821190 | 0.801961 | 7.031107e-49 | -8.615850e-47 |
| Msa0281430 | Msa0822500 | 0.804710 | 1.895721e-49 | -8.615850e-47 |
| Msa0281430 | Msa0826760 | 0.849805 | 2.554683e-60 | -8.615850e-47 |
| Msa0281430 | Msa0838260 | 0.801801 | 7.584293e-49 | -8.615850e-47 |
| Msa0281430 | Msa0845110 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa0281430 | Msa0851730 | 0.817032 | 4.068479e-52 | -8.615850e-47 |
| Msa0281430 | Msa0856920 | 0.801935 | 7.118803e-49 | -8.615850e-47 |
| Msa0281430 | Msa0865570 | 0.827203 | 1.781533e-54 | -8.615850e-47 |
| Msa0281430 | Msa0926470 | 0.805852 | 1.092701e-49 | -8.615850e-47 |
| Msa0281430 | Msa0940580 | 0.802513 | 5.414355e-49 | -8.615850e-47 |
| Msa0281430 | Msa0997430 | 0.810928 | 9.032240e-51 | -8.615850e-47 |
| Msa0281430 | Msa1004800 | 0.801377 | 9.265274e-49 | -8.615850e-47 |
| Msa0281430 | Msa1027360 | 0.801477 | 8.840462e-49 | -8.615850e-47 |
| Msa0281430 | Msa1028590 | 0.802261 | 6.100632e-49 | -8.615850e-47 |
| Msa0281430 | Msa1031930 | 0.807482 | 4.947467e-50 | -8.615850e-47 |
| Msa0281430 | Msa1033660 | 0.810903 | 9.144670e-51 | -8.615850e-47 |
| Msa0281430 | Msa1034500 | 0.835468 | 1.648639e-56 | -8.615850e-47 |
| Msa0281430 | Msa1038080 | 0.821443 | 4.026805e-53 | -8.615850e-47 |
| Msa0281430 | Msa1040840 | 0.801534 | 8.607143e-49 | -8.615850e-47 |
| Msa0281430 | Msa1061980 | 0.807004 | 6.245284e-50 | -8.615850e-47 |
| Msa0281430 | Msa1064250 | 0.804775 | 1.836958e-49 | -8.615850e-47 |
| Msa0281430 | Msa1068170 | 0.800981 | 1.116625e-48 | -8.615850e-47 |
| Msa0281430 | Msa1071770 | 0.807413 | 5.117762e-50 | -8.615850e-47 |
| Msa0281430 | Msa1073490 | 0.812100 | 5.023878e-51 | -8.615850e-47 |
| Msa0281430 | Msa1076560 | 0.817331 | 3.485881e-52 | -8.615850e-47 |
| Msa0281430 | Msa1079230 | 0.820735 | 5.863719e-53 | -8.615850e-47 |
| Msa0281430 | Msa1080640 | 0.839881 | 1.214920e-57 | -8.615850e-47 |
| Msa0281430 | Msa1080800 | 0.809856 | 1.538629e-50 | -8.615850e-47 |
| Msa0281430 | Msa1089450 | 0.815979 | 7.001895e-52 | -8.615850e-47 |
| Msa0281430 | Msa1095650 | 0.827834 | 1.256992e-54 | -8.615850e-47 |
| Msa0281430 | Msa1118940 | 0.818262 | 2.148983e-52 | -8.615850e-47 |
| Msa0281430 | Msa1126450 | 0.807348 | 5.280888e-50 | -8.615850e-47 |
| Msa0281430 | Msa1129690 | 0.801738 | 7.813209e-49 | -8.615850e-47 |
| Msa0281430 | Msa1135890 | 0.822199 | 2.692053e-53 | -8.615850e-47 |
| Msa0281430 | Msa1158830 | 0.806214 | 9.169405e-50 | -8.615850e-47 |
| Msa0281430 | Msa1163540 | 0.800503 | 1.397948e-48 | -8.615850e-47 |
| Msa0281430 | Msa1173300 | 0.824590 | 7.432501e-54 | -8.615850e-47 |
| Msa0281430 | Msa1208160 | 0.804891 | 1.737342e-49 | -8.615850e-47 |
| Msa0281430 | Msa1214240 | 0.809770 | 1.605890e-50 | -8.615850e-47 |
| Msa0281430 | Msa1218450 | 0.817761 | 2.788738e-52 | -8.615850e-47 |
| Msa0281430 | Msa1227640 | 0.812117 | 4.982448e-51 | -8.615850e-47 |
| Msa0281430 | Msa1235250 | 0.800622 | 1.322182e-48 | -8.615850e-47 |
| Msa0281430 | Msa1252850 | -0.832949 | 7.057279e-56 | -8.615850e-47 |
| Msa0281430 | Msa1265590 | 0.804982 | 1.663167e-49 | -8.615850e-47 |
| Msa0281430 | Msa1269890 | 0.815078 | 1.111618e-51 | -8.615850e-47 |
| Msa0281430 | Msa1269970 | 0.812210 | 4.754588e-51 | -8.615850e-47 |
| Msa0281430 | Msa1275590 | 0.818549 | 1.849455e-52 | -8.615850e-47 |
| Msa0281430 | Msa1276660 | 0.812642 | 3.825892e-51 | -8.615850e-47 |
| Msa0281430 | Msa1279140 | -0.828801 | 7.346809e-55 | -8.615850e-47 |
| Msa0281430 | Msa1307560 | 0.809219 | 2.108586e-50 | -8.615850e-47 |
| Msa0281430 | Msa1307600 | 0.824938 | 6.153304e-54 | -8.615850e-47 |
| Msa0281430 | Msa1307870 | 0.817646 | 2.960589e-52 | -8.615850e-47 |
| Msa0281430 | Msa1365760 | 0.805060 | 1.601786e-49 | -8.615850e-47 |
| Msa0281430 | Msa1370620 | 0.813215 | 2.865210e-51 | -8.615850e-47 |
| Msa0281430 | Msa1371520 | 0.822369 | 2.458227e-53 | -8.615850e-47 |
| Msa0281430 | Msa1373820 | 0.818133 | 2.297739e-52 | -8.615850e-47 |
| Msa0281430 | Msa1386710 | 0.802100 | 6.584058e-49 | -8.615850e-47 |
| Msa0281430 | Msa1389850 | 0.805500 | 1.295775e-49 | -8.615850e-47 |
| Msa0281430 | Msa1389880 | 0.821854 | 3.236048e-53 | -8.615850e-47 |
| Msa0281430 | Msa1416370 | 0.806970 | 6.351851e-50 | -8.615850e-47 |
| Msa0281430 | Msa1418240 | 0.815377 | 9.535667e-52 | -8.615850e-47 |
| Msa0281430 | Msa1423350 | 0.809949 | 1.469642e-50 | -8.615850e-47 |
| Msa0281430 | Msa1425880 | 0.812694 | 3.727647e-51 | -8.615850e-47 |
| Msa0281430 | Msa1437210 | 0.800169 | 1.634758e-48 | -8.615850e-47 |
| Msa0281430 | Msa1438050 | 0.804233 | 2.383874e-49 | -8.615850e-47 |
| Msa0281430 | Msa1440310 | 0.840907 | 6.554166e-58 | -8.615850e-47 |
| Msa0281430 | Msa1443930 | 0.801693 | 7.980975e-49 | -8.615850e-47 |
| Msa0281430 | Msa1445390 | -0.812973 | 3.237424e-51 | -8.615850e-47 |
| Msa0281430 | Msa1446780 | 0.803253 | 3.808127e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281430 | MtrunA17_Chr2g0296021 | 99.095 | 221 | 2 | 0 | 1 | 221 | 1 | 221 | 6.11e-167 | 458 |
| Msa0281430 | MtrunA17_Chr1g0169861 | 67.580 | 219 | 71 | 0 | 1 | 219 | 51 | 269 | 1.12e-115 | 331 |
| Msa0281430 | MtrunA17_Chr4g0010271 | 71.233 | 219 | 63 | 0 | 1 | 219 | 1 | 219 | 4.05e-113 | 322 |
| Msa0281430 | MtrunA17_Chr7g0237561 | 70.455 | 220 | 65 | 0 | 1 | 220 | 1 | 220 | 1.83e-109 | 313 |
| Msa0281430 | MtrunA17_Chr4g0043521 | 67.526 | 194 | 63 | 0 | 2 | 195 | 4 | 197 | 5.82e-102 | 294 |
| Msa0281430 | MtrunA17_Chr2g0291651 | 64.948 | 194 | 68 | 0 | 2 | 195 | 6 | 199 | 8.81e-99 | 286 |
| Msa0281430 | MtrunA17_Chr7g0237521 | 63.590 | 195 | 71 | 0 | 1 | 195 | 1 | 195 | 1.66e-94 | 275 |
| Msa0281430 | MtrunA17_Chr1g0210521 | 51.261 | 238 | 97 | 1 | 1 | 219 | 1 | 238 | 1.21e-90 | 266 |
| Msa0281430 | MtrunA17_Chr1g0169851 | 57.823 | 147 | 47 | 1 | 57 | 188 | 8 | 154 | 6.42e-54 | 170 |
| Msa0281430 | MtrunA17_Chr4g0010211 | 68.519 | 108 | 34 | 0 | 64 | 171 | 3 | 110 | 1.99e-49 | 157 |
| Msa0281430 | MtrunA17_Chr5g0441741 | 35.545 | 211 | 133 | 3 | 7 | 216 | 4 | 212 | 1.59e-40 | 138 |
| Msa0281430 | MtrunA17_Chr4g0026121 | 32.394 | 213 | 141 | 3 | 5 | 216 | 2 | 212 | 1.84e-40 | 137 |
| Msa0281430 | MtrunA17_Chr4g0064371 | 28.372 | 215 | 147 | 3 | 7 | 216 | 4 | 216 | 9.53e-33 | 118 |
| Msa0281430 | MtrunA17_Chr3g0126921 | 20.628 | 223 | 158 | 7 | 8 | 219 | 15 | 229 | 9.82e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0281430 | AT4G15780.1 | 88.827 | 179 | 19 | 1 | 1 | 178 | 1 | 179 | 1.48e-119 | 337 |
| Msa0281430 | AT1G04760.2 | 67.727 | 220 | 71 | 0 | 1 | 220 | 1 | 220 | 1.58e-110 | 316 |
| Msa0281430 | AT1G04760.1 | 67.727 | 220 | 71 | 0 | 1 | 220 | 1 | 220 | 1.58e-110 | 316 |
| Msa0281430 | AT2G33120.1 | 70.909 | 220 | 64 | 0 | 1 | 220 | 1 | 220 | 2.95e-110 | 315 |
| Msa0281430 | AT2G32670.1 | 70.000 | 220 | 66 | 0 | 1 | 220 | 66 | 285 | 7.35e-110 | 317 |
| Msa0281430 | AT1G04750.1 | 69.406 | 219 | 67 | 0 | 1 | 219 | 1 | 219 | 4.20e-108 | 310 |
| Msa0281430 | AT2G33120.2 | 68.722 | 227 | 63 | 1 | 1 | 219 | 1 | 227 | 1.98e-107 | 308 |
| Msa0281430 | AT3G54300.3 | 51.667 | 240 | 97 | 2 | 1 | 221 | 1 | 240 | 6.53e-92 | 270 |
| Msa0281430 | AT3G54300.2 | 51.667 | 240 | 97 | 2 | 1 | 221 | 1 | 240 | 6.53e-92 | 270 |
| Msa0281430 | AT3G54300.1 | 51.667 | 240 | 97 | 2 | 1 | 221 | 1 | 240 | 6.53e-92 | 270 |
| Msa0281430 | AT2G33110.1 | 59.361 | 219 | 85 | 1 | 1 | 219 | 1 | 215 | 2.53e-85 | 252 |
| Msa0281430 | AT2G33110.2 | 64.103 | 156 | 56 | 0 | 1 | 156 | 1 | 156 | 1.11e-71 | 216 |
| Msa0281430 | AT1G04750.2 | 68.085 | 141 | 45 | 0 | 79 | 219 | 1 | 141 | 4.18e-59 | 183 |
| Msa0281430 | AT1G04750.4 | 68.085 | 141 | 45 | 0 | 79 | 219 | 1 | 141 | 4.18e-59 | 183 |
| Msa0281430 | AT1G04750.3 | 68.085 | 141 | 45 | 0 | 79 | 219 | 1 | 141 | 4.18e-59 | 183 |
| Msa0281430 | AT5G22360.1 | 33.645 | 214 | 138 | 3 | 5 | 216 | 2 | 213 | 5.90e-45 | 149 |
| Msa0281430 | AT5G11150.1 | 33.645 | 214 | 138 | 3 | 5 | 216 | 2 | 213 | 1.95e-42 | 143 |
| Msa0281430 | AT5G11150.2 | 33.645 | 214 | 138 | 3 | 5 | 216 | 2 | 213 | 2.03e-42 | 143 |
| Msa0281430 | AT4G32150.1 | 34.737 | 190 | 121 | 3 | 5 | 193 | 2 | 189 | 1.72e-38 | 133 |
| Msa0281430 | AT2G25340.1 | 32.632 | 190 | 125 | 3 | 5 | 193 | 2 | 189 | 6.58e-33 | 118 |
| Msa0281430 | AT2G33120.3 | 72.093 | 86 | 24 | 0 | 134 | 219 | 52 | 137 | 1.18e-30 | 110 |
| Msa0281430 | AT3G24890.2 | 42.268 | 97 | 42 | 2 | 114 | 200 | 15 | 107 | 9.52e-19 | 79.3 |
Find 57 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTGAACAAGGAATT+TGG | 0.190475 | 2_3:-16855649 | Msa0281430:CDS |
| TCAGAACATGAAAATTAAAT+TGG | 0.225912 | 2_3:-16854387 | Msa0281430:CDS |
| AAAATTAAATTGGTTGTTCT+TGG | 0.225914 | 2_3:-16854377 | Msa0281430:CDS |
| AAATTCCTTGTTCAGACTTT+TGG | 0.253010 | 2_3:+16855651 | None:intergenic |
| CTGTTCAAATTAGCAATAAT+TGG | 0.262585 | 2_3:-16854300 | Msa0281430:exon |
| CTGCTTGCTAACAGATTCTT+TGG | 0.273100 | 2_3:+16855753 | None:intergenic |
| ATTGGTAATTGTTAAATAGA+AGG | 0.289140 | 2_3:-16853974 | Msa0281430:three_prime_UTR |
| GATAAAGATATGAATGTTAT+TGG | 0.308510 | 2_3:-16853992 | Msa0281430:three_prime_UTR |
| TAATTGGAAGTTTACTAATC+AGG | 0.336015 | 2_3:-16854284 | Msa0281430:three_prime_UTR |
| ACTGTAGGTGAACTTGTTAT+TGG | 0.347549 | 2_3:+16857436 | None:intergenic |
| TTCATGTGCTCTTTCATAAT+CGG | 0.353938 | 2_3:+16855532 | None:intergenic |
| AAGTGAGAAACTGCCCCTTC+TGG | 0.353962 | 2_3:+16854045 | None:intergenic |
| AAAGTTTCCTACCTTGTTGC+TGG | 0.359079 | 2_3:-16854017 | Msa0281430:three_prime_UTR |
| TTTCTTGTCGAAGATGGTTA+TGG | 0.385122 | 2_3:-16857392 | Msa0281430:intron |
| GCCGACTTTAAGAAAAGATA+TGG | 0.410544 | 2_3:-16855700 | Msa0281430:CDS |
| GTTATCTGGCTCTCTATTTG+TGG | 0.422650 | 2_3:-16854332 | Msa0281430:CDS |
| AGTGAGAAACTGCCCCTTCT+GGG | 0.440138 | 2_3:+16854046 | None:intergenic |
| AAAGTCTGAACAAGGAATTT+GGG | 0.465281 | 2_3:-16855648 | Msa0281430:intron |
| GTGAACTTGTTATTGGAAGA+AGG | 0.469932 | 2_3:+16857443 | None:intergenic |
| GAAGATGGTGAAAATATGAT+TGG | 0.472754 | 2_3:-16854150 | Msa0281430:three_prime_UTR |
| AGTCGGCTTTGACACGTTCA+AGG | 0.477338 | 2_3:+16855716 | None:intergenic |
| ATCTGGCTCTCTATTTGTGG+TGG | 0.488664 | 2_3:-16854329 | Msa0281430:CDS |
| AGACACTGAGCTGCAATGGC+AGG | 0.504015 | 2_3:+16857476 | None:intergenic |
| CTGAAGACACTGAGCTGCAA+TGG | 0.506758 | 2_3:+16857472 | None:intergenic |
| ATCTTCGACAAGAAAATTGA+AGG | 0.507938 | 2_3:+16857400 | None:intergenic |
| AAGTTATCGCATGGTGAAGA+TGG | 0.512626 | 2_3:-16854165 | Msa0281430:three_prime_UTR |
| GTTTCCTACCTTGTTGCTGG+TGG | 0.517120 | 2_3:-16854014 | Msa0281430:three_prime_UTR |
| AGAAGGGGCAGTTTCTCACT+TGG | 0.522569 | 2_3:-16854043 | Msa0281430:three_prime_UTR |
| CACAGGTCCGTCGGAAGATG+TGG | 0.530944 | 2_3:-16854412 | Msa0281430:CDS |
| ATATACAGCTTTGTAGCTCG+TGG | 0.541984 | 2_3:-16857542 | Msa0281430:CDS |
| TATATCAATTTATCCTGTGA+TGG | 0.547232 | 2_3:-16853945 | Msa0281430:three_prime_UTR |
| GCTGAGTACACCGAGTTCAC+TGG | 0.552986 | 2_3:-16857506 | Msa0281430:CDS |
| CAGATCAAACAGTCCATCAC+AGG | 0.553066 | 2_3:+16853932 | None:intergenic |
| AATTGTTAAATAGAAGGAAA+GGG | 0.554591 | 2_3:-16853968 | Msa0281430:three_prime_UTR |
| TAATTGTTAAATAGAAGGAA+AGG | 0.556270 | 2_3:-16853969 | Msa0281430:three_prime_UTR |
| AGAAGAAAATCAACCCAGAA+GGG | 0.560094 | 2_3:-16854059 | Msa0281430:three_prime_UTR |
| TGAAAAGCTATTAAAAGTGA+AGG | 0.564756 | 2_3:-16855482 | Msa0281430:CDS |
| CAAGAAAATTGAAGGTGTGA+TGG | 0.566358 | 2_3:+16857408 | None:intergenic |
| GACACGTTCAAGGAAAGCAA+TGG | 0.576248 | 2_3:+16855726 | None:intergenic |
| GCTCAAGATTTCAGAAAGCA+AGG | 0.582915 | 2_3:-16854437 | Msa0281430:CDS |
| AGGAAAGTTACCAGTGAACT+CGG | 0.587842 | 2_3:+16857496 | None:intergenic |
| TTTAAGAAAAGATATGGTGG+TGG | 0.589931 | 2_3:-16855694 | Msa0281430:CDS |
| TTTCAGAAAGCAAGGAACAC+AGG | 0.591739 | 2_3:-16854429 | Msa0281430:CDS |
| AGCAAGGAACACAGGTCCGT+CGG | 0.592470 | 2_3:-16854421 | Msa0281430:CDS |
| TAGAAGAAAATCAACCCAGA+AGG | 0.602385 | 2_3:-16854060 | Msa0281430:three_prime_UTR |
| TCACTTCATAAGTTATCGCA+TGG | 0.616321 | 2_3:-16854174 | Msa0281430:three_prime_UTR |
| ATCTTTATCCACCAGCAACA+AGG | 0.624615 | 2_3:+16854006 | None:intergenic |
| GCTCTGTAACTGAGTTAACT+CGG | 0.633844 | 2_3:+16857586 | None:intergenic |
| TATTGCCAAAAGTCTGAACA+AGG | 0.635316 | 2_3:-16855656 | Msa0281430:CDS |
| CTTTGTAGCTCGTGGAACGA+TGG | 0.636038 | 2_3:-16857534 | Msa0281430:CDS |
| GAAGAAAATCAACCCAGAAG+GGG | 0.642698 | 2_3:-16854058 | Msa0281430:three_prime_UTR |
| CATGTTAGAAAATATAGACA+AGG | 0.648118 | 2_3:-16855434 | Msa0281430:intron |
| GGTGTGATGGTCACAACTGT+AGG | 0.651595 | 2_3:+16857421 | None:intergenic |
| TTATCCACCAGCAACAAGGT+AGG | 0.655353 | 2_3:+16854010 | None:intergenic |
| GACTTTAAGAAAAGATATGG+TGG | 0.664798 | 2_3:-16855697 | Msa0281430:CDS |
| TCTGATACCACATCTTCCGA+CGG | 0.674197 | 2_3:+16854405 | None:intergenic |
| TATGAAGTGATATTATGACC+TGG | 0.718647 | 2_3:+16854187 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTATATTAATTT+TGG | - | chr2_3:16854849-16854868 | Msa0281430:intron | 0.0% |
| !!! | TATTTTTTTATATTAATTTT+GGG | - | chr2_3:16854850-16854869 | Msa0281430:intron | 0.0% |
| !!! | TGTAATTAATTTTCAATAAA+CGG | - | chr2_3:16853956-16853975 | Msa0281430:three_prime_UTR | 10.0% |
| !! | AAAAATAATTCTTAGAATTT+CGG | + | chr2_3:16854837-16854856 | None:intergenic | 10.0% |
| !! | GTATAAAAAGTTTAATAATA+TGG | - | chr2_3:16856087-16856106 | Msa0281430:intron | 10.0% |
| !! | CAAATATAGACAATAATTAA+TGG | + | chr2_3:16855265-16855284 | None:intergenic | 15.0% |
| !! | CATTAATTATTGTCTATATT+TGG | - | chr2_3:16855263-16855282 | Msa0281430:intron | 15.0% |
| !!! | ATTTTAGAAAAAGATAAACT+TGG | - | chr2_3:16855326-16855345 | Msa0281430:intron | 15.0% |
| !!! | TTTTAGAAAAAGATAAACTT+GGG | - | chr2_3:16855327-16855346 | Msa0281430:intron | 15.0% |
| !! | ATAAAAGCTTATTATTAGTA+AGG | - | chr2_3:16855508-16855527 | Msa0281430:CDS | 15.0% |
| !! | GATAAATAATAGTTTATACA+CGG | + | chr2_3:16856961-16856980 | None:intergenic | 15.0% |
| !! | CTTAAATAGAACTTAAAATA+AGG | + | chr2_3:16856990-16857009 | None:intergenic | 15.0% |
| !! | TATAGAAATTGGAAAAAAGT+TGG | - | chr2_3:16853992-16854011 | Msa0281430:three_prime_UTR | 20.0% |
| !! | ATAGAAATTGGAAAAAAGTT+GGG | - | chr2_3:16853993-16854012 | Msa0281430:three_prime_UTR | 20.0% |
| !! | TTTATTGAGTTCTCTAATTA+AGG | - | chr2_3:16854544-16854563 | Msa0281430:CDS | 20.0% |
| !!! | ATTAAGGTAAATGATTTTTG+TGG | - | chr2_3:16854578-16854597 | Msa0281430:CDS | 20.0% |
| !!! | TTTTATATTAATTTTGGGGA+AGG | - | chr2_3:16854855-16854874 | Msa0281430:intron | 20.0% |
| !!! | TTTATATTAATTTTGGGGAA+GGG | - | chr2_3:16854856-16854875 | Msa0281430:intron | 20.0% |
| !! | ATTCAAAAACCGTATTAAAA+TGG | + | chr2_3:16854915-16854934 | None:intergenic | 20.0% |
| !!! | ATTTTAATACGGTTTTTGAA+TGG | - | chr2_3:16854914-16854933 | Msa0281430:intron | 20.0% |
| !!! | AAGTATTTGTTTTTGGTTTT+TGG | - | chr2_3:16855001-16855020 | Msa0281430:intron | 20.0% |
| !!! | TTTTGGTGAATTTTATTGTA+TGG | - | chr2_3:16855018-16855037 | Msa0281430:intron | 20.0% |
| !! | TGTAATTAAAGAACATTGAA+AGG | - | chr2_3:16855214-16855233 | Msa0281430:intron | 20.0% |
| !! | ATTATTGTCTATATTTGGAT+TGG | - | chr2_3:16855268-16855287 | Msa0281430:intron | 20.0% |
| !!! | ATAAGCTTTTATATGTTTGT+AGG | + | chr2_3:16855500-16855519 | None:intergenic | 20.0% |
| !!! | AAATGGATTGTAAATTAGTA+GGG | + | chr2_3:16856332-16856351 | None:intergenic | 20.0% |
| !!! | AAAATGGATTGTAAATTAGT+AGG | + | chr2_3:16856333-16856352 | None:intergenic | 20.0% |
| !!! | CCATTTTTTCAAATAATTAC+TGG | + | chr2_3:16856653-16856672 | None:intergenic | 20.0% |
| !! | CCAGTAATTATTTGAAAAAA+TGG | - | chr2_3:16856650-16856669 | Msa0281430:intron | 20.0% |
| !!! | ATTTTAAGTTCTATTTAAGC+TGG | - | chr2_3:16856991-16857010 | Msa0281430:intron | 20.0% |
| !!! | CTTTAATCATTTATGTTTTC+AGG | - | chr2_3:16857059-16857078 | Msa0281430:intron | 20.0% |
| !!! | AAAAAGATTCTGTAATTTTC+AGG | - | chr2_3:16857198-16857217 | Msa0281430:intron | 20.0% |
| !! | TCAGAACATGAAAATTAAAT+TGG | - | chr2_3:16857270-16857289 | Msa0281430:intron | 20.0% |
| !! | AAAATTAAATTGGTTGTTCT+TGG | - | chr2_3:16857280-16857299 | Msa0281430:intron | 20.0% |
| !! | GATAAAGATATGAATGTTAT+TGG | - | chr2_3:16857665-16857684 | Msa0281430:five_prime_UTR | 20.0% |
| !!! | ATTGGTAATTGTTAAATAGA+AGG | - | chr2_3:16857683-16857702 | Msa0281430:five_prime_UTR | 20.0% |
| !! | TAATTGTTAAATAGAAGGAA+AGG | - | chr2_3:16857688-16857707 | Msa0281430:five_prime_UTR | 20.0% |
| !! | AATTGTTAAATAGAAGGAAA+GGG | - | chr2_3:16857689-16857708 | Msa0281430:five_prime_UTR | 20.0% |
| !! | AATCTGAATTGTGTGTTTTT+AGG | - | chr2_3:16854379-16854398 | Msa0281430:CDS | 25.0% |
| !!! | GCTTAAAGTTTTGATCTTTT+TGG | - | chr2_3:16854422-16854441 | Msa0281430:CDS | 25.0% |
| !! | TGTGGAATGTTGTTATATTT+TGG | - | chr2_3:16854473-16854492 | Msa0281430:intron | 25.0% |
| !!! | TTTTGGTGATTGAAGTAAAT+AGG | - | chr2_3:16854490-16854509 | Msa0281430:intron | 25.0% |
| !!! | TAAGGTTTGTTAGTCAATTA+AGG | - | chr2_3:16854562-16854581 | Msa0281430:CDS | 25.0% |
| ! | TGTCATTAGATGATTAAATC+CGG | - | chr2_3:16854618-16854637 | Msa0281430:intron | 25.0% |
| !!! | CACTAATGACCATTTTAATA+CGG | - | chr2_3:16854903-16854922 | Msa0281430:intron | 25.0% |
| ! | ATTGTTCAAAGTTCAAACAA+GGG | - | chr2_3:16855057-16855076 | Msa0281430:intron | 25.0% |
| ! | TAATCACAACTCAAAAACTA+CGG | + | chr2_3:16855108-16855127 | None:intergenic | 25.0% |
| !!! | TAGTTTTTGAGTTGTGATTA+GGG | - | chr2_3:16855108-16855127 | Msa0281430:intron | 25.0% |
| !! | AAAGAACATTGAAAGGATTT+TGG | - | chr2_3:16855221-16855240 | Msa0281430:intron | 25.0% |
| !!! | ATCTTTTTCTAAAATCACAG+TGG | + | chr2_3:16855321-16855340 | None:intergenic | 25.0% |
| !! | ACCATATCTTTTCTTAAAGT+CGG | + | chr2_3:16855961-16855980 | None:intergenic | 25.0% |
| !!! | TAAAGTTTGTTGACATCTTA+AGG | - | chr2_3:16856048-16856067 | Msa0281430:intron | 25.0% |
| ! | TGAAAAGCTATTAAAAGTGA+AGG | - | chr2_3:16856175-16856194 | Msa0281430:intron | 25.0% |
| ! | CATGTTAGAAAATATAGACA+AGG | - | chr2_3:16856223-16856242 | Msa0281430:intron | 25.0% |
| !!! | TTTTAGAGAAAACGTGAAAA+TGG | + | chr2_3:16856349-16856368 | None:intergenic | 25.0% |
| ! | AAATGTTAAGAACAATGTGA+AGG | - | chr2_3:16856519-16856538 | Msa0281430:intron | 25.0% |
| ! | AGAACTTAAAATAAGGCAAT+GGG | + | chr2_3:16856983-16857002 | None:intergenic | 25.0% |
| ! | TAGAACTTAAAATAAGGCAA+TGG | + | chr2_3:16856984-16857003 | None:intergenic | 25.0% |
| ! | CTGTTCAAATTAGCAATAAT+TGG | - | chr2_3:16857357-16857376 | Msa0281430:intron | 25.0% |
| ! | TAATTGGAAGTTTACTAATC+AGG | - | chr2_3:16857373-16857392 | Msa0281430:intron | 25.0% |
| !! | ACATGAAATCATATTTTACC+AGG | - | chr2_3:16857452-16857471 | Msa0281430:CDS | 25.0% |
| ! | TATATCAATTTATCCTGTGA+TGG | - | chr2_3:16857712-16857731 | Msa0281430:five_prime_UTR | 25.0% |
| ! | CAAAAAGAGGGTATAGAAAT+TGG | - | chr2_3:16853981-16854000 | Msa0281430:three_prime_UTR | 30.0% |
| ATCTTCGACAAGAAAATTGA+AGG | + | chr2_3:16854260-16854279 | None:intergenic | 30.0% | |
| ! | TTCAATTTTCTTGTCGAAGA+TGG | - | chr2_3:16854259-16854278 | Msa0281430:three_prime_UTR | 30.0% |
| !!! | AATTGTGTGTTTTTAGGTGA+TGG | - | chr2_3:16854385-16854404 | Msa0281430:CDS | 30.0% |
| !!! | GGTTTTTGAGTTGATTTTAG+TGG | - | chr2_3:16854443-16854462 | Msa0281430:intron | 30.0% |
| !!! | TTTTGAGTTGATTTTAGTGG+TGG | - | chr2_3:16854446-16854465 | Msa0281430:intron | 30.0% |
| !!! | TTTGAGTTGATTTTAGTGGT+GGG | - | chr2_3:16854447-16854466 | Msa0281430:intron | 30.0% |
| CCTAACTCAACTTATAAAAC+CGG | + | chr2_3:16854809-16854828 | None:intergenic | 30.0% | |
| TAATTCTTAGAATTTCGGCT+GGG | + | chr2_3:16854832-16854851 | None:intergenic | 30.0% | |
| ATAATTCTTAGAATTTCGGC+TGG | + | chr2_3:16854833-16854852 | None:intergenic | 30.0% | |
| AAAAACAAATACTTCTAGCC+TGG | + | chr2_3:16854995-16855014 | None:intergenic | 30.0% | |
| !!! | AGGCTAGAAGTATTTGTTTT+TGG | - | chr2_3:16854994-16855013 | Msa0281430:intron | 30.0% |
| CATTGTTCAAAGTTCAAACA+AGG | - | chr2_3:16855056-16855075 | Msa0281430:intron | 30.0% | |
| !!! | GTAGTTTTTGAGTTGTGATT+AGG | - | chr2_3:16855107-16855126 | Msa0281430:intron | 30.0% |
| !! | TCCATTTTTCCAAAAGGTTT+CGG | - | chr2_3:16855465-16855484 | Msa0281430:CDS | 30.0% |
| ! | TGTTTATTTCCGAAACCTTT+TGG | + | chr2_3:16855477-16855496 | None:intergenic | 30.0% |
| AGTTATATTTAGTGAGAGCA+TGG | + | chr2_3:16855729-16855748 | None:intergenic | 30.0% | |
| ! | GACTTTAAGAAAAGATATGG+TGG | - | chr2_3:16855960-16855979 | Msa0281430:intron | 30.0% |
| TTTAAGAAAAGATATGGTGG+TGG | - | chr2_3:16855963-16855982 | Msa0281430:intron | 30.0% | |
| ! | AAATTCCTTGTTCAGACTTT+TGG | + | chr2_3:16856009-16856028 | None:intergenic | 30.0% |
| AAAAGTCTGAACAAGGAATT+TGG | - | chr2_3:16856008-16856027 | Msa0281430:intron | 30.0% | |
| AAAGTCTGAACAAGGAATTT+GGG | - | chr2_3:16856009-16856028 | Msa0281430:intron | 30.0% | |
| TTCATGTGCTCTTTCATAAT+CGG | + | chr2_3:16856128-16856147 | None:intergenic | 30.0% | |
| !!! | AGACAAGGTACTGTTTTTTT+AGG | - | chr2_3:16856238-16856257 | Msa0281430:intron | 30.0% |
| TTCTACCACAGTTATCATTA+TGG | - | chr2_3:16856300-16856319 | Msa0281430:intron | 30.0% | |
| !! | TCACGTTTTCTCTAAAAATG+TGG | - | chr2_3:16856352-16856371 | Msa0281430:intron | 30.0% |
| !! | CACGTTTTCTCTAAAAATGT+GGG | - | chr2_3:16856353-16856372 | Msa0281430:intron | 30.0% |
| !! | ACGTTTTCTCTAAAAATGTG+GGG | - | chr2_3:16856354-16856373 | Msa0281430:intron | 30.0% |
| ! | AGTTACTCAAAGTTTCAAGT+GGG | + | chr2_3:16856880-16856899 | None:intergenic | 30.0% |
| !!! | TCTTGGAATTCTGTTGTTTT+TGG | - | chr2_3:16857297-16857316 | Msa0281430:intron | 30.0% |
| !!! | TGTTTTTGGTTCTAGTTATC+TGG | - | chr2_3:16857311-16857330 | Msa0281430:intron | 30.0% |
| TATGAAGTGATATTATGACC+TGG | + | chr2_3:16857473-16857492 | None:intergenic | 30.0% | |
| GAAGATGGTGAAAATATGAT+TGG | - | chr2_3:16857507-16857526 | Msa0281430:CDS | 30.0% | |
| TCAATAAACGGCACAAAAAG+AGG | - | chr2_3:16853968-16853987 | Msa0281430:three_prime_UTR | 35.0% | |
| CAATAAACGGCACAAAAAGA+GGG | - | chr2_3:16853969-16853988 | Msa0281430:three_prime_UTR | 35.0% | |
| GAAATTGGAAAAAAGTTGGG+CGG | - | chr2_3:16853996-16854015 | Msa0281430:three_prime_UTR | 35.0% | |
| !! | GTGAACTTGTTATTGGAAGA+AGG | + | chr2_3:16854217-16854236 | None:intergenic | 35.0% |
| !! | ACTGTAGGTGAACTTGTTAT+TGG | + | chr2_3:16854224-16854243 | None:intergenic | 35.0% |
| ! | CAAGAAAATTGAAGGTGTGA+TGG | + | chr2_3:16854252-16854271 | None:intergenic | 35.0% |
| TTTCTTGTCGAAGATGGTTA+TGG | - | chr2_3:16854265-16854284 | Msa0281430:three_prime_UTR | 35.0% | |
| TGTTATTAGCTGCCTAATTG+CGG | - | chr2_3:16854648-16854667 | Msa0281430:intron | 35.0% | |
| !! | ACTTATAAAACCGGCTTGTA+AGG | + | chr2_3:16854800-16854819 | None:intergenic | 35.0% |
| !! | CCGGTTTTATAAGTTGAGTT+AGG | - | chr2_3:16854806-16854825 | Msa0281430:intron | 35.0% |
| GATTTGAACTCAATACCTTG+AGG | - | chr2_3:16854936-16854955 | Msa0281430:intron | 35.0% | |
| AAGTTGACTATGTGCATGTT+TGG | + | chr2_3:16855405-16855424 | None:intergenic | 35.0% | |
| !! | TACAGCTCCATTTTTCCAAA+AGG | - | chr2_3:16855459-16855478 | Msa0281430:CDS | 35.0% |
| !! | TCCGAAACCTTTTGGAAAAA+TGG | + | chr2_3:16855469-16855488 | None:intergenic | 35.0% |
| ! | ATATTTAGTGAGAGCATGGA+AGG | + | chr2_3:16855725-16855744 | None:intergenic | 35.0% |
| ! | TGTTTTCTTCGTTGTTTGCT+TGG | - | chr2_3:16855790-16855809 | Msa0281430:intron | 35.0% |
| ! | GCCGACTTTAAGAAAAGATA+TGG | - | chr2_3:16855957-16855976 | Msa0281430:intron | 35.0% |
| TATTGCCAAAAGTCTGAACA+AGG | - | chr2_3:16856001-16856020 | Msa0281430:intron | 35.0% | |
| AGGATCCATAATGATAACTG+TGG | + | chr2_3:16856308-16856327 | None:intergenic | 35.0% | |
| AACAATGTGAAGGACATGAT+TGG | - | chr2_3:16856529-16856548 | Msa0281430:intron | 35.0% | |
| GCTTCGTAGGTCATAAATAA+CGG | + | chr2_3:16856605-16856624 | None:intergenic | 35.0% | |
| AACATTGCAATATGTAGCAC+TGG | + | chr2_3:16856766-16856785 | None:intergenic | 35.0% | |
| CAGTTACTCAAAGTTTCAAG+TGG | + | chr2_3:16856881-16856900 | None:intergenic | 35.0% | |
| AGACAATGCAAGGAATTCAT+AGG | + | chr2_3:16856912-16856931 | None:intergenic | 35.0% | |
| ACATACACAAAGACAATGCA+AGG | + | chr2_3:16856922-16856941 | None:intergenic | 35.0% | |
| !! | TGTTTTCAGGCTATTGATAG+AGG | - | chr2_3:16857072-16857091 | Msa0281430:intron | 35.0% |
| AAAACAGTGTTGTCTAACCT+TGG | + | chr2_3:16857156-16857175 | None:intergenic | 35.0% | |
| TCACTTCATAAGTTATCGCA+TGG | - | chr2_3:16857483-16857502 | Msa0281430:CDS | 35.0% | |
| TAGAAGAAAATCAACCCAGA+AGG | - | chr2_3:16857597-16857616 | Msa0281430:five_prime_UTR | 35.0% | |
| AGAAGAAAATCAACCCAGAA+GGG | - | chr2_3:16857598-16857617 | Msa0281430:five_prime_UTR | 35.0% | |
| GCTCTGTAACTGAGTTAACT+CGG | + | chr2_3:16854074-16854093 | None:intergenic | 40.0% | |
| ! | ATATACAGCTTTGTAGCTCG+TGG | - | chr2_3:16854115-16854134 | Msa0281430:three_prime_UTR | 40.0% |
| AGGAAAGTTACCAGTGAACT+CGG | + | chr2_3:16854164-16854183 | None:intergenic | 40.0% | |
| TTGTGTTTGTGTGTGTTGCA+TGG | - | chr2_3:16854314-16854333 | Msa0281430:CDS | 40.0% | |
| !!! | GATTTTAGTGGTGGGTTTTG+TGG | - | chr2_3:16854455-16854474 | Msa0281430:intron | 40.0% |
| CAGCTAATAACACTTGTAGC+CGG | + | chr2_3:16854640-16854659 | None:intergenic | 40.0% | |
| ! | ACTCAACACAATGAAGGTGT+TGG | + | chr2_3:16854700-16854719 | None:intergenic | 40.0% |
| TTCATTGTGTTGAGTGCGAA+GGG | - | chr2_3:16854705-16854724 | Msa0281430:intron | 40.0% | |
| TCTCACATTGCCTAGAGATA+TGG | - | chr2_3:16854739-16854758 | Msa0281430:intron | 40.0% | |
| ACTACACAGACCATATCTCT+AGG | + | chr2_3:16854752-16854771 | None:intergenic | 40.0% | |
| !! | AAAACCGGCTTGTAAGGTAA+GGG | + | chr2_3:16854794-16854813 | None:intergenic | 40.0% |
| !! | TAAAACCGGCTTGTAAGGTA+AGG | + | chr2_3:16854795-16854814 | None:intergenic | 40.0% |
| TGAACTCAATACCTTGAGGT+AGG | - | chr2_3:16854940-16854959 | Msa0281430:intron | 40.0% | |
| TGACTTTGTAACCTACCTCA+AGG | + | chr2_3:16854954-16854973 | None:intergenic | 40.0% | |
| AAGGGTTAATCTTGTGTCTG+TGG | - | chr2_3:16855075-16855094 | Msa0281430:intron | 40.0% | |
| TGATTAGGGTGCAATAGAGA+TGG | - | chr2_3:16855122-16855141 | Msa0281430:intron | 40.0% | |
| !! | ATTTGGATTGGCAGTGAGTT+TGG | - | chr2_3:16855280-16855299 | Msa0281430:intron | 40.0% |
| !! | CAGTGAGTTTGGTGTAATCA+CGG | - | chr2_3:16855291-16855310 | Msa0281430:intron | 40.0% |
| TGGGAGCTTCAACAAAATCA+CGG | - | chr2_3:16855346-16855365 | Msa0281430:intron | 40.0% | |
| GAGCTGTAGAAGTAGAAAGT+TGG | + | chr2_3:16855447-16855466 | None:intergenic | 40.0% | |
| ! | ACTCTCTATAAAGGCGTATC+TGG | + | chr2_3:16855647-16855666 | None:intergenic | 40.0% |
| !! | ACGCCTTTATAGAGAGTATC+AGG | - | chr2_3:16855650-16855669 | Msa0281430:CDS | 40.0% |
| !! | CGCCTTTATAGAGAGTATCA+GGG | - | chr2_3:16855651-16855670 | Msa0281430:CDS | 40.0% |
| TGCCCTGATACTCTCTATAA+AGG | + | chr2_3:16855656-16855675 | None:intergenic | 40.0% | |
| ! | CTGCTTGCTAACAGATTCTT+TGG | + | chr2_3:16855907-16855926 | None:intergenic | 40.0% |
| CTGTGGTAGAAAATGATGTC+AGG | + | chr2_3:16856291-16856310 | None:intergenic | 40.0% | |
| GGATTGTAAATTAGTAGGGC+AGG | + | chr2_3:16856328-16856347 | None:intergenic | 40.0% | |
| ! | TTCTCTAAAAATGTGGGGAG+TGG | - | chr2_3:16856359-16856378 | Msa0281430:intron | 40.0% |
| ! | GGAGTGGATTTGATTCTGAT+AGG | - | chr2_3:16856380-16856399 | Msa0281430:intron | 40.0% |
| GGATTTGATTCTGATAGGAC+TGG | - | chr2_3:16856385-16856404 | Msa0281430:intron | 40.0% | |
| !! | ATGATAGTGTGAGCTTTTCC+TGG | + | chr2_3:16856461-16856480 | None:intergenic | 40.0% |
| ! | ACAGCAGTGATTAGCTGATT+AGG | + | chr2_3:16856837-16856856 | None:intergenic | 40.0% |
| TTTATACACGGTCTTCGCTT+TGG | + | chr2_3:16856949-16856968 | None:intergenic | 40.0% | |
| GCTCAAGATTTCAGAAAGCA+AGG | - | chr2_3:16857220-16857239 | Msa0281430:intron | 40.0% | |
| TTTCAGAAAGCAAGGAACAC+AGG | - | chr2_3:16857228-16857247 | Msa0281430:intron | 40.0% | |
| !! | GTTATCTGGCTCTCTATTTG+TGG | - | chr2_3:16857325-16857344 | Msa0281430:intron | 40.0% |
| AAGTTATCGCATGGTGAAGA+TGG | - | chr2_3:16857492-16857511 | Msa0281430:CDS | 40.0% | |
| GAAGAAAATCAACCCAGAAG+GGG | - | chr2_3:16857599-16857618 | Msa0281430:five_prime_UTR | 40.0% | |
| AAAGTTTCCTACCTTGTTGC+TGG | - | chr2_3:16857640-16857659 | Msa0281430:five_prime_UTR | 40.0% | |
| ATCTTTATCCACCAGCAACA+AGG | + | chr2_3:16857654-16857673 | None:intergenic | 40.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | + | chr2_3:16854697-16854716 | None:intergenic | 45.0% |
| CTTCGCACTCAACACAATGA+AGG | + | chr2_3:16854706-16854725 | None:intergenic | 45.0% | |
| CTTCATTGTGTTGAGTGCGA+AGG | - | chr2_3:16854704-16854723 | Msa0281430:intron | 45.0% | |
| TCATTGTGTTGAGTGCGAAG+GGG | - | chr2_3:16854706-16854725 | Msa0281430:intron | 45.0% | |
| ! | GACTGTCACTTCATATGACC+AGG | - | chr2_3:16854974-16854993 | Msa0281430:intron | 45.0% |
| TAGGGTGCAATAGAGATGGA+TGG | - | chr2_3:16855126-16855145 | Msa0281430:intron | 45.0% | |
| GATGGATGGTCATTGATCAG+TGG | - | chr2_3:16855140-16855159 | Msa0281430:intron | 45.0% | |
| GTATCTGGTGAGAATGTGAG+AGG | + | chr2_3:16855632-16855651 | None:intergenic | 45.0% | |
| GACACGTTCAAGGAAAGCAA+TGG | + | chr2_3:16855934-16855953 | None:intergenic | 45.0% | |
| TAAAAATGTGGGGAGTGGAG+TGG | - | chr2_3:16856364-16856383 | Msa0281430:intron | 45.0% | |
| !!! | ACCATTTTCGAGTAGTGTCC+AGG | - | chr2_3:16856440-16856459 | Msa0281430:intron | 45.0% |
| TCCTGGACACTACTCGAAAA+TGG | + | chr2_3:16856444-16856463 | None:intergenic | 45.0% | |
| !! | GAAGCACTGACACAGACATT+GGG | - | chr2_3:16856620-16856639 | Msa0281430:intron | 45.0% |
| !! | GTCGGTGTCAAAAACCAACA+CGG | + | chr2_3:16856706-16856725 | None:intergenic | 45.0% |
| ! | CTTCAAATTGAAGGCATGGC+TGG | + | chr2_3:16856741-16856760 | None:intergenic | 45.0% |
| GGCACTTCAAATTGAAGGCA+TGG | + | chr2_3:16856745-16856764 | None:intergenic | 45.0% | |
| ! | GCACTGGCACTTCAAATTGA+AGG | + | chr2_3:16856750-16856769 | None:intergenic | 45.0% |
| TCTGATACCACATCTTCCGA+CGG | + | chr2_3:16857255-16857274 | None:intergenic | 45.0% | |
| !! | ATCTGGCTCTCTATTTGTGG+TGG | - | chr2_3:16857328-16857347 | Msa0281430:intron | 45.0% |
| TTATCCACCAGCAACAAGGT+AGG | + | chr2_3:16857650-16857669 | None:intergenic | 45.0% | |
| CAGATCAAACAGTCCATCAC+AGG | + | chr2_3:16857728-16857747 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTATATTAATTTTG+GGG | - | chr2_3:16854851-16854870 | Msa0281430:intron | 5.0% |
| !! | TATAAAAAGTTTAATAATAT+GGG | - | chr2_3:16856088-16856107 | Msa0281430:intron | 5.0% |
| CTTTGTAGCTCGTGGAACGA+TGG | - | chr2_3:16854123-16854142 | Msa0281430:three_prime_UTR | 50.0% | |
| CTGAAGACACTGAGCTGCAA+TGG | + | chr2_3:16854188-16854207 | None:intergenic | 50.0% | |
| GGTGTGATGGTCACAACTGT+AGG | + | chr2_3:16854239-16854258 | None:intergenic | 50.0% | |
| CATTGTGTTGAGTGCGAAGG+GGG | - | chr2_3:16854707-16854726 | Msa0281430:intron | 50.0% | |
| GCTACCCTTACCTTACAAGC+CGG | - | chr2_3:16854787-16854806 | Msa0281430:intron | 50.0% | |
| GGATGGTCATTGATCAGTGG+AGG | - | chr2_3:16855143-16855162 | Msa0281430:intron | 50.0% | |
| ! | AGTCGGCTTTGACACGTTCA+AGG | + | chr2_3:16855944-16855963 | None:intergenic | 50.0% |
| CAAAACTGCCAGTGTGAGGA+AGG | + | chr2_3:16856581-16856600 | None:intergenic | 50.0% | |
| TGTCTGTGTCAGTGCTTCGT+AGG | + | chr2_3:16856618-16856637 | None:intergenic | 50.0% | |
| !! | CGAAGCACTGACACAGACAT+TGG | - | chr2_3:16856619-16856638 | Msa0281430:intron | 50.0% |
| ! | GCGCACAAGTAAGTTGACCA+AGG | - | chr2_3:16857136-16857155 | Msa0281430:intron | 50.0% |
| AGTGAGAAACTGCCCCTTCT+GGG | + | chr2_3:16857614-16857633 | None:intergenic | 50.0% | |
| AAGTGAGAAACTGCCCCTTC+TGG | + | chr2_3:16857615-16857634 | None:intergenic | 50.0% | |
| AGAAGGGGCAGTTTCTCACT+TGG | - | chr2_3:16857614-16857633 | Msa0281430:five_prime_UTR | 50.0% | |
| GTTTCCTACCTTGTTGCTGG+TGG | - | chr2_3:16857643-16857662 | Msa0281430:five_prime_UTR | 50.0% | |
| GCTGAGTACACCGAGTTCAC+TGG | - | chr2_3:16854151-16854170 | Msa0281430:three_prime_UTR | 55.0% | |
| AGACACTGAGCTGCAATGGC+AGG | + | chr2_3:16854184-16854203 | None:intergenic | 55.0% | |
| AGCTGCCTAATTGCGGCGTT+TGG | - | chr2_3:16854655-16854674 | Msa0281430:intron | 55.0% | |
| GCTGCCTAATTGCGGCGTTT+GGG | - | chr2_3:16854656-16854675 | Msa0281430:intron | 55.0% | |
| GCAACCCAAACGCCGCAATT+AGG | + | chr2_3:16854663-16854682 | None:intergenic | 55.0% | |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | + | chr2_3:16854685-16854704 | None:intergenic | 55.0% |
| TCCTTGCACCTTCCTCACAC+TGG | - | chr2_3:16856570-16856589 | Msa0281430:intron | 55.0% | |
| CGGACAAAACTGCCAGTGTG+AGG | + | chr2_3:16856585-16856604 | None:intergenic | 55.0% | |
| !! | CGGCACTGACATGTGTGGTT+GGG | + | chr2_3:16856686-16856705 | None:intergenic | 55.0% |
| !! | ACGGCACTGACATGTGTGGT+TGG | + | chr2_3:16856687-16856706 | None:intergenic | 55.0% |
| !! | CAACACGGCACTGACATGTG+TGG | + | chr2_3:16856691-16856710 | None:intergenic | 55.0% |
| CACACATGTCAGTGCCGTGT+TGG | - | chr2_3:16856689-16856708 | Msa0281430:intron | 55.0% | |
| GGCTGGTGTCTGACATGTGT+CGG | + | chr2_3:16856724-16856743 | None:intergenic | 55.0% | |
| AGCAAGGAACACAGGTCCGT+CGG | - | chr2_3:16857236-16857255 | Msa0281430:intron | 55.0% | |
| ! | GCCAGTGTGAGGAAGGTGCA+AGG | + | chr2_3:16856574-16856593 | None:intergenic | 60.0% |
| CACAGGTCCGTCGGAAGATG+TGG | - | chr2_3:16857245-16857264 | Msa0281430:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 16853871 | 16857808 | 16853871 | ID=Msa0281430;Name=Msa0281430 |
| chr2_3 | mRNA | 16853871 | 16857808 | 16853871 | ID=Msa0281430-mRNA-1;Parent=Msa0281430;Name=Msa0281430-mRNA-1;_AED=0.23;_eAED=0.23;_QI=226|1|1|1|1|1|5|439|221 |
| chr2_3 | exon | 16853871 | 16854459 | 16853871 | ID=Msa0281430-mRNA-1:exon:6947;Parent=Msa0281430-mRNA-1 |
| chr2_3 | exon | 16854536 | 16854598 | 16854536 | ID=Msa0281430-mRNA-1:exon:6946;Parent=Msa0281430-mRNA-1 |
| chr2_3 | exon | 16855435 | 16855555 | 16855435 | ID=Msa0281430-mRNA-1:exon:6945;Parent=Msa0281430-mRNA-1 |
| chr2_3 | exon | 16855649 | 16855790 | 16855649 | ID=Msa0281430-mRNA-1:exon:6944;Parent=Msa0281430-mRNA-1 |
| chr2_3 | exon | 16857393 | 16857808 | 16857393 | ID=Msa0281430-mRNA-1:exon:6943;Parent=Msa0281430-mRNA-1 |
| chr2_3 | five_prime_UTR | 16857583 | 16857808 | 16857583 | ID=Msa0281430-mRNA-1:five_prime_utr;Parent=Msa0281430-mRNA-1 |
| chr2_3 | CDS | 16857393 | 16857582 | 16857393 | ID=Msa0281430-mRNA-1:cds;Parent=Msa0281430-mRNA-1 |
| chr2_3 | CDS | 16855649 | 16855790 | 16855649 | ID=Msa0281430-mRNA-1:cds;Parent=Msa0281430-mRNA-1 |
| chr2_3 | CDS | 16855435 | 16855555 | 16855435 | ID=Msa0281430-mRNA-1:cds;Parent=Msa0281430-mRNA-1 |
| chr2_3 | CDS | 16854536 | 16854598 | 16854536 | ID=Msa0281430-mRNA-1:cds;Parent=Msa0281430-mRNA-1 |
| chr2_3 | CDS | 16854310 | 16854459 | 16854310 | ID=Msa0281430-mRNA-1:cds;Parent=Msa0281430-mRNA-1 |
| chr2_3 | three_prime_UTR | 16853871 | 16854309 | 16853871 | ID=Msa0281430-mRNA-1:three_prime_utr;Parent=Msa0281430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
