AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0292120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292120 MtrunA17_Chr2g0312581 97.596 416 10 0 247 662 144 559 0.0 845
Msa0292120 MtrunA17_Chr2g0312581 96.203 158 6 0 1 158 1 158 4.36e-101 320
Msa0292120 MtrunA17_Chr2g0293981 43.646 362 175 6 249 596 293 639 4.09e-90 295
Msa0292120 MtrunA17_Chr2g0293981 27.451 153 111 0 6 158 153 305 3.91e-17 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292120 AT1G79030.2 73.397 421 104 6 247 661 7 425 0.0 604
Msa0292120 AT1G79030.1 73.397 421 104 6 247 661 142 560 0.0 602
Msa0292120 AT1G79030.1 58.974 156 64 0 3 158 1 156 1.17e-42 162
Msa0292120 AT1G16680.1 69.139 418 120 5 247 661 142 553 0.0 565
Msa0292120 AT1G16680.1 63.462 156 57 0 3 158 1 156 8.14e-51 185
Msa0292120 AT5G49580.3 40.196 408 186 9 250 633 292 665 1.26e-88 291
Msa0292120 AT5G49580.3 31.538 130 87 2 30 158 175 303 1.66e-15 80.9
Msa0292120 AT5G49580.1 40.196 408 186 9 250 633 292 665 1.26e-88 291
Msa0292120 AT5G49580.1 31.538 130 87 2 30 158 175 303 1.66e-15 80.9
Msa0292120 AT5G49580.2 36.237 287 136 6 250 520 292 547 1.86e-48 179
Msa0292120 AT5G49580.2 31.538 130 87 2 30 158 175 303 2.89e-15 79.7

Find 219 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGGGTCATTGGATTTA+TGG 0.133402 2_3:+40906048 Msa0292120:five_prime_UTR
TGAAAGAAATGCAAGGTTTA+TGG 0.156009 2_3:-40908677 None:intergenic
TGTATCTCTGTTCTTATATT+AGG 0.158216 2_3:+40911447 Msa0292120:three_prime_UTR
GTGAACTGCTGTGGGATTTC+TGG 0.175841 2_3:-40909757 None:intergenic
ATTGAAAGAGGGTATGAAAT+TGG 0.180774 2_3:-40905512 None:intergenic
ATTTATCTTAAACTGGTAAA+AGG 0.195207 2_3:+40905615 Msa0292120:five_prime_UTR
ATGCAGGGGTTGCTCGAAAT+TGG 0.197102 2_3:+40906312 Msa0292120:CDS
TGATAAGCAGAAAGAAATTT+TGG 0.214983 2_3:+40908900 Msa0292120:CDS
GCACGCTTGGTGGTATTAAT+TGG 0.222439 2_3:+40908595 Msa0292120:CDS
CCACCAAGCGTGCACGATTT+AGG 0.231062 2_3:-40908585 None:intergenic
TCCGATTGCTTCTGCTCTTC+AGG 0.238239 2_3:-40908757 None:intergenic
AGATGGATGGGTTGAATATA+AGG 0.245664 2_3:+40910257 Msa0292120:CDS
TGATCTCAGTAATCCATTTC+GGG 0.248137 2_3:-40911192 None:intergenic
TGGGAATCTACTTGAGTTAC+AGG 0.274469 2_3:-40910912 None:intergenic
TGAAATGTGGTAAAGAAAAT+TGG 0.282168 2_3:-40911295 None:intergenic
TTGATCTCAGTAATCCATTT+CGG 0.284846 2_3:-40911193 None:intergenic
GTTACTCACATTGATCATTA+AGG 0.285679 2_3:+40911377 Msa0292120:three_prime_UTR
GGTTTACGTGCTTGTTAGTA+TGG 0.289745 2_3:+40906474 Msa0292120:CDS
GGTTGAATATAAGGGATCTT+TGG 0.299665 2_3:+40910266 Msa0292120:CDS
TAGGGTTGTTCAATCAAGTT+TGG 0.309311 2_3:+40906185 Msa0292120:CDS
ATGAAGAAGAATATTTGATT+TGG 0.310444 2_3:-40905414 None:intergenic
AAGTAGATTCCCATGGGATT+TGG 0.312431 2_3:+40910922 Msa0292120:CDS
TGGGGTTGCTGTCCAATACT+TGG 0.313236 2_3:+40907154 Msa0292120:CDS
TTTCAGTCTTTCATTAAGTT+TGG 0.319308 2_3:+40906388 Msa0292120:CDS
TGGCATACATCCACAAAATA+AGG 0.320756 2_3:-40907217 None:intergenic
GAAGATCAAGATTGAAACTT+TGG 0.326405 2_3:-40905484 None:intergenic
CACCAAGCGTGCACGATTTA+GGG 0.330951 2_3:-40908584 None:intergenic
TGAAGTGATTTATCTTAAAC+TGG 0.332869 2_3:+40905608 Msa0292120:five_prime_UTR
AGTGCGGTAATTCACATGTT+TGG 0.344384 2_3:+40910053 Msa0292120:CDS
GGTGACAGCAGGTGGTTTAC+TGG 0.344960 2_3:-40908866 None:intergenic
TGCAGGGGTTGCTCGAAATT+GGG 0.345633 2_3:+40906313 Msa0292120:CDS
GATCAAGGTTATTTATTTGA+TGG 0.350421 2_3:+40906002 Msa0292120:five_prime_UTR
AAGATAAATCACTTCAATAA+AGG 0.355742 2_3:-40905601 None:intergenic
AAGCTCGGTCGGTGGGTGTT+AGG 0.357074 2_3:-40910854 None:intergenic
GTGAAATTTGTTGTAGATCA+AGG 0.358558 2_3:+40905987 Msa0292120:five_prime_UTR
CAGAGTCTGCGCACAGAGGC+AGG 0.360750 2_3:-40907587 None:intergenic
GATTCCACTTACAAACTTGA+TGG 0.361394 2_3:-40906136 None:intergenic
AAAGAGAGAAAGAGGCAAAA+TGG 0.365988 2_3:-40905875 None:intergenic
ATTTGACCTGTGGCTTCAAC+AGG 0.368409 2_3:+40910979 Msa0292120:CDS
AGGGTTGTTCAATCAAGTTT+GGG 0.374931 2_3:+40906186 Msa0292120:CDS
TTTACTCCATCCAATCCCTT+TGG 0.376262 2_3:-40911153 None:intergenic
CTTCAACAGGCTTTAGCATC+TGG 0.376602 2_3:+40910992 Msa0292120:CDS
GTCTTCATCCATCATCATTT+CGG 0.377560 2_3:-40910948 None:intergenic
TTACTCCATCCAATCCCTTT+GGG 0.377996 2_3:-40911152 None:intergenic
GTGCGGTAATTCACATGTTT+GGG 0.380056 2_3:+40910054 Msa0292120:CDS
CAATACTTGGGTTATACTCC+TGG 0.380895 2_3:+40907167 Msa0292120:CDS
TAGCATCACAAAAGGGTCAT+TGG 0.382212 2_3:+40906040 Msa0292120:five_prime_UTR
CAATCCCTCCGGCGGACTCT+AGG 0.390660 2_3:+40907663 Msa0292120:CDS
TGAATGTTTCAGGTTACTGC+TGG 0.391743 2_3:+40907134 Msa0292120:intron
TGACCTTCTTTCCCTTTGCT+TGG 0.393344 2_3:+40907691 Msa0292120:CDS
TCATGCAGGGAATGGCTTGT+AGG 0.396238 2_3:+40910831 Msa0292120:intron
TCATGGTGATGGAGGATATA+GGG 0.396369 2_3:+40906167 Msa0292120:exon
TTCAAATTGCCTCAAAAGAA+AGG 0.403167 2_3:+40911058 Msa0292120:CDS
TGGTTACTAAGGATTTCTTT+TGG 0.406880 2_3:+40911492 Msa0292120:three_prime_UTR
AAATCAGAACTAATCTGAAC+TGG 0.407794 2_3:-40907944 None:intergenic
TTGAAAGAGGGTATGAAATT+GGG 0.412990 2_3:-40905511 None:intergenic
GGCATTGGCCGATGGTATGC+AGG 0.413497 2_3:+40906296 Msa0292120:CDS
TTTGTTTAAGAAACCCGAAA+TGG 0.414667 2_3:+40911179 Msa0292120:three_prime_UTR
GTCTTGCTGAAAAGCTCAAT+AGG 0.415248 2_3:+40911102 Msa0292120:exon
ATCAAGTTTGGGGATGGCTT+CGG 0.416194 2_3:+40906197 Msa0292120:CDS
CTTAATCATTATGATGCCCT+TGG 0.419772 2_3:+40908985 Msa0292120:CDS
ATAAGAACAGAGATACAATA+AGG 0.420872 2_3:-40911441 None:intergenic
CCTAAATCGTGCACGCTTGG+TGG 0.422799 2_3:+40908585 Msa0292120:CDS
TGCTTTGGCCTTGCTCCTGT+TGG 0.422898 2_3:-40910083 None:intergenic
GATGGATGGGTTGAATATAA+GGG 0.424705 2_3:+40910258 Msa0292120:CDS
CTAGAGTCCGCCGGAGGGAT+TGG 0.424803 2_3:-40907662 None:intergenic
CTGTATCCGTCTGGATTCTT+CGG 0.424876 2_3:-40910023 None:intergenic
ACTTCCATCAAGTTTGTAAG+TGG 0.425991 2_3:+40906132 Msa0292120:five_prime_UTR
GACCTGACACCATCTTGCTT+TGG 0.429270 2_3:-40910098 None:intergenic
TGGAAGGACTCTGCTGTAAG+GGG 0.429309 2_3:+40906364 Msa0292120:CDS
GTCATGGTGATGGAGGATAT+AGG 0.429732 2_3:+40906166 Msa0292120:exon
AATTAAAGACTTCAAATTCA+CGG 0.434500 2_3:-40905931 None:intergenic
TTGGAAGGACTCTGCTGTAA+GGG 0.436084 2_3:+40906363 Msa0292120:CDS
AAGTCTTTAATTTATGATGT+TGG 0.437191 2_3:+40905942 Msa0292120:five_prime_UTR
ATCAATGAAGAATGAGGAAA+AGG 0.437852 2_3:-40905458 None:intergenic
CTCCCTAAATCGTGCACGCT+TGG 0.443827 2_3:+40908582 Msa0292120:CDS
GAAACTTCAATGTGCATATG+AGG 0.445625 2_3:+40909512 Msa0292120:CDS
CACAGTTCGAGCACGCCAAC+AGG 0.445831 2_3:-40906233 None:intergenic
TGCAAATTCTCAGATTCAAC+TGG 0.451152 2_3:-40908829 None:intergenic
TTGAATGTGAGAGTATTTAG+TGG 0.453509 2_3:+40905820 Msa0292120:five_prime_UTR
TTTGGAAGGACTCTGCTGTA+AGG 0.454087 2_3:+40906362 Msa0292120:CDS
TTACTGAGATCAAAACTAGA+AGG 0.456205 2_3:+40911203 Msa0292120:three_prime_UTR
CACCTCGTGGCCAATCCCTC+CGG 0.457668 2_3:+40907652 Msa0292120:CDS
CCAAGCCAACCATGTTTACA+TGG 0.459618 2_3:-40910877 None:intergenic
CTTTGTGCACTGTATCCGTC+TGG 0.460373 2_3:-40910032 None:intergenic
GGATTGAACAATGAAAACTT+TGG 0.461683 2_3:-40905393 None:intergenic
TGATGATTTAGCATCACAAA+AGG 0.463802 2_3:+40906032 Msa0292120:five_prime_UTR
TCTGACTTCGATGTATTGCT+TGG 0.466273 2_3:+40906453 Msa0292120:CDS
CCATGTAAACATGGTTGGCT+TGG 0.467923 2_3:+40910877 Msa0292120:CDS
TGAGGAAAAGGGGTTTCAAA+AGG 0.468417 2_3:-40905446 None:intergenic
TTCATTGCCTACATCCCAAA+GGG 0.469914 2_3:+40911138 Msa0292120:three_prime_UTR
AGGAGGAAAGCTTGTAACTT+AGG 0.471670 2_3:-40908004 None:intergenic
AATATTTGATGTATCAGAAT+GGG 0.474275 2_3:+40910428 Msa0292120:CDS
ATCAAGGTTATTTATTTGAT+GGG 0.474990 2_3:+40906003 Msa0292120:five_prime_UTR
GAAGCAATCGGAGACAGTTA+TGG 0.475066 2_3:+40908768 Msa0292120:CDS
ATCCCACAGCAGTTCACATC+AGG 0.475853 2_3:+40909763 Msa0292120:CDS
CAGGAGTATAACCCAAGTAT+TGG 0.476147 2_3:-40907166 None:intergenic
TGTTCAATCAAGTTTGGGGA+TGG 0.476331 2_3:+40906191 Msa0292120:CDS
CTGTTGGCGTGCTCGAACTG+TGG 0.477803 2_3:+40906234 Msa0292120:CDS
TGCCTACATCCCAAAGGGAT+TGG 0.478963 2_3:+40911143 Msa0292120:three_prime_UTR
GCTTTCCTCCTCATTATCCT+AGG 0.480037 2_3:+40908016 Msa0292120:CDS
GGCCAAAGCAAGATGGTGTC+AGG 0.480599 2_3:+40910096 Msa0292120:CDS
CGATGTTTATTGAACGGCAT+TGG 0.480918 2_3:+40906281 Msa0292120:CDS
ATGTTTGGGTATGCACCAAC+AGG 0.481258 2_3:+40910068 Msa0292120:CDS
TTTATCTTAAACTGGTAAAA+GGG 0.481929 2_3:+40905616 Msa0292120:five_prime_UTR
TCAGATTCAACTGGTGGGAT+AGG 0.484618 2_3:-40908820 None:intergenic
GAGAGTATTTAGTGGTATCA+TGG 0.485450 2_3:+40905828 Msa0292120:five_prime_UTR
TCAATGAAGAATGAGGAAAA+GGG 0.490090 2_3:-40905457 None:intergenic
ATCAGAATGGGCTATATGTC+AGG 0.494913 2_3:+40910440 Msa0292120:CDS
TCTTGCTGAAAAGCTCAATA+GGG 0.496208 2_3:+40911103 Msa0292120:exon
CAAGTAAAAGTGGGATGGCT+TGG 0.496912 2_3:+40908643 Msa0292120:CDS
CCCTAAAATCTGATTGAAAG+AGG 0.500378 2_3:-40905524 None:intergenic
GAGTCTGCGCACAGAGGCAG+GGG 0.503568 2_3:-40907585 None:intergenic
GTAAAGAAAATTGGCAACCT+TGG 0.506912 2_3:-40911286 None:intergenic
ATCCAATCCCTTTGGGATGT+AGG 0.511524 2_3:-40911145 None:intergenic
AGCTTCCATGTAAACATGGT+TGG 0.511891 2_3:+40910872 Msa0292120:CDS
TTAATTTATGATGTTGGAGT+AGG 0.513450 2_3:+40905948 Msa0292120:five_prime_UTR
AGAGTCTGCGCACAGAGGCA+GGG 0.513766 2_3:-40907586 None:intergenic
TCAAATTGCCTCAAAAGAAA+GGG 0.520660 2_3:+40911059 Msa0292120:CDS
TCCTGAAGAGCAGAAGCAAT+CGG 0.523623 2_3:+40908756 Msa0292120:CDS
GAATGTTTCAGGTTACTGCT+GGG 0.526617 2_3:+40907135 Msa0292120:intron
CCTCAAAACGCAGGAAGAGT+TGG 0.527025 2_3:+40911029 Msa0292120:CDS
AATACTTGGGTTATACTCCT+GGG 0.528723 2_3:+40907168 Msa0292120:CDS
TATGCCAACTTTCTGATCAC+AGG 0.529729 2_3:+40907233 Msa0292120:CDS
ACAGGATTACTACTCATAGT+TGG 0.530073 2_3:+40907251 Msa0292120:CDS
TACATCCCAAAGGGATTGGA+TGG 0.530497 2_3:+40911147 Msa0292120:three_prime_UTR
ACCATGTTTACATGGAAGCT+CGG 0.530586 2_3:-40910869 None:intergenic
TAATCCTGTGATCAGAAAGT+TGG 0.531592 2_3:-40907237 None:intergenic
AAATATTTGATGTATCAGAA+TGG 0.531805 2_3:+40910427 Msa0292120:CDS
CATAACTCTAAAATGAATGC+TGG 0.533736 2_3:-40911574 None:intergenic
GGGGTTGCTGTCCAATACTT+GGG 0.535229 2_3:+40907155 Msa0292120:CDS
AAATCCTACCTAGGATAATG+AGG 0.537407 2_3:-40908024 None:intergenic
GTATTCTGTCCAAGTAAAAG+TGG 0.543915 2_3:+40908633 Msa0292120:CDS
GGTCATTGGATTTATGGTGA+TGG 0.544341 2_3:+40906054 Msa0292120:five_prime_UTR
TTTGGACGCCGAAATGATGA+TGG 0.545956 2_3:+40910940 Msa0292120:CDS
TGGAGCATCAATGAAGAATG+AGG 0.546792 2_3:-40905464 None:intergenic
CACGACGTGATGTAAGTGTA+TGG 0.547917 2_3:-40907610 None:intergenic
TATTGAACGGCATTGGCCGA+TGG 0.550013 2_3:+40906288 Msa0292120:CDS
GAGGAAAAGGGGTTTCAAAA+GGG 0.552128 2_3:-40905445 None:intergenic
AGCAAAGGATGGAGATGGAT+GGG 0.552152 2_3:+40910245 Msa0292120:CDS
GCACCAAGCAAAGGGAAAGA+AGG 0.552445 2_3:-40907694 None:intergenic
ATTAAGAAAAGAAGAATCCA+TGG 0.556650 2_3:+40909721 Msa0292120:CDS
GATGATTTAGCATCACAAAA+GGG 0.556732 2_3:+40906033 Msa0292120:five_prime_UTR
CTAAAGCCTGTTGAAGCCAC+AGG 0.559744 2_3:-40910985 None:intergenic
GCATTGGCCGATGGTATGCA+GGG 0.560371 2_3:+40906297 Msa0292120:CDS
CATAAAATATATGTACACTA+AGG 0.560794 2_3:+40911322 Msa0292120:three_prime_UTR
ATTTCGGCGTCCAAATCCCA+TGG 0.562239 2_3:-40910932 None:intergenic
AAGCAAAGGATGGAGATGGA+TGG 0.562575 2_3:+40910244 Msa0292120:CDS
ATACGACGGCACCAAGCAAA+GGG 0.563249 2_3:-40907702 None:intergenic
AAACTGCGATGTTTATTGAA+CGG 0.563453 2_3:+40906275 Msa0292120:CDS
CGCGGCCTAGAGTCCGCCGG+AGG 0.565472 2_3:-40907668 None:intergenic
TACATGGAAGCTCGGTCGGT+GGG 0.566355 2_3:-40910861 None:intergenic
GGAAGGACTCTGCTGTAAGG+GGG 0.567571 2_3:+40906365 Msa0292120:CDS
TACCTGATGTGAACTGCTGT+GGG 0.569328 2_3:-40909765 None:intergenic
CCTAAAATCTGATTGAAAGA+GGG 0.569348 2_3:-40905523 None:intergenic
GCAGGGGTTGCTCGAAATTG+GGG 0.573947 2_3:+40906314 Msa0292120:CDS
CAGTTTCATCAAGCAAAGGA+TGG 0.576801 2_3:+40910234 Msa0292120:CDS
TTCTTCATCGTCACACCTCG+TGG 0.577266 2_3:+40907639 Msa0292120:CDS
GATACGACGGCACCAAGCAA+AGG 0.577612 2_3:-40907703 None:intergenic
ATCTGTAGAGGTCATGGTGA+TGG 0.577651 2_3:+40906156 Msa0292120:exon
CATCAAGCAAAGGATGGAGA+TGG 0.583990 2_3:+40910240 Msa0292120:CDS
GGATTACTACTCATAGTTGG+AGG 0.586894 2_3:+40907254 Msa0292120:CDS
TGTCATTTGAAAGAAATGCA+AGG 0.588628 2_3:-40908684 None:intergenic
AAATTCTCAGATTCAACTGG+TGG 0.588839 2_3:-40908826 None:intergenic
CTGTCAGTTTCATCAAGCAA+AGG 0.589407 2_3:+40910230 Msa0292120:CDS
TTTGTGGCGGCTAAATCCAA+GGG 0.591814 2_3:-40909001 None:intergenic
GTGGTGAATTATAAGAGCCA+AGG 0.591876 2_3:+40911269 Msa0292120:three_prime_UTR
TTAAACTGGTAAAAGGGTCA+AGG 0.592114 2_3:+40905622 Msa0292120:five_prime_UTR
CAATGAAGAATGAGGAAAAG+GGG 0.595329 2_3:-40905456 None:intergenic
CGCCGGAGGGATTGGCCACG+AGG 0.595615 2_3:-40907654 None:intergenic
GAAATGCAAGGTTTATGGCA+AGG 0.596267 2_3:-40908672 None:intergenic
TGTTTACATGGAAGCTCGGT+CGG 0.599305 2_3:-40910865 None:intergenic
ATTCAATTGATGAAATGAGA+AGG 0.599840 2_3:+40908950 Msa0292120:CDS
CTGTCCAAGTAAAAGTGGGA+TGG 0.600909 2_3:+40908638 Msa0292120:CDS
TGTAGAGGTCATGGTGATGG+AGG 0.601487 2_3:+40906159 Msa0292120:exon
TTTCAGAACTGAGCATGAGT+CGG 0.608276 2_3:+40911401 Msa0292120:three_prime_UTR
TTACATGGAAGCTCGGTCGG+TGG 0.608397 2_3:-40910862 None:intergenic
TTTGCGAGTCCTCAAAACGC+AGG 0.609028 2_3:+40911020 Msa0292120:CDS
ACGAAGAGGCATTTGACCTG+TGG 0.610097 2_3:+40910969 Msa0292120:CDS
GAGCAACCCCTGCATACCAT+CGG 0.610183 2_3:-40906304 None:intergenic
TACACTTACATCACGTCGTG+TGG 0.612359 2_3:+40907613 Msa0292120:CDS
TTACCTGATGTGAACTGCTG+TGG 0.612719 2_3:-40909766 None:intergenic
GTAACTCAAGTAGATTCCCA+TGG 0.614310 2_3:+40910915 Msa0292120:CDS
GGAGCAAGGCCAAAGCAAGA+TGG 0.614781 2_3:+40910089 Msa0292120:CDS
AATTCTCAGATTCAACTGGT+GGG 0.617335 2_3:-40908825 None:intergenic
GGGTTGTTCAATCAAGTTTG+GGG 0.617373 2_3:+40906187 Msa0292120:CDS
TTATTAGCATGTATATACAA+AGG 0.617487 2_3:-40911516 None:intergenic
CTGCTTATCAACAACTGATG+TGG 0.617904 2_3:-40908887 None:intergenic
AAGGAATTGCTAGCAACACT+CGG 0.618717 2_3:+40911222 Msa0292120:three_prime_UTR
TTTGTAAGTGGAATCTGTAG+AGG 0.618896 2_3:+40906144 Msa0292120:five_prime_UTR
TGAGTAACTCCTATAAACCT+AGG 0.619287 2_3:-40911362 None:intergenic
ACAACTGATGTGGTGACAGC+AGG 0.620614 2_3:-40908877 None:intergenic
ATCTACTTGAGTTACAGGAA+TGG 0.621712 2_3:-40910907 None:intergenic
TAGTGACCATAAAAGAAGAG+AGG 0.622404 2_3:+40907322 Msa0292120:CDS
TTTCATTGCCTACATCCCAA+AGG 0.622491 2_3:+40911137 Msa0292120:three_prime_UTR
TAACTCAAGTAGATTCCCAT+GGG 0.623997 2_3:+40910916 Msa0292120:CDS
TATTCTGTCCAAGTAAAAGT+GGG 0.624209 2_3:+40908634 Msa0292120:CDS
AATGTTTCAGGTTACTGCTG+GGG 0.626076 2_3:+40907136 Msa0292120:intron
TCACGCGGCCTAGAGTCCGC+CGG 0.626198 2_3:-40907671 None:intergenic
AGTGGAATCTGTAGAGGTCA+TGG 0.628752 2_3:+40906150 Msa0292120:exon
GGTATGCACCAACAGGAGCA+AGG 0.632037 2_3:+40910075 Msa0292120:CDS
CGGATACAGTGCACAAAGTG+CGG 0.640827 2_3:+40910037 Msa0292120:CDS
GATGATGGATGAAGACGAAG+AGG 0.646374 2_3:+40910955 Msa0292120:CDS
GCGGCCTAGAGTCCGCCGGA+GGG 0.648247 2_3:-40907667 None:intergenic
TTTCGGCGTCCAAATCCCAT+GGG 0.650751 2_3:-40910931 None:intergenic
CTCGTGGCCAATCCCTCCGG+CGG 0.652121 2_3:+40907655 Msa0292120:CDS
GACAGAATACATAGCATATG+CGG 0.653102 2_3:-40908620 None:intergenic
TCCGCACAAACAAAAGCACG+TGG 0.655503 2_3:-40910399 None:intergenic
TGATGCTCTTGCTTATAATG+TGG 0.655740 2_3:+40906416 Msa0292120:CDS
CATTGGCCGATGGTATGCAG+GGG 0.658782 2_3:+40906298 Msa0292120:CDS
ACCGAGCTTCCATGTAAACA+TGG 0.658792 2_3:+40910868 Msa0292120:CDS
ATCGTTCCGAAGAATCCAGA+CGG 0.659900 2_3:+40910017 Msa0292120:CDS
GGTCACGAAAAGATGCCTGT+TGG 0.663139 2_3:+40906218 Msa0292120:CDS
CAAAGGGAAAGAAGGTCACG+CGG 0.671294 2_3:-40907686 None:intergenic
TCCTACCTAGGATAATGAGG+AGG 0.673070 2_3:-40908021 None:intergenic
ACTGATGTGGTGACAGCAGG+TGG 0.695798 2_3:-40908874 None:intergenic
GATGAGTCATGAGAGCATTG+TGG 0.727305 2_3:+40911250 Msa0292120:three_prime_UTR
CCGCACAAACAAAAGCACGT+GGG 0.749499 2_3:-40910398 None:intergenic
ATGGCAGAGTCTGCGCACAG+AGG 0.760839 2_3:-40907591 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTATTATATAAATT+AGG - chr2_3:40908451-40908470 None:intergenic 0.0%
!!! TTTTAATGAAAATTCATAAA+TGG - chr2_3:40906574-40906593 None:intergenic 10.0%
!!! TTACATTATCTTTGATTTTT+TGG + chr2_3:40906344-40906363 Msa0292120:CDS 15.0%
!!! ATTTTAAGAAAAAAAGTCAA+AGG - chr2_3:40906710-40906729 None:intergenic 15.0%
!!! ATTATACAAATTTTATGTAG+AGG + chr2_3:40906738-40906757 Msa0292120:intron 15.0%
!! TTTAATATTTGTTTGTGTTT+GGG + chr2_3:40907827-40907846 Msa0292120:intron 15.0%
!! AAGGAAAAAAAAAATCAAAT+AGG - chr2_3:40907859-40907878 None:intergenic 15.0%
!! AAGCATAAAAAATTGAAAAT+GGG - chr2_3:40907910-40907929 None:intergenic 15.0%
!! AAAGCATAAAAAATTGAAAA+TGG - chr2_3:40907911-40907930 None:intergenic 15.0%
!!! TTTTCAATTTTTTATGCTTT+TGG + chr2_3:40907911-40907930 Msa0292120:intron 15.0%
!!! TATTATAAGAACTTTTAACA+AGG - chr2_3:40908358-40908377 None:intergenic 15.0%
!! CTATCTTATAATTGATATAT+TGG + chr2_3:40909562-40909581 Msa0292120:intron 15.0%
!! TCCTTAATATATAATCTATT+AGG + chr2_3:40909860-40909879 Msa0292120:intron 15.0%
!! TCCTAATAGATTATATATTA+AGG - chr2_3:40909864-40909883 None:intergenic 15.0%
!!! TTTTTCTTTAATTGTTCAAA+AGG - chr2_3:40909967-40909986 None:intergenic 15.0%
!! TTGAACAATTAAAGAAAAAA+AGG + chr2_3:40909968-40909987 Msa0292120:intron 15.0%
!! ATGAAGAAGAATATTTGATT+TGG - chr2_3:40905417-40905436 None:intergenic 20.0%
!!! TTCAAGTTCATATTTTTGAT+GGG + chr2_3:40905570-40905589 Msa0292120:five_prime_UTR 20.0%
!! AAGATAAATCACTTCAATAA+AGG - chr2_3:40905604-40905623 None:intergenic 20.0%
!! ATTTATCTTAAACTGGTAAA+AGG + chr2_3:40905615-40905634 Msa0292120:five_prime_UTR 20.0%
!! TTTATCTTAAACTGGTAAAA+GGG + chr2_3:40905616-40905635 Msa0292120:five_prime_UTR 20.0%
!! AATTAAAGACTTCAAATTCA+CGG - chr2_3:40905934-40905953 None:intergenic 20.0%
!!! AAGTCTTTAATTTATGATGT+TGG + chr2_3:40905942-40905961 Msa0292120:five_prime_UTR 20.0%
!! ATCAAGGTTATTTATTTGAT+GGG + chr2_3:40906003-40906022 Msa0292120:five_prime_UTR 20.0%
!!! ATTATCTTTGATTTTTTGGA+AGG + chr2_3:40906348-40906367 Msa0292120:CDS 20.0%
!!! ATGAATTTTCATTAAAACTG+CGG + chr2_3:40906577-40906596 Msa0292120:intron 20.0%
!!! ACATTTTACAATTACCTTAT+TGG + chr2_3:40906643-40906662 Msa0292120:intron 20.0%
!!! ATGATTTTAATTTATCTCTG+TGG + chr2_3:40906937-40906956 Msa0292120:intron 20.0%
!!! CAATATTTTGAACTCAAATT+AGG - chr2_3:40907017-40907036 None:intergenic 20.0%
!!! AATTTGAGTTCAAAATATTG+TGG + chr2_3:40907017-40907036 Msa0292120:intron 20.0%
!!! TCATATTGAAATTTTGATTC+TGG + chr2_3:40907484-40907503 Msa0292120:intron 20.0%
!! AACAACATATTTAACACTAA+AGG - chr2_3:40907779-40907798 None:intergenic 20.0%
!! GTTTAATATTTGTTTGTGTT+TGG + chr2_3:40907826-40907845 Msa0292120:intron 20.0%
!! GTTAATATAATGTTCTATGA+CGG + chr2_3:40908278-40908297 Msa0292120:intron 20.0%
!!! TTTTAACAAGGATGAAAAAA+TGG - chr2_3:40908346-40908365 None:intergenic 20.0%
!! AGTTCTTATAATAAAGTCAT+TGG + chr2_3:40908365-40908384 Msa0292120:intron 20.0%
!! GTTCTTATAATAAAGTCATT+GGG + chr2_3:40908366-40908385 Msa0292120:intron 20.0%
!! AAATATTTGATGTATCAGAA+TGG + chr2_3:40910427-40910446 Msa0292120:CDS 20.0%
!! AATATTTGATGTATCAGAAT+GGG + chr2_3:40910428-40910447 Msa0292120:CDS 20.0%
!!! TATTTTATGGATATGAAATG+TGG - chr2_3:40911311-40911330 None:intergenic 20.0%
!!! CTTAGTGTACATATATTTTA+TGG - chr2_3:40911324-40911343 None:intergenic 20.0%
!! CATAAAATATATGTACACTA+AGG + chr2_3:40911322-40911341 Msa0292120:three_prime_UTR 20.0%
!! TTATTAGCATGTATATACAA+AGG - chr2_3:40911519-40911538 None:intergenic 20.0%
!!! TTGAAAAGTTTTGTAAAGAG+AGG - chr2_3:40905310-40905329 None:intergenic 25.0%
! CATCAAAAATATGAACTTGA+AGG - chr2_3:40905571-40905590 None:intergenic 25.0%
!!! CTTCAAGTTCATATTTTTGA+TGG + chr2_3:40905569-40905588 Msa0292120:five_prime_UTR 25.0%
! TGAAGTGATTTATCTTAAAC+TGG + chr2_3:40905608-40905627 Msa0292120:five_prime_UTR 25.0%
!!! ATAGTGTTAGATTTTTCAGT+AGG + chr2_3:40905648-40905667 Msa0292120:five_prime_UTR 25.0%
!!! TAGTGTTAGATTTTTCAGTA+GGG + chr2_3:40905649-40905668 Msa0292120:five_prime_UTR 25.0%
!! ACATTGTGTTTTGTGAAAAA+GGG + chr2_3:40905700-40905719 Msa0292120:five_prime_UTR 25.0%
!!! CTTTGTGTTGTTTTGTTTTT+AGG + chr2_3:40905734-40905753 Msa0292120:five_prime_UTR 25.0%
!! TTTTAGGCTTTTATGAATAG+TGG + chr2_3:40905750-40905769 Msa0292120:five_prime_UTR 25.0%
! TTAATTTATGATGTTGGAGT+AGG + chr2_3:40905948-40905967 Msa0292120:five_prime_UTR 25.0%
! GATCAAGGTTATTTATTTGA+TGG + chr2_3:40906002-40906021 Msa0292120:five_prime_UTR 25.0%
! TTTCAGTCTTTCATTAAGTT+TGG + chr2_3:40906388-40906407 Msa0292120:CDS 25.0%
! AGTAAGAACAAAAATTCAGA+CGG - chr2_3:40906518-40906537 None:intergenic 25.0%
!! CTGAATTTTTGTTCTTACTT+TGG + chr2_3:40906519-40906538 Msa0292120:intron 25.0%
!!! ATATTCTAGAATGACCAATA+AGG - chr2_3:40906660-40906679 None:intergenic 25.0%
!! TTACTCTCCTAAATTTTGAA+GGG - chr2_3:40906815-40906834 None:intergenic 25.0%
!! ATTACTCTCCTAAATTTTGA+AGG - chr2_3:40906816-40906835 None:intergenic 25.0%
! TTCAAAATTTAGGAGAGTAA+TGG + chr2_3:40906815-40906834 Msa0292120:intron 25.0%
!!! CATTGAGTTCTAATTTTAGT+CGG + chr2_3:40906909-40906928 Msa0292120:intron 25.0%
!!! TTTTTGCTATCCTTATTTTG+TGG + chr2_3:40907207-40907226 Msa0292120:CDS 25.0%
!!! ATGATGCTTTTATTGTTGTT+TGG + chr2_3:40907278-40907297 Msa0292120:CDS 25.0%
!!! TGATGCTTTTATTGTTGTTT+GGG + chr2_3:40907279-40907298 Msa0292120:CDS 25.0%
! AGTGTATACAATACAAAAGA+CGG - chr2_3:40907365-40907384 None:intergenic 25.0%
! TAAAATCCACAAACTCAAAA+TGG - chr2_3:40907741-40907760 None:intergenic 25.0%
!!! TTTTGAGTTTGTGGATTTTA+AGG + chr2_3:40907741-40907760 Msa0292120:intron 25.0%
! AATAATCATGCAACAGAAAA+AGG - chr2_3:40907878-40907897 None:intergenic 25.0%
!!! TTCTGATTTGTATTTTAAGC+AGG + chr2_3:40907958-40907977 Msa0292120:CDS 25.0%
! AAAAGTAAAAAATCCTACCT+AGG - chr2_3:40908036-40908055 None:intergenic 25.0%
! AAACAAAATTTCAGGATTGT+AGG - chr2_3:40908535-40908554 None:intergenic 25.0%
! TGATTGACAAACAAAATTTC+AGG - chr2_3:40908543-40908562 None:intergenic 25.0%
!! TTTTGAATTTTCTGCTTCAA+TGG + chr2_3:40908707-40908726 Msa0292120:CDS 25.0%
!! TGATAAGCAGAAAGAAATTT+TGG + chr2_3:40908900-40908919 Msa0292120:CDS 25.0%
! ATTCAATTGATGAAATGAGA+AGG + chr2_3:40908950-40908969 Msa0292120:CDS 25.0%
!! ATTTTTGACCTATAGTAATG+TGG + chr2_3:40909178-40909197 Msa0292120:intron 25.0%
! AGTTAATACCACATTACTAT+AGG - chr2_3:40909189-40909208 None:intergenic 25.0%
!! TATTAACTAGCTGACTTAAT+GGG + chr2_3:40909201-40909220 Msa0292120:intron 25.0%
!!! TACTGTTCAAGTTTTTAAGA+AGG - chr2_3:40909326-40909345 None:intergenic 25.0%
!! TGTTATCATTTTCATCATGT+AGG + chr2_3:40909431-40909450 Msa0292120:intron 25.0%
! ATTAAGAAAAGAAGAATCCA+TGG + chr2_3:40909721-40909740 Msa0292120:CDS 25.0%
! TGGAATTTACAAGAATATGT+CGG - chr2_3:40909816-40909835 None:intergenic 25.0%
!! TTCTTTTGCATTGTAATGAA+CGG - chr2_3:40909929-40909948 None:intergenic 25.0%
! TTGTTCAAAAGGTAAATGAA+GGG - chr2_3:40909956-40909975 None:intergenic 25.0%
! ATTGTTCAAAAGGTAAATGA+AGG - chr2_3:40909957-40909976 None:intergenic 25.0%
!! TACTCTACAAGCAATATTTT+TGG + chr2_3:40910469-40910488 Msa0292120:intron 25.0%
!!! TACAAAGTATTGTCAAATAG+CGG + chr2_3:40910603-40910622 Msa0292120:intron 25.0%
!!! TGATACAGTAGTTTGTTTAT+AGG + chr2_3:40910767-40910786 Msa0292120:intron 25.0%
! TGAAATGTGGTAAAGAAAAT+TGG - chr2_3:40911298-40911317 None:intergenic 25.0%
! ATAAGAACAGAGATACAATA+AGG - chr2_3:40911444-40911463 None:intergenic 25.0%
! TGTATCTCTGTTCTTATATT+AGG + chr2_3:40911447-40911466 Msa0292120:three_prime_UTR 25.0%
GGATTGAACAATGAAAACTT+TGG - chr2_3:40905396-40905415 None:intergenic 30.0%
TCAATGAAGAATGAGGAAAA+GGG - chr2_3:40905460-40905479 None:intergenic 30.0%
ATCAATGAAGAATGAGGAAA+AGG - chr2_3:40905461-40905480 None:intergenic 30.0%
GAAGATCAAGATTGAAACTT+TGG - chr2_3:40905487-40905506 None:intergenic 30.0%
! TTGAAAGAGGGTATGAAATT+GGG - chr2_3:40905514-40905533 None:intergenic 30.0%
! ATTGAAAGAGGGTATGAAAT+TGG - chr2_3:40905515-40905534 None:intergenic 30.0%
CCTAAAATCTGATTGAAAGA+GGG - chr2_3:40905526-40905545 None:intergenic 30.0%
! CCTCTTTCAATCAGATTTTA+GGG + chr2_3:40905524-40905543 Msa0292120:five_prime_UTR 30.0%
! TTAGGGTTTTTCACTGTAAA+AGG + chr2_3:40905541-40905560 Msa0292120:five_prime_UTR 30.0%
! TAGGGTTTTTCACTGTAAAA+GGG + chr2_3:40905542-40905561 Msa0292120:five_prime_UTR 30.0%
! GACATTGTGTTTTGTGAAAA+AGG + chr2_3:40905699-40905718 Msa0292120:five_prime_UTR 30.0%
!!! ATGAATAGTGGTTGCTTTTT+TGG + chr2_3:40905762-40905781 Msa0292120:five_prime_UTR 30.0%
!!! GCTTTTTTGGAAGCTTATTT+CGG + chr2_3:40905775-40905794 Msa0292120:five_prime_UTR 30.0%
!! TTGAATGTGAGAGTATTTAG+TGG + chr2_3:40905820-40905839 Msa0292120:five_prime_UTR 30.0%
AATCCAAAAAAGAGAGAAAG+AGG - chr2_3:40905886-40905905 None:intergenic 30.0%
!! GTGAAATTTGTTGTAGATCA+AGG + chr2_3:40905987-40906006 Msa0292120:five_prime_UTR 30.0%
TGATGATTTAGCATCACAAA+AGG + chr2_3:40906032-40906051 Msa0292120:five_prime_UTR 30.0%
GATGATTTAGCATCACAAAA+GGG + chr2_3:40906033-40906052 Msa0292120:five_prime_UTR 30.0%
!!! TAGTTTTAGTCTTAGTAGTG+AGG + chr2_3:40906105-40906124 Msa0292120:five_prime_UTR 30.0%
AAACTGCGATGTTTATTGAA+CGG + chr2_3:40906275-40906294 Msa0292120:CDS 30.0%
GTAAGAACAAAAATTCAGAC+GGG - chr2_3:40906517-40906536 None:intergenic 30.0%
! GCTTTAAGCTTATCATTCAA+TGG + chr2_3:40906613-40906632 Msa0292120:intron 30.0%
!! GGTCATTCTAGAATATAAAG+TGG + chr2_3:40906664-40906683 Msa0292120:intron 30.0%
! AAATTTAGGAGAGTAATGGA+TGG + chr2_3:40906819-40906838 Msa0292120:intron 30.0%
ACAGTTCAATTGAATGTTTC+AGG + chr2_3:40907124-40907143 Msa0292120:intron 30.0%
ACAAAAGACGGATATACAAT+AGG - chr2_3:40907353-40907372 None:intergenic 30.0%
AAATCAGAACTAATCTGAAC+TGG - chr2_3:40907947-40907966 None:intergenic 30.0%
TTGCTACCACTTCATTATAT+TGG + chr2_3:40908145-40908164 Msa0292120:intron 30.0%
! GGATTTTGTCTTGAGTATAT+GGG + chr2_3:40908387-40908406 Msa0292120:intron 30.0%
TATTCTGTCCAAGTAAAAGT+GGG + chr2_3:40908634-40908653 Msa0292120:CDS 30.0%
TGAAAGAAATGCAAGGTTTA+TGG - chr2_3:40908680-40908699 None:intergenic 30.0%
! TGTCATTTGAAAGAAATGCA+AGG - chr2_3:40908687-40908706 None:intergenic 30.0%
!!! CAGTTTTGAAAAAGGAATAC+CGG + chr2_3:40909037-40909056 Msa0292120:CDS 30.0%
! TAACGATGAATACCTTTTTC+CGG - chr2_3:40909059-40909078 None:intergenic 30.0%
! GTATTAACTAGCTGACTTAA+TGG + chr2_3:40909200-40909219 Msa0292120:intron 30.0%
TGATGAAAATGATAACAAGC+TGG - chr2_3:40909428-40909447 None:intergenic 30.0%
GTGCATCCTGATAAAAATAT+GGG + chr2_3:40909462-40909481 Msa0292120:CDS 30.0%
AAGTTTCATCCTTGTTAAAG+AGG - chr2_3:40909656-40909675 None:intergenic 30.0%
!! AAAAAAAGGTACTCTATTGC+AGG + chr2_3:40909982-40910001 Msa0292120:intron 30.0%
GAAATTAAGAGAAAGAAGGA+AGG - chr2_3:40910158-40910177 None:intergenic 30.0%
GCATGAAATTAAGAGAAAGA+AGG - chr2_3:40910162-40910181 None:intergenic 30.0%
TCAATGCAAATCCAATCAAA+TGG - chr2_3:40910750-40910769 None:intergenic 30.0%
ATGAAATAAAGTAGGTTGTC+AGG - chr2_3:40910815-40910834 None:intergenic 30.0%
! AACCTACTTTATTTCATGCA+GGG + chr2_3:40910818-40910837 Msa0292120:intron 30.0%
!!! TTCTTTTGAGGCAATTTGAA+TGG - chr2_3:40911058-40911077 None:intergenic 30.0%
TTCAAATTGCCTCAAAAGAA+AGG + chr2_3:40911058-40911077 Msa0292120:CDS 30.0%
TCAAATTGCCTCAAAAGAAA+GGG + chr2_3:40911059-40911078 Msa0292120:CDS 30.0%
AAAAGAAAGGGAAAAAGCAA+TGG + chr2_3:40911071-40911090 Msa0292120:CDS 30.0%
TTTGTTTAAGAAACCCGAAA+TGG + chr2_3:40911179-40911198 Msa0292120:three_prime_UTR 30.0%
TTGATCTCAGTAATCCATTT+CGG - chr2_3:40911196-40911215 None:intergenic 30.0%
TTACTGAGATCAAAACTAGA+AGG + chr2_3:40911203-40911222 Msa0292120:three_prime_UTR 30.0%
! TATCAAAAGTGCAAAAACCT+AGG + chr2_3:40911345-40911364 Msa0292120:three_prime_UTR 30.0%
GTTACTCACATTGATCATTA+AGG + chr2_3:40911377-40911396 Msa0292120:three_prime_UTR 30.0%
!!! TTAGAAAGTGCTCTTTTCAA+TGG + chr2_3:40911472-40911491 Msa0292120:three_prime_UTR 30.0%
! TGGTTACTAAGGATTTCTTT+TGG + chr2_3:40911492-40911511 Msa0292120:three_prime_UTR 30.0%
! TTTTGTAAAGAGAGGAGTGA+GGG - chr2_3:40905302-40905321 None:intergenic 35.0%
CAATGAAGAATGAGGAAAAG+GGG - chr2_3:40905459-40905478 None:intergenic 35.0%
! CCCTCTTTCAATCAGATTTT+AGG + chr2_3:40905523-40905542 Msa0292120:five_prime_UTR 35.0%
CCCTAAAATCTGATTGAAAG+AGG - chr2_3:40905527-40905546 None:intergenic 35.0%
TTAAACTGGTAAAAGGGTCA+AGG + chr2_3:40905622-40905641 Msa0292120:five_prime_UTR 35.0%
! TGTGTTTTGTGAAAAAGGGA+TGG + chr2_3:40905704-40905723 Msa0292120:five_prime_UTR 35.0%
!! GAGAGTATTTAGTGGTATCA+TGG + chr2_3:40905828-40905847 Msa0292120:five_prime_UTR 35.0%
AAAGAGAGAAAGAGGCAAAA+TGG - chr2_3:40905878-40905897 None:intergenic 35.0%
!!! TTGCCTCTTTCTCTCTTTTT+TGG + chr2_3:40905880-40905899 Msa0292120:five_prime_UTR 35.0%
CAAAAGGGTCATTGGATTTA+TGG + chr2_3:40906048-40906067 Msa0292120:five_prime_UTR 35.0%
ACTTCCATCAAGTTTGTAAG+TGG + chr2_3:40906132-40906151 Msa0292120:five_prime_UTR 35.0%
GATTCCACTTACAAACTTGA+TGG - chr2_3:40906139-40906158 None:intergenic 35.0%
TTTGTAAGTGGAATCTGTAG+AGG + chr2_3:40906144-40906163 Msa0292120:five_prime_UTR 35.0%
TAGGGTTGTTCAATCAAGTT+TGG + chr2_3:40906185-40906204 Msa0292120:CDS 35.0%
AGGGTTGTTCAATCAAGTTT+GGG + chr2_3:40906186-40906205 Msa0292120:CDS 35.0%
TGATGCTCTTGCTTATAATG+TGG + chr2_3:40906416-40906435 Msa0292120:CDS 35.0%
TGTGAGAAGCAATGTATTCT+TGG - chr2_3:40907107-40907126 None:intergenic 35.0%
AATACTTGGGTTATACTCCT+GGG + chr2_3:40907168-40907187 Msa0292120:CDS 35.0%
TGGCATACATCCACAAAATA+AGG - chr2_3:40907220-40907239 None:intergenic 35.0%
TAATCCTGTGATCAGAAAGT+TGG - chr2_3:40907240-40907259 None:intergenic 35.0%
ACAGGATTACTACTCATAGT+TGG + chr2_3:40907251-40907270 Msa0292120:CDS 35.0%
TAGTGACCATAAAAGAAGAG+AGG + chr2_3:40907322-40907341 Msa0292120:CDS 35.0%
! GCATATCCTCTCTTCTTTTA+TGG - chr2_3:40907331-40907350 None:intergenic 35.0%
ACTCCACTATCAAAATTGTG+AGG + chr2_3:40907382-40907401 Msa0292120:intron 35.0%
ATCTCATAGGTAATCCAACA+CGG - chr2_3:40907449-40907468 None:intergenic 35.0%
TGTTGGATTACCTATGAGAT+CGG + chr2_3:40907449-40907468 Msa0292120:intron 35.0%
AAATCCTACCTAGGATAATG+AGG - chr2_3:40908027-40908046 None:intergenic 35.0%
CAACGACCAATATAATGAAG+TGG - chr2_3:40908154-40908173 None:intergenic 35.0%
AAATAGAAGCTAAGCCTCTT+TGG - chr2_3:40908207-40908226 None:intergenic 35.0%
! GGGATTTTGTCTTGAGTATA+TGG + chr2_3:40908386-40908405 Msa0292120:intron 35.0%
! AGTACACAAGAAAGGCATAT+GGG - chr2_3:40908418-40908437 None:intergenic 35.0%
! TAGTACACAAGAAAGGCATA+TGG - chr2_3:40908419-40908438 None:intergenic 35.0%
! AAGAGTGTAGTACACAAGAA+AGG - chr2_3:40908426-40908445 None:intergenic 35.0%
AGAAGTGAGAACACTGTAAT+GGG - chr2_3:40908490-40908509 None:intergenic 35.0%
GACAGAATACATAGCATATG+CGG - chr2_3:40908623-40908642 None:intergenic 35.0%
GTATTCTGTCCAAGTAAAAG+TGG + chr2_3:40908633-40908652 Msa0292120:CDS 35.0%
AATTCTCAGATTCAACTGGT+GGG - chr2_3:40908828-40908847 None:intergenic 35.0%
AAATTCTCAGATTCAACTGG+TGG - chr2_3:40908829-40908848 None:intergenic 35.0%
TGCAAATTCTCAGATTCAAC+TGG - chr2_3:40908832-40908851 None:intergenic 35.0%
! TGTCTGCTCTTTTACAACTT+TGG - chr2_3:40908929-40908948 None:intergenic 35.0%
CTTAATCATTATGATGCCCT+TGG + chr2_3:40908985-40909004 Msa0292120:CDS 35.0%
GAAAAAGGAATACCGGAAAA+AGG + chr2_3:40909044-40909063 Msa0292120:CDS 35.0%
ATATTTAGCGCAACATTGCA+AGG - chr2_3:40909160-40909179 None:intergenic 35.0%
CGTGCATCCTGATAAAAATA+TGG + chr2_3:40909461-40909480 Msa0292120:CDS 35.0%
!! GAACTGCCCATATTTTTATC+AGG - chr2_3:40909471-40909490 None:intergenic 35.0%
GAAACTTCAATGTGCATATG+AGG + chr2_3:40909512-40909531 Msa0292120:CDS 35.0%
! CACTGTTTTCCTCTTTAACA+AGG + chr2_3:40909644-40909663 Msa0292120:intron 35.0%
TTAACAAGGATGAAACTTCC+AGG + chr2_3:40909658-40909677 Msa0292120:intron 35.0%
CTTATGATTCTTCAAACTCG+TGG - chr2_3:40909836-40909855 None:intergenic 35.0%
TGCATTGTAATGAACGGATA+TGG - chr2_3:40909923-40909942 None:intergenic 35.0%
TCCTGAATTTACATCTTCTC+TGG + chr2_3:40910196-40910215 Msa0292120:intron 35.0%
TCCAGAGAAGATGTAAATTC+AGG - chr2_3:40910200-40910219 None:intergenic 35.0%
!! AGATGGATGGGTTGAATATA+AGG + chr2_3:40910257-40910276 Msa0292120:CDS 35.0%
!! GATGGATGGGTTGAATATAA+GGG + chr2_3:40910258-40910277 Msa0292120:CDS 35.0%
GGTTGAATATAAGGGATCTT+TGG + chr2_3:40910266-40910285 Msa0292120:CDS 35.0%
GCTTTGATCTTGTCTTTCAT+AGG + chr2_3:40910368-40910387 Msa0292120:intron 35.0%
TGATCAGTGTTGTCAAATAG+CGG + chr2_3:40910513-40910532 Msa0292120:intron 35.0%
! CAACCTACTTTATTTCATGC+AGG + chr2_3:40910817-40910836 Msa0292120:intron 35.0%
TTCCCTGCATGAAATAAAGT+AGG - chr2_3:40910823-40910842 None:intergenic 35.0%
! ACTTTATTTCATGCAGGGAA+TGG + chr2_3:40910823-40910842 Msa0292120:intron 35.0%
ATCTACTTGAGTTACAGGAA+TGG - chr2_3:40910910-40910929 None:intergenic 35.0%
TAACTCAAGTAGATTCCCAT+GGG + chr2_3:40910916-40910935 Msa0292120:CDS 35.0%
GTCTTCATCCATCATCATTT+CGG - chr2_3:40910951-40910970 None:intergenic 35.0%
!!! TGCTTTTTCCCTTTCTTTTG+AGG - chr2_3:40911070-40911089 None:intergenic 35.0%
TCTTGCTGAAAAGCTCAATA+GGG + chr2_3:40911103-40911122 Msa0292120:exon 35.0%
TGATCTCAGTAATCCATTTC+GGG - chr2_3:40911195-40911214 None:intergenic 35.0%
GTAAAGAAAATTGGCAACCT+TGG - chr2_3:40911289-40911308 None:intergenic 35.0%
GTGCAAAAACCTAGGTTTAT+AGG + chr2_3:40911353-40911372 Msa0292120:three_prime_UTR 35.0%
TGAGTAACTCCTATAAACCT+AGG - chr2_3:40911365-40911384 None:intergenic 35.0%
! GCTCTTTTCAATGGTTACTA+AGG + chr2_3:40911481-40911500 Msa0292120:three_prime_UTR 35.0%
! GTTTTGTAAAGAGAGGAGTG+AGG - chr2_3:40905303-40905322 None:intergenic 40.0%
GAGGAAAAGGGGTTTCAAAA+GGG - chr2_3:40905448-40905467 None:intergenic 40.0%
TGAGGAAAAGGGGTTTCAAA+AGG - chr2_3:40905449-40905468 None:intergenic 40.0%
! TGGAGCATCAATGAAGAATG+AGG - chr2_3:40905467-40905486 None:intergenic 40.0%
TAGGGTCGTTGAAAAAGTAG+AGG + chr2_3:40905667-40905686 Msa0292120:five_prime_UTR 40.0%
TAGCATCACAAAAGGGTCAT+TGG + chr2_3:40906040-40906059 Msa0292120:five_prime_UTR 40.0%
GGTCATTGGATTTATGGTGA+TGG + chr2_3:40906054-40906073 Msa0292120:five_prime_UTR 40.0%
!! TCATGGTGATGGAGGATATA+GGG + chr2_3:40906167-40906186 Msa0292120:exon 40.0%
GGGTTGTTCAATCAAGTTTG+GGG + chr2_3:40906187-40906206 Msa0292120:CDS 40.0%
TGTTCAATCAAGTTTGGGGA+TGG + chr2_3:40906191-40906210 Msa0292120:CDS 40.0%
CGATGTTTATTGAACGGCAT+TGG + chr2_3:40906281-40906300 Msa0292120:CDS 40.0%
TCTGACTTCGATGTATTGCT+TGG + chr2_3:40906453-40906472 Msa0292120:CDS 40.0%
! GGTTTACGTGCTTGTTAGTA+TGG + chr2_3:40906474-40906493 Msa0292120:CDS 40.0%
!! TGAATGTTTCAGGTTACTGC+TGG + chr2_3:40907134-40907153 Msa0292120:intron 40.0%
!! GAATGTTTCAGGTTACTGCT+GGG + chr2_3:40907135-40907154 Msa0292120:intron 40.0%
!! AATGTTTCAGGTTACTGCTG+GGG + chr2_3:40907136-40907155 Msa0292120:intron 40.0%
! CAGGAGTATAACCCAAGTAT+TGG - chr2_3:40907169-40907188 None:intergenic 40.0%
CAATACTTGGGTTATACTCC+TGG + chr2_3:40907167-40907186 Msa0292120:CDS 40.0%
TATGCCAACTTTCTGATCAC+AGG + chr2_3:40907233-40907252 Msa0292120:CDS 40.0%
GGATTACTACTCATAGTTGG+AGG + chr2_3:40907254-40907273 Msa0292120:CDS 40.0%
!! GTGCCTCACAATTTTGATAG+TGG - chr2_3:40907388-40907407 None:intergenic 40.0%
AGGTAATCCAACACGGTTTA+GGG - chr2_3:40907442-40907461 None:intergenic 40.0%
TAGGTAATCCAACACGGTTT+AGG - chr2_3:40907443-40907462 None:intergenic 40.0%
GTTGGATTACCTATGAGATC+GGG + chr2_3:40907450-40907469 Msa0292120:intron 40.0%
AACTCAAAATGGTGCTCATC+AGG - chr2_3:40907730-40907749 None:intergenic 40.0%
!!! TGAGCACCATTTTGAGTTTG+TGG + chr2_3:40907732-40907751 Msa0292120:intron 40.0%
!!! GTGGATTTTAAGGCTCTAGA+TGG + chr2_3:40907751-40907770 Msa0292120:intron 40.0%
AGGAGGAAAGCTTGTAACTT+AGG - chr2_3:40908007-40908026 None:intergenic 40.0%
GAGAAGTGAGAACACTGTAA+TGG - chr2_3:40908491-40908510 None:intergenic 40.0%
TGTTTGTCAATCACGAATGC+AGG + chr2_3:40908550-40908569 Msa0292120:intron 40.0%
GAAATGCAAGGTTTATGGCA+AGG - chr2_3:40908675-40908694 None:intergenic 40.0%
CTGCTTATCAACAACTGATG+TGG - chr2_3:40908890-40908909 None:intergenic 40.0%
!!! CGATGCAGCAGTTTTGAAAA+AGG + chr2_3:40909029-40909048 Msa0292120:CDS 40.0%
!! CTGACTTAATGGGTGTTGTT+TGG + chr2_3:40909211-40909230 Msa0292120:intron 40.0%
GTTCTGTCTAAAAACTGCAG+AGG + chr2_3:40909539-40909558 Msa0292120:intron 40.0%
AGTGCGGTAATTCACATGTT+TGG + chr2_3:40910053-40910072 Msa0292120:CDS 40.0%
GTGCGGTAATTCACATGTTT+GGG + chr2_3:40910054-40910073 Msa0292120:CDS 40.0%
! TTTACATCTTCTCTGGAAGC+AGG + chr2_3:40910203-40910222 Msa0292120:intron 40.0%
CTGTCAGTTTCATCAAGCAA+AGG + chr2_3:40910230-40910249 Msa0292120:CDS 40.0%
CAGTTTCATCAAGCAAAGGA+TGG + chr2_3:40910234-40910253 Msa0292120:CDS 40.0%
!!! AGGGATCTTTGGTTTTTGAC+AGG + chr2_3:40910277-40910296 Msa0292120:CDS 40.0%
!! ATCAGAATGGGCTATATGTC+AGG + chr2_3:40910440-40910459 Msa0292120:CDS 40.0%
GCTATTTGACAACACTGATC+AGG - chr2_3:40910514-40910533 None:intergenic 40.0%
TAGCGGCTATATAAACGCTA+TGG + chr2_3:40910620-40910639 Msa0292120:intron 40.0%
TGTTGTCAATCTCAGATCGT+GGG - chr2_3:40910685-40910704 None:intergenic 40.0%
AGTAGACTGAGTACCAAATC+AGG - chr2_3:40910713-40910732 None:intergenic 40.0%
ATCAAATGGAACACTGTCTC+TGG - chr2_3:40910736-40910755 None:intergenic 40.0%
GAGACAGTGTTCCATTTGAT+TGG + chr2_3:40910736-40910755 Msa0292120:intron 40.0%
ACCATGTTTACATGGAAGCT+CGG - chr2_3:40910872-40910891 None:intergenic 40.0%
AGCTTCCATGTAAACATGGT+TGG + chr2_3:40910872-40910891 Msa0292120:CDS 40.0%
TGGGAATCTACTTGAGTTAC+AGG - chr2_3:40910915-40910934 None:intergenic 40.0%
GTAACTCAAGTAGATTCCCA+TGG + chr2_3:40910915-40910934 Msa0292120:CDS 40.0%
AAGTAGATTCCCATGGGATT+TGG + chr2_3:40910922-40910941 Msa0292120:CDS 40.0%
GTCTTGCTGAAAAGCTCAAT+AGG + chr2_3:40911102-40911121 Msa0292120:exon 40.0%
TTTCATTGCCTACATCCCAA+AGG + chr2_3:40911137-40911156 Msa0292120:three_prime_UTR 40.0%
TTCATTGCCTACATCCCAAA+GGG + chr2_3:40911138-40911157 Msa0292120:three_prime_UTR 40.0%
TTACTCCATCCAATCCCTTT+GGG - chr2_3:40911155-40911174 None:intergenic 40.0%
TTTACTCCATCCAATCCCTT+TGG - chr2_3:40911156-40911175 None:intergenic 40.0%
AAGGAATTGCTAGCAACACT+CGG + chr2_3:40911222-40911241 Msa0292120:three_prime_UTR 40.0%
GTGGTGAATTATAAGAGCCA+AGG + chr2_3:40911269-40911288 Msa0292120:three_prime_UTR 40.0%
TTTCAGAACTGAGCATGAGT+CGG + chr2_3:40911401-40911420 Msa0292120:three_prime_UTR 40.0%
AGTGGAATCTGTAGAGGTCA+TGG + chr2_3:40906150-40906169 Msa0292120:exon 45.0%
ATCTGTAGAGGTCATGGTGA+TGG + chr2_3:40906156-40906175 Msa0292120:exon 45.0%
!! GTCATGGTGATGGAGGATAT+AGG + chr2_3:40906166-40906185 Msa0292120:exon 45.0%
ATCAAGTTTGGGGATGGCTT+CGG + chr2_3:40906197-40906216 Msa0292120:CDS 45.0%
TTTGGAAGGACTCTGCTGTA+AGG + chr2_3:40906362-40906381 Msa0292120:CDS 45.0%
TTGGAAGGACTCTGCTGTAA+GGG + chr2_3:40906363-40906382 Msa0292120:CDS 45.0%
GACGCTGCCCTTCAAAATTT+AGG + chr2_3:40906805-40906824 Msa0292120:intron 45.0%
! ACTCCTGGGCTTTTTATCGT+AGG + chr2_3:40907182-40907201 Msa0292120:CDS 45.0%
! CTCCTGGGCTTTTTATCGTA+GGG + chr2_3:40907183-40907202 Msa0292120:CDS 45.0%
! TTTTTGCCCCTAAACCGTGT+TGG + chr2_3:40907432-40907451 Msa0292120:intron 45.0%
GGTAATCCAACACGGTTTAG+GGG - chr2_3:40907441-40907460 None:intergenic 45.0%
TGTTTAAGCTCAGCTTGCCA+AGG - chr2_3:40907537-40907556 None:intergenic 45.0%
CACGACGTGATGTAAGTGTA+TGG - chr2_3:40907613-40907632 None:intergenic 45.0%
TACACTTACATCACGTCGTG+TGG + chr2_3:40907613-40907632 Msa0292120:CDS 45.0%
TGACCTTCTTTCCCTTTGCT+TGG + chr2_3:40907691-40907710 Msa0292120:CDS 45.0%
GCTTTCCTCCTCATTATCCT+AGG + chr2_3:40908016-40908035 Msa0292120:CDS 45.0%
TCCTCCTCATTATCCTAGGT+AGG + chr2_3:40908020-40908039 Msa0292120:intron 45.0%
TCCTACCTAGGATAATGAGG+AGG - chr2_3:40908024-40908043 None:intergenic 45.0%
AAGCTAAGCCTCTTTGGTTG+GGG - chr2_3:40908201-40908220 None:intergenic 45.0%
GAAGCTAAGCCTCTTTGGTT+GGG - chr2_3:40908202-40908221 None:intergenic 45.0%
AGAAGCTAAGCCTCTTTGGT+TGG - chr2_3:40908203-40908222 None:intergenic 45.0%
! GCACGCTTGGTGGTATTAAT+TGG + chr2_3:40908595-40908614 Msa0292120:CDS 45.0%
CTGTCCAAGTAAAAGTGGGA+TGG + chr2_3:40908638-40908657 Msa0292120:CDS 45.0%
!! CAAGCCATCCCACTTTTACT+TGG - chr2_3:40908645-40908664 None:intergenic 45.0%
CAAGTAAAAGTGGGATGGCT+TGG + chr2_3:40908643-40908662 Msa0292120:CDS 45.0%
TCCTGAAGAGCAGAAGCAAT+CGG + chr2_3:40908756-40908775 Msa0292120:CDS 45.0%
GAAGCAATCGGAGACAGTTA+TGG + chr2_3:40908768-40908787 Msa0292120:CDS 45.0%
TCAGATTCAACTGGTGGGAT+AGG - chr2_3:40908823-40908842 None:intergenic 45.0%
TTTGTGGCGGCTAAATCCAA+GGG - chr2_3:40909004-40909023 None:intergenic 45.0%
! TTTTGTGGCGGCTAAATCCA+AGG - chr2_3:40909005-40909024 None:intergenic 45.0%
!! CTGCATCGATCTTTTTGTGG+CGG - chr2_3:40909017-40909036 None:intergenic 45.0%
!! CTGCTGCATCGATCTTTTTG+TGG - chr2_3:40909020-40909039 None:intergenic 45.0%
TTTAGCGCAACATTGCAAGG+TGG - chr2_3:40909157-40909176 None:intergenic 45.0%
TCACAGAGTCAGAAAGAACC+TGG - chr2_3:40909679-40909698 None:intergenic 45.0%
TACCTGATGTGAACTGCTGT+GGG - chr2_3:40909768-40909787 None:intergenic 45.0%
TTACCTGATGTGAACTGCTG+TGG - chr2_3:40909769-40909788 None:intergenic 45.0%
ATCGTTCCGAAGAATCCAGA+CGG + chr2_3:40910017-40910036 Msa0292120:CDS 45.0%
CTGTATCCGTCTGGATTCTT+CGG - chr2_3:40910026-40910045 None:intergenic 45.0%
ATGTTTGGGTATGCACCAAC+AGG + chr2_3:40910068-40910087 Msa0292120:CDS 45.0%
CATCAAGCAAAGGATGGAGA+TGG + chr2_3:40910240-40910259 Msa0292120:CDS 45.0%
AAGCAAAGGATGGAGATGGA+TGG + chr2_3:40910244-40910263 Msa0292120:CDS 45.0%
AGCAAAGGATGGAGATGGAT+GGG + chr2_3:40910245-40910264 Msa0292120:CDS 45.0%
ATAGCAGTGCTACAACGTAG+CGG + chr2_3:40910538-40910557 Msa0292120:intron 45.0%
TCTCAGATCGTGGGAAATAG+CGG - chr2_3:40910676-40910695 None:intergenic 45.0%
GTGTTGTCAATCTCAGATCG+TGG - chr2_3:40910686-40910705 None:intergenic 45.0%
! CGATCTGAGATTGACAACAC+TGG + chr2_3:40910686-40910705 Msa0292120:intron 45.0%
TGACAACACTGGACCTGATT+TGG + chr2_3:40910697-40910716 Msa0292120:intron 45.0%
AGGTTGTCAGGTACAGAAAG+TGG - chr2_3:40910803-40910822 None:intergenic 45.0%
TGTTTACATGGAAGCTCGGT+CGG - chr2_3:40910868-40910887 None:intergenic 45.0%
ACCGAGCTTCCATGTAAACA+TGG + chr2_3:40910868-40910887 Msa0292120:CDS 45.0%
CCAAGCCAACCATGTTTACA+TGG - chr2_3:40910880-40910899 None:intergenic 45.0%
! CCATGTAAACATGGTTGGCT+TGG + chr2_3:40910877-40910896 Msa0292120:CDS 45.0%
TTTGGACGCCGAAATGATGA+TGG + chr2_3:40910940-40910959 Msa0292120:CDS 45.0%
!! GATGATGGATGAAGACGAAG+AGG + chr2_3:40910955-40910974 Msa0292120:CDS 45.0%
ATTTGACCTGTGGCTTCAAC+AGG + chr2_3:40910979-40910998 Msa0292120:CDS 45.0%
! CTTCAACAGGCTTTAGCATC+TGG + chr2_3:40910992-40911011 Msa0292120:CDS 45.0%
!! ATCCAATCCCTTTGGGATGT+AGG - chr2_3:40911148-40911167 None:intergenic 45.0%
TACATCCCAAAGGGATTGGA+TGG + chr2_3:40911147-40911166 Msa0292120:three_prime_UTR 45.0%
!! GATGAGTCATGAGAGCATTG+TGG + chr2_3:40911250-40911269 Msa0292120:three_prime_UTR 45.0%
!! TGTAGAGGTCATGGTGATGG+AGG + chr2_3:40906159-40906178 Msa0292120:exon 50.0%
GGTCACGAAAAGATGCCTGT+TGG + chr2_3:40906218-40906237 Msa0292120:CDS 50.0%
!! TATTGAACGGCATTGGCCGA+TGG + chr2_3:40906288-40906307 Msa0292120:CDS 50.0%
ATGCAGGGGTTGCTCGAAAT+TGG + chr2_3:40906312-40906331 Msa0292120:CDS 50.0%
TGCAGGGGTTGCTCGAAATT+GGG + chr2_3:40906313-40906332 Msa0292120:CDS 50.0%
TGGAAGGACTCTGCTGTAAG+GGG + chr2_3:40906364-40906383 Msa0292120:CDS 50.0%
TGGGGTTGCTGTCCAATACT+TGG + chr2_3:40907154-40907173 Msa0292120:CDS 50.0%
GGGGTTGCTGTCCAATACTT+GGG + chr2_3:40907155-40907174 Msa0292120:CDS 50.0%
AGCCCTACGATAAAAAGCCC+AGG - chr2_3:40907188-40907207 None:intergenic 50.0%
CTATGAGATCGGGAGCTGTT+GGG + chr2_3:40907460-40907479 Msa0292120:intron 50.0%
TCCAGGATCATTCGATGCGA+TGG - chr2_3:40907510-40907529 None:intergenic 50.0%
TTCTTCATCGTCACACCTCG+TGG + chr2_3:40907639-40907658 Msa0292120:CDS 50.0%
CAAAGGGAAAGAAGGTCACG+CGG - chr2_3:40907689-40907708 None:intergenic 50.0%
GCACCAAGCAAAGGGAAAGA+AGG - chr2_3:40907697-40907716 None:intergenic 50.0%
ATACGACGGCACCAAGCAAA+GGG - chr2_3:40907705-40907724 None:intergenic 50.0%
GTGCTCATCAGGTGATACGA+CGG - chr2_3:40907719-40907738 None:intergenic 50.0%
TCCTACTCGAGACTGTAGCA+CGG - chr2_3:40908073-40908092 None:intergenic 50.0%
CTATTTCCCCCCAACCAAAG+AGG + chr2_3:40908190-40908209 Msa0292120:intron 50.0%
AGCTAAGCCTCTTTGGTTGG+GGG - chr2_3:40908200-40908219 None:intergenic 50.0%
CACCAAGCGTGCACGATTTA+GGG - chr2_3:40908587-40908606 None:intergenic 50.0%
TCCGATTGCTTCTGCTCTTC+AGG - chr2_3:40908760-40908779 None:intergenic 50.0%
ACAACTGATGTGGTGACAGC+AGG - chr2_3:40908880-40908899 None:intergenic 50.0%
GTGAACTGCTGTGGGATTTC+TGG - chr2_3:40909760-40909779 None:intergenic 50.0%
ATCCCACAGCAGTTCACATC+AGG + chr2_3:40909763-40909782 Msa0292120:CDS 50.0%
CTTTGTGCACTGTATCCGTC+TGG - chr2_3:40910035-40910054 None:intergenic 50.0%
CGGATACAGTGCACAAAGTG+CGG + chr2_3:40910037-40910056 Msa0292120:CDS 50.0%
GACCTGACACCATCTTGCTT+TGG - chr2_3:40910101-40910120 None:intergenic 50.0%
! CCGCACAAACAAAAGCACGT+GGG - chr2_3:40910401-40910420 None:intergenic 50.0%
!! CCCACGTGCTTTTGTTTGTG+CGG + chr2_3:40910398-40910417 Msa0292120:CDS 50.0%
! TCCGCACAAACAAAAGCACG+TGG - chr2_3:40910402-40910421 None:intergenic 50.0%
! TCATGCAGGGAATGGCTTGT+AGG + chr2_3:40910831-40910850 Msa0292120:intron 50.0%
TTTCGGCGTCCAAATCCCAT+GGG - chr2_3:40910934-40910953 None:intergenic 50.0%
ATTTCGGCGTCCAAATCCCA+TGG - chr2_3:40910935-40910954 None:intergenic 50.0%
!! ACGAAGAGGCATTTGACCTG+TGG + chr2_3:40910969-40910988 Msa0292120:CDS 50.0%
CTAAAGCCTGTTGAAGCCAC+AGG - chr2_3:40910988-40911007 None:intergenic 50.0%
TTTGCGAGTCCTCAAAACGC+AGG + chr2_3:40911020-40911039 Msa0292120:CDS 50.0%
! CCAACTCTTCCTGCGTTTTG+AGG - chr2_3:40911032-40911051 None:intergenic 50.0%
CCTCAAAACGCAGGAAGAGT+TGG + chr2_3:40911029-40911048 Msa0292120:CDS 50.0%
TGCCTACATCCCAAAGGGAT+TGG + chr2_3:40911143-40911162 Msa0292120:three_prime_UTR 50.0%
! GCATTGGCCGATGGTATGCA+GGG + chr2_3:40906297-40906316 Msa0292120:CDS 55.0%
CATTGGCCGATGGTATGCAG+GGG + chr2_3:40906298-40906317 Msa0292120:CDS 55.0%
GAGCAACCCCTGCATACCAT+CGG - chr2_3:40906307-40906326 None:intergenic 55.0%
GCAGGGGTTGCTCGAAATTG+GGG + chr2_3:40906314-40906333 Msa0292120:CDS 55.0%
GGAAGGACTCTGCTGTAAGG+GGG + chr2_3:40906365-40906384 Msa0292120:CDS 55.0%
CCAACAGCTCCCGATCTCAT+AGG - chr2_3:40907462-40907481 None:intergenic 55.0%
CCTATGAGATCGGGAGCTGT+TGG + chr2_3:40907459-40907478 Msa0292120:intron 55.0%
GCCATCGCATCGAATGATCC+TGG + chr2_3:40907506-40907525 Msa0292120:intron 55.0%
GAATGATCCTGGACGAGCCT+TGG + chr2_3:40907517-40907536 Msa0292120:intron 55.0%
! AAACACCCCCCTTTTCCCTG+TGG + chr2_3:40907552-40907571 Msa0292120:intron 55.0%
GATACGACGGCACCAAGCAA+AGG - chr2_3:40907706-40907725 None:intergenic 55.0%
TCCGTGCTACAGTCTCGAGT+AGG + chr2_3:40908069-40908088 Msa0292120:intron 55.0%
GCTAAGCCTCTTTGGTTGGG+GGG - chr2_3:40908199-40908218 None:intergenic 55.0%
CTCCCTAAATCGTGCACGCT+TGG + chr2_3:40908582-40908601 Msa0292120:CDS 55.0%
CCACCAAGCGTGCACGATTT+AGG - chr2_3:40908588-40908607 None:intergenic 55.0%
CCTAAATCGTGCACGCTTGG+TGG + chr2_3:40908585-40908604 Msa0292120:CDS 55.0%
GGTGACAGCAGGTGGTTTAC+TGG - chr2_3:40908869-40908888 None:intergenic 55.0%
ACTGATGTGGTGACAGCAGG+TGG - chr2_3:40908877-40908896 None:intergenic 55.0%
! CTGGCACACGCTTTTAGCCA+TGG - chr2_3:40909741-40909760 None:intergenic 55.0%
GGTATGCACCAACAGGAGCA+AGG + chr2_3:40910075-40910094 Msa0292120:CDS 55.0%
!! TGCTTTGGCCTTGCTCCTGT+TGG - chr2_3:40910086-40910105 None:intergenic 55.0%
GGAGCAAGGCCAAAGCAAGA+TGG + chr2_3:40910089-40910108 Msa0292120:CDS 55.0%
GGCCAAAGCAAGATGGTGTC+AGG + chr2_3:40910096-40910115 Msa0292120:CDS 55.0%
!! TATGGTGCTGTAGCGCGTAG+TGG + chr2_3:40910638-40910657 Msa0292120:intron 55.0%
TACATGGAAGCTCGGTCGGT+GGG - chr2_3:40910864-40910883 None:intergenic 55.0%
TTACATGGAAGCTCGGTCGG+TGG - chr2_3:40910865-40910884 None:intergenic 55.0%
CACAGTTCGAGCACGCCAAC+AGG - chr2_3:40906236-40906255 None:intergenic 60.0%
CTGTTGGCGTGCTCGAACTG+TGG + chr2_3:40906234-40906253 Msa0292120:CDS 60.0%
!! GGCATTGGCCGATGGTATGC+AGG + chr2_3:40906296-40906315 Msa0292120:CDS 60.0%
!! TGGGGGTGCCACAGGGAAAA+GGG - chr2_3:40907563-40907582 None:intergenic 60.0%
AGAGTCTGCGCACAGAGGCA+GGG - chr2_3:40907589-40907608 None:intergenic 60.0%
ATGGCAGAGTCTGCGCACAG+AGG - chr2_3:40907594-40907613 None:intergenic 60.0%
AAGCTCGGTCGGTGGGTGTT+AGG - chr2_3:40910857-40910876 None:intergenic 60.0%
CAGCTTGCCAAGGCTCGTCC+AGG - chr2_3:40907527-40907546 None:intergenic 65.0%
! GGGTGCCACAGGGAAAAGGG+GGG - chr2_3:40907560-40907579 None:intergenic 65.0%
! GGGGTGCCACAGGGAAAAGG+GGG - chr2_3:40907561-40907580 None:intergenic 65.0%
!! GGGGGTGCCACAGGGAAAAG+GGG - chr2_3:40907562-40907581 None:intergenic 65.0%
!! CTGGGGGTGCCACAGGGAAA+AGG - chr2_3:40907564-40907583 None:intergenic 65.0%
! CTTTTCCCTGTGGCACCCCC+AGG + chr2_3:40907562-40907581 Msa0292120:intron 65.0%
GAGTCTGCGCACAGAGGCAG+GGG - chr2_3:40907588-40907607 None:intergenic 65.0%
CAGAGTCTGCGCACAGAGGC+AGG - chr2_3:40907590-40907609 None:intergenic 65.0%
CACCTCGTGGCCAATCCCTC+CGG + chr2_3:40907652-40907671 Msa0292120:CDS 65.0%
CTAGAGTCCGCCGGAGGGAT+TGG - chr2_3:40907665-40907684 None:intergenic 65.0%
! CAATCCCTCCGGCGGACTCT+AGG + chr2_3:40907663-40907682 Msa0292120:CDS 65.0%
CTCGTGGCCAATCCCTCCGG+CGG + chr2_3:40907655-40907674 Msa0292120:CDS 70.0%
TCACGCGGCCTAGAGTCCGC+CGG - chr2_3:40907674-40907693 None:intergenic 70.0%
!! AGGGGCCTGGGGGTGCCACA+GGG - chr2_3:40907570-40907589 None:intergenic 75.0%
GCACAGAGGCAGGGGCCTGG+GGG - chr2_3:40907580-40907599 None:intergenic 75.0%
CGCACAGAGGCAGGGGCCTG+GGG - chr2_3:40907581-40907600 None:intergenic 75.0%
GCGCACAGAGGCAGGGGCCT+GGG - chr2_3:40907582-40907601 None:intergenic 75.0%
TGCGCACAGAGGCAGGGGCC+TGG - chr2_3:40907583-40907602 None:intergenic 75.0%
!! CGCCGGAGGGATTGGCCACG+AGG - chr2_3:40907657-40907676 None:intergenic 75.0%
GCGGCCTAGAGTCCGCCGGA+GGG - chr2_3:40907670-40907689 None:intergenic 75.0%
!!! CAGGGGCCTGGGGGTGCCAC+AGG - chr2_3:40907571-40907590 None:intergenic 80.0%
! CGCGGCCTAGAGTCCGCCGG+AGG - chr2_3:40907671-40907690 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 40905280 40911594 40905280 ID=Msa0292120;Name=Msa0292120
chr2_3 mRNA 40905280 40911594 40905280 ID=Msa0292120-mRNA-1;Parent=Msa0292120;Name=Msa0292120-mRNA-1;_AED=0.13;_eAED=0.13;_QI=889|0.7|0.72|0.81|1|1|11|483|662
chr2_3 exon 40905280 40906495 40905280 ID=Msa0292120-mRNA-1:exon:13217;Parent=Msa0292120-mRNA-1
chr2_3 exon 40907146 40907355 40907146 ID=Msa0292120-mRNA-1:exon:13218;Parent=Msa0292120-mRNA-1
chr2_3 exon 40907584 40907712 40907584 ID=Msa0292120-mRNA-1:exon:13219;Parent=Msa0292120-mRNA-1
chr2_3 exon 40907938 40908037 40907938 ID=Msa0292120-mRNA-1:exon:13220;Parent=Msa0292120-mRNA-1
chr2_3 exon 40908572 40909065 40908572 ID=Msa0292120-mRNA-1:exon:13221;Parent=Msa0292120-mRNA-1
chr2_3 exon 40909453 40909533 40909453 ID=Msa0292120-mRNA-1:exon:13222;Parent=Msa0292120-mRNA-1
chr2_3 exon 40909680 40909784 40909680 ID=Msa0292120-mRNA-1:exon:13223;Parent=Msa0292120-mRNA-1
chr2_3 exon 40910004 40910117 40910004 ID=Msa0292120-mRNA-1:exon:13224;Parent=Msa0292120-mRNA-1
chr2_3 exon 40910225 40910308 40910225 ID=Msa0292120-mRNA-1:exon:13225;Parent=Msa0292120-mRNA-1
chr2_3 exon 40910390 40910461 40910390 ID=Msa0292120-mRNA-1:exon:13226;Parent=Msa0292120-mRNA-1
chr2_3 exon 40910839 40911594 40910839 ID=Msa0292120-mRNA-1:exon:13227;Parent=Msa0292120-mRNA-1
chr2_3 five_prime_UTR 40905280 40906168 40905280 ID=Msa0292120-mRNA-1:five_prime_utr;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40906169 40906495 40906169 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40907146 40907355 40907146 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40907584 40907712 40907584 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40907938 40908037 40907938 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40908572 40909065 40908572 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40909453 40909533 40909453 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40909680 40909784 40909680 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40910004 40910117 40910004 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40910225 40910308 40910225 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40910390 40910461 40910390 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 CDS 40910839 40911111 40910839 ID=Msa0292120-mRNA-1:cds;Parent=Msa0292120-mRNA-1
chr2_3 three_prime_UTR 40911112 40911594 40911112 ID=Msa0292120-mRNA-1:three_prime_utr;Parent=Msa0292120-mRNA-1
Gene Sequence

>Msa0292120

ATGGTGATGGAGGATATAGGGTTGTTCAATCAAGTTTGGGGATGGCTTCGGTCACGAAAAGATGCCTGTTGGCGTGCTCGAACTGTGGTGTTTTGTTGTAGAGACAAAACTGCGATGTTTATTGAACGGCATTGGCCGATGGTATGCAGGGGTTGCTCGAAATTGGGGAGCTTACTTACATTATCTTTGATTTTTTGGAAGGACTCTGCTGTAAGGGGGTTTCAGTCTTTCATTAAGTTTGGTTCAGTGATGCTCTTGCTTATAATGTGGAGCTGCTTTCTTAGTCTGACTTCGATGTATTGCTTGGTTTACGTGCTTGTTAGTATGGTTACTGCTGGGGTTGCTGTCCAATACTTGGGTTATACTCCTGGGCTTTTTATCGTAGGGCTTTTTGCTATCCTTATTTTGTGGATGTATGCCAACTTTCTGATCACAGGATTACTACTCATAGTTGGAGGTATGATGCTTTTATTGTTGTTTGGGTTTCTAGACATGTTCTCTTTTAGTGACCATAAAAGAAGAGAGGATATGCCTATTGCCCCTGCCTCTGTGCGCAGACTCTGCCATACACTTACATCACGTCGTGTGGCTTTTCTTCATCGTCACACCTCGTGGCCAATCCCTCCGGCGGACTCTAGGCCGCGTGACCTTCTTTCCCTTTGCTTGTTGTATCCAGTTCAGATTAGTTCTGATTTGTATTTTAAGCAGGATCATATGATCTGTGCTACAGTTCCTAAGTTACAAGCTTTCCTCCTCATTATCCTAGGTTGCTTGTTCTCCCTAAATCGTGCACGCTTGGTGGTATTAATTGGAACCGCATATGCTATGTATTCTGTCCAAGTAAAAGTGGGATGGCTTGGCGTTTTCCTTGCCATAAACCTTGCATTTCTTTCAAATGACATTTTGAATTTTCTGCTTCAATGGTTTGATAATGTGAGTGAAAGTTCGCATCCTGAAGAGCAGAAGCAATCGGAGACAGTTATGGAAGACGACTTCGCTGAAGAGTGTGAATATCCTATCCCACCAGTTGAATCTGAGAATTTGCATTCATGCAAATCATCCAGTAAACCACCTGCTGTCACCACATCAGTTGTTGATAAGCAGAAAGAAATTTTGGTTACCAAAGTTGTAAAAGAGCAGACAAATTCAATTGATGAAATGAGAAGGATATTGAAGAGTCTTAATCATTATGATGCCCTTGGATTTAGCCGCCACAAAAAGATCGATGCAGCAGTTTTGAAAAAGGAATACCGGAAAAAGGCTATGCTCGTGCATCCTGATAAAAATATGGGCAGTTCTATGTCAAGCGAGTCATTCAAGAAACTTCAATGTGCATATGAGGTTCTTTCTGACTCTGTGAAGAAGCGAGACTATGATGAACAATTAAGAAAAGAAGAATCCATGGCTAAAAGCGTGTGCCAGAAATCCCACAGCAGTTCACATCAGGATAATACTGAATATCGTTCCGAAGAATCCAGACGGATACAGTGCACAAAGTGCGGTAATTCACATGTTTGGGTATGCACCAACAGGAGCAAGGCCAAAGCAAGATGGTGTCAGGATTGCTGTCAGTTTCATCAAGCAAAGGATGGAGATGGATGGGTTGAATATAAGGGATCTTTGGTTTTTGACAGGACTCAAAAAGTCGAGATCCCACGTGCTTTTGTTTGTGCGGAGAGCAAAATATTTGATGTATCAGAATGGGCTATATGTCAGGGAATGGCTTGTAGGCCTAACACCCACCGACCGAGCTTCCATGTAAACATGGTTGGCTTGGAGAAAAGCCATTCCTGTAACTCAAGTAGATTCCCATGGGATTTGGACGCCGAAATGATGATGGATGAAGACGAAGAGGCATTTGACCTGTGGCTTCAACAGGCTTTAGCATCTGGTCTCTTTTGCGAGTCCTCAAAACGCAGGAAGAGTTGGAGTCCATTCAAATTGCCTCAAAAGAAAGGGAAAAAGCAATGGCGAAGAACGTCTTGCTGA
Protein sequence

>Msa0292120

MVMEDIGLFNQVWGWLRSRKDACWRARTVVFCCRDKTAMFIERHWPMVCRGCSKLGSLLTLSLIFWKDSAVRGFQSFIKFGSVMLLLIMWSCFLSLTSMYCLVYVLVSMVTAGVAVQYLGYTPGLFIVGLFAILILWMYANFLITGLLLIVGGMMLLLLFGFLDMFSFSDHKRREDMPIAPASVRRLCHTLTSRRVAFLHRHTSWPIPPADSRPRDLLSLCLLYPVQISSDLYFKQDHMICATVPKLQAFLLIILGCLFSLNRARLVVLIGTAYAMYSVQVKVGWLGVFLAINLAFLSNDILNFLLQWFDNVSESSHPEEQKQSETVMEDDFAEECEYPIPPVESENLHSCKSSSKPPAVTTSVVDKQKEILVTKVVKEQTNSIDEMRRILKSLNHYDALGFSRHKKIDAAVLKKEYRKKAMLVHPDKNMGSSMSSESFKKLQCAYEVLSDSVKKRDYDEQLRKEESMAKSVCQKSHSSSHQDNTEYRSEESRRIQCTKCGNSHVWVCTNRSKAKARWCQDCCQFHQAKDGDGWVEYKGSLVFDRTQKVEIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLEKSHSCNSSRFPWDLDAEMMMDEDEEAFDLWLQQALASGLFCESSKRRKSWSPFKLPQKKGKKQWRRTSC*