Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442090 | XP_003598326.1 | 98.554 | 484 | 7 | 0 | 1 | 484 | 1 | 484 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442090 | sp|Q9C9H5|GUN9_ARATH | 74.167 | 480 | 123 | 1 | 3 | 482 | 2 | 480 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442090 | G7IVD9 | 98.554 | 484 | 7 | 0 | 1 | 484 | 1 | 484 | 0.0 | 999 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078160 | Msa0442090 | -0.802556 | 5.305027e-49 | -8.615850e-47 |
| Msa0130360 | Msa0442090 | 0.811458 | 6.931756e-51 | -8.615850e-47 |
| Msa0134830 | Msa0442090 | 0.808952 | 2.405589e-50 | -8.615850e-47 |
| Msa0173380 | Msa0442090 | 0.829406 | 5.241572e-55 | -8.615850e-47 |
| Msa0188560 | Msa0442090 | 0.804035 | 2.620604e-49 | -8.615850e-47 |
| Msa0206370 | Msa0442090 | 0.821327 | 4.281976e-53 | -8.615850e-47 |
| Msa0221180 | Msa0442090 | 0.826578 | 2.512240e-54 | -8.615850e-47 |
| Msa0230920 | Msa0442090 | 0.815387 | 9.491323e-52 | -8.615850e-47 |
| Msa0372100 | Msa0442090 | 0.811139 | 8.128765e-51 | -8.615850e-47 |
| Msa0394500 | Msa0442090 | 0.984078 | 1.585804e-159 | -8.615850e-47 |
| Msa0432200 | Msa0442090 | 0.812415 | 4.289181e-51 | -8.615850e-47 |
| Msa0442090 | Msa0463820 | -0.800365 | 1.491177e-48 | -8.615850e-47 |
| Msa0442090 | Msa0480900 | -0.801256 | 9.812475e-49 | -8.615850e-47 |
| Msa0442090 | Msa0481670 | 0.833756 | 4.441949e-56 | -8.615850e-47 |
| Msa0442090 | Msa0498610 | 0.813405 | 2.602910e-51 | -8.615850e-47 |
| Msa0442090 | Msa0521060 | 0.812572 | 3.963593e-51 | -8.615850e-47 |
| Msa0442090 | Msa0541880 | 0.800417 | 1.455740e-48 | -8.615850e-47 |
| Msa0442090 | Msa0557850 | 0.810978 | 8.807276e-51 | -8.615850e-47 |
| Msa0442090 | Msa0574660 | 0.809102 | 2.234107e-50 | -8.615850e-47 |
| Msa0442090 | Msa0612520 | 0.800417 | 1.455482e-48 | -8.615850e-47 |
| Msa0442090 | Msa0620900 | 0.801550 | 8.540955e-49 | -8.615850e-47 |
| Msa0442090 | Msa0653160 | 0.800195 | 1.615408e-48 | -8.615850e-47 |
| Msa0442090 | Msa0657210 | 0.800210 | 1.603890e-48 | -8.615850e-47 |
| Msa0442090 | Msa0660090 | 0.818774 | 1.644309e-52 | -8.615850e-47 |
| Msa0442090 | Msa0662230 | -0.805198 | 1.498707e-49 | -8.615850e-47 |
| Msa0442090 | Msa0667680 | -0.806093 | 9.725507e-50 | -8.615850e-47 |
| Msa0442090 | Msa0708020 | 0.810824 | 9.511352e-51 | -8.615850e-47 |
| Msa0442090 | Msa0734700 | 0.826674 | 2.382796e-54 | -8.615850e-47 |
| Msa0442090 | Msa0755480 | -0.800713 | 1.266591e-48 | -8.615850e-47 |
| Msa0442090 | Msa0813610 | 0.817379 | 3.399486e-52 | -8.615850e-47 |
| Msa0442090 | Msa0847140 | 0.806567 | 7.727563e-50 | -8.615850e-47 |
| Msa0442090 | Msa0854230 | 0.803588 | 3.244549e-49 | -8.615850e-47 |
| Msa0442090 | Msa0876630 | 0.820269 | 7.499924e-53 | -8.615850e-47 |
| Msa0442090 | Msa0903570 | -0.807650 | 4.556453e-50 | -8.615850e-47 |
| Msa0442090 | Msa0978980 | 0.842306 | 2.803068e-58 | -8.615850e-47 |
| Msa0442090 | Msa1019420 | 0.803964 | 2.710735e-49 | -8.615850e-47 |
| Msa0442090 | Msa1040330 | 0.809227 | 2.100233e-50 | -8.615850e-47 |
| Msa0442090 | Msa1042300 | 0.841087 | 5.876286e-58 | -8.615850e-47 |
| Msa0442090 | Msa1046120 | 0.813610 | 2.345492e-51 | -8.615850e-47 |
| Msa0442090 | Msa1052730 | 0.820692 | 5.995637e-53 | -8.615850e-47 |
| Msa0442090 | Msa1091050 | 0.812104 | 5.014493e-51 | -8.615850e-47 |
| Msa0442090 | Msa1111910 | 0.807732 | 4.377508e-50 | -8.615850e-47 |
| Msa0442090 | Msa1130780 | 0.836235 | 1.054132e-56 | -8.615850e-47 |
| Msa0442090 | Msa1133970 | 0.806322 | 8.703470e-50 | -8.615850e-47 |
| Msa0442090 | Msa1134040 | 0.805141 | 1.540514e-49 | -8.615850e-47 |
| Msa0442090 | Msa1136970 | -0.812980 | 3.227054e-51 | -8.615850e-47 |
| Msa0442090 | Msa1154320 | 0.809624 | 1.725613e-50 | -8.615850e-47 |
| Msa0442090 | Msa1192360 | 0.805286 | 1.436296e-49 | -8.615850e-47 |
| Msa0442090 | Msa1220720 | 0.817624 | 2.994191e-52 | -8.615850e-47 |
| Msa0442090 | Msa1231440 | 0.845224 | 4.640468e-59 | -8.615850e-47 |
| Msa0442090 | Msa1242160 | 0.806274 | 8.908019e-50 | -8.615850e-47 |
| Msa0442090 | Msa1246830 | 0.825844 | 3.755952e-54 | -8.615850e-47 |
| Msa0442090 | Msa1255710 | 0.818080 | 2.362745e-52 | -8.615850e-47 |
| Msa0442090 | Msa1265570 | 0.834468 | 2.945984e-56 | -8.615850e-47 |
| Msa0442090 | Msa1278000 | 0.844836 | 5.905267e-59 | -8.615850e-47 |
| Msa0442090 | Msa1283960 | 0.805786 | 1.128192e-49 | -8.615850e-47 |
| Msa0442090 | Msa1288070 | 0.821870 | 3.208200e-53 | -8.615850e-47 |
| Msa0442090 | Msa1290090 | -0.805337 | 1.401794e-49 | -8.615850e-47 |
| Msa0442090 | Msa1296860 | 0.816572 | 5.161379e-52 | -8.615850e-47 |
| Msa0442090 | Msa1322960 | 0.800326 | 1.518828e-48 | -8.615850e-47 |
| Msa0442090 | Msa1334670 | 0.832381 | 9.764071e-56 | -8.615850e-47 |
| Msa0442090 | Msa1341750 | 0.825431 | 4.706455e-54 | -8.615850e-47 |
| Msa0442090 | Msa1343460 | 0.800675 | 1.289706e-48 | -8.615850e-47 |
| Msa0442090 | Msa1356450 | 0.800686 | 1.282815e-48 | -8.615850e-47 |
| Msa0442090 | Msa1362590 | 0.821193 | 4.599070e-53 | -8.615850e-47 |
| Msa0442090 | Msa1365230 | 0.832992 | 6.886551e-56 | -8.615850e-47 |
| Msa0442090 | Msa1385570 | 0.803264 | 3.788188e-49 | -8.615850e-47 |
| Msa0442090 | Msa1387100 | -0.804794 | 1.820430e-49 | -8.615850e-47 |
| Msa0442090 | Msa1389820 | 0.802752 | 4.832052e-49 | -8.615850e-47 |
| Msa0442090 | Msa1417220 | 0.814474 | 1.512760e-51 | -8.615850e-47 |
| Msa0442090 | Msa1417930 | 0.829950 | 3.863217e-55 | -8.615850e-47 |
| Msa0442090 | Msa1445530 | 0.801366 | 9.315214e-49 | -8.615850e-47 |
| Msa0442090 | Msa1450290 | 0.802096 | 6.596999e-49 | -8.615850e-47 |
| Msa0442090 | Msa1456040 | 0.804080 | 2.565085e-49 | -8.615850e-47 |
| Msa0442090 | Msa1463640 | 0.810106 | 1.359556e-50 | -8.615850e-47 |
| Msa0262750 | Msa0442090 | 0.816056 | 6.731129e-52 | -8.615850e-47 |
| Msa0264230 | Msa0442090 | 0.816012 | 6.885934e-52 | -8.615850e-47 |
| Msa0300470 | Msa0442090 | 0.826247 | 3.012116e-54 | -8.615850e-47 |
| Msa0336430 | Msa0442090 | 0.831254 | 1.852245e-55 | -8.615850e-47 |
| Msa0336460 | Msa0442090 | 0.829667 | 4.529205e-55 | -8.615850e-47 |
| Msa0336520 | Msa0442090 | 0.831319 | 1.785392e-55 | -8.615850e-47 |
| Msa0337970 | Msa0442090 | 0.813897 | 2.028404e-51 | -8.615850e-47 |
| Msa0347780 | Msa0442090 | 0.922186 | 1.363709e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442090 | MtrunA17_Chr3g0080171 | 98.554 | 484 | 7 | 0 | 1 | 484 | 1 | 484 | 0.0 | 999 |
| Msa0442090 | MtrunA17_Chr3g0119821 | 58.658 | 462 | 186 | 2 | 25 | 482 | 35 | 495 | 0.0 | 552 |
| Msa0442090 | MtrunA17_Chr1g0195271 | 59.653 | 461 | 180 | 3 | 25 | 481 | 39 | 497 | 0.0 | 548 |
| Msa0442090 | MtrunA17_Chr3g0145261 | 57.082 | 466 | 191 | 5 | 25 | 483 | 24 | 487 | 0.0 | 532 |
| Msa0442090 | MtrunA17_Chr8g0391391 | 55.699 | 465 | 199 | 5 | 25 | 483 | 30 | 493 | 0.0 | 518 |
| Msa0442090 | MtrunA17_Chr4g0018301 | 53.728 | 456 | 208 | 3 | 25 | 480 | 45 | 497 | 1.97e-172 | 494 |
| Msa0442090 | MtrunA17_Chr4g0018361 | 52.977 | 487 | 211 | 9 | 8 | 480 | 7 | 489 | 6.76e-171 | 490 |
| Msa0442090 | MtrunA17_Chr5g0397201 | 49.367 | 474 | 229 | 6 | 15 | 484 | 30 | 496 | 1.18e-156 | 454 |
| Msa0442090 | MtrunA17_Chr8g0388051 | 47.669 | 472 | 231 | 8 | 25 | 484 | 28 | 495 | 3.53e-143 | 424 |
| Msa0442090 | MtrunA17_Chr3g0119371 | 45.585 | 487 | 248 | 8 | 6 | 480 | 24 | 505 | 1.06e-141 | 417 |
| Msa0442090 | MtrunA17_Chr5g0439311 | 43.952 | 496 | 253 | 10 | 1 | 480 | 10 | 496 | 4.01e-140 | 412 |
| Msa0442090 | MtrunA17_Chr1g0164201 | 46.694 | 484 | 246 | 8 | 4 | 481 | 5 | 482 | 9.14e-139 | 408 |
| Msa0442090 | MtrunA17_Chr3g0086311 | 44.676 | 479 | 251 | 6 | 9 | 481 | 10 | 480 | 8.15e-132 | 390 |
| Msa0442090 | MtrunA17_Chr4g0038131 | 46.368 | 468 | 232 | 10 | 25 | 478 | 28 | 490 | 1.70e-126 | 382 |
| Msa0442090 | MtrunA17_Chr5g0397181 | 46.633 | 401 | 203 | 6 | 86 | 482 | 1 | 394 | 1.80e-121 | 361 |
| Msa0442090 | MtrunA17_Chr3g0142501 | 41.667 | 468 | 249 | 10 | 26 | 478 | 58 | 516 | 1.16e-111 | 340 |
| Msa0442090 | MtrunA17_Chr8g0372031 | 42.766 | 470 | 245 | 12 | 24 | 478 | 62 | 522 | 1.29e-107 | 330 |
| Msa0442090 | MtrunA17_Chr3g0136381 | 43.889 | 360 | 193 | 4 | 20 | 377 | 25 | 377 | 2.54e-104 | 318 |
| Msa0442090 | MtrunA17_Chr4g0018341 | 51.264 | 277 | 133 | 2 | 204 | 480 | 2 | 276 | 2.80e-94 | 287 |
| Msa0442090 | MtrunA17_Chr2g0291461 | 42.137 | 496 | 236 | 18 | 25 | 483 | 111 | 592 | 8.05e-94 | 296 |
| Msa0442090 | MtrunA17_Chr4g0022271 | 95.000 | 140 | 2 | 1 | 324 | 463 | 20 | 154 | 2.27e-90 | 273 |
| Msa0442090 | MtrunA17_Chr3g0120661 | 40.535 | 486 | 243 | 19 | 25 | 477 | 116 | 588 | 3.88e-90 | 287 |
| Msa0442090 | MtrunA17_Chr5g0444721 | 42.857 | 371 | 197 | 6 | 122 | 478 | 193 | 562 | 2.95e-88 | 281 |
| Msa0442090 | MtrunA17_Chr5g0444721 | 42.286 | 175 | 93 | 4 | 4 | 171 | 12 | 185 | 3.79e-32 | 129 |
| Msa0442090 | MtrunA17_Chr3g0126111 | 34.766 | 512 | 282 | 17 | 6 | 477 | 81 | 580 | 1.86e-81 | 264 |
| Msa0442090 | MtrunA17_Chr4g0018351 | 59.459 | 185 | 74 | 1 | 25 | 209 | 30 | 213 | 1.40e-67 | 216 |
| Msa0442090 | MtrunA17_Chr7g0269571 | 56.213 | 169 | 62 | 2 | 324 | 481 | 43 | 210 | 7.22e-62 | 201 |
| Msa0442090 | MtrunA17_Chr1g0164181 | 44.910 | 167 | 91 | 1 | 312 | 478 | 164 | 329 | 5.60e-40 | 147 |
| Msa0442090 | MtrunA17_Chr1g0164181 | 46.632 | 193 | 97 | 4 | 67 | 257 | 3 | 191 | 1.82e-35 | 134 |
| Msa0442090 | MtrunA17_Chr4g0072811 | 37.805 | 164 | 96 | 4 | 316 | 477 | 3 | 162 | 4.84e-26 | 105 |
| Msa0442090 | MtrunA17_Chr3g0136371 | 48.936 | 94 | 47 | 1 | 377 | 470 | 1 | 93 | 1.79e-21 | 89.4 |
| Msa0442090 | MtrunA17_Chr7g0269561 | 39.130 | 92 | 38 | 2 | 234 | 321 | 25 | 102 | 7.25e-13 | 65.5 |
| Msa0442090 | MtrunA17_Chr5g0397171 | 61.538 | 39 | 15 | 0 | 25 | 63 | 41 | 79 | 2.75e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442090 | AT1G71380.1 | 74.167 | 480 | 123 | 1 | 3 | 482 | 2 | 480 | 0.0 | 736 |
| Msa0442090 | AT1G22880.1 | 72.878 | 483 | 129 | 2 | 1 | 483 | 1 | 481 | 0.0 | 712 |
| Msa0442090 | AT1G22880.2 | 73.367 | 398 | 105 | 1 | 86 | 483 | 1 | 397 | 0.0 | 606 |
| Msa0442090 | AT4G02290.1 | 61.207 | 464 | 174 | 3 | 22 | 481 | 49 | 510 | 0.0 | 575 |
| Msa0442090 | AT1G02800.1 | 61.605 | 461 | 169 | 4 | 25 | 481 | 43 | 499 | 0.0 | 568 |
| Msa0442090 | AT1G70710.1 | 55.828 | 489 | 208 | 5 | 2 | 484 | 3 | 489 | 0.0 | 548 |
| Msa0442090 | AT1G23210.1 | 55.000 | 480 | 210 | 3 | 8 | 483 | 11 | 488 | 0.0 | 535 |
| Msa0442090 | AT4G39010.1 | 53.863 | 466 | 207 | 4 | 25 | 483 | 29 | 493 | 5.93e-179 | 511 |
| Msa0442090 | AT4G02290.2 | 60.750 | 400 | 151 | 3 | 86 | 481 | 1 | 398 | 1.86e-169 | 483 |
| Msa0442090 | AT1G22880.3 | 75.000 | 324 | 80 | 1 | 1 | 324 | 1 | 323 | 8.40e-169 | 479 |
| Msa0442090 | AT4G39000.1 | 47.143 | 490 | 251 | 4 | 1 | 483 | 1 | 489 | 1.48e-156 | 454 |
| Msa0442090 | AT4G23560.1 | 50.418 | 478 | 224 | 8 | 5 | 478 | 4 | 472 | 2.99e-154 | 447 |
| Msa0442090 | AT4G09740.1 | 49.687 | 479 | 226 | 9 | 5 | 478 | 4 | 472 | 4.64e-150 | 437 |
| Msa0442090 | AT4G38990.2 | 45.679 | 486 | 251 | 5 | 10 | 483 | 8 | 492 | 1.23e-147 | 431 |
| Msa0442090 | AT2G32990.1 | 45.621 | 491 | 248 | 8 | 5 | 478 | 14 | 502 | 3.67e-143 | 421 |
| Msa0442090 | AT4G11050.2 | 47.109 | 467 | 229 | 8 | 25 | 478 | 26 | 487 | 1.38e-140 | 415 |
| Msa0442090 | AT4G11050.3 | 47.109 | 467 | 229 | 8 | 25 | 478 | 26 | 487 | 5.54e-140 | 416 |
| Msa0442090 | AT4G11050.1 | 47.109 | 467 | 229 | 8 | 25 | 478 | 26 | 487 | 6.57e-140 | 416 |
| Msa0442090 | AT1G64390.1 | 47.425 | 466 | 229 | 8 | 25 | 478 | 25 | 486 | 9.32e-139 | 413 |
| Msa0442090 | AT3G43860.2 | 45.175 | 487 | 253 | 6 | 2 | 482 | 7 | 485 | 1.30e-138 | 408 |
| Msa0442090 | AT3G43860.1 | 45.175 | 487 | 253 | 6 | 2 | 482 | 7 | 485 | 1.30e-138 | 408 |
| Msa0442090 | AT4G39010.2 | 51.811 | 359 | 166 | 3 | 25 | 376 | 29 | 387 | 2.10e-133 | 391 |
| Msa0442090 | AT2G44540.1 | 44.444 | 477 | 255 | 7 | 8 | 478 | 16 | 488 | 9.15e-133 | 393 |
| Msa0442090 | AT2G44570.1 | 45.455 | 484 | 249 | 9 | 5 | 481 | 17 | 492 | 5.53e-132 | 391 |
| Msa0442090 | AT2G44550.1 | 44.351 | 478 | 255 | 7 | 6 | 478 | 16 | 487 | 6.63e-131 | 388 |
| Msa0442090 | AT2G44560.1 | 44.764 | 487 | 256 | 8 | 1 | 481 | 12 | 491 | 1.54e-126 | 377 |
| Msa0442090 | AT1G48930.1 | 45.708 | 466 | 237 | 7 | 25 | 478 | 30 | 491 | 2.57e-118 | 360 |
| Msa0442090 | AT1G75680.1 | 45.295 | 457 | 230 | 10 | 26 | 471 | 58 | 505 | 7.01e-117 | 353 |
| Msa0442090 | AT1G19940.2 | 42.857 | 462 | 244 | 10 | 25 | 475 | 48 | 500 | 3.05e-116 | 352 |
| Msa0442090 | AT1G19940.1 | 42.857 | 462 | 244 | 10 | 25 | 475 | 48 | 500 | 3.05e-116 | 352 |
| Msa0442090 | AT5G49720.1 | 40.351 | 513 | 257 | 17 | 7 | 482 | 88 | 588 | 7.85e-90 | 286 |
| Msa0442090 | AT2G44570.2 | 42.785 | 395 | 211 | 9 | 5 | 392 | 17 | 403 | 1.63e-89 | 279 |
| Msa0442090 | AT4G38990.1 | 42.450 | 351 | 174 | 3 | 10 | 355 | 8 | 335 | 2.53e-89 | 277 |
| Msa0442090 | AT4G24260.1 | 38.491 | 517 | 271 | 17 | 1 | 482 | 84 | 588 | 2.31e-86 | 278 |
| Msa0442090 | AT1G65610.1 | 37.743 | 514 | 268 | 22 | 4 | 478 | 88 | 588 | 5.41e-84 | 271 |
| Msa0442090 | AT1G19940.3 | 42.033 | 364 | 196 | 8 | 25 | 377 | 48 | 407 | 2.01e-83 | 264 |
| Msa0442090 | AT4G24260.3 | 38.660 | 388 | 196 | 15 | 25 | 377 | 108 | 488 | 4.16e-52 | 184 |
| Msa0442090 | AT4G24260.2 | 40.252 | 318 | 153 | 12 | 25 | 310 | 108 | 420 | 2.82e-49 | 175 |
Find 130 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACAGTTCTCAAGGTATT+TGG | 0.188395 | 3_3:-11334552 | None:intergenic |
| ATGGCTCCAACCAATATATT+AGG | 0.202587 | 3_3:-11334844 | None:intergenic |
| TGCTGTTAAATACTACAATT+TGG | 0.250375 | 3_3:+11333907 | Msa0442090:CDS |
| CTACAATTTGGCCAAGTCTT+TGG | 0.251872 | 3_3:+11333919 | Msa0442090:CDS |
| CCAAGAAGTCATAAAGTAAA+AGG | 0.277546 | 3_3:+11331015 | None:intergenic |
| CCAGAATATGAGCAATAAAA+TGG | 0.291892 | 3_3:-11333494 | None:intergenic |
| TACAATTTGGCCAAGTCTTT+GGG | 0.295167 | 3_3:+11333920 | Msa0442090:CDS |
| TTTCAGGTAGACTATATATT+AGG | 0.296374 | 3_3:+11334661 | Msa0442090:intron |
| CTGGTTTGGACCTCCAACTA+TGG | 0.301617 | 3_3:-11334863 | None:intergenic |
| GCCAAAGCTTCTCTATAGTT+TGG | 0.312895 | 3_3:-11331133 | None:intergenic |
| GTTACTTCTTACATGCTTGC+TGG | 0.313758 | 3_3:+11331087 | Msa0442090:CDS |
| CAACATTTGTGATCAACATT+TGG | 0.314931 | 3_3:-11333239 | None:intergenic |
| TTATCCCAGCTGAAGATATC+AGG | 0.329473 | 3_3:-11333956 | None:intergenic |
| CTCCATTTGATTTGTTGGTC+AGG | 0.329552 | 3_3:-11331202 | None:intergenic |
| TGGATCTCCATTTGATTTGT+TGG | 0.349293 | 3_3:-11331207 | None:intergenic |
| TGAATCCTCTTGGGAAAATA+TGG | 0.350676 | 3_3:-11334724 | None:intergenic |
| TCATGGAGCACAATTGAATA+TGG | 0.352249 | 3_3:+11333101 | Msa0442090:CDS |
| GAATCAGAACCCTAATATAT+TGG | 0.355685 | 3_3:+11334834 | Msa0442090:CDS |
| CTCTATAGTTTGGTTTGCAT+TGG | 0.357894 | 3_3:-11331123 | None:intergenic |
| AATCTAACATTAATTGTTAC+CGG | 0.359003 | 3_3:-11334980 | None:intergenic |
| ATCAAATGGAGATCCAATTC+TGG | 0.361824 | 3_3:+11331214 | Msa0442090:CDS |
| TCCACTTAGAATGTCCTATA+TGG | 0.366931 | 3_3:+11334690 | Msa0442090:CDS |
| TACAACCTATTCCAAGTATA+TGG | 0.367719 | 3_3:+11334485 | Msa0442090:CDS |
| ATTATGCTCACTGGTTGTCT+TGG | 0.376869 | 3_3:-11331043 | None:intergenic |
| TAGGGTTCTGATTCATTGAA+TGG | 0.377070 | 3_3:-11334825 | None:intergenic |
| CATCAGGAAATCCGTCGTTC+TGG | 0.380884 | 3_3:-11334882 | None:intergenic |
| CTTTGTAGCTGCCATATACT+TGG | 0.384398 | 3_3:-11334496 | None:intergenic |
| GGAAATCCGTCGTTCTGGTT+TGG | 0.384940 | 3_3:-11334877 | None:intergenic |
| TACATCAATGGTGGGATTGT+TGG | 0.387929 | 3_3:+11334940 | Msa0442090:CDS |
| ACCATCGGACATGCCAGAAT+TGG | 0.391790 | 3_3:-11331227 | None:intergenic |
| GCTCTTGCTTCTTTCATTTG+TGG | 0.396038 | 3_3:-11333137 | None:intergenic |
| GAGGGAGCCTTCCTGACCTC+TGG | 0.398809 | 3_3:-11331180 | None:intergenic |
| TTCAGCAGCAACATCAGAAC+CGG | 0.401931 | 3_3:-11333321 | None:intergenic |
| TCTTCAGAGTAATAACATAA+AGG | 0.407884 | 3_3:+11335318 | Msa0442090:three_prime_UTR |
| TTTGGTAGACATCCCTTTGT+TGG | 0.410383 | 3_3:-11335069 | None:intergenic |
| TCCTCTGTGGTGAATCCTCT+TGG | 0.412922 | 3_3:-11334734 | None:intergenic |
| TTATGCTCACTGGTTGTCTT+GGG | 0.413093 | 3_3:-11331042 | None:intergenic |
| TTGGTAGACATCCCTTTGTT+GGG | 0.413690 | 3_3:-11335068 | None:intergenic |
| ACACCGACATAGAGTCTTCC+AGG | 0.415923 | 3_3:-11333209 | None:intergenic |
| CTATAGTCACCGCGATCATC+AGG | 0.416806 | 3_3:-11334898 | None:intergenic |
| CAGTTTGCTTTGCAGTATCA+AGG | 0.418073 | 3_3:+11333437 | Msa0442090:CDS |
| CCACCATTGATGTAAGTTGC+TGG | 0.419287 | 3_3:-11334931 | None:intergenic |
| TTGCTCATATTCTGGATTCA+AGG | 0.420522 | 3_3:+11333502 | Msa0442090:CDS |
| TGGCTCCAACCAATATATTA+GGG | 0.420525 | 3_3:-11334843 | None:intergenic |
| GGACCTTTAGCGTACTTTGC+CGG | 0.422505 | 3_3:+11334961 | Msa0442090:CDS |
| ACATACTGAAGATTGCTTGC+AGG | 0.422983 | 3_3:-11334441 | None:intergenic |
| CTAACAGTGTCCATATCTTC+TGG | 0.423308 | 3_3:-11333269 | None:intergenic |
| ACCAAACTATAGAGAAGCTT+TGG | 0.423724 | 3_3:+11331132 | Msa0442090:CDS |
| TTGGGAAAGACCAGAAGATA+TGG | 0.432588 | 3_3:+11333259 | Msa0442090:CDS |
| CAAATGTTGATCACAAATGT+TGG | 0.436805 | 3_3:+11333240 | Msa0442090:CDS |
| TGTAGTTGAAGAGGGTGAAT+TGG | 0.441166 | 3_3:-11334189 | None:intergenic |
| ATGTCCTATATGGTAGGTTA+TGG | 0.445656 | 3_3:+11334700 | Msa0442090:CDS |
| TCAGTTCATCCACAGACAAT+AGG | 0.447266 | 3_3:+11334775 | Msa0442090:CDS |
| CTCCTGACCAACAAATCAAA+TGG | 0.448231 | 3_3:+11331200 | Msa0442090:CDS |
| AGCTGCCATATACTTGGAAT+AGG | 0.451707 | 3_3:-11334490 | None:intergenic |
| ATATTGGTTGGAGCCATAGT+TGG | 0.454285 | 3_3:+11334850 | Msa0442090:CDS |
| AATTGAATATGGAAAGAGAA+TGG | 0.462216 | 3_3:+11333112 | Msa0442090:CDS |
| ATCAACCTGATATCTTCAGC+TGG | 0.462559 | 3_3:+11333951 | Msa0442090:CDS |
| AACAAAAGCTTAGAATAAGT+TGG | 0.464270 | 3_3:-11333392 | None:intergenic |
| AAATGTTGATCACAAATGTT+GGG | 0.467634 | 3_3:+11333241 | Msa0442090:CDS |
| TCTTCAGGATGAACTATTGT+GGG | 0.468517 | 3_3:+11333856 | Msa0442090:intron |
| GTGCACATGTCCTTCTCTCA+AGG | 0.474161 | 3_3:+11333990 | Msa0442090:CDS |
| TGGACCATAACCTACCATAT+AGG | 0.476059 | 3_3:-11334704 | None:intergenic |
| ATTGAATATGGAAAGAGAAT+GGG | 0.486477 | 3_3:+11333113 | Msa0442090:CDS |
| GAAGTTCTCATTATGCTCAC+TGG | 0.489573 | 3_3:-11331052 | None:intergenic |
| ATTGTTGTTGTGAATGCCAT+TGG | 0.494336 | 3_3:-11333074 | None:intergenic |
| AATAAAGACGAATGCAAAGA+TGG | 0.498098 | 3_3:-11335276 | None:intergenic |
| ATTTGATTTGTTGGTCAGGA+GGG | 0.500109 | 3_3:-11331198 | None:intergenic |
| ACAGGAGGCTATTATGATGC+AGG | 0.500795 | 3_3:+11333029 | Msa0442090:CDS |
| ATCTGTGGCGTGGCGAATTG+CGG | 0.500987 | 3_3:-11333159 | None:intergenic |
| CATTTGATTTGTTGGTCAGG+AGG | 0.504546 | 3_3:-11331199 | None:intergenic |
| CCTCTGTGGTGAATCCTCTT+GGG | 0.506991 | 3_3:-11334733 | None:intergenic |
| TCACAACAACAATGTTATCA+TGG | 0.509771 | 3_3:+11333084 | Msa0442090:CDS |
| CAGAACCCTAATATATTGGT+TGG | 0.511456 | 3_3:+11334838 | Msa0442090:CDS |
| TAGATTTGACTTTGATAGCA+AGG | 0.518793 | 3_3:+11334997 | Msa0442090:three_prime_UTR |
| ATCTTCAGGATGAACTATTG+TGG | 0.519125 | 3_3:+11333855 | Msa0442090:intron |
| ATCATCAGCTCCCAAAGACT+TGG | 0.531480 | 3_3:-11333930 | None:intergenic |
| GTAGTTGAAGAGGGTGAATT+GGG | 0.534837 | 3_3:-11334188 | None:intergenic |
| TACATCGGCAAGGCGACCAT+CGG | 0.538069 | 3_3:-11331242 | None:intergenic |
| AACTGCTGCTGCACTTGCTG+CGG | 0.539280 | 3_3:+11333343 | Msa0442090:CDS |
| ATAAGAACTTTGATCAGTAT+AGG | 0.541520 | 3_3:+11334132 | Msa0442090:CDS |
| TATGTATCTTCAAACAATCC+CGG | 0.544424 | 3_3:+11333302 | Msa0442090:CDS |
| TTGGTTGGAGCCATAGTTGG+AGG | 0.545842 | 3_3:+11334853 | Msa0442090:CDS |
| CTACAGAGAGCATTGCTGAA+TGG | 0.545991 | 3_3:+11334107 | Msa0442090:intron |
| TCTCATCTCTACCCAACAAA+GGG | 0.546034 | 3_3:+11335057 | Msa0442090:three_prime_UTR |
| CCACAGACAATAGGATGTGA+TGG | 0.547733 | 3_3:+11334784 | Msa0442090:CDS |
| GAACCAGCAACTTACATCAA+TGG | 0.548177 | 3_3:+11334928 | Msa0442090:CDS |
| CAGATGGTGGTGGACTATGA+AGG | 0.548948 | 3_3:+11335099 | Msa0442090:three_prime_UTR |
| AGCTGGGATAACAAATATGC+TGG | 0.549315 | 3_3:+11333968 | Msa0442090:CDS |
| GAGAACTGTTGCGAAAAGAC+AGG | 0.553255 | 3_3:+11334563 | Msa0442090:CDS |
| TCCAATTCTGGCATGTCCGA+TGG | 0.555287 | 3_3:+11331226 | Msa0442090:CDS |
| GGAAGACTCTATGTCGGTGT+TGG | 0.560843 | 3_3:+11333212 | Msa0442090:CDS |
| TTCAACTTACCCTTGAGAGA+AGG | 0.570746 | 3_3:-11334000 | None:intergenic |
| TTGCAGGTGGATTTGACAGG+AGG | 0.571495 | 3_3:+11333014 | Msa0442090:intron |
| TTACCGGCAAAGTACGCTAA+AGG | 0.575384 | 3_3:-11334964 | None:intergenic |
| GTAAAACATAGTAAAGATGT+TGG | 0.575502 | 3_3:-11335187 | None:intergenic |
| CTTAGAATGTCCTATATGGT+AGG | 0.578425 | 3_3:+11334694 | Msa0442090:CDS |
| TTTGTTGAGGACTTCACAGA+AGG | 0.583258 | 3_3:+11333409 | Msa0442090:CDS |
| ACCATATAGGACATTCTAAG+TGG | 0.589608 | 3_3:-11334691 | None:intergenic |
| GTCTCATCTCTACCCAACAA+AGG | 0.590435 | 3_3:+11335056 | Msa0442090:three_prime_UTR |
| AACTATTGTGGGGAGCTGCA+TGG | 0.591973 | 3_3:+11333867 | Msa0442090:CDS |
| TGCACATGTCCTTCTCTCAA+GGG | 0.598418 | 3_3:+11333991 | Msa0442090:CDS |
| TTCAAGGCCAGAGGTCAGGA+AGG | 0.600039 | 3_3:+11331173 | Msa0442090:CDS |
| CCATCACATCCTATTGTCTG+TGG | 0.600403 | 3_3:-11334784 | None:intergenic |
| GGCTCATACAGTGATTCACT+TGG | 0.605518 | 3_3:+11333458 | Msa0442090:CDS |
| TCAACCTGATATCTTCAGCT+GGG | 0.606032 | 3_3:+11333952 | Msa0442090:CDS |
| AGATGGTGGTGGACTATGAA+GGG | 0.613399 | 3_3:+11335100 | Msa0442090:three_prime_UTR |
| TGTATACTGTGTAGTTGAAG+AGG | 0.614209 | 3_3:-11334198 | None:intergenic |
| CCAGCAACTTACATCAATGG+TGG | 0.615251 | 3_3:+11334931 | Msa0442090:CDS |
| AAGCACACATTTAACTGTGG+TGG | 0.619659 | 3_3:+11334516 | Msa0442090:CDS |
| GTGTTGATGTTGCACACTTG+AGG | 0.620658 | 3_3:-11333187 | None:intergenic |
| AAGTGTGCAACATCAACACC+TGG | 0.627700 | 3_3:+11333191 | Msa0442090:CDS |
| TCAGCAGCAACATCAGAACC+GGG | 0.629928 | 3_3:-11333320 | None:intergenic |
| ACTCTGAAGAAAGATGAGAA+AGG | 0.630429 | 3_3:-11335305 | None:intergenic |
| CAGCAACTTACATCAATGGT+GGG | 0.637988 | 3_3:+11334932 | Msa0442090:CDS |
| CTTCAGGATGAACTATTGTG+GGG | 0.648937 | 3_3:+11333857 | Msa0442090:intron |
| GTATACTGTGTAGTTGAAGA+GGG | 0.651354 | 3_3:-11334197 | None:intergenic |
| TGAGGAGATAATCTGTGGCG+TGG | 0.651976 | 3_3:-11333169 | None:intergenic |
| TGGAGTATATTACATCGGCA+AGG | 0.663925 | 3_3:-11331252 | None:intergenic |
| CAGACAATAGGATGTGATGG+AGG | 0.672550 | 3_3:+11334787 | Msa0442090:CDS |
| ACACCTGGAAGACTCTATGT+CGG | 0.686227 | 3_3:+11333206 | Msa0442090:CDS |
| ACACTTGAGGAGATAATCTG+TGG | 0.686648 | 3_3:-11333174 | None:intergenic |
| CCCAAGAGGATTCACCACAG+AGG | 0.688585 | 3_3:+11334733 | Msa0442090:CDS |
| TGATGCATTAATGCGAGCCG+CGG | 0.689909 | 3_3:+11335368 | Msa0442090:three_prime_UTR |
| TCAACTACACAGTATACACA+AGG | 0.701067 | 3_3:+11334203 | Msa0442090:CDS |
| TGTGGATGAACTGATAGTGA+AGG | 0.707912 | 3_3:-11334766 | None:intergenic |
| GACGGATTTCCTGATGATCG+CGG | 0.711969 | 3_3:+11334889 | Msa0442090:CDS |
| GGAGGTCCAAACCAGAACGA+CGG | 0.712912 | 3_3:+11334871 | Msa0442090:CDS |
| ACAAAGCACACATTTAACTG+TGG | 0.729394 | 3_3:+11334513 | Msa0442090:CDS |
| AAGGCAATGAAGATCCTCTG+TGG | 0.790898 | 3_3:-11334747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAACATTATAATTT+GGG | - | chr3_3:11331543-11331562 | None:intergenic | 10.0% |
| !! | AAATGAAAAACATTATAATT+TGG | - | chr3_3:11331544-11331563 | None:intergenic | 10.0% |
| !! | CAAAAAAATAAAAGCAAAAA+TGG | - | chr3_3:11331275-11331294 | None:intergenic | 15.0% |
| !! | AATATAGCAAATATAAGATA+GGG | - | chr3_3:11331923-11331942 | None:intergenic | 15.0% |
| !! | AAATATAGCAAATATAAGAT+AGG | - | chr3_3:11331924-11331943 | None:intergenic | 15.0% |
| !!! | TATCTTATATTTGCTATATT+TGG | + | chr3_3:11331923-11331942 | Msa0442090:intron | 15.0% |
| !!! | ATATGTTTGAAATTTTTCAA+TGG | + | chr3_3:11332002-11332021 | Msa0442090:intron | 15.0% |
| !!! | TGTTTTTTTAATCACTTAAA+TGG | + | chr3_3:11332166-11332185 | Msa0442090:intron | 15.0% |
| !!! | TATTTCCTTATTTTAACTTT+TGG | + | chr3_3:11332201-11332220 | Msa0442090:intron | 15.0% |
| !! | ATAAACCAAAAGTTAAAATA+AGG | - | chr3_3:11332209-11332228 | None:intergenic | 15.0% |
| !! | AGTTACTTGTATTATAATAA+GGG | + | chr3_3:11332251-11332270 | Msa0442090:intron | 15.0% |
| !!! | AGAAATTTATTTTTTGTTCA+AGG | - | chr3_3:11332506-11332525 | None:intergenic | 15.0% |
| !! | AAAAAACTGTATGATAAATA+TGG | + | chr3_3:11332545-11332564 | Msa0442090:intron | 15.0% |
| !!! | TATAGTTAAATATCTAGTTT+TGG | + | chr3_3:11333591-11333610 | Msa0442090:intron | 15.0% |
| !!! | ATAAAATCAATTTTAAACAG+AGG | + | chr3_3:11333726-11333745 | Msa0442090:intron | 15.0% |
| !!! | TAAAATCAATTTTAAACAGA+GGG | + | chr3_3:11333727-11333746 | Msa0442090:intron | 15.0% |
| !! | ACTATAAATATAATAGTTGA+TGG | - | chr3_3:11334273-11334292 | None:intergenic | 15.0% |
| !! | ACATAAATTTCAAATCAATA+TGG | + | chr3_3:11334343-11334362 | Msa0442090:intron | 15.0% |
| !!! | AAAATTTGTTGTAAAATTTC+AGG | + | chr3_3:11334645-11334664 | Msa0442090:intron | 15.0% |
| !!! | AAATCCTTATTGTTTTTTCA+AGG | + | chr3_3:11331157-11331176 | Msa0442090:CDS | 20.0% |
| !! | AAAAATGGAGTATATTACAT+CGG | - | chr3_3:11331260-11331279 | None:intergenic | 20.0% |
| !! | AAAAACATTATAATTTGGGT+TGG | - | chr3_3:11331539-11331558 | None:intergenic | 20.0% |
| !! | ATATTATTTGTGTTCTACTA+CGG | + | chr3_3:11331577-11331596 | Msa0442090:intron | 20.0% |
| !!! | AAACAACTTCTTTGTTTTTA+TGG | + | chr3_3:11331639-11331658 | Msa0442090:intron | 20.0% |
| !!! | AACAACTTCTTTGTTTTTAT+GGG | + | chr3_3:11331640-11331659 | Msa0442090:intron | 20.0% |
| !!! | CTCATACAATTTTGTTTAAA+GGG | - | chr3_3:11331894-11331913 | None:intergenic | 20.0% |
| !! | AAATTTCAAACATATTACGT+TGG | - | chr3_3:11331997-11332016 | None:intergenic | 20.0% |
| !!! | TCTAATTCATGTTTCTATAT+AGG | + | chr3_3:11332089-11332108 | Msa0442090:intron | 20.0% |
| !!! | CTAATTCATGTTTCTATATA+GGG | + | chr3_3:11332090-11332109 | Msa0442090:intron | 20.0% |
| !! | TGATTAAAAAAACAAAGACT+AGG | - | chr3_3:11332160-11332179 | None:intergenic | 20.0% |
| !! | CAGTTACTTGTATTATAATA+AGG | + | chr3_3:11332250-11332269 | Msa0442090:intron | 20.0% |
| !! | TTTATTCTGTTCTATACTAT+TGG | - | chr3_3:11332344-11332363 | None:intergenic | 20.0% |
| !! | AAATAAAAAAGTTAGAGTTC+TGG | + | chr3_3:11332374-11332393 | Msa0442090:intron | 20.0% |
| !!! | TTTATTTTTTGTTCAAGGAT+TGG | - | chr3_3:11332501-11332520 | None:intergenic | 20.0% |
| !! | AAAGTTTAGACAAAACAAAT+TGG | - | chr3_3:11334048-11334067 | None:intergenic | 20.0% |
| !!! | AACAAATTTTATCAACAAAG+AGG | - | chr3_3:11334635-11334654 | None:intergenic | 20.0% |
| !! | AATCTAACATTAATTGTTAC+CGG | - | chr3_3:11334983-11335002 | None:intergenic | 20.0% |
| !!! | TATTTTAGAGTATCTGAATT+TGG | - | chr3_3:11335344-11335363 | None:intergenic | 20.0% |
| !! | AAAAACAAAGAAGTTGTTTC+CGG | - | chr3_3:11331638-11331657 | None:intergenic | 25.0% |
| !!! | ACAACTTCTTTGTTTTTATG+GGG | + | chr3_3:11331641-11331660 | Msa0442090:intron | 25.0% |
| !!! | TGATCTTACTTTTCAATCAT+CGG | + | chr3_3:11331833-11331852 | Msa0442090:intron | 25.0% |
| !!! | CCTCATACAATTTTGTTTAA+AGG | - | chr3_3:11331895-11331914 | None:intergenic | 25.0% |
| ! | CCTTTAAACAAAATTGTATG+AGG | + | chr3_3:11331892-11331911 | Msa0442090:intron | 25.0% |
| ! | AGTAAGTTCAATGAATTCTT+AGG | - | chr3_3:11332457-11332476 | None:intergenic | 25.0% |
| !! | CAAAATTATTGATTGAAGCT+AGG | - | chr3_3:11332578-11332597 | None:intergenic | 25.0% |
| !! | ATCAAGTTGTTTATCCAAAT+CGG | - | chr3_3:11332677-11332696 | None:intergenic | 25.0% |
| ! | ATGCAAGTGAAATTATAGAA+TGG | - | chr3_3:11332952-11332971 | None:intergenic | 25.0% |
| !! | TGTGAAATTCAATTTTCCAA+TGG | + | chr3_3:11333058-11333077 | Msa0442090:CDS | 25.0% |
| ! | AATTGAATATGGAAAGAGAA+TGG | + | chr3_3:11333112-11333131 | Msa0442090:CDS | 25.0% |
| ! | ATTGAATATGGAAAGAGAAT+GGG | + | chr3_3:11333113-11333132 | Msa0442090:CDS | 25.0% |
| ! | AAATGTTGATCACAAATGTT+GGG | + | chr3_3:11333241-11333260 | Msa0442090:CDS | 25.0% |
| ! | AACAAAAGCTTAGAATAAGT+TGG | - | chr3_3:11333395-11333414 | None:intergenic | 25.0% |
| !!! | TTTTGGTAGTATCACTATTA+GGG | + | chr3_3:11333608-11333627 | Msa0442090:intron | 25.0% |
| ! | TCTCTCTAATAGTAAGAAAT+AGG | - | chr3_3:11333793-11333812 | None:intergenic | 25.0% |
| ! | AATAGGCATTATTTATCTTC+AGG | + | chr3_3:11333841-11333860 | Msa0442090:intron | 25.0% |
| ! | TGCTGTTAAATACTACAATT+TGG | + | chr3_3:11333907-11333926 | Msa0442090:CDS | 25.0% |
| ! | ATAAGAACTTTGATCAGTAT+AGG | + | chr3_3:11334132-11334151 | Msa0442090:CDS | 25.0% |
| ! | ATGAAATCATTCTCTATTCT+TGG | - | chr3_3:11334309-11334328 | None:intergenic | 25.0% |
| !! | TGGCTTATAGAGTATTATAA+AGG | + | chr3_3:11334363-11334382 | Msa0442090:intron | 25.0% |
| !! | GGCTTATAGAGTATTATAAA+GGG | + | chr3_3:11334364-11334383 | Msa0442090:intron | 25.0% |
| !! | TTTCAGGTAGACTATATATT+AGG | + | chr3_3:11334661-11334680 | Msa0442090:intron | 25.0% |
| ! | TGATTCATTGAATGGAAAAA+CGG | - | chr3_3:11334820-11334839 | None:intergenic | 25.0% |
| ! | GTAAAACATAGTAAAGATGT+TGG | - | chr3_3:11335190-11335209 | None:intergenic | 25.0% |
| !!! | AGTGATTGCATAAGTTTTTT+GGG | - | chr3_3:11335234-11335253 | None:intergenic | 25.0% |
| !!! | AAGTGATTGCATAAGTTTTT+TGG | - | chr3_3:11335235-11335254 | None:intergenic | 25.0% |
| ! | TCTTCAGAGTAATAACATAA+AGG | + | chr3_3:11335318-11335337 | Msa0442090:three_prime_UTR | 25.0% |
| !!! | CATACAAACCTAGTTTTGTT+GGG | + | chr3_3:11331506-11331525 | Msa0442090:intron | 30.0% |
| !!! | ATACAAACCTAGTTTTGTTG+GGG | + | chr3_3:11331507-11331526 | Msa0442090:intron | 30.0% |
| !!! | CAACTTCTTTGTTTTTATGG+GGG | + | chr3_3:11331642-11331661 | Msa0442090:intron | 30.0% |
| ! | TTTAAAACATTGTAGCCATG+TGG | - | chr3_3:11331699-11331718 | None:intergenic | 30.0% |
| TGAAAAGTAAGATCATCTCT+AGG | - | chr3_3:11331828-11331847 | None:intergenic | 30.0% | |
| AATATTGTTTGATGCAAGCT+TGG | + | chr3_3:11331868-11331887 | Msa0442090:intron | 30.0% | |
| ! | TCAATGAATTCTTAGGCTTT+TGG | - | chr3_3:11332450-11332469 | None:intergenic | 30.0% |
| TACAATTTATTCGTCCGATT+TGG | + | chr3_3:11332660-11332679 | Msa0442090:intron | 30.0% | |
| AAATTATAGAATGGCGTGTT+TGG | - | chr3_3:11332943-11332962 | None:intergenic | 30.0% | |
| ATTTCACTTGCATTATCCAA+TGG | + | chr3_3:11332959-11332978 | Msa0442090:intron | 30.0% | |
| !! | ATACACAAACATTGTTTTGC+AGG | + | chr3_3:11332998-11333017 | Msa0442090:intron | 30.0% |
| TCACAACAACAATGTTATCA+TGG | + | chr3_3:11333084-11333103 | Msa0442090:CDS | 30.0% | |
| CAACATTTGTGATCAACATT+TGG | - | chr3_3:11333242-11333261 | None:intergenic | 30.0% | |
| CAAATGTTGATCACAAATGT+TGG | + | chr3_3:11333240-11333259 | Msa0442090:CDS | 30.0% | |
| TATGTATCTTCAAACAATCC+CGG | + | chr3_3:11333302-11333321 | Msa0442090:CDS | 30.0% | |
| ! | CTTATTCTAAGCTTTTGTTG+AGG | + | chr3_3:11333396-11333415 | Msa0442090:CDS | 30.0% |
| CCAGAATATGAGCAATAAAA+TGG | - | chr3_3:11333497-11333516 | None:intergenic | 30.0% | |
| ! | CCATTTTATTGCTCATATTC+TGG | + | chr3_3:11333494-11333513 | Msa0442090:CDS | 30.0% |
| !! | GTTTTGGTAGTATCACTATT+AGG | + | chr3_3:11333607-11333626 | Msa0442090:intron | 30.0% |
| ! | TTTGGTAGTATCACTATTAG+GGG | + | chr3_3:11333609-11333628 | Msa0442090:intron | 30.0% |
| ! | TTGGTTGTTAAGTTTGAGAT+TGG | + | chr3_3:11333683-11333702 | Msa0442090:intron | 30.0% |
| TCTACTTGTATCGTTCTAAT+AGG | + | chr3_3:11333824-11333843 | Msa0442090:intron | 30.0% | |
| TATTGCTTGAATTAATGTGC+AGG | + | chr3_3:11334399-11334418 | Msa0442090:intron | 30.0% | |
| ATTGCTTGAATTAATGTGCA+GGG | + | chr3_3:11334400-11334419 | Msa0442090:intron | 30.0% | |
| TACAACCTATTCCAAGTATA+TGG | + | chr3_3:11334485-11334504 | Msa0442090:CDS | 30.0% | |
| GAATCAGAACCCTAATATAT+TGG | + | chr3_3:11334834-11334853 | Msa0442090:CDS | 30.0% | |
| ! | TAGATTTGACTTTGATAGCA+AGG | + | chr3_3:11334997-11335016 | Msa0442090:three_prime_UTR | 30.0% |
| TCTACCAAATCAAAAACAGA+TGG | + | chr3_3:11335083-11335102 | Msa0442090:three_prime_UTR | 30.0% | |
| ! | TTACTATGTTTTACGCTACA+TGG | + | chr3_3:11335196-11335215 | Msa0442090:three_prime_UTR | 30.0% |
| AATAAAGACGAATGCAAAGA+TGG | - | chr3_3:11335279-11335298 | None:intergenic | 30.0% | |
| !! | CTCTATAGTTTGGTTTGCAT+TGG | - | chr3_3:11331126-11331145 | None:intergenic | 35.0% |
| ACCAAACTATAGAGAAGCTT+TGG | + | chr3_3:11331132-11331151 | Msa0442090:CDS | 35.0% | |
| !! | CTGGCCTTGAAAAAACAATA+AGG | - | chr3_3:11331164-11331183 | None:intergenic | 35.0% |
| !!! | TATTGTTTTTTCAAGGCCAG+AGG | + | chr3_3:11331164-11331183 | Msa0442090:CDS | 35.0% |
| !! | ATTTGATTTGTTGGTCAGGA+GGG | - | chr3_3:11331201-11331220 | None:intergenic | 35.0% |
| !! | TGGATCTCCATTTGATTTGT+TGG | - | chr3_3:11331210-11331229 | None:intergenic | 35.0% |
| ATCAAATGGAGATCCAATTC+TGG | + | chr3_3:11331214-11331233 | Msa0442090:CDS | 35.0% | |
| AAAACTAGGTTTGTATGGTG+AGG | - | chr3_3:11331503-11331522 | None:intergenic | 35.0% | |
| CCAACAAAACTAGGTTTGTA+TGG | - | chr3_3:11331508-11331527 | None:intergenic | 35.0% | |
| !!! | CCATACAAACCTAGTTTTGT+TGG | + | chr3_3:11331505-11331524 | Msa0442090:intron | 35.0% |
| ! | GAAGTTACAAGTTCTAATGC+CGG | + | chr3_3:11331616-11331635 | Msa0442090:intron | 35.0% |
| ATCAAGCAAACCAGTAAACA+AGG | - | chr3_3:11331744-11331763 | None:intergenic | 35.0% | |
| !! | TTTACTGGTTTGCTTGATCT+CGG | + | chr3_3:11331746-11331765 | Msa0442090:intron | 35.0% |
| ATCTCGGTTATATTACTGTC+TGG | + | chr3_3:11331762-11331781 | Msa0442090:intron | 35.0% | |
| AAGTAATAACAGATCCAGCA+AGG | - | chr3_3:11332058-11332077 | None:intergenic | 35.0% | |
| AAACAAAGACTAGGCATCAA+AGG | - | chr3_3:11332151-11332170 | None:intergenic | 35.0% | |
| ! | AATTCTTAGGCTTTTGGTGA+AGG | - | chr3_3:11332444-11332463 | None:intergenic | 35.0% |
| AAGAAGCTAAAAACAGCTCA+TGG | + | chr3_3:11332835-11332854 | Msa0442090:intron | 35.0% | |
| ! | ATTGTTGTTGTGAATGCCAT+TGG | - | chr3_3:11333077-11333096 | None:intergenic | 35.0% |
| TCATGGAGCACAATTGAATA+TGG | + | chr3_3:11333101-11333120 | Msa0442090:CDS | 35.0% | |
| TTGCTCATATTCTGGATTCA+AGG | + | chr3_3:11333502-11333521 | Msa0442090:CDS | 35.0% | |
| ! | TTACACGTAGCAGACAATTT+TGG | + | chr3_3:11333664-11333683 | Msa0442090:intron | 35.0% |
| ! | CTATGTGATACAGTTTTTCG+AGG | + | chr3_3:11333764-11333783 | Msa0442090:intron | 35.0% |
| ATCTTCAGGATGAACTATTG+TGG | + | chr3_3:11333855-11333874 | Msa0442090:intron | 35.0% | |
| TCTTCAGGATGAACTATTGT+GGG | + | chr3_3:11333856-11333875 | Msa0442090:intron | 35.0% | |
| TACAATTTGGCCAAGTCTTT+GGG | + | chr3_3:11333920-11333939 | Msa0442090:CDS | 35.0% | |
| GTATACTGTGTAGTTGAAGA+GGG | - | chr3_3:11334200-11334219 | None:intergenic | 35.0% | |
| TGTATACTGTGTAGTTGAAG+AGG | - | chr3_3:11334201-11334220 | None:intergenic | 35.0% | |
| TCAACTACACAGTATACACA+AGG | + | chr3_3:11334203-11334222 | Msa0442090:CDS | 35.0% | |
| TTGCTTGAATTAATGTGCAG+GGG | + | chr3_3:11334401-11334420 | Msa0442090:intron | 35.0% | |
| ACAAAGCACACATTTAACTG+TGG | + | chr3_3:11334513-11334532 | Msa0442090:CDS | 35.0% | |
| TCCACTTAGAATGTCCTATA+TGG | + | chr3_3:11334690-11334709 | Msa0442090:CDS | 35.0% | |
| ACCATATAGGACATTCTAAG+TGG | - | chr3_3:11334694-11334713 | None:intergenic | 35.0% | |
| CTTAGAATGTCCTATATGGT+AGG | + | chr3_3:11334694-11334713 | Msa0442090:CDS | 35.0% | |
| ATGTCCTATATGGTAGGTTA+TGG | + | chr3_3:11334700-11334719 | Msa0442090:CDS | 35.0% | |
| TGAATCCTCTTGGGAAAATA+TGG | - | chr3_3:11334727-11334746 | None:intergenic | 35.0% | |
| ! | TAGGGTTCTGATTCATTGAA+TGG | - | chr3_3:11334828-11334847 | None:intergenic | 35.0% |
| CAGAACCCTAATATATTGGT+TGG | + | chr3_3:11334838-11334857 | Msa0442090:CDS | 35.0% | |
| TGGCTCCAACCAATATATTA+GGG | - | chr3_3:11334846-11334865 | None:intergenic | 35.0% | |
| ATGGCTCCAACCAATATATT+AGG | - | chr3_3:11334847-11334866 | None:intergenic | 35.0% | |
| ACCAAATCAAAAACAGATGG+TGG | + | chr3_3:11335086-11335105 | Msa0442090:three_prime_UTR | 35.0% | |
| !!! | ACCACCATCTGTTTTTGATT+TGG | - | chr3_3:11335090-11335109 | None:intergenic | 35.0% |
| ! | AAATCAAAAACAGATGGTGG+TGG | + | chr3_3:11335089-11335108 | Msa0442090:three_prime_UTR | 35.0% |
| ! | ACTCTGAAGAAAGATGAGAA+AGG | - | chr3_3:11335308-11335327 | None:intergenic | 35.0% |
| ! | TTATGCTCACTGGTTGTCTT+GGG | - | chr3_3:11331045-11331064 | None:intergenic | 40.0% |
| ! | ATTATGCTCACTGGTTGTCT+TGG | - | chr3_3:11331046-11331065 | None:intergenic | 40.0% |
| GAAGTTCTCATTATGCTCAC+TGG | - | chr3_3:11331055-11331074 | None:intergenic | 40.0% | |
| GTTACTTCTTACATGCTTGC+TGG | + | chr3_3:11331087-11331106 | Msa0442090:CDS | 40.0% | |
| GCCAAAGCTTCTCTATAGTT+TGG | - | chr3_3:11331136-11331155 | None:intergenic | 40.0% | |
| !! | CATTTGATTTGTTGGTCAGG+AGG | - | chr3_3:11331202-11331221 | None:intergenic | 40.0% |
| CTCCTGACCAACAAATCAAA+TGG | + | chr3_3:11331200-11331219 | Msa0442090:CDS | 40.0% | |
| !! | CTCCATTTGATTTGTTGGTC+AGG | - | chr3_3:11331205-11331224 | None:intergenic | 40.0% |
| TGGAGTATATTACATCGGCA+AGG | - | chr3_3:11331255-11331274 | None:intergenic | 40.0% | |
| ATGTCGGTGATATATAGGTG+AGG | - | chr3_3:11331357-11331376 | None:intergenic | 40.0% | |
| CACACATGTCGGTGATATAT+AGG | - | chr3_3:11331362-11331381 | None:intergenic | 40.0% | |
| CTATATATCACCGACATGTG+TGG | + | chr3_3:11331360-11331379 | Msa0442090:intron | 40.0% | |
| TGGTGTCCATGTTTGTGTTA+GGG | + | chr3_3:11331467-11331486 | Msa0442090:intron | 40.0% | |
| GCTAAACCCTAACACAAACA+TGG | - | chr3_3:11331476-11331495 | None:intergenic | 40.0% | |
| GATTCAACCCCAACAAAACT+AGG | - | chr3_3:11331517-11331536 | None:intergenic | 40.0% | |
| AGTCTGAAGAGGATAGATGT+AGG | - | chr3_3:11331676-11331695 | None:intergenic | 40.0% | |
| !! | AAACAAGGCACTGGTCATTT+CGG | - | chr3_3:11331729-11331748 | None:intergenic | 40.0% |
| TGGTTGAACTAGTTCAACTG+TGG | + | chr3_3:11331782-11331801 | Msa0442090:intron | 40.0% | |
| GGTACTTGGTATGTTTGGTT+TGG | - | chr3_3:11332032-11332051 | None:intergenic | 40.0% | |
| ! | GGTAAGGTACTTGGTATGTT+TGG | - | chr3_3:11332037-11332056 | None:intergenic | 40.0% |
| ATAACAGATCCAGCAAGGTA+AGG | - | chr3_3:11332053-11332072 | None:intergenic | 40.0% | |
| AGTCTGTTTGAGAGAGCTTA+TGG | - | chr3_3:11332879-11332898 | None:intergenic | 40.0% | |
| GTGTTAGCACTTTGTTCCAT+TGG | - | chr3_3:11332978-11332997 | None:intergenic | 40.0% | |
| !! | CACAAACATTGTTTTGCAGG+TGG | + | chr3_3:11333001-11333020 | Msa0442090:intron | 40.0% |
| GCTCTTGCTTCTTTCATTTG+TGG | - | chr3_3:11333140-11333159 | None:intergenic | 40.0% | |
| ACACTTGAGGAGATAATCTG+TGG | - | chr3_3:11333177-11333196 | None:intergenic | 40.0% | |
| TTGGGAAAGACCAGAAGATA+TGG | + | chr3_3:11333259-11333278 | Msa0442090:CDS | 40.0% | |
| CTAACAGTGTCCATATCTTC+TGG | - | chr3_3:11333272-11333291 | None:intergenic | 40.0% | |
| TTTGTTGAGGACTTCACAGA+AGG | + | chr3_3:11333409-11333428 | Msa0442090:CDS | 40.0% | |
| ! | CAGTTTGCTTTGCAGTATCA+AGG | + | chr3_3:11333437-11333456 | Msa0442090:CDS | 40.0% |
| CCAATACTCGGATTCTTACT+CGG | + | chr3_3:11333564-11333583 | Msa0442090:intron | 40.0% | |
| TAGTATCACTATTAGGGGTC+TGG | + | chr3_3:11333614-11333633 | Msa0442090:intron | 40.0% | |
| CTTCAGGATGAACTATTGTG+GGG | + | chr3_3:11333857-11333876 | Msa0442090:intron | 40.0% | |
| CTACAATTTGGCCAAGTCTT+TGG | + | chr3_3:11333919-11333938 | Msa0442090:CDS | 40.0% | |
| ATCAACCTGATATCTTCAGC+TGG | + | chr3_3:11333951-11333970 | Msa0442090:CDS | 40.0% | |
| TCAACCTGATATCTTCAGCT+GGG | + | chr3_3:11333952-11333971 | Msa0442090:CDS | 40.0% | |
| TTATCCCAGCTGAAGATATC+AGG | - | chr3_3:11333959-11333978 | None:intergenic | 40.0% | |
| AGCTGGGATAACAAATATGC+TGG | + | chr3_3:11333968-11333987 | Msa0442090:CDS | 40.0% | |
| TTCAACTTACCCTTGAGAGA+AGG | - | chr3_3:11334003-11334022 | None:intergenic | 40.0% | |
| GTAGTTGAAGAGGGTGAATT+GGG | - | chr3_3:11334191-11334210 | None:intergenic | 40.0% | |
| TGTAGTTGAAGAGGGTGAAT+TGG | - | chr3_3:11334192-11334211 | None:intergenic | 40.0% | |
| TGCTTGAATTAATGTGCAGG+GGG | + | chr3_3:11334402-11334421 | Msa0442090:intron | 40.0% | |
| ACATACTGAAGATTGCTTGC+AGG | - | chr3_3:11334444-11334463 | None:intergenic | 40.0% | |
| AGCTGCCATATACTTGGAAT+AGG | - | chr3_3:11334493-11334512 | None:intergenic | 40.0% | |
| CTTTGTAGCTGCCATATACT+TGG | - | chr3_3:11334499-11334518 | None:intergenic | 40.0% | |
| AAGCACACATTTAACTGTGG+TGG | + | chr3_3:11334516-11334535 | Msa0442090:CDS | 40.0% | |
| ! | GCAACAGTTCTCAAGGTATT+TGG | - | chr3_3:11334555-11334574 | None:intergenic | 40.0% |
| ! | TCTTTTCGCAACAGTTCTCA+AGG | - | chr3_3:11334562-11334581 | None:intergenic | 40.0% |
| TGGACCATAACCTACCATAT+AGG | - | chr3_3:11334707-11334726 | None:intergenic | 40.0% | |
| ! | ATGGTCCATATTTTCCCAAG+AGG | + | chr3_3:11334719-11334738 | Msa0442090:CDS | 40.0% |
| ! | TGTGGATGAACTGATAGTGA+AGG | - | chr3_3:11334769-11334788 | None:intergenic | 40.0% |
| TCAGTTCATCCACAGACAAT+AGG | + | chr3_3:11334775-11334794 | Msa0442090:CDS | 40.0% | |
| ! | ATATTGGTTGGAGCCATAGT+TGG | + | chr3_3:11334850-11334869 | Msa0442090:CDS | 40.0% |
| GAACCAGCAACTTACATCAA+TGG | + | chr3_3:11334928-11334947 | Msa0442090:CDS | 40.0% | |
| CAGCAACTTACATCAATGGT+GGG | + | chr3_3:11334932-11334951 | Msa0442090:CDS | 40.0% | |
| ! | TACATCAATGGTGGGATTGT+TGG | + | chr3_3:11334940-11334959 | Msa0442090:CDS | 40.0% |
| TCTCATCTCTACCCAACAAA+GGG | + | chr3_3:11335057-11335076 | Msa0442090:three_prime_UTR | 40.0% | |
| TTGGTAGACATCCCTTTGTT+GGG | - | chr3_3:11335071-11335090 | None:intergenic | 40.0% | |
| TTTGGTAGACATCCCTTTGT+TGG | - | chr3_3:11335072-11335091 | None:intergenic | 40.0% | |
| !!! | TTTTTTCAAGGCCAGAGGTC+AGG | + | chr3_3:11331169-11331188 | Msa0442090:CDS | 45.0% |
| !! | TATCACCAGTGTCGACGTAT+TGG | + | chr3_3:11331427-11331446 | Msa0442090:intron | 45.0% |
| CTGGTGTCCATGTTTGTGTT+AGG | + | chr3_3:11331466-11331485 | Msa0442090:intron | 45.0% | |
| ! | CTACGGTTGTTGTTGTGACA+TGG | + | chr3_3:11331594-11331613 | Msa0442090:intron | 45.0% |
| TATCCTCTTCAGACTCCACA+TGG | + | chr3_3:11331681-11331700 | Msa0442090:intron | 45.0% | |
| !! | ATGACCAGTGCCTTGTTTAC+TGG | + | chr3_3:11331731-11331750 | Msa0442090:intron | 45.0% |
| CAAACCAGTAAACAAGGCAC+TGG | - | chr3_3:11331738-11331757 | None:intergenic | 45.0% | |
| TACCAAGTACCTTACCTTGC+TGG | + | chr3_3:11332041-11332060 | Msa0442090:intron | 45.0% | |
| ! | ATCCAGCAAGGTAAGGTACT+TGG | - | chr3_3:11332046-11332065 | None:intergenic | 45.0% |
| !! | GTTTTGCAGGTGGATTTGAC+AGG | + | chr3_3:11333011-11333030 | Msa0442090:intron | 45.0% |
| ACAGGAGGCTATTATGATGC+AGG | + | chr3_3:11333029-11333048 | Msa0442090:CDS | 45.0% | |
| ! | GTGTTGATGTTGCACACTTG+AGG | - | chr3_3:11333190-11333209 | None:intergenic | 45.0% |
| AAGTGTGCAACATCAACACC+TGG | + | chr3_3:11333191-11333210 | Msa0442090:CDS | 45.0% | |
| ACACCTGGAAGACTCTATGT+CGG | + | chr3_3:11333206-11333225 | Msa0442090:CDS | 45.0% | |
| TTCAGCAGCAACATCAGAAC+CGG | - | chr3_3:11333324-11333343 | None:intergenic | 45.0% | |
| GGCTCATACAGTGATTCACT+TGG | + | chr3_3:11333458-11333477 | Msa0442090:CDS | 45.0% | |
| ! | CCTAGAGCATCTCCAATACT+CGG | + | chr3_3:11333552-11333571 | Msa0442090:intron | 45.0% |
| CCGAGTAAGAATCCGAGTAT+TGG | - | chr3_3:11333567-11333586 | None:intergenic | 45.0% | |
| GGGTCTGGATTCTCTAATGT+AGG | + | chr3_3:11333629-11333648 | Msa0442090:intron | 45.0% | |
| ATCATCAGCTCCCAAAGACT+TGG | - | chr3_3:11333933-11333952 | None:intergenic | 45.0% | |
| TGCACATGTCCTTCTCTCAA+GGG | + | chr3_3:11333991-11334010 | Msa0442090:CDS | 45.0% | |
| !! | CTACAGAGAGCATTGCTGAA+TGG | + | chr3_3:11334107-11334126 | Msa0442090:intron | 45.0% |
| GAGAACTGTTGCGAAAAGAC+AGG | + | chr3_3:11334563-11334582 | Msa0442090:CDS | 45.0% | |
| AAGGCAATGAAGATCCTCTG+TGG | - | chr3_3:11334750-11334769 | None:intergenic | 45.0% | |
| CCATCACATCCTATTGTCTG+TGG | - | chr3_3:11334787-11334806 | None:intergenic | 45.0% | |
| CCACAGACAATAGGATGTGA+TGG | + | chr3_3:11334784-11334803 | Msa0442090:CDS | 45.0% | |
| CAGACAATAGGATGTGATGG+AGG | + | chr3_3:11334787-11334806 | Msa0442090:CDS | 45.0% | |
| CCACCATTGATGTAAGTTGC+TGG | - | chr3_3:11334934-11334953 | None:intergenic | 45.0% | |
| CCAGCAACTTACATCAATGG+TGG | + | chr3_3:11334931-11334950 | Msa0442090:CDS | 45.0% | |
| TTACCGGCAAAGTACGCTAA+AGG | - | chr3_3:11334967-11334986 | None:intergenic | 45.0% | |
| GTCTCATCTCTACCCAACAA+AGG | + | chr3_3:11335056-11335075 | Msa0442090:three_prime_UTR | 45.0% | |
| !! | AGATGGTGGTGGACTATGAA+GGG | + | chr3_3:11335100-11335119 | Msa0442090:three_prime_UTR | 45.0% |
| !!! | ATTTTTATATGATATTTTTT+TGG | - | chr3_3:11332627-11332646 | None:intergenic | 5.0% |
| TCCAATTCTGGCATGTCCGA+TGG | + | chr3_3:11331226-11331245 | Msa0442090:CDS | 50.0% | |
| ACCATCGGACATGCCAGAAT+TGG | - | chr3_3:11331230-11331249 | None:intergenic | 50.0% | |
| ACACACCAATACGTCGACAC+TGG | - | chr3_3:11331435-11331454 | None:intergenic | 50.0% | |
| ! | TGGTGTGTCACTGTCGTATC+TGG | + | chr3_3:11331447-11331466 | Msa0442090:intron | 50.0% |
| TAGCCATGTGGAGTCTGAAG+AGG | - | chr3_3:11331687-11331706 | None:intergenic | 50.0% | |
| ! | TTGCAGGTGGATTTGACAGG+AGG | + | chr3_3:11333014-11333033 | Msa0442090:intron | 50.0% |
| TGAGGAGATAATCTGTGGCG+TGG | - | chr3_3:11333172-11333191 | None:intergenic | 50.0% | |
| ACACCGACATAGAGTCTTCC+AGG | - | chr3_3:11333212-11333231 | None:intergenic | 50.0% | |
| GGAAGACTCTATGTCGGTGT+TGG | + | chr3_3:11333212-11333231 | Msa0442090:CDS | 50.0% | |
| TCAGCAGCAACATCAGAACC+GGG | - | chr3_3:11333323-11333342 | None:intergenic | 50.0% | |
| !! | CCGAGTATTGGAGATGCTCT+AGG | - | chr3_3:11333555-11333574 | None:intergenic | 50.0% |
| AACTATTGTGGGGAGCTGCA+TGG | + | chr3_3:11333867-11333886 | Msa0442090:CDS | 50.0% | |
| ! | GGGAGCTGCATGGCTTTTTA+GGG | + | chr3_3:11333877-11333896 | Msa0442090:CDS | 50.0% |
| GTGCACATGTCCTTCTCTCA+AGG | + | chr3_3:11333990-11334009 | Msa0442090:CDS | 50.0% | |
| CCTCTGTGGTGAATCCTCTT+GGG | - | chr3_3:11334736-11334755 | None:intergenic | 50.0% | |
| TCCTCTGTGGTGAATCCTCT+TGG | - | chr3_3:11334737-11334756 | None:intergenic | 50.0% | |
| TTGGTTGGAGCCATAGTTGG+AGG | + | chr3_3:11334853-11334872 | Msa0442090:CDS | 50.0% | |
| !! | CTGGTTTGGACCTCCAACTA+TGG | - | chr3_3:11334866-11334885 | None:intergenic | 50.0% |
| ! | GGAAATCCGTCGTTCTGGTT+TGG | - | chr3_3:11334880-11334899 | None:intergenic | 50.0% |
| CATCAGGAAATCCGTCGTTC+TGG | - | chr3_3:11334885-11334904 | None:intergenic | 50.0% | |
| ! | GACGGATTTCCTGATGATCG+CGG | + | chr3_3:11334889-11334908 | Msa0442090:CDS | 50.0% |
| CTATAGTCACCGCGATCATC+AGG | - | chr3_3:11334901-11334920 | None:intergenic | 50.0% | |
| GGACCTTTAGCGTACTTTGC+CGG | + | chr3_3:11334961-11334980 | Msa0442090:CDS | 50.0% | |
| !! | CAGATGGTGGTGGACTATGA+AGG | + | chr3_3:11335099-11335118 | Msa0442090:three_prime_UTR | 50.0% |
| TTCAAGGCCAGAGGTCAGGA+AGG | + | chr3_3:11331173-11331192 | Msa0442090:CDS | 55.0% | |
| TACATCGGCAAGGCGACCAT+CGG | - | chr3_3:11331245-11331264 | None:intergenic | 55.0% | |
| TCACCGACATGTGTGGTGTC+TGG | + | chr3_3:11331367-11331386 | Msa0442090:intron | 55.0% | |
| GTGCCAGACACCACACATGT+CGG | - | chr3_3:11331373-11331392 | None:intergenic | 55.0% | |
| ATCTGTGGCGTGGCGAATTG+CGG | - | chr3_3:11333162-11333181 | None:intergenic | 55.0% | |
| ! | AACTGCTGCTGCACTTGCTG+CGG | + | chr3_3:11333343-11333362 | Msa0442090:CDS | 55.0% |
| ! | GGGGAGCTGCATGGCTTTTT+AGG | + | chr3_3:11333876-11333895 | Msa0442090:CDS | 55.0% |
| CCCAAGAGGATTCACCACAG+AGG | + | chr3_3:11334733-11334752 | Msa0442090:CDS | 55.0% | |
| GGAGGTCCAAACCAGAACGA+CGG | + | chr3_3:11334871-11334890 | Msa0442090:CDS | 55.0% | |
| GAGGGAGCCTTCCTGACCTC+TGG | - | chr3_3:11331183-11331202 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 11331024 | 11335390 | 11331024 | ID=Msa0442090;Name=Msa0442090 |
| chr3_3 | mRNA | 11331024 | 11335390 | 11331024 | ID=Msa0442090-mRNA-1;Parent=Msa0442090;Name=Msa0442090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=40|1|1|1|1|1|6|397|484 |
| chr3_3 | exon | 11331024 | 11331261 | 11331024 | ID=Msa0442090-mRNA-1:exon:2386;Parent=Msa0442090-mRNA-1 |
| chr3_3 | exon | 11333020 | 11333523 | 11333020 | ID=Msa0442090-mRNA-1:exon:2387;Parent=Msa0442090-mRNA-1 |
| chr3_3 | exon | 11333863 | 11334012 | 11333863 | ID=Msa0442090-mRNA-1:exon:2388;Parent=Msa0442090-mRNA-1 |
| chr3_3 | exon | 11334113 | 11334224 | 11334113 | ID=Msa0442090-mRNA-1:exon:2389;Parent=Msa0442090-mRNA-1 |
| chr3_3 | exon | 11334421 | 11334584 | 11334421 | ID=Msa0442090-mRNA-1:exon:2390;Parent=Msa0442090-mRNA-1 |
| chr3_3 | exon | 11334667 | 11335390 | 11334667 | ID=Msa0442090-mRNA-1:exon:2391;Parent=Msa0442090-mRNA-1 |
| chr3_3 | five_prime_UTR | 11331024 | 11331063 | 11331024 | ID=Msa0442090-mRNA-1:five_prime_utr;Parent=Msa0442090-mRNA-1 |
| chr3_3 | CDS | 11331064 | 11331261 | 11331064 | ID=Msa0442090-mRNA-1:cds;Parent=Msa0442090-mRNA-1 |
| chr3_3 | CDS | 11333020 | 11333523 | 11333020 | ID=Msa0442090-mRNA-1:cds;Parent=Msa0442090-mRNA-1 |
| chr3_3 | CDS | 11333863 | 11334012 | 11333863 | ID=Msa0442090-mRNA-1:cds;Parent=Msa0442090-mRNA-1 |
| chr3_3 | CDS | 11334113 | 11334224 | 11334113 | ID=Msa0442090-mRNA-1:cds;Parent=Msa0442090-mRNA-1 |
| chr3_3 | CDS | 11334421 | 11334584 | 11334421 | ID=Msa0442090-mRNA-1:cds;Parent=Msa0442090-mRNA-1 |
| chr3_3 | CDS | 11334667 | 11334993 | 11334667 | ID=Msa0442090-mRNA-1:cds;Parent=Msa0442090-mRNA-1 |
| chr3_3 | three_prime_UTR | 11334994 | 11335390 | 11334994 | ID=Msa0442090-mRNA-1:three_prime_utr;Parent=Msa0442090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
