AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1406230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406230 MtrunA17_Chr2g0326841 99.043 209 2 0 1 209 1 209 7.83e-156 429
Msa1406230 MtrunA17_Chr7g0264181 87.317 205 26 0 3 207 4 208 1.62e-133 373
Msa1406230 MtrunA17_Chr1g0181131 85.990 207 29 0 1 207 1 207 2.34e-133 373
Msa1406230 MtrunA17_Chr4g0028871 89.899 198 20 0 12 209 12 209 1.00e-132 371
Msa1406230 MtrunA17_Chr3g0142491 76.329 207 49 0 1 207 3 209 1.25e-119 338
Msa1406230 MtrunA17_Chr1g0177391 76.410 195 46 0 10 204 6 200 3.25e-114 324
Msa1406230 MtrunA17_Chr1g0151201 69.000 200 60 1 11 208 7 206 4.14e-102 294
Msa1406230 MtrunA17_Chr1g0156401 66.964 112 16 1 40 130 1 112 7.38e-45 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1406230 AT2G28305.1 88.945 199 22 0 10 208 5 203 1.37e-132 371
Msa1406230 AT2G37210.1 85.644 202 29 0 7 208 8 209 1.59e-130 366
Msa1406230 AT3G53450.1 84.236 203 32 0 7 209 8 210 1.59e-127 358
Msa1406230 AT2G37210.2 76.106 226 30 1 7 208 8 233 1.39e-124 352
Msa1406230 AT2G28305.3 90.659 182 17 0 10 191 5 186 6.26e-122 343
Msa1406230 AT5G06300.1 79.000 200 42 0 5 204 1 200 7.27e-118 334
Msa1406230 AT5G03270.1 82.796 186 32 0 10 195 16 201 2.70e-113 322
Msa1406230 AT2G35990.1 71.144 201 58 0 5 205 1 201 1.46e-110 315
Msa1406230 AT5G03270.2 82.873 181 31 0 10 190 16 196 4.77e-109 311
Msa1406230 AT4G35190.1 69.458 203 62 0 5 207 1 203 2.47e-105 303
Msa1406230 AT5G11950.1 68.342 199 63 0 10 208 7 205 2.24e-101 292
Msa1406230 AT5G11950.2 68.342 199 63 0 10 208 7 205 2.24e-101 292
Msa1406230 AT5G11950.3 68.342 199 63 0 10 208 7 205 2.24e-101 292
Msa1406230 AT4G35190.2 70.103 194 56 1 5 198 1 192 1.16e-100 290
Msa1406230 AT2G28305.2 92.593 135 10 0 10 144 5 139 6.22e-89 258
Msa1406230 AT2G35990.3 71.812 149 42 0 57 205 1 149 5.61e-80 236
Msa1406230 AT2G35990.2 71.812 149 42 0 57 205 1 149 5.61e-80 236
Msa1406230 AT5G11950.4 68.421 152 48 0 57 208 1 152 3.92e-74 221
Msa1406230 AT5G26140.2 53.061 147 47 1 84 208 6 152 2.46e-45 148
Msa1406230 AT5G26140.1 51.880 133 42 1 98 208 1 133 6.09e-38 129
Msa1406230 AT5G26140.3 56.863 102 44 0 107 208 17 118 2.06e-34 119

Find 67 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATCTAGTTTA+TGG 0.105402 tig0023205:+56607 Msa1406230:CDS
CTCTCTTGGCATTAGTGTTT+TGG 0.116726 tig0023205:-56889 None:intergenic
TGTTTCTACTTTAATTACTA+TGG 0.284874 tig0023205:-56018 None:intergenic
GATGGTGGTCGACATGTAAT+TGG 0.286287 tig0023205:+56676 Msa1406230:CDS
AATGATGCTGACTCGTCTAT+AGG 0.325760 tig0023205:-56095 None:intergenic
GTTAATGTAAACTATCGATT+TGG 0.336123 tig0023205:+61794 Msa1406230:three_prime_UTR
CCAACCTGGTAAGGCTATAA+AGG 0.339119 tig0023205:-58012 None:intergenic
ACTACTATGCTGCAGCTTAC+TGG 0.348219 tig0023205:+57915 Msa1406230:intron
ATGATGCTGACTCGTCTATA+GGG 0.353587 tig0023205:-56094 None:intergenic
TATTGAACTTGGAAAAGAAT+TGG 0.373481 tig0023205:+56331 Msa1406230:CDS
AGGAGGCAGCATTGGTTTGA+TGG 0.380464 tig0023205:+56630 Msa1406230:CDS
TGGTAACAAAACTAGCTATA+AGG 0.381980 tig0023205:+56301 Msa1406230:CDS
CGGTTATATGGTATATATAA+AGG 0.383302 tig0023205:-56162 None:intergenic
CTGCATAACTTTACCTCTCT+TGG 0.385694 tig0023205:-56903 None:intergenic
GTGGTATAAGCGCGGTTATA+TGG 0.390897 tig0023205:-56174 None:intergenic
GGAGGCAGCATTGGTTTGAT+GGG 0.391809 tig0023205:+56631 Msa1406230:CDS
GCATCAAAGGAAAGCTGAAA+TGG 0.434148 tig0023205:+57974 Msa1406230:CDS
TATTTGCATGAAGGTGGGTA+TGG 0.435005 tig0023205:+60947 Msa1406230:intron
GAGTTGCCTCCAAGCTAAGC+TGG 0.437628 tig0023205:+61584 Msa1406230:CDS
TTTGTCGATGAAAGTCAAAA+AGG 0.444110 tig0023205:-61170 None:intergenic
AAATCTTTACCGGTTTATCA+TGG 0.448590 tig0023205:-61018 None:intergenic
GTGGGATTGCTGAATGTTGA+TGG 0.455471 tig0023205:+61136 Msa1406230:CDS
CCTTTGATATGAGTGGTTGA+TGG 0.456369 tig0023205:-56198 None:intergenic
AAGGATGCTGCTATTGAACT+TGG 0.459571 tig0023205:+56320 Msa1406230:CDS
TCTCTCACCTTTGATATGAG+TGG 0.472849 tig0023205:-56205 None:intergenic
GGTAGAAGATCACAATTTCA+TGG 0.474201 tig0023205:+61738 Msa1406230:three_prime_UTR
TTTGAATGAATGGTGAAAGA+GGG 0.481457 tig0023205:+55993 None:intergenic
TTGGTGCAGACACAATTATA+TGG 0.490804 tig0023205:-61228 None:intergenic
TTGTTTGTACCAACCTGGTA+AGG 0.495823 tig0023205:-58021 None:intergenic
GTTTATGGAGGAGGCAGCAT+TGG 0.498113 tig0023205:+56622 Msa1406230:CDS
CACAATTATATGGCGAGCTG+TGG 0.500721 tig0023205:-61218 None:intergenic
ACTTGGCATCCATGATAAAC+CGG 0.501203 tig0023205:+61009 Msa1406230:CDS
ATTTCCCAAGCTGTTTATGA+TGG 0.505165 tig0023205:+56658 Msa1406230:CDS
GATGCCTTTATAGCCTTACC+AGG 0.517415 tig0023205:+58008 Msa1406230:CDS
ACAATTATATGGCGAGCTGT+GGG 0.517777 tig0023205:-61217 None:intergenic
TCCCAAGCTGTTTATGATGG+TGG 0.519492 tig0023205:+56661 Msa1406230:CDS
ACCACCATCATAAACAGCTT+GGG 0.519561 tig0023205:-56662 None:intergenic
ATTGATCTAGTTTATGGAGG+AGG 0.523752 tig0023205:+56613 Msa1406230:CDS
GACAACTCAAGGAACTACTA+TGG 0.525382 tig0023205:+61717 Msa1406230:three_prime_UTR
AGGCAACTCTTTCATGCTGT+GGG 0.528340 tig0023205:-61570 None:intergenic
TCAAAGGTGAGAGAGAAGAA+TGG 0.531372 tig0023205:+56214 Msa1406230:exon
GTGATAACATGGGCTCAACT+TGG 0.532726 tig0023205:+60992 Msa1406230:CDS
CAGTAGCTGACATGCATCAA+AGG 0.536960 tig0023205:+57961 Msa1406230:CDS
GACCACCATCATAAACAGCT+TGG 0.537227 tig0023205:-56663 None:intergenic
GAGGCAGCATTGGTTTGATG+GGG 0.537940 tig0023205:+56632 Msa1406230:CDS
ATCGACAAAGCTGTGGAGGA+AGG 0.545903 tig0023205:+61184 Msa1406230:CDS
GAGGCAACTCTTTCATGCTG+TGG 0.549574 tig0023205:-61571 None:intergenic
ATTTGCATGAAGGTGGGTAT+GGG 0.550161 tig0023205:+60948 Msa1406230:intron
GACTTTCATCGACAAAGCTG+TGG 0.562460 tig0023205:+61177 Msa1406230:CDS
AGCTCCTTGAGGTGATAACA+TGG 0.564557 tig0023205:+60981 Msa1406230:CDS
CAGCTTACTGGTGAAACAGT+AGG 0.570843 tig0023205:+57927 Msa1406230:intron
ATGGTGGTCGACATGTAATT+GGG 0.573816 tig0023205:+56677 Msa1406230:CDS
GATATGAGTGGTTGATGGTG+TGG 0.576120 tig0023205:-56193 None:intergenic
AATATTGATCTAGTTTATGG+AGG 0.578824 tig0023205:+56610 Msa1406230:CDS
TTGAATGAATGGTGAAAGAG+GGG 0.580105 tig0023205:+55994 None:intergenic
AGTTGCCTCCAAGCTAAGCT+GGG 0.587565 tig0023205:+61585 Msa1406230:CDS
CCATCAACCACTCATATCAA+AGG 0.611945 tig0023205:+56198 Msa1406230:five_prime_UTR
GAGCCCATGTTATCACCTCA+AGG 0.614099 tig0023205:-60985 None:intergenic
TCAAAATGTGAGACAACTCA+AGG 0.622102 tig0023205:+61706 Msa1406230:three_prime_UTR
TTTCATCGACAAAGCTGTGG+AGG 0.624003 tig0023205:+61180 Msa1406230:CDS
CAAAACACTAATGCCAAGAG+AGG 0.626831 tig0023205:+56890 Msa1406230:CDS
GACACTTGAGGAGCTCCTTG+AGG 0.631827 tig0023205:+60970 Msa1406230:CDS
GACTCGTCTATAGGGAACCA+AGG 0.651655 tig0023205:-56086 None:intergenic
CAATTATATGGCGAGCTGTG+GGG 0.655172 tig0023205:-61216 None:intergenic
AGGTGGGTATGGGACACTTG+AGG 0.655697 tig0023205:+60958 Msa1406230:intron
GCTCCTTGAGGTGATAACAT+GGG 0.684486 tig0023205:+60982 Msa1406230:CDS
TTGATGGTGTGGTATAAGCG+CGG 0.761838 tig0023205:-56182 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACTTATATTTTGTTA+TGG - tig0023205:56480-56499 None:intergenic 10.0%
!!! TTGTATTTTGATATATAAAA+AGG + tig0023205:56579-56598 Msa1406230:intron 10.0%
!! ATGATAAAGAATATAAAAAA+GGG - tig0023205:57274-57293 None:intergenic 10.0%
!!! AAATTAAAGTTTACATTTTA+TGG - tig0023205:58266-58285 None:intergenic 10.0%
!! TTCATGATGATAATAAAATA+AGG - tig0023205:56391-56410 None:intergenic 15.0%
!! GATGATAAAGAATATAAAAA+AGG - tig0023205:57275-57294 None:intergenic 15.0%
!!! GTGTCATTTTAATTATTTTT+TGG - tig0023205:57530-57549 None:intergenic 15.0%
!! CTTCTAATATTTGATTAAAT+GGG + tig0023205:58290-58309 Msa1406230:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - tig0023205:58588-58607 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - tig0023205:58612-58631 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + tig0023205:58611-58630 Msa1406230:intron 15.0%
!! AAAATGAAAAGAGAAAAAAA+AGG - tig0023205:58885-58904 None:intergenic 15.0%
!!! TTTTTTTCTCTTTTCATTTT+AGG + tig0023205:58885-58904 Msa1406230:intron 15.0%
!! ATTTGTCATGTAATAATTAA+TGG - tig0023205:59694-59713 None:intergenic 15.0%
!! AAACATCAAAAATAAAGATT+AGG + tig0023205:59747-59766 Msa1406230:intron 15.0%
!!! AAAGATTATTGAATATTTTG+AGG + tig0023205:60258-60277 Msa1406230:intron 15.0%
!!! GATGATTGTATATTTTTTTA+AGG - tig0023205:60814-60833 None:intergenic 15.0%
!!! ATAAAAGTTTTTGTTTTTGA+AGG + tig0023205:61114-61133 Msa1406230:intron 15.0%
!!! TGTTTCTACTTTAATTACTA+TGG - tig0023205:56021-56040 None:intergenic 20.0%
!! ATATCATATCATAGGTATAT+AGG - tig0023205:56534-56553 None:intergenic 20.0%
!! TATATACCTATGATATGATA+TGG + tig0023205:56533-56552 Msa1406230:intron 20.0%
!!! AGAAATATTGATCTAGTTTA+TGG + tig0023205:56607-56626 Msa1406230:CDS 20.0%
!! AGTTTGTAAATTTGAACTAT+AGG - tig0023205:57144-57163 None:intergenic 20.0%
!! TATATTCTTTATCATCATTG+AGG + tig0023205:57279-57298 Msa1406230:intron 20.0%
!! TTAAATGATTAAACATTGCA+AGG + tig0023205:57426-57445 Msa1406230:intron 20.0%
!! ATTAAGCGTCATTTAAAAAT+TGG - tig0023205:57482-57501 None:intergenic 20.0%
!! TTGAATAAAATTATCCTTAG+TGG - tig0023205:57594-57613 None:intergenic 20.0%
!! AAATATCGACAGTTAATATA+TGG - tig0023205:57623-57642 None:intergenic 20.0%
!! CCATTTAATCAAATATTAGA+AGG - tig0023205:58292-58311 None:intergenic 20.0%
!! CCTTCTAATATTTGATTAAA+TGG + tig0023205:58289-58308 Msa1406230:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + tig0023205:58602-58621 Msa1406230:intron 20.0%
!! ATGATTAAAAAGAAAGAGAA+TGG - tig0023205:58645-58664 None:intergenic 20.0%
!! TTATGTGTAATTCATCTTAA+AGG - tig0023205:59044-59063 None:intergenic 20.0%
!! TTAAAAGTTGACAAATTCAA+TGG + tig0023205:59102-59121 Msa1406230:intron 20.0%
!!! TTGTTGGTTAAAATCTATAT+AGG + tig0023205:59227-59246 Msa1406230:intron 20.0%
!!! ATTTGTTTTAGGTTAAAAGA+TGG - tig0023205:59399-59418 None:intergenic 20.0%
!!! GGTTAAGTTTTATTTGTTTT+AGG - tig0023205:59410-59429 None:intergenic 20.0%
!!! AAAATATTTTCCCTGAAAAA+CGG + tig0023205:59560-59579 Msa1406230:intron 20.0%
!!! CTTATCACTTTTCAATTAAT+GGG - tig0023205:59778-59797 None:intergenic 20.0%
!!! TCTTATCACTTTTCAATTAA+TGG - tig0023205:59779-59798 None:intergenic 20.0%
!! TTAATTGAAAAGTGATAAGA+TGG + tig0023205:59779-59798 Msa1406230:intron 20.0%
!!! ATTATATTTCAAGTAACGTT+TGG - tig0023205:59997-60016 None:intergenic 20.0%
!! ATCAAAATACCTATTATTGA+AGG - tig0023205:60056-60075 None:intergenic 20.0%
!! ATTACGATAAAGTAAAACAA+AGG - tig0023205:60094-60113 None:intergenic 20.0%
!! AAAACCAAATCAATAATGTT+TGG - tig0023205:60305-60324 None:intergenic 20.0%
!!! GAAAAAATTGGTTTCAAAAT+GGG - tig0023205:60891-60910 None:intergenic 20.0%
!!! AGAAAAAATTGGTTTCAAAA+TGG - tig0023205:60892-60911 None:intergenic 20.0%
!! GTACTAGAAATAGAAAAAAT+TGG - tig0023205:60903-60922 None:intergenic 20.0%
!!! GCAAATTTTATCTCATAAAA+GGG - tig0023205:61090-61109 None:intergenic 20.0%
!!! AGCAAATTTTATCTCATAAA+AGG - tig0023205:61091-61110 None:intergenic 20.0%
!!! AGAATTAGTTTTCATTCTTT+TGG + tig0023205:61525-61544 Msa1406230:intron 20.0%
! CGGTTATATGGTATATATAA+AGG - tig0023205:56165-56184 None:intergenic 25.0%
! TATTGAACTTGGAAAAGAAT+TGG + tig0023205:56331-56350 Msa1406230:CDS 25.0%
! TCAAAAGAATTTGACGTATT+TGG + tig0023205:56504-56523 Msa1406230:intron 25.0%
! TAAACACCATATCATATCAT+AGG - tig0023205:56542-56561 None:intergenic 25.0%
!! AATATTGATCTAGTTTATGG+AGG + tig0023205:56610-56629 Msa1406230:CDS 25.0%
!! TCTTCTTCTTAAACCTATTT+TGG + tig0023205:56728-56747 Msa1406230:intron 25.0%
! ATATTGAGATAACAAAAGCA+TGG - tig0023205:57031-57050 None:intergenic 25.0%
! CCAAGCTTAAATTTATGATA+GGG - tig0023205:57350-57369 None:intergenic 25.0%
! ACAAATAAAAAAATGTGTCG+CGG - tig0023205:57699-57718 None:intergenic 25.0%
!! ATGTAATGATGAGTTTTTGA+AGG - tig0023205:57773-57792 None:intergenic 25.0%
! AGTGATATGAGTATTTAGTA+GGG - tig0023205:57830-57849 None:intergenic 25.0%
! CTATTGTTTCAGTGATAATT+TGG + tig0023205:57887-57906 Msa1406230:intron 25.0%
! ATGATTCACAAGTTTAATAG+TGG - tig0023205:58374-58393 None:intergenic 25.0%
!! AGTAGTGATTCACTAATTTT+TGG - tig0023205:58398-58417 None:intergenic 25.0%
!! TATGTGTTGGTATATTTAGA+TGG + tig0023205:58736-58755 Msa1406230:intron 25.0%
!!! TTGGAAAGCACTTAAATTTT+TGG + tig0023205:58994-59013 Msa1406230:intron 25.0%
!! TTTTAACCAACAAAAAGAGT+AGG - tig0023205:59220-59239 None:intergenic 25.0%
! ATGTGATTCCTATGTAAATT+TGG - tig0023205:59257-59276 None:intergenic 25.0%
!! GTAAGTTCAAAAATTCCTTT+TGG - tig0023205:59640-59659 None:intergenic 25.0%
!! TATAGTTGATACGATCAAAT+TGG + tig0023205:59892-59911 Msa1406230:intron 25.0%
! GAGAAATTCTAATATAGTCA+CGG + tig0023205:60162-60181 Msa1406230:intron 25.0%
! AGAAATTCTAATATAGTCAC+GGG + tig0023205:60163-60182 Msa1406230:intron 25.0%
!!! ATTTTTTTTTCCTGATGGTA+CGG - tig0023205:60644-60663 None:intergenic 25.0%
!!! AGACAATTTTTTTTTCCTGA+TGG - tig0023205:60649-60668 None:intergenic 25.0%
!! TTTCTTCTGAGTTTGAATTT+TGG - tig0023205:60748-60767 None:intergenic 25.0%
!!! ATTTTTTTAAGGACCAATGT+TGG - tig0023205:60803-60822 None:intergenic 25.0%
! ATACAATCATCTAACAAAAC+TGG + tig0023205:60823-60842 Msa1406230:intron 25.0%
! TACAATCATCTAACAAAACT+GGG + tig0023205:60824-60843 Msa1406230:intron 25.0%
!!! TAGTACCATGTTTTCTAAAA+GGG + tig0023205:60917-60936 Msa1406230:intron 25.0%
!!! TATAACCCTTTTAGAAAACA+TGG - tig0023205:60925-60944 None:intergenic 25.0%
! GGTTATATATATTTGCATGA+AGG + tig0023205:60938-60957 Msa1406230:intron 25.0%
! TATATATATTTGCATGAAGG+TGG + tig0023205:60941-60960 Msa1406230:intron 25.0%
! ATATATATTTGCATGAAGGT+GGG + tig0023205:60942-60961 Msa1406230:intron 25.0%
! TGTAGAATGAAAATCTTTAC+CGG - tig0023205:61031-61050 None:intergenic 25.0%
!!! AAAGTTTTTGTTTTTGAAGG+TGG + tig0023205:61117-61136 Msa1406230:intron 25.0%
!!! AAGTTTTTGTTTTTGAAGGT+GGG + tig0023205:61118-61137 Msa1406230:intron 25.0%
!!! ATATTTTTGACAAGCTCTTT+TGG - tig0023205:61256-61275 None:intergenic 25.0%
! AAAAGAGCTTGTCAAAAATA+TGG + tig0023205:61255-61274 Msa1406230:CDS 25.0%
!! TCTTAGATTTCACAATTTTG+AGG - tig0023205:61632-61651 None:intergenic 25.0%
!! TGAAATCTAAGATGATTAGA+TGG + tig0023205:61640-61659 Msa1406230:intron 25.0%
!! GTTAATGTAAACTATCGATT+TGG + tig0023205:61794-61813 Msa1406230:three_prime_UTR 25.0%
! ACATTGTATCAAGTTTTCCT+TGG + tig0023205:56069-56088 Msa1406230:five_prime_UTR 30.0%
!! TCAGCATCATTTTAATGATG+TGG + tig0023205:56107-56126 Msa1406230:five_prime_UTR 30.0%
! AAGAGAATTTGTGTGTTTTG+TGG + tig0023205:56269-56288 Msa1406230:CDS 30.0%
!!! TATAGCTAGTTTTGTTACCA+GGG - tig0023205:56301-56320 None:intergenic 30.0%
!!! TTATAGCTAGTTTTGTTACC+AGG - tig0023205:56302-56321 None:intergenic 30.0%
TGGTAACAAAACTAGCTATA+AGG + tig0023205:56301-56320 Msa1406230:CDS 30.0%
GGTTTCTGTAAATCCAAAAT+AGG - tig0023205:56744-56763 None:intergenic 30.0%
CGATAAATTTGACGATATCA+CGG - tig0023205:56789-56808 None:intergenic 30.0%
CTTATCTATCAATATACACC+TGG + tig0023205:57162-57181 Msa1406230:intron 30.0%
! AGAATCTAAAGGGTGTAATA+TGG - tig0023205:57239-57258 None:intergenic 30.0%
AATGCCAATGAGAATCTAAA+GGG - tig0023205:57249-57268 None:intergenic 30.0%
TAATGCCAATGAGAATCTAA+AGG - tig0023205:57250-57269 None:intergenic 30.0%
CCCTATCATAAATTTAAGCT+TGG + tig0023205:57347-57366 Msa1406230:intron 30.0%
GCCAAGCTTAAATTTATGAT+AGG - tig0023205:57351-57370 None:intergenic 30.0%
TTAAATGACGCTTAATTGCA+AGG + tig0023205:57486-57505 Msa1406230:intron 30.0%
AAAATGCATTTGTATCAGCA+GGG - tig0023205:57800-57819 None:intergenic 30.0%
AAAAATGCATTTGTATCAGC+AGG - tig0023205:57801-57820 None:intergenic 30.0%
! TGCTGATACAAATGCATTTT+TGG + tig0023205:57800-57819 Msa1406230:intron 30.0%
GAGTGATATGAGTATTTAGT+AGG - tig0023205:57831-57850 None:intergenic 30.0%
AAATATTGGAGCTAGAAAGA+AGG - tig0023205:58047-58066 None:intergenic 30.0%
! TAGCTCCAATATTTTTCTCA+TGG + tig0023205:58053-58072 Msa1406230:intron 30.0%
! TCCAATATTTTTCTCATGGA+TGG + tig0023205:58057-58076 Msa1406230:intron 30.0%
ACCATCCATGAGAAAAATAT+TGG - tig0023205:58061-58080 None:intergenic 30.0%
TGTGGAATGTAAATTCCAAT+AGG + tig0023205:58080-58099 Msa1406230:intron 30.0%
TTCCAATAGGTGATTCATTA+AGG + tig0023205:58093-58112 Msa1406230:intron 30.0%
CGAATTTGGATTTATGAAGT+TGG + tig0023205:58179-58198 Msa1406230:intron 30.0%
ATTTGGATTTATGAAGTTGG+AGG + tig0023205:58182-58201 Msa1406230:intron 30.0%
GGGTATCTCTATAAATGTAA+GGG + tig0023205:58340-58359 Msa1406230:intron 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - tig0023205:58694-58713 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + tig0023205:58695-58714 Msa1406230:intron 30.0%
GTATTATTGGTCATATGTGT+TGG + tig0023205:58723-58742 Msa1406230:intron 30.0%
AAAGTGGGGAAAAAATTGAT+TGG - tig0023205:58971-58990 None:intergenic 30.0%
!!! ATTTTTTCCCCACTTTTTGT+TGG + tig0023205:58975-58994 Msa1406230:intron 30.0%
!!! ATTTTTGGAATTTGCAAGAG+TGG + tig0023205:59009-59028 Msa1406230:intron 30.0%
AAGAGTAGGTTGTAAAGTTT+AGG - tig0023205:59206-59225 None:intergenic 30.0%
! TTACAACCTACTCTTTTTGT+TGG + tig0023205:59211-59230 Msa1406230:intron 30.0%
TGATTCCTATGTAAATTTGG+TGG - tig0023205:59254-59273 None:intergenic 30.0%
! ATCATCTGAGTTGGATAATT+TGG - tig0023205:59431-59450 None:intergenic 30.0%
AGCTTATTAATCATCTGAGT+TGG - tig0023205:59440-59459 None:intergenic 30.0%
CTTTCAAAGCCTTCAATAAT+AGG + tig0023205:60044-60063 Msa1406230:intron 30.0%
! GTGTCCAAACATTATTGATT+TGG + tig0023205:60298-60317 Msa1406230:intron 30.0%
GAGATTAAAGTGTGTGAAAA+CGG - tig0023205:60487-60506 None:intergenic 30.0%
!!! CCTACAACTTTTTTAACTCT+AGG - tig0023205:60724-60743 None:intergenic 30.0%
CCTAGAGTTAAAAAAGTTGT+AGG + tig0023205:60721-60740 Msa1406230:intron 30.0%
!! AATGTTGGTGATTAGTTGTT+AGG - tig0023205:60788-60807 None:intergenic 30.0%
TAACAACTAATCACCAACAT+TGG + tig0023205:60787-60806 Msa1406230:intron 30.0%
ACAATCATCTAACAAAACTG+GGG + tig0023205:60825-60844 Msa1406230:intron 30.0%
! CTAGTACCATGTTTTCTAAA+AGG + tig0023205:60916-60935 Msa1406230:intron 30.0%
!! AAATCTTTACCGGTTTATCA+TGG - tig0023205:61021-61040 None:intergenic 30.0%
TTTGTCGATGAAAGTCAAAA+AGG - tig0023205:61173-61192 None:intergenic 30.0%
! GTTGGATAGAAGTATATAGA+TGG - tig0023205:61289-61308 None:intergenic 30.0%
TAGTCTATTCTCAGTTCAAT+CGG - tig0023205:61325-61344 None:intergenic 30.0%
GAACTGAGAATAGACTAATT+AGG + tig0023205:61328-61347 Msa1406230:intron 30.0%
AAGATTGAACCGCATTAAAT+CGG + tig0023205:61402-61421 Msa1406230:intron 30.0%
TTGAAGAACCAGTGAAAATT+CGG - tig0023205:61496-61515 None:intergenic 30.0%
!!! TCTTTTGGTTTCATTCATGT+AGG + tig0023205:61540-61559 Msa1406230:intron 30.0%
! ATTGATCTAGTTTATGGAGG+AGG + tig0023205:56613-56632 Msa1406230:CDS 35.0%
ATTTCCCAAGCTGTTTATGA+TGG + tig0023205:56658-56677 Msa1406230:CDS 35.0%
TAAATTTGACGATATCACGG+TGG - tig0023205:56786-56805 None:intergenic 35.0%
! TCTCTTGGCATTAGTGTTTT+GGG - tig0023205:56891-56910 None:intergenic 35.0%
TGTGCGATTATTCATTCAAG+TGG + tig0023205:57075-57094 Msa1406230:intron 35.0%
GTGCGATTATTCATTCAAGT+GGG + tig0023205:57076-57095 Msa1406230:intron 35.0%
GAAAGACAAAATGGTTCAGA+AGG - tig0023205:57206-57225 None:intergenic 35.0%
ACATGGAGAGAAAGACAAAA+TGG - tig0023205:57215-57234 None:intergenic 35.0%
! AAAGGGTGTAATATGGAACA+TGG - tig0023205:57232-57251 None:intergenic 35.0%
TACACCCTTTAGATTCTCAT+TGG + tig0023205:57242-57261 Msa1406230:intron 35.0%
CCTTAGTGGAGTTTATTCAT+AGG - tig0023205:57580-57599 None:intergenic 35.0%
CCTATGAATAAACTCCACTA+AGG + tig0023205:57577-57596 Msa1406230:intron 35.0%
!! GATGAGTTTTTGAAGGTAGT+GGG - tig0023205:57766-57785 None:intergenic 35.0%
!! TGATGAGTTTTTGAAGGTAG+TGG - tig0023205:57767-57786 None:intergenic 35.0%
! TATTTTTCTCATGGATGGTG+TGG + tig0023205:58062-58081 Msa1406230:intron 35.0%
TGCCTTAATGAATCACCTAT+TGG - tig0023205:58098-58117 None:intergenic 35.0%
TCATTAAGGCACATGTCAAA+AGG + tig0023205:58107-58126 Msa1406230:intron 35.0%
CAAATTCGTCTATAGTCATG+CGG - tig0023205:58167-58186 None:intergenic 35.0%
! GGGGTATCTCTATAAATGTA+AGG + tig0023205:58339-58358 Msa1406230:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - tig0023205:58459-58478 None:intergenic 35.0%
GGAAAAAATTGATTGGCAGT+TGG - tig0023205:58964-58983 None:intergenic 35.0%
AGTGCTTTCCAACAAAAAGT+GGG - tig0023205:58986-59005 None:intergenic 35.0%
AAGTGCTTTCCAACAAAAAG+TGG - tig0023205:58987-59006 None:intergenic 35.0%
GACAAATTCAATGGAAGAGA+TGG + tig0023205:59111-59130 Msa1406230:intron 35.0%
CAATATCAATCGCTACTCAT+TGG - tig0023205:59149-59168 None:intergenic 35.0%
TAGGTCCACCAAATTTACAT+AGG + tig0023205:59246-59265 Msa1406230:intron 35.0%
TAGGTTAAAAGATGGTTGAC+TGG - tig0023205:59391-59410 None:intergenic 35.0%
!! AGGTCTAATTCCGTTTTTCA+GGG - tig0023205:59573-59592 None:intergenic 35.0%
! AATTCCTTTTGGACATCGTA+TGG - tig0023205:59629-59648 None:intergenic 35.0%
! TAATTAATGGACAACCGAAG+TGG - tig0023205:59681-59700 None:intergenic 35.0%
TGCAAGATCGATGTAAGAAT+GGG - tig0023205:60140-60159 None:intergenic 35.0%
TTGCAAGATCGATGTAAGAA+TGG - tig0023205:60141-60160 None:intergenic 35.0%
ATTCTTACATCGATCTTGCA+AGG + tig0023205:60140-60159 Msa1406230:intron 35.0%
! GTGACCAAACACTATTTTCT+TGG - tig0023205:60190-60209 None:intergenic 35.0%
!!! TTGATTTGGTTTTGTGACCA+TGG + tig0023205:60312-60331 Msa1406230:intron 35.0%
AAGAATATCTCTCTTGCAAG+TGG + tig0023205:60335-60354 Msa1406230:intron 35.0%
! CTATATCTTTGGGTTTGTGT+GGG - tig0023205:60365-60384 None:intergenic 35.0%
CACACAAACCCAAAGATATA+GGG + tig0023205:60364-60383 Msa1406230:intron 35.0%
ACACAAACCCAAAGATATAG+GGG + tig0023205:60365-60384 Msa1406230:intron 35.0%
CTCAGCTACTAGAATTTGAT+CGG + tig0023205:60504-60523 Msa1406230:intron 35.0%
AAATCTGCATCCCATGATAA+GGG + tig0023205:60566-60585 Msa1406230:intron 35.0%
AAAAACAAATCCGTACCATC+AGG + tig0023205:60631-60650 Msa1406230:intron 35.0%
TTGGTGCAGACACAATTATA+TGG - tig0023205:61231-61250 None:intergenic 35.0%
AGAGCTTGTCAAAAATATGG+AGG + tig0023205:61258-61277 Msa1406230:CDS 35.0%
ATCGGTTAAATCGAAAACGT+TGG - tig0023205:61307-61326 None:intergenic 35.0%
CTGAGAATAGACTAATTAGG+TGG + tig0023205:61331-61350 Msa1406230:intron 35.0%
GAATAGACTAATTAGGTGGT+TGG + tig0023205:61335-61354 Msa1406230:intron 35.0%
!! TTAGGTGGTTGGTTTAATCT+AGG + tig0023205:61346-61365 Msa1406230:intron 35.0%
! AATTCGGGTTATGGTTCAAT+TGG - tig0023205:61480-61499 None:intergenic 35.0%
TGAAGAACCAGTGAAAATTC+GGG - tig0023205:61495-61514 None:intergenic 35.0%
GATGATTAGATGGTAATCGA+TGG + tig0023205:61650-61669 Msa1406230:intron 35.0%
TCAAAATGTGAGACAACTCA+AGG + tig0023205:61706-61725 Msa1406230:three_prime_UTR 35.0%
GGTAGAAGATCACAATTTCA+TGG + tig0023205:61738-61757 Msa1406230:three_prime_UTR 35.0%
! GTAAGAGCACACAAAAATCT+CGG - tig0023205:61766-61785 None:intergenic 35.0%
!! ATGATGCTGACTCGTCTATA+GGG - tig0023205:56097-56116 None:intergenic 40.0%
!! AATGATGCTGACTCGTCTAT+AGG - tig0023205:56098-56117 None:intergenic 40.0%
CCTTTGATATGAGTGGTTGA+TGG - tig0023205:56201-56220 None:intergenic 40.0%
CCATCAACCACTCATATCAA+AGG + tig0023205:56198-56217 Msa1406230:five_prime_UTR 40.0%
TCTCTCACCTTTGATATGAG+TGG - tig0023205:56208-56227 None:intergenic 40.0%
TCAAAGGTGAGAGAGAAGAA+TGG + tig0023205:56214-56233 Msa1406230:exon 40.0%
AAGGATGCTGCTATTGAACT+TGG + tig0023205:56320-56339 Msa1406230:CDS 40.0%
ACCACCATCATAAACAGCTT+GGG - tig0023205:56665-56684 None:intergenic 40.0%
ATGGTGGTCGACATGTAATT+GGG + tig0023205:56677-56696 Msa1406230:CDS 40.0%
GAAGAAGAAGATGAAGCTCT+TGG - tig0023205:56707-56726 None:intergenic 40.0%
! CTCTCTTGGCATTAGTGTTT+TGG - tig0023205:56892-56911 None:intergenic 40.0%
CAAAACACTAATGCCAAGAG+AGG + tig0023205:56890-56909 Msa1406230:CDS 40.0%
CTGCATAACTTTACCTCTCT+TGG - tig0023205:56906-56925 None:intergenic 40.0%
GAGGTAAAGTTATGCAGCTT+TGG + tig0023205:56909-56928 Msa1406230:intron 40.0%
TTCATTCAAGTGGGAACTAG+TGG + tig0023205:57085-57104 Msa1406230:intron 40.0%
TCAATATACACCTGGCAATC+TGG + tig0023205:57170-57189 Msa1406230:intron 40.0%
CAATATACACCTGGCAATCT+GGG + tig0023205:57171-57190 Msa1406230:intron 40.0%
AATATACACCTGGCAATCTG+GGG + tig0023205:57172-57191 Msa1406230:intron 40.0%
GCATCAAAGGAAAGCTGAAA+TGG + tig0023205:57974-57993 Msa1406230:CDS 40.0%
TTGTTTGTACCAACCTGGTA+AGG - tig0023205:58024-58043 None:intergenic 40.0%
CGCATGACTATAGACGAATT+TGG + tig0023205:58165-58184 Msa1406230:intron 40.0%
TTGTCACGATTGCATGAATG+CGG - tig0023205:58211-58230 None:intergenic 40.0%
TCATGCAATCGTGACAACAT+CGG + tig0023205:58214-58233 Msa1406230:intron 40.0%
ATATTCTAACCGCGTGAACT+AGG + tig0023205:58318-58337 Msa1406230:intron 40.0%
TATTCTAACCGCGTGAACTA+GGG + tig0023205:58319-58338 Msa1406230:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - tig0023205:58699-58718 None:intergenic 40.0%
TGTGCTGCGTATTAATTGGA+GGG - tig0023205:58559-58578 None:intergenic 40.0%
GTAGTGTGCTGCGTATTAAT+TGG - tig0023205:58563-58582 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0023205:58699-58718 Msa1406230:intron 40.0%
!! TGAAACGGAGGGAGTATTAT+TGG + tig0023205:58710-58729 Msa1406230:intron 40.0%
GTGCTTTCCAACAAAAAGTG+GGG - tig0023205:58985-59004 None:intergenic 40.0%
!! GAGGTCTAATTCCGTTTTTC+AGG - tig0023205:59574-59593 None:intergenic 40.0%
GACATGTCAATACGACTTAG+AGG - tig0023205:59593-59612 None:intergenic 40.0%
AAGACCATACGATGTCCAAA+AGG + tig0023205:59622-59641 Msa1406230:intron 40.0%
ATTACATGAATGCGCCACTT+CGG + tig0023205:59664-59683 Msa1406230:intron 40.0%
!! GAAGGCTTTGAAAGCGATTA+AGG - tig0023205:60038-60057 None:intergenic 40.0%
GGGACCAAGAAAATAGTGTT+TGG + tig0023205:60183-60202 Msa1406230:intron 40.0%
GCAAGAGAGATATTCTTCCA+TGG - tig0023205:60332-60351 None:intergenic 40.0%
! CCTATATCTTTGGGTTTGTG+TGG - tig0023205:60366-60385 None:intergenic 40.0%
CCACACAAACCCAAAGATAT+AGG + tig0023205:60363-60382 Msa1406230:intron 40.0%
GCTACTAGAATTTGATCGGA+TGG + tig0023205:60508-60527 Msa1406230:intron 40.0%
GAAATCTGCATCCCATGATA+AGG + tig0023205:60565-60584 Msa1406230:intron 40.0%
ATCTAACAAAACTGGGGAAG+TGG + tig0023205:60831-60850 Msa1406230:intron 40.0%
TATTTGCATGAAGGTGGGTA+TGG + tig0023205:60947-60966 Msa1406230:intron 40.0%
ATTTGCATGAAGGTGGGTAT+GGG + tig0023205:60948-60967 Msa1406230:intron 40.0%
ACTTGGCATCCATGATAAAC+CGG + tig0023205:61009-61028 Msa1406230:CDS 40.0%
ACAATTATATGGCGAGCTGT+GGG - tig0023205:61220-61239 None:intergenic 40.0%
!! TTGACAAGCTCTTTTGGTGT+TGG - tig0023205:61250-61269 None:intergenic 40.0%
! GCGATTCAACCGATTTAATG+CGG - tig0023205:61414-61433 None:intergenic 40.0%
GCATTAAATCGGTTGAATCG+CGG + tig0023205:61413-61432 Msa1406230:intron 40.0%
! ACCATAACCCGAATTTTCAC+TGG + tig0023205:61485-61504 Msa1406230:intron 40.0%
! ACCAGTGAAAATTCGGGTTA+TGG - tig0023205:61489-61508 None:intergenic 40.0%
! TTCATTTTCCCAGCTTAGCT+TGG - tig0023205:61596-61615 None:intergenic 40.0%
GACAACTCAAGGAACTACTA+TGG + tig0023205:61717-61736 Msa1406230:three_prime_UTR 40.0%
GTGGTATAAGCGCGGTTATA+TGG - tig0023205:56177-56196 None:intergenic 45.0%
!! TTGATGGTGTGGTATAAGCG+CGG - tig0023205:56185-56204 None:intergenic 45.0%
!! GATATGAGTGGTTGATGGTG+TGG - tig0023205:56196-56215 None:intergenic 45.0%
TCCCAAGCTGTTTATGATGG+TGG + tig0023205:56661-56680 Msa1406230:CDS 45.0%
GACCACCATCATAAACAGCT+TGG - tig0023205:56666-56685 None:intergenic 45.0%
! GATGGTGGTCGACATGTAAT+TGG + tig0023205:56676-56695 Msa1406230:CDS 45.0%
GGCACAATGCGATTATGCTA+GGG - tig0023205:56765-56784 None:intergenic 45.0%
TGGCACAATGCGATTATGCT+AGG - tig0023205:56766-56785 None:intergenic 45.0%
ATAAACAACCCCAGATTGCC+AGG - tig0023205:57183-57202 None:intergenic 45.0%
! CATTGCAAGGCTAATTTGCC+AGG + tig0023205:57439-57458 Msa1406230:intron 45.0%
! TTGCCAGGATTAGCGATTAC+AGG + tig0023205:57454-57473 Msa1406230:intron 45.0%
! TGCCAGGATTAGCGATTACA+GGG + tig0023205:57455-57474 Msa1406230:intron 45.0%
ACTACTATGCTGCAGCTTAC+TGG + tig0023205:57915-57934 Msa1406230:intron 45.0%
CAGCTTACTGGTGAAACAGT+AGG + tig0023205:57927-57946 Msa1406230:intron 45.0%
CAGTAGCTGACATGCATCAA+AGG + tig0023205:57961-57980 Msa1406230:CDS 45.0%
! GATGCCTTTATAGCCTTACC+AGG + tig0023205:58008-58027 Msa1406230:CDS 45.0%
CCAACCTGGTAAGGCTATAA+AGG - tig0023205:58015-58034 None:intergenic 45.0%
! CCTTTATAGCCTTACCAGGT+TGG + tig0023205:58012-58031 Msa1406230:intron 45.0%
GAAGGTTGTTTGTACCAACC+TGG - tig0023205:58029-58048 None:intergenic 45.0%
ATTCTAACCGCGTGAACTAG+GGG + tig0023205:58320-58339 Msa1406230:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - tig0023205:58698-58717 None:intergenic 45.0%
GTGTGCTGCGTATTAATTGG+AGG - tig0023205:58560-58579 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + tig0023205:58698-58717 Msa1406230:intron 45.0%
CAATGGAAGAGATGGTGAAG+AGG + tig0023205:59119-59138 Msa1406230:intron 45.0%
TCATGGGCCCCTATATCTTT+GGG - tig0023205:60375-60394 None:intergenic 45.0%
ATCATGGGCCCCTATATCTT+TGG - tig0023205:60376-60395 None:intergenic 45.0%
AGATATAGGGGCCCATGATA+AGG + tig0023205:60377-60396 Msa1406230:intron 45.0%
GATATAGGGGCCCATGATAA+GGG + tig0023205:60378-60397 Msa1406230:intron 45.0%
TGCGTGAAGCAATTACAGCA+GGG - tig0023205:60413-60432 None:intergenic 45.0%
GCCATTGAACACTGATCCAA+CGG + tig0023205:60446-60465 Msa1406230:intron 45.0%
ACCGTTGGATCAGTGTTCAA+TGG - tig0023205:60450-60469 None:intergenic 45.0%
GACAGAACTATCGTAACCGT+TGG - tig0023205:60465-60484 None:intergenic 45.0%
CTAGAATTTGATCGGATGGC+TGG + tig0023205:60512-60531 Msa1406230:intron 45.0%
AGATTTCCTGCTGTAACAGC+AGG - tig0023205:60552-60571 None:intergenic 45.0%
GAGAAAGCTGCCCTTATCAT+GGG - tig0023205:60579-60598 None:intergenic 45.0%
AGAGAAAGCTGCCCTTATCA+TGG - tig0023205:60580-60599 None:intergenic 45.0%
AGCTCCTTGAGGTGATAACA+TGG + tig0023205:60981-61000 Msa1406230:CDS 45.0%
GCTCCTTGAGGTGATAACAT+GGG + tig0023205:60982-61001 Msa1406230:CDS 45.0%
GTGGGATTGCTGAATGTTGA+TGG + tig0023205:61136-61155 Msa1406230:CDS 45.0%
GACTTTCATCGACAAAGCTG+TGG + tig0023205:61177-61196 Msa1406230:CDS 45.0%
TTTCATCGACAAAGCTGTGG+AGG + tig0023205:61180-61199 Msa1406230:CDS 45.0%
CAATTATATGGCGAGCTGTG+GGG - tig0023205:61219-61238 None:intergenic 45.0%
CACAATTATATGGCGAGCTG+TGG - tig0023205:61221-61240 None:intergenic 45.0%
AGGCAACTCTTTCATGCTGT+GGG - tig0023205:61573-61592 None:intergenic 45.0%
!! ATTTTCCCAGCTTAGCTTGG+AGG - tig0023205:61593-61612 None:intergenic 45.0%
!! AATTAAATATTAGATTTATA+TGG - tig0023205:57373-57392 None:intergenic 5.0%
!!! AATATAATTTTGATATATTT+TGG - tig0023205:58785-58804 None:intergenic 5.0%
GACTCGTCTATAGGGAACCA+AGG - tig0023205:56089-56108 None:intergenic 50.0%
! GTGTTTTGTGGTAGTAGCCC+TGG + tig0023205:56281-56300 Msa1406230:CDS 50.0%
GTTTATGGAGGAGGCAGCAT+TGG + tig0023205:56622-56641 Msa1406230:CDS 50.0%
!! AGGAGGCAGCATTGGTTTGA+TGG + tig0023205:56630-56649 Msa1406230:CDS 50.0%
!! GGAGGCAGCATTGGTTTGAT+GGG + tig0023205:56631-56650 Msa1406230:CDS 50.0%
!! GAGGCAGCATTGGTTTGATG+GGG + tig0023205:56632-56651 Msa1406230:CDS 50.0%
GTCCCTGTAATCGCTAATCC+TGG - tig0023205:57460-57479 None:intergenic 50.0%
AGAGATACCCCTAGTTCACG+CGG - tig0023205:58330-58349 None:intergenic 50.0%
GGAATTTGCAAGAGTGGTGC+AGG + tig0023205:59015-59034 Msa1406230:intron 50.0%
GGATCCAGGTCCCTTATCAT+GGG - tig0023205:60391-60410 None:intergenic 50.0%
GCGTGAAGCAATTACAGCAG+GGG - tig0023205:60412-60431 None:intergenic 50.0%
CTGCGTGAAGCAATTACAGC+AGG - tig0023205:60414-60433 None:intergenic 50.0%
GCTGTAATTGCTTCACGCAG+TGG + tig0023205:60414-60433 Msa1406230:intron 50.0%
ATAGCACCTGCTGTTACAGC+AGG + tig0023205:60543-60562 Msa1406230:intron 50.0%
ATCGACAAAGCTGTGGAGGA+AGG + tig0023205:61184-61203 Msa1406230:CDS 50.0%
GAGGCAACTCTTTCATGCTG+TGG - tig0023205:61574-61593 None:intergenic 50.0%
AGTTGCCTCCAAGCTAAGCT+GGG + tig0023205:61585-61604 Msa1406230:CDS 50.0%
GGGATCCAGGTCCCTTATCA+TGG - tig0023205:60392-60411 None:intergenic 55.0%
GCAATTACAGCAGGGGATCC+AGG - tig0023205:60405-60424 None:intergenic 55.0%
AGGTGGGTATGGGACACTTG+AGG + tig0023205:60958-60977 Msa1406230:intron 55.0%
GACACTTGAGGAGCTCCTTG+AGG + tig0023205:60970-60989 Msa1406230:CDS 55.0%
GAGTTGCCTCCAAGCTAAGC+TGG + tig0023205:61584-61603 Msa1406230:CDS 55.0%
GGCAGTTGGCACGTCACAAG+TGG - tig0023205:58950-58969 None:intergenic 60.0%
GGGGCCCATGATAAGGGACC+TGG + tig0023205:60384-60403 Msa1406230:intron 65.0%
Chromosome Type Strat End Strand Name
tig0023205 gene 56007 61846 56007 ID=Msa1406230;Name=Msa1406230
tig0023205 mRNA 56007 61846 56007 ID=Msa1406230-mRNA-1;Parent=Msa1406230;Name=Msa1406230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=226|1|1|1|0.71|0.75|8|191|209
tig0023205 exon 56007 56352 56007 ID=Msa1406230-mRNA-1:exon:24475;Parent=Msa1406230-mRNA-1
tig0023205 exon 56601 56698 56601 ID=Msa1406230-mRNA-1:exon:24476;Parent=Msa1406230-mRNA-1
tig0023205 exon 56881 56911 56881 ID=Msa1406230-mRNA-1:exon:24477;Parent=Msa1406230-mRNA-1
tig0023205 exon 57930 58029 57930 ID=Msa1406230-mRNA-1:exon:24478;Parent=Msa1406230-mRNA-1
tig0023205 exon 60960 61030 60960 ID=Msa1406230-mRNA-1:exon:24479;Parent=Msa1406230-mRNA-1
tig0023205 exon 61136 61279 61136 ID=Msa1406230-mRNA-1:exon:24480;Parent=Msa1406230-mRNA-1
tig0023205 exon 61562 61658 61562 ID=Msa1406230-mRNA-1:exon:24481;Parent=Msa1406230-mRNA-1
tig0023205 exon 61687 61846 61687 ID=Msa1406230-mRNA-1:exon:24482;Parent=Msa1406230-mRNA-1
tig0023205 five_prime_UTR 56007 56232 56007 ID=Msa1406230-mRNA-1:five_prime_utr;Parent=Msa1406230-mRNA-1
tig0023205 CDS 56233 56352 56233 ID=Msa1406230-mRNA-1:cds;Parent=Msa1406230-mRNA-1
tig0023205 CDS 56601 56698 56601 ID=Msa1406230-mRNA-1:cds;Parent=Msa1406230-mRNA-1
tig0023205 CDS 56881 56911 56881 ID=Msa1406230-mRNA-1:cds;Parent=Msa1406230-mRNA-1
tig0023205 CDS 57930 58029 57930 ID=Msa1406230-mRNA-1:cds;Parent=Msa1406230-mRNA-1
tig0023205 CDS 60960 61030 60960 ID=Msa1406230-mRNA-1:cds;Parent=Msa1406230-mRNA-1
tig0023205 CDS 61136 61279 61136 ID=Msa1406230-mRNA-1:cds;Parent=Msa1406230-mRNA-1
tig0023205 CDS 61562 61627 61562 ID=Msa1406230-mRNA-1:cds;Parent=Msa1406230-mRNA-1
tig0023205 three_prime_UTR 61628 61658 61628 ID=Msa1406230-mRNA-1:three_prime_utr;Parent=Msa1406230-mRNA-1
tig0023205 three_prime_UTR 61687 61846 61687 ID=Msa1406230-mRNA-1:three_prime_utr;Parent=Msa1406230-mRNA-1
Gene Sequence

>Msa1406230

ATGGAGAGAGAGATAGAGATGAAGCTATCAAAGTTTAAGAGAATTTGTGTGTTTTGTGGTAGTAGCCCTGGTAACAAAACTAGCTATAAGGATGCTGCTATTGAACTTGGAAAAGAATTGGTTTCAAGAAATATTGATCTAGTTTATGGAGGAGGCAGCATTGGTTTGATGGGGTTGATTTCCCAAGCTGTTTATGATGGTGGTCGACATGTAATTGGAGTGATTCCCAAAACACTAATGCCAAGAGAGCTTACTGGTGAAACAGTAGGAGAAGTGAAAGCAGTAGCTGACATGCATCAAAGGAAAGCTGAAATGGCTAGAAATTCTGATGCCTTTATAGCCTTACCAGGTGGGTATGGGACACTTGAGGAGCTCCTTGAGGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATTCCTTTTTGACTTTCATCGACAAAGCTGTGGAGGAAGGATTCATTAGCCCCACAGCTCGCCATATAATTGTGTCTGCACCAACACCAAAAGAGCTTGTCAAAAATATGGAGGAGTATTTCCCACAGCATGAAAGAGTTGCCTCCAAGCTAAGCTGGGAAAATGAACAGCTAGATTAG

Protein sequence

>Msa1406230

MEREIEMKLSKFKRICVFCGSSPGNKTSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLISQAVYDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMARNSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSFLTFIDKAVEEGFISPTARHIIVSAPTPKELVKNMEEYFPQHERVASKLSWENEQLD*