AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0667680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667680 MtrunA17_Chr4g0006191 94.048 252 7 1 1 244 1 252 2.29e-173 477
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0667680 AT5G60540.1 69.565 253 65 2 4 244 3 255 3.26e-125 355

Find 78 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACTTTCTTTAACGATTA+TGG 0.140129 4_4:-8258568 Msa0667680:three_prime_UTR
TTCCTCTGTTGAAGATAAAA+AGG 0.242812 4_4:-8260982 Msa0667680:intron
AAAACTCCACGGAATGTTTC+AGG 0.263425 4_4:+8261095 None:intergenic
TGCAAATGGGAAAGCCAGTT+TGG 0.304726 4_4:-8262331 Msa0667680:CDS
CAACCCACCTGTAGCTTTAT+CGG 0.305466 4_4:+8262280 None:intergenic
AGGGATGATTAAGGAATTAA+TGG 0.307293 4_4:+8263097 None:intergenic
CGAGTATCAGCTGTCAATTC+AGG 0.312317 4_4:+8258816 None:intergenic
TTCACCACCAGGGATGATTA+AGG 0.317717 4_4:+8263088 None:intergenic
GGCCCTACGTCAATAATTGC+TGG 0.323344 4_4:+8261062 None:intergenic
CGCTACTCGAGGCCTCTTCT+CGG 0.359298 4_4:+8258668 None:intergenic
CGACCTTCCTATCTTTCAAT+AGG 0.362563 4_4:-8258599 Msa0667680:exon
CTTGCGAGAGTTTGTGCAAA+TGG 0.368937 4_4:-8262345 Msa0667680:CDS
TTAATGGTGAGAAGCTGTTC+TGG 0.370042 4_4:+8263113 None:intergenic
TTAATTTATAAAATTTCCTT+TGG 0.376440 4_4:-8258537 Msa0667680:three_prime_UTR
GCAAATGGGAAAGCCAGTTT+GGG 0.378446 4_4:-8262330 Msa0667680:CDS
GCATAGTTATTTCTTGAAGA+TGG 0.389396 4_4:-8258701 Msa0667680:CDS
TATTGCAGTTCTAAGAAGAT+TGG 0.396491 4_4:-8263162 Msa0667680:intron
CCTGCACAGGTTCCCCAAAC+TGG 0.397058 4_4:+8262317 None:intergenic
TGTTTCAGGACCACCTTCCT+TGG 0.406689 4_4:+8261109 None:intergenic
TCAGCTAGGACTTGAACTTC+TGG 0.407051 4_4:+8261041 None:intergenic
TTATAATGATCGATTATCAA+TGG 0.410738 4_4:+8258351 None:intergenic
ACTGTGCACAGGAATTTCTT+TGG 0.415918 4_4:-8261903 Msa0667680:CDS
GTGTGGTCCTATTGAAAGAT+AGG 0.418750 4_4:+8258592 None:intergenic
CAGGAATTTCTTTGGCAGCC+AGG 0.427750 4_4:-8261895 Msa0667680:intron
GTTGGTGTTCTCGCTTTACA+AGG 0.427789 4_4:-8263296 Msa0667680:intron
TTATTTGTACTCACTTCTGC+TGG 0.435763 4_4:+8258640 None:intergenic
CATAGTTATTTCTTGAAGAT+GGG 0.447901 4_4:-8258700 Msa0667680:CDS
TCTAAGATCTAACGATTCTC+AGG 0.452628 4_4:+8258506 None:intergenic
CCAGTTTGGGGAACCTGTGC+AGG 0.461068 4_4:-8262317 Msa0667680:CDS
TGGTGGTGAAAGCACCACTA+TGG 0.467220 4_4:-8263075 Msa0667680:CDS
GCCCTACGTCAATAATTGCT+GGG 0.475950 4_4:+8261063 None:intergenic
ATTGCAGTTCTAAGAAGATT+GGG 0.477579 4_4:-8263161 Msa0667680:intron
TGCACAAACTCTCGCAAGGC+CGG 0.486422 4_4:+8262350 None:intergenic
TTGCGAGAGTTTGTGCAAAT+GGG 0.487972 4_4:-8262344 Msa0667680:CDS
TCAGATTCAAAGCTTTGAAA+CGG 0.493128 4_4:-8261156 Msa0667680:intron
CCTTCCTTGGAGACGAGCTC+AGG 0.500108 4_4:+8261122 None:intergenic
CTAAGAAGATTGGGTGTGAA+AGG 0.510068 4_4:-8263152 Msa0667680:CDS
TTCCTGGCCGATAAAGCTAC+AGG 0.513201 4_4:-8262287 Msa0667680:intron
GCTACTCGAGGCCTCTTCTC+GGG 0.516139 4_4:+8258669 None:intergenic
ATTAATTCCTTAATCATCCC+TGG 0.517436 4_4:-8263095 Msa0667680:CDS
CACCTGTAGCTTTATCGGCC+AGG 0.518373 4_4:+8262285 None:intergenic
ATAGTGGTGCTTTCACCACC+AGG 0.540919 4_4:+8263077 None:intergenic
TTCTCAGGTAATGTTTCCAA+AGG 0.545151 4_4:+8258521 None:intergenic
TTCAGCGAGTTTAGCCATAG+TGG 0.547805 4_4:+8263061 None:intergenic
GTTATAGTTGCTGTGCGACA+AGG 0.550991 4_4:-8258864 Msa0667680:CDS
GTTCAATACACATTGCAGCT+TGG 0.560056 4_4:+8258284 None:intergenic
CAGGAAAATTAGTCCTGCAC+AGG 0.560529 4_4:+8262304 None:intergenic
CACTCTCCACAATATGGCGG+TGG 0.562872 4_4:-8263318 None:intergenic
CTCCACAATATGGCGGTGGT+TGG 0.571074 4_4:-8263314 None:intergenic
CCTGAGCTCGTCTCCAAGGA+AGG 0.574869 4_4:-8261122 Msa0667680:CDS
GACTTGATTGCACTGTGCAC+AGG 0.576833 4_4:-8261914 Msa0667680:CDS
CCCCAGCAATTATTGACGTA+GGG 0.577921 4_4:-8261064 Msa0667680:CDS
ACTGGTGGACAAGAACTTGT+TGG 0.583767 4_4:-8261939 Msa0667680:CDS
GGTGGACAAGAACTTGTTGG+TGG 0.593412 4_4:-8261936 Msa0667680:CDS
ATGATTTCAGGACAGAAGAC+TGG 0.594853 4_4:-8261957 Msa0667680:intron
TGTGCGACAAGGGAACATAC+TGG 0.599628 4_4:-8258853 Msa0667680:CDS
AGTACCTGAGCTCGTCTCCA+AGG 0.600137 4_4:-8261126 Msa0667680:CDS
GCCACTCTGACAGAAGGTAC+AGG 0.603479 4_4:+8261014 None:intergenic
GGGAAATGTGACCCGAGAAG+AGG 0.603767 4_4:-8258680 Msa0667680:CDS
CATTTGCACAAACTCTCGCA+AGG 0.605186 4_4:+8262346 None:intergenic
TTATAGTTGCTGTGCGACAA+GGG 0.613272 4_4:-8258863 Msa0667680:CDS
AAGGTACAGGATAATCAGCT+AGG 0.622940 4_4:+8261027 None:intergenic
TGCTGGAACAACGCTACTCG+AGG 0.626381 4_4:+8258657 None:intergenic
ACTCGCTGAATATTTCAACC+TGG 0.638716 4_4:-8263048 Msa0667680:intron
CGTTAAAGAAAGTCATAGTG+TGG 0.642783 4_4:+8258575 None:intergenic
GGTCCTATTGAAAGATAGGA+AGG 0.645223 4_4:+8258596 None:intergenic
CCCTACGTCAATAATTGCTG+GGG 0.645849 4_4:+8261064 None:intergenic
AATTGACAGCTGATACTCGA+TGG 0.647353 4_4:-8258812 Msa0667680:intron
GAACTCGCCACTCTGACAGA+AGG 0.651056 4_4:+8261008 None:intergenic
GAGCTCGTCTCCAAGGAAGG+TGG 0.657634 4_4:-8261119 Msa0667680:CDS
TCCTGTACCTTCTGTCAGAG+TGG 0.657983 4_4:-8261015 Msa0667680:CDS
GCCCCAGCAATTATTGACGT+AGG 0.663150 4_4:-8261065 Msa0667680:CDS
ATTTCAGGACAGAAGACTGG+TGG 0.674164 4_4:-8261954 Msa0667680:intron
TATGGTATGACAGGAGAATG+CGG 0.675605 4_4:-8258901 Msa0667680:intron
GGTGGTCCTGAAACATTCCG+TGG 0.679473 4_4:-8261101 Msa0667680:CDS
AATTCCTTAATCATCCCTGG+TGG 0.708340 4_4:-8263092 Msa0667680:CDS
TAGTGGTGCTTTCACCACCA+GGG 0.725360 4_4:+8263078 None:intergenic
CAAATGGGAAAGCCAGTTTG+GGG 0.735805 4_4:-8262329 Msa0667680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACTTATATTTTATCATA+TGG - chr4_4:8258915-8258934 Msa0667680:intron 10.0%
!!! TTTTATTTTGTTTCATTTAT+AGG - chr4_4:8259797-8259816 Msa0667680:intron 10.0%
!! ACTATTAATAAAATATAAGA+TGG + chr4_4:8260739-8260758 None:intergenic 10.0%
!!! CTTATATTTTATTAATAGTA+TGG - chr4_4:8260740-8260759 Msa0667680:intron 10.0%
!!! GTTATAGATAAATTATTTTT+AGG - chr4_4:8261465-8261484 Msa0667680:intron 10.0%
!!! TGTTTAGATAAATTATTTTA+AGG - chr4_4:8261494-8261513 Msa0667680:intron 10.0%
!!! AATATGTTTCTAAATATATA+TGG - chr4_4:8262644-8262663 Msa0667680:intron 10.0%
!! TTATAATGTTATATGATATA+TGG - chr4_4:8262810-8262829 Msa0667680:intron 10.0%
!! TTAATTTATAAAATTTCCTT+TGG - chr4_4:8263026-8263045 Msa0667680:intron 10.0%
!! TTATTCAATCAATAAATCAA+AGG + chr4_4:8259847-8259866 None:intergenic 15.0%
!! TAGTAAATATCTTATCATTT+AGG - chr4_4:8259917-8259936 Msa0667680:intron 15.0%
!! AGAAATTAAAAGAAGAATAA+AGG - chr4_4:8261050-8261069 Msa0667680:CDS 15.0%
!! AATAAGTATATATACAAAAC+AGG + chr4_4:8261569-8261588 None:intergenic 15.0%
!!! ATATAACATTATAACTTGTA+AGG + chr4_4:8262804-8262823 None:intergenic 15.0%
!!! AGAAAGTTTAATATTCTTTT+TGG - chr4_4:8263080-8263099 Msa0667680:CDS 15.0%
!!! GAAAGTTTAATATTCTTTTT+GGG - chr4_4:8263081-8263100 Msa0667680:CDS 15.0%
!! TGAGTGATATAATATTTCTT+AGG - chr4_4:8258824-8258843 Msa0667680:CDS 20.0%
!!! ACTTATATTTTATCATATGG+CGG - chr4_4:8258918-8258937 Msa0667680:intron 20.0%
!! GACAAAGTAATTAAATACTA+TGG - chr4_4:8258957-8258976 Msa0667680:intron 20.0%
!! AAAGTAATTAAATACTATGG+TGG - chr4_4:8258960-8258979 Msa0667680:intron 20.0%
!!! GTGATATTTAACTATTTTGT+CGG + chr4_4:8259042-8259061 None:intergenic 20.0%
!! TAATAATCCATGATATTTGT+AGG + chr4_4:8259429-8259448 None:intergenic 20.0%
!! AAGGAAATAAAATATAAAGC+TGG + chr4_4:8259750-8259769 None:intergenic 20.0%
!! GTAAAAAAGAATAAGAGAAA+AGG + chr4_4:8259769-8259788 None:intergenic 20.0%
!!! ATTAAACGTTATCCTTTTAT+TGG - chr4_4:8259869-8259888 Msa0667680:intron 20.0%
!! TGATAAGATATTTACTAACA+AGG + chr4_4:8259914-8259933 None:intergenic 20.0%
!!! TATTGTTCTAAATGAAATTC+CGG - chr4_4:8260343-8260362 Msa0667680:intron 20.0%
!!! TTGTAATTTTATAACTTCTC+AGG - chr4_4:8260676-8260695 Msa0667680:intron 20.0%
!!! GTAACAGTAAACATTTTTAT+GGG + chr4_4:8261627-8261646 None:intergenic 20.0%
!! AAACCACTTAACTATAAAAA+TGG - chr4_4:8262187-8262206 Msa0667680:intron 20.0%
!! TAGAAACATATTATATGTCA+TGG + chr4_4:8262636-8262655 None:intergenic 20.0%
!!! TTCAAATGTTATATTTTTGC+AGG - chr4_4:8262840-8262859 Msa0667680:intron 20.0%
!!! TTTTGGGATATAGTATATAT+TGG - chr4_4:8263097-8263116 Msa0667680:CDS 20.0%
!! TTATAATGATCGATTATCAA+TGG + chr4_4:8263215-8263234 None:intergenic 20.0%
! TTAGTAAAAGTGAATGAAGA+AGG + chr4_4:8258367-8258386 None:intergenic 25.0%
!! CTTATATTTTATCATATGGC+GGG - chr4_4:8258919-8258938 Msa0667680:intron 25.0%
! GACAAAATAGTCGAATATTA+TGG - chr4_4:8258999-8259018 Msa0667680:intron 25.0%
! AAAATAGTCGAATATTATGG+TGG - chr4_4:8259002-8259021 Msa0667680:intron 25.0%
!! GATTTTATGATCATCAAATC+AGG - chr4_4:8259134-8259153 Msa0667680:intron 25.0%
! TGTTTCAATTTATCAGTTTC+CGG - chr4_4:8259194-8259213 Msa0667680:intron 25.0%
! ATAAAATATAAAGCTGGTTG+TGG + chr4_4:8259744-8259763 None:intergenic 25.0%
! TATTGGACTTAACCAATAAA+AGG + chr4_4:8259884-8259903 None:intergenic 25.0%
! ACTGCTAATAACTAACAAAA+GGG + chr4_4:8259945-8259964 None:intergenic 25.0%
! TACTGCTAATAACTAACAAA+AGG + chr4_4:8259946-8259965 None:intergenic 25.0%
!! ATTGTTCTAAATGAAATTCC+GGG - chr4_4:8260344-8260363 Msa0667680:intron 25.0%
!!! AAAAAGGTTAGTTTTTGACA+TGG - chr4_4:8260597-8260616 Msa0667680:intron 25.0%
!! AATTTAAGATCAGTAGAGTT+CGG - chr4_4:8260651-8260670 Msa0667680:intron 25.0%
! TGTTTGTGAATTGAAGTAAT+AGG - chr4_4:8260765-8260784 Msa0667680:intron 25.0%
! TTGAAGTAATAGGTTGTAAA+TGG - chr4_4:8260775-8260794 Msa0667680:intron 25.0%
!!! TATTTTGATAATGTCCTTCT+CGG - chr4_4:8260897-8260916 Msa0667680:intron 25.0%
!!! TCAACTGATCAGTTATTTTT+GGG + chr4_4:8261186-8261205 None:intergenic 25.0%
! AGAGGTAGGAAATATATATA+TGG + chr4_4:8261225-8261244 None:intergenic 25.0%
! TGAGTAAAAAAAAACCAACT+CGG + chr4_4:8261316-8261335 None:intergenic 25.0%
! GTATATATACTTATTCTCCT+TGG - chr4_4:8261574-8261593 Msa0667680:intron 25.0%
!! AAAAATAAGGAACTTTTCCA+AGG + chr4_4:8261594-8261613 None:intergenic 25.0%
!! GGTAACAGTAAACATTTTTA+TGG + chr4_4:8261628-8261647 None:intergenic 25.0%
! TATAAGACTGGAAATTTACA+AGG + chr4_4:8261649-8261668 None:intergenic 25.0%
!! AAATTTCCAGTCTTATATGT+TGG - chr4_4:8261652-8261671 Msa0667680:intron 25.0%
! TACTGATATACTTCACTATT+AGG - chr4_4:8261700-8261719 Msa0667680:intron 25.0%
! ACAGCATATATATACTACAT+TGG + chr4_4:8261978-8261997 None:intergenic 25.0%
! ATTTCTTAAACTAGCAAGAA+TGG - chr4_4:8262003-8262022 Msa0667680:intron 25.0%
! TTTAGATTAAATGGTACATG+TGG + chr4_4:8262086-8262105 None:intergenic 25.0%
! GCAAACAAGTTTAGATTAAA+TGG + chr4_4:8262095-8262114 None:intergenic 25.0%
!!! AGACCATTTTTATAGTTAAG+TGG + chr4_4:8262193-8262212 None:intergenic 25.0%
!! TAGTTCTTAACTTGAAAAGA+TGG - chr4_4:8262246-8262265 Msa0667680:intron 25.0%
! AACTAAGTTATTATATCCAG+TGG + chr4_4:8262594-8262613 None:intergenic 25.0%
! CTAAATATATATGGTATGAC+AGG - chr4_4:8262653-8262672 Msa0667680:intron 25.0%
!! TATAACTTGTAAGGTTCAAA+CGG + chr4_4:8262795-8262814 None:intergenic 25.0%
! ATGTTATATGATATATGGAG+TGG - chr4_4:8262815-8262834 Msa0667680:intron 25.0%
!!! CATAGTTATTTCTTGAAGAT+GGG - chr4_4:8262863-8262882 Msa0667680:intron 25.0%
! ATGACTTTCTTTAACGATTA+TGG - chr4_4:8262995-8263014 Msa0667680:intron 25.0%
! GAAACAAATAAAAATGACAC+AGG + chr4_4:8263251-8263270 None:intergenic 25.0%
!! TATTGCAGTTCTAAGAAGAT+TGG - chr4_4:8258401-8258420 Msa0667680:three_prime_UTR 30.0%
!! ATTGCAGTTCTAAGAAGATT+GGG - chr4_4:8258402-8258421 Msa0667680:three_prime_UTR 30.0%
AGGGATGATTAAGGAATTAA+TGG + chr4_4:8258469-8258488 None:intergenic 30.0%
ATTAATTCCTTAATCATCCC+TGG - chr4_4:8258468-8258487 Msa0667680:three_prime_UTR 30.0%
! ACTGGATGTATTTTCATATG+TGG - chr4_4:8258608-8258627 Msa0667680:CDS 30.0%
CATAATCTTGCATGATGAAT+AGG - chr4_4:8258694-8258713 Msa0667680:CDS 30.0%
GACAAGTATAGACTTACTTT+AGG - chr4_4:8258886-8258905 Msa0667680:CDS 30.0%
AGTATAGACTTACTTTAGGT+AGG - chr4_4:8258890-8258909 Msa0667680:CDS 30.0%
!! GAATATTATGGTGGATGTTT+CGG - chr4_4:8259011-8259030 Msa0667680:intron 30.0%
!!! CTCTGCAATGTTTTAATTTG+TGG - chr4_4:8259309-8259328 Msa0667680:intron 30.0%
! TAATTTGTGGTTAGCAATCA+CGG - chr4_4:8259322-8259341 Msa0667680:intron 30.0%
ACAATTACAATATGCAGACA+CGG + chr4_4:8259380-8259399 None:intergenic 30.0%
TTTGTAGGCAGTTACAAATA+CGG + chr4_4:8259414-8259433 None:intergenic 30.0%
AGAAACAAGGTTTCAAATTG+AGG + chr4_4:8259475-8259494 None:intergenic 30.0%
! ATCGTTAGATTTTTGTGTGA+CGG + chr4_4:8259561-8259580 None:intergenic 30.0%
CAAATGACAAACATGATTTC+AGG - chr4_4:8259594-8259613 Msa0667680:intron 30.0%
ACTAACAAGGAAAGAGATAT+TGG + chr4_4:8259901-8259920 None:intergenic 30.0%
! GGTTTGTTCTAACTTAAACA+AGG + chr4_4:8260111-8260130 None:intergenic 30.0%
TTATTCACAGAGTTCTTCTA+TGG - chr4_4:8260305-8260324 Msa0667680:intron 30.0%
ATCTGAGTAAACATGTCATT+TGG + chr4_4:8260393-8260412 None:intergenic 30.0%
!! TCAGATTCAAAGCTTTGAAA+CGG - chr4_4:8260407-8260426 Msa0667680:intron 30.0%
TTCCTCTGTTGAAGATAAAA+AGG - chr4_4:8260581-8260600 Msa0667680:intron 30.0%
! AACCTTTTTATCTTCAACAG+AGG + chr4_4:8260586-8260605 None:intergenic 30.0%
ACTGATCTTAAATTCGCAAA+GGG + chr4_4:8260645-8260664 None:intergenic 30.0%
TACTGATCTTAAATTCGCAA+AGG + chr4_4:8260646-8260665 None:intergenic 30.0%
!! TGTAAATGGTGATTTGTTTC+AGG - chr4_4:8260789-8260808 Msa0667680:intron 30.0%
!! GTAAATGGTGATTTGTTTCA+GGG - chr4_4:8260790-8260809 Msa0667680:intron 30.0%
!!! ATTTTGATAATGTCCTTCTC+GGG - chr4_4:8260898-8260917 Msa0667680:intron 30.0%
ACAGCATAAAGAATGAACTA+GGG - chr4_4:8260928-8260947 Msa0667680:intron 30.0%
ATAAAGAATGAACTAGGGAT+AGG - chr4_4:8260933-8260952 Msa0667680:intron 30.0%
AACGAACATAACATAACAAC+TGG + chr4_4:8260970-8260989 None:intergenic 30.0%
CATTATTACTCTTTCTAACC+TGG + chr4_4:8261131-8261150 None:intergenic 30.0%
!! GTCAACTGATCAGTTATTTT+TGG + chr4_4:8261187-8261206 None:intergenic 30.0%
AGAGAAGTAGTTGTATTTGT+TGG + chr4_4:8261270-8261289 None:intergenic 30.0%
TTATTAGCAGTATATGCTAG+AGG + chr4_4:8261348-8261367 None:intergenic 30.0%
ATATACTGCTAATAAAGCCA+CGG - chr4_4:8261353-8261372 Msa0667680:intron 30.0%
! GAAAAGAGTGTGTAGAAAAA+TGG - chr4_4:8261436-8261455 Msa0667680:intron 30.0%
!!! TGTTTTGATCTTTATTTGCC+TGG - chr4_4:8261523-8261542 Msa0667680:intron 30.0%
AAACAGGAAATTTCCACAAT+AGG + chr4_4:8261553-8261572 None:intergenic 30.0%
! GGTGATTGACTATATCTTTT+TGG - chr4_4:8261761-8261780 Msa0667680:intron 30.0%
TAGCAGAATCACAAGTTTAT+AGG - chr4_4:8261839-8261858 Msa0667680:intron 30.0%
TAGAAAACATAGTAACCACT+AGG + chr4_4:8261903-8261922 None:intergenic 30.0%
! AGTGGTTACTATGTTTTCTA+TGG - chr4_4:8261903-8261922 Msa0667680:CDS 30.0%
! TAAACTAGCAAGAATGGATT+TGG - chr4_4:8262009-8262028 Msa0667680:intron 30.0%
! AATCTAAACTTGTTTGCTTG+AGG - chr4_4:8262098-8262117 Msa0667680:intron 30.0%
! ATCTAAACTTGTTTGCTTGA+GGG - chr4_4:8262099-8262118 Msa0667680:intron 30.0%
TTATAATGCACTGTTACGTA+CGG - chr4_4:8262159-8262178 Msa0667680:intron 30.0%
ATAGCATAAATGTTCGATAG+AGG + chr4_4:8262225-8262244 None:intergenic 30.0%
AGACTAGAAAAACTATGATC+AGG + chr4_4:8262296-8262315 None:intergenic 30.0%
TTATGAGAAAGATAAGAGAC+TGG + chr4_4:8262319-8262338 None:intergenic 30.0%
! ACATCATTTGTCTTATTGAG+AGG + chr4_4:8262412-8262431 None:intergenic 30.0%
TCTAGTACAAAAAGACAAGT+AGG + chr4_4:8262526-8262545 None:intergenic 30.0%
! TACTTGTCTTTTTGTACTAG+AGG - chr4_4:8262525-8262544 Msa0667680:intron 30.0%
TTATTATATCCAGTGGCAAT+AGG + chr4_4:8262587-8262606 None:intergenic 30.0%
!! GCATAGTTATTTCTTGAAGA+TGG - chr4_4:8262862-8262881 Msa0667680:intron 30.0%
TTTACCTCTTGTAACTTCAC+TGG - chr4_4:8258590-8258609 Msa0667680:exon 35.0%
CGTGCACGATTATCATTTAT+CGG + chr4_4:8258775-8258794 None:intergenic 35.0%
GTAAAGTATGTTTGCAGTGT+CGG - chr4_4:8259075-8259094 Msa0667680:intron 35.0%
TAAAGTATGTTTGCAGTGTC+GGG - chr4_4:8259076-8259095 Msa0667680:intron 35.0%
ATCAAATCAGGTCATGATTC+TGG - chr4_4:8259146-8259165 Msa0667680:intron 35.0%
GTGTCTGCATATTGTAATTG+TGG - chr4_4:8259379-8259398 Msa0667680:intron 35.0%
GTAACTGCCTACAAATATCA+TGG - chr4_4:8259419-8259438 Msa0667680:intron 35.0%
GAAAAGAGAAGAGAGAAACA+AGG + chr4_4:8259488-8259507 None:intergenic 35.0%
ATTTCTCAAACCCAACCTAA+GGG + chr4_4:8259513-8259532 None:intergenic 35.0%
TATTTCTCAAACCCAACCTA+AGG + chr4_4:8259514-8259533 None:intergenic 35.0%
! TCGTTAGATTTTTGTGTGAC+GGG + chr4_4:8259560-8259579 None:intergenic 35.0%
CGTCAAATACATGAATTACC+TGG + chr4_4:8259689-8259708 None:intergenic 35.0%
GGTAATTCATGTATTTGACG+TGG - chr4_4:8259689-8259708 Msa0667680:intron 35.0%
ACTAATCTCTCGAACTTTGT+GGG - chr4_4:8260011-8260030 Msa0667680:intron 35.0%
ATCGTATCAGAACTTAGAAG+AGG - chr4_4:8260224-8260243 Msa0667680:intron 35.0%
ATTCTTCCTATGACCTATAG+TGG + chr4_4:8260286-8260305 None:intergenic 35.0%
TCCAAAATTATATCCTCTCC+CGG + chr4_4:8260365-8260384 None:intergenic 35.0%
TGATCTTAAATTCGCAAAGG+GGG + chr4_4:8260643-8260662 None:intergenic 35.0%
CTGATCTTAAATTCGCAAAG+GGG + chr4_4:8260644-8260663 None:intergenic 35.0%
AAAACATTATGCACAGAGCA+CGG - chr4_4:8260854-8260873 Msa0667680:intron 35.0%
GACAGCATAAAGAATGAACT+AGG - chr4_4:8260927-8260946 Msa0667680:intron 35.0%
!!! ACTGATCAGTTATTTTTGGG+TGG + chr4_4:8261183-8261202 None:intergenic 35.0%
CTCTAACACATTAACTAACC+AGG - chr4_4:8261286-8261305 Msa0667680:intron 35.0%
TATACTGCTAATAAAGCCAC+GGG - chr4_4:8261354-8261373 Msa0667680:intron 35.0%
CTATAATCCCAATAGCAACT+TGG + chr4_4:8261398-8261417 None:intergenic 35.0%
! ACACACTCTTTTCATTTGCT+CGG + chr4_4:8261429-8261448 None:intergenic 35.0%
ATGAGACCAACATATAAGAC+TGG + chr4_4:8261661-8261680 None:intergenic 35.0%
TTGTCTATACTGACATCGAT+CGG - chr4_4:8261728-8261747 Msa0667680:intron 35.0%
ATTCTGCTACACGTATATGA+TGG + chr4_4:8261828-8261847 None:intergenic 35.0%
! AAGTTTATAGGATTAGCGCA+AGG - chr4_4:8261851-8261870 Msa0667680:intron 35.0%
! TTGAATTTTGTTCTGCCTAG+TGG - chr4_4:8261885-8261904 Msa0667680:intron 35.0%
! GTTTTCCAATTCTTCAACGA+GGG + chr4_4:8261948-8261967 None:intergenic 35.0%
! AGTTTTCCAATTCTTCAACG+AGG + chr4_4:8261949-8261968 None:intergenic 35.0%
! GACGTATACCTGAATTTTAC+TGG - chr4_4:8262031-8262050 Msa0667680:intron 35.0%
TCTAGACTCCAGTAAAATTC+AGG + chr4_4:8262042-8262061 None:intergenic 35.0%
! TGAATTTTACTGGAGTCTAG+AGG - chr4_4:8262041-8262060 Msa0667680:intron 35.0%
AACTTGAAAAGATGGATGCT+TGG - chr4_4:8262254-8262273 Msa0667680:intron 35.0%
AAAAGATGGATGCTTGGATT+TGG - chr4_4:8262260-8262279 Msa0667680:intron 35.0%
AAATCCCAGCAAAGAATGTT+GGG + chr4_4:8262376-8262395 None:intergenic 35.0%
! CATTTGTCTTATTGAGAGGA+AGG + chr4_4:8262408-8262427 None:intergenic 35.0%
ATGTTTAGAGAGTGATAGAG+AGG - chr4_4:8262451-8262470 Msa0667680:intron 35.0%
!! GAGAGGATGTAAAGAGTATT+TGG - chr4_4:8262468-8262487 Msa0667680:intron 35.0%
!! GGATGTAAAGAGTATTTGGA+AGG - chr4_4:8262472-8262491 Msa0667680:intron 35.0%
!! TAAAGAGTATTTGGAAGGAG+TGG - chr4_4:8262477-8262496 Msa0667680:intron 35.0%
GAGAATCCATATACGTAACA+CGG - chr4_4:8262553-8262572 Msa0667680:intron 35.0%
TTATTTGTACTCACTTCTGC+TGG + chr4_4:8262926-8262945 None:intergenic 35.0%
CGTTAAAGAAAGTCATAGTG+TGG + chr4_4:8262991-8263010 None:intergenic 35.0%
TTCTCAGGTAATGTTTCCAA+AGG + chr4_4:8263045-8263064 None:intergenic 35.0%
! TCTAAGATCTAACGATTCTC+AGG + chr4_4:8263060-8263079 None:intergenic 35.0%
TCTTTCAACGAACACATAGC+AGG - chr4_4:8258291-8258310 Msa0667680:three_prime_UTR 40.0%
CTAAGAAGATTGGGTGTGAA+AGG - chr4_4:8258411-8258430 Msa0667680:three_prime_UTR 40.0%
TTAATGGTGAGAAGCTGTTC+TGG + chr4_4:8258453-8258472 None:intergenic 40.0%
AATTCCTTAATCATCCCTGG+TGG - chr4_4:8258471-8258490 Msa0667680:three_prime_UTR 40.0%
ACTCGCTGAATATTTCAACC+TGG - chr4_4:8258515-8258534 Msa0667680:three_prime_UTR 40.0%
! AAGCTGAGAGTGTATATACC+AGG + chr4_4:8258536-8258555 None:intergenic 40.0%
ACATCCAGTGAAGTTACAAG+AGG + chr4_4:8258597-8258616 None:intergenic 40.0%
CACTCATATTAGAGCATGCT+AGG + chr4_4:8258810-8258829 None:intergenic 40.0%
TTGCGAGAGTTTGTGCAAAT+GGG - chr4_4:8259219-8259238 Msa0667680:intron 40.0%
ATGATTTCAGGACAGAAGAC+TGG - chr4_4:8259606-8259625 Msa0667680:intron 40.0%
ACTGTGCACAGGAATTTCTT+TGG - chr4_4:8259660-8259679 Msa0667680:intron 40.0%
! ATTTGACGTGGCTTCTTTTG+TGG - chr4_4:8259701-8259720 Msa0667680:intron 40.0%
! TTTGACGTGGCTTCTTTTGT+GGG - chr4_4:8259702-8259721 Msa0667680:intron 40.0%
GACTAATCTCTCGAACTTTG+TGG - chr4_4:8260010-8260029 Msa0667680:intron 40.0%
CATCTCATCTATGAGGTCTT+GGG - chr4_4:8260135-8260154 Msa0667680:intron 40.0%
ACTTAGAAGAGGCTATGTGA+AGG - chr4_4:8260235-8260254 Msa0667680:intron 40.0%
TCTAAATGAAATTCCGGGAG+AGG - chr4_4:8260349-8260368 Msa0667680:intron 40.0%
! TCCGGGAGAGGATATAATTT+TGG - chr4_4:8260361-8260380 Msa0667680:intron 40.0%
AAAACTCCACGGAATGTTTC+AGG + chr4_4:8260471-8260490 None:intergenic 40.0%
AAGGTACAGGATAATCAGCT+AGG + chr4_4:8260539-8260558 None:intergenic 40.0%
AAGAATGAACTAGGGATAGG+AGG - chr4_4:8260936-8260955 Msa0667680:intron 40.0%
TCGTTAGTGTGATATCCACA+AGG - chr4_4:8260992-8261011 Msa0667680:CDS 40.0%
CGTTAGTGTGATATCCACAA+GGG - chr4_4:8260993-8261012 Msa0667680:CDS 40.0%
CTTCAATTCAGGGAGAAATG+GGG + chr4_4:8261102-8261121 None:intergenic 40.0%
CCTTCAATTCAGGGAGAAAT+GGG + chr4_4:8261103-8261122 None:intergenic 40.0%
TCCTTCAATTCAGGGAGAAA+TGG + chr4_4:8261104-8261123 None:intergenic 40.0%
CTGGATTGTCCTTCAATTCA+GGG + chr4_4:8261112-8261131 None:intergenic 40.0%
AATGATCTCACAACTTCCTG+AGG - chr4_4:8261147-8261166 Msa0667680:CDS 40.0%
TCCAACTTCCAAGTTGCTAT+TGG - chr4_4:8261387-8261406 Msa0667680:intron 40.0%
! CCAACTTCCAAGTTGCTATT+GGG - chr4_4:8261388-8261407 Msa0667680:intron 40.0%
ATTTCCACAATAGGACATCC+AGG + chr4_4:8261544-8261563 None:intergenic 40.0%
! GGGCTGCTTTCTCAAAAATA+AGG + chr4_4:8261607-8261626 None:intergenic 40.0%
TAGTTCCCTCGTTGAAGAAT+TGG - chr4_4:8261940-8261959 Msa0667680:CDS 40.0%
CTTGAGGGACATCTATGTTT+GGG - chr4_4:8262114-8262133 Msa0667680:intron 40.0%
CAAATCCCAGCAAAGAATGT+TGG + chr4_4:8262377-8262396 None:intergenic 40.0%
CAACATTCTTTGCTGGGATT+TGG - chr4_4:8262375-8262394 Msa0667680:intron 40.0%
AGTATTTGGAAGGAGTGGAT+CGG - chr4_4:8262482-8262501 Msa0667680:intron 40.0%
TATGGTATGACAGGAGAATG+CGG - chr4_4:8262662-8262681 Msa0667680:intron 40.0%
TTATAGTTGCTGTGCGACAA+GGG - chr4_4:8262700-8262719 Msa0667680:intron 40.0%
CGACCTTCCTATCTTTCAAT+AGG - chr4_4:8262964-8262983 Msa0667680:intron 40.0%
GGTCCTATTGAAAGATAGGA+AGG + chr4_4:8262970-8262989 None:intergenic 40.0%
GTGTGGTCCTATTGAAAGAT+AGG + chr4_4:8262974-8262993 None:intergenic 40.0%
GTTCAATACACATTGCAGCT+TGG + chr4_4:8263282-8263301 None:intergenic 40.0%
! GTTGGTGTTCTCGCTTTACA+AGG - chr4_4:8258267-8258286 Msa0667680:three_prime_UTR 45.0%
TTCACCACCAGGGATGATTA+AGG + chr4_4:8258478-8258497 None:intergenic 45.0%
TTCAGCGAGTTTAGCCATAG+TGG + chr4_4:8258505-8258524 None:intergenic 45.0%
CATTTGCACAAACTCTCGCA+AGG + chr4_4:8259220-8259239 None:intergenic 45.0%
CTTGCGAGAGTTTGTGCAAA+TGG - chr4_4:8259218-8259237 Msa0667680:intron 45.0%
TGCAAATGGGAAAGCCAGTT+TGG - chr4_4:8259232-8259251 Msa0667680:intron 45.0%
GCAAATGGGAAAGCCAGTTT+GGG - chr4_4:8259233-8259252 Msa0667680:intron 45.0%
CAAATGGGAAAGCCAGTTTG+GGG - chr4_4:8259234-8259253 Msa0667680:intron 45.0%
CAGGAAAATTAGTCCTGCAC+AGG + chr4_4:8259262-8259281 None:intergenic 45.0%
! CTGTGCAGGACTAATTTTCC+TGG - chr4_4:8259260-8259279 Msa0667680:intron 45.0%
!! CAACCCACCTGTAGCTTTAT+CGG + chr4_4:8259286-8259305 None:intergenic 45.0%
! AGCCACAACATCGTGGATTT+TGG - chr4_4:8259349-8259368 Msa0667680:intron 45.0%
! GCCACAACATCGTGGATTTT+GGG - chr4_4:8259350-8259369 Msa0667680:intron 45.0%
ACCCAAAATCCACGATGTTG+TGG + chr4_4:8259354-8259373 None:intergenic 45.0%
! CGTAATTTCAAGTGCGACTG+TGG - chr4_4:8259449-8259468 Msa0667680:intron 45.0%
! CTCTTCTCTTTTCCACCCTT+AGG - chr4_4:8259495-8259514 Msa0667680:intron 45.0%
! TCTCTTTTCCACCCTTAGGT+TGG - chr4_4:8259499-8259518 Msa0667680:intron 45.0%
! CTCTTTTCCACCCTTAGGTT+GGG - chr4_4:8259500-8259519 Msa0667680:intron 45.0%
ATTTCAGGACAGAAGACTGG+TGG - chr4_4:8259609-8259628 Msa0667680:intron 45.0%
! ACTGGTGGACAAGAACTTGT+TGG - chr4_4:8259624-8259643 Msa0667680:intron 45.0%
! TTGACGTGGCTTCTTTTGTG+GGG - chr4_4:8259703-8259722 Msa0667680:intron 45.0%
GAACTTTGTGGGACCTAAGT+GGG - chr4_4:8260022-8260041 Msa0667680:intron 45.0%
CGCAGTTGTATGCACAAGTT+CGG - chr4_4:8260071-8260090 Msa0667680:intron 45.0%
GCAGTTGTATGCACAAGTTC+GGG - chr4_4:8260072-8260091 Msa0667680:intron 45.0%
TCTAACTTAAACAAGGCCCC+AGG + chr4_4:8260104-8260123 None:intergenic 45.0%
ACCTCATAGATGAGATGCAC+GGG + chr4_4:8260132-8260151 None:intergenic 45.0%
GACCTCATAGATGAGATGCA+CGG + chr4_4:8260133-8260152 None:intergenic 45.0%
GCATCTCATCTATGAGGTCT+TGG - chr4_4:8260134-8260153 Msa0667680:intron 45.0%
AGAAGAGGCTATGTGAAGGA+TGG - chr4_4:8260239-8260258 Msa0667680:intron 45.0%
GAAGAGGCTATGTGAAGGAT+GGG - chr4_4:8260240-8260259 Msa0667680:intron 45.0%
CTGTACATCCAGTCCACTAT+AGG - chr4_4:8260270-8260289 Msa0667680:intron 45.0%
TCCAGTCCACTATAGGTCAT+AGG - chr4_4:8260277-8260296 Msa0667680:intron 45.0%
!! TCCTATGACCTATAGTGGAC+TGG + chr4_4:8260281-8260300 None:intergenic 45.0%
GGGCACGAATAAAAACTCCA+CGG + chr4_4:8260482-8260501 None:intergenic 45.0%
CCCTACGTCAATAATTGCTG+GGG + chr4_4:8260502-8260521 None:intergenic 45.0%
CCCCAGCAATTATTGACGTA+GGG - chr4_4:8260499-8260518 Msa0667680:intron 45.0%
GCCCTACGTCAATAATTGCT+GGG + chr4_4:8260503-8260522 None:intergenic 45.0%
TCAGCTAGGACTTGAACTTC+TGG + chr4_4:8260525-8260544 None:intergenic 45.0%
GGGCTTAATATCAACCCTTG+TGG + chr4_4:8261010-8261029 None:intergenic 45.0%
!! CAAGGGTTGATATTAAGCCC+TGG - chr4_4:8261010-8261029 Msa0667680:CDS 45.0%
! GGTTGATATTAAGCCCTGGT+AGG - chr4_4:8261014-8261033 Msa0667680:CDS 45.0%
TGATATTAAGCCCTGGTAGG+AGG - chr4_4:8261017-8261036 Msa0667680:CDS 45.0%
GATATTAAGCCCTGGTAGGA+GGG - chr4_4:8261018-8261037 Msa0667680:CDS 45.0%
ATATTAAGCCCTGGTAGGAG+GGG - chr4_4:8261019-8261038 Msa0667680:CDS 45.0%
AGAATAATCCCCTCCTACCA+GGG + chr4_4:8261030-8261049 None:intergenic 45.0%
TAGAATAATCCCCTCCTACC+AGG + chr4_4:8261031-8261050 None:intergenic 45.0%
CCCATTTCTCCCTGAATTGA+AGG - chr4_4:8261100-8261119 Msa0667680:CDS 45.0%
CCTGGATTGTCCTTCAATTC+AGG + chr4_4:8261113-8261132 None:intergenic 45.0%
CCTGAATTGAAGGACAATCC+AGG - chr4_4:8261110-8261129 Msa0667680:CDS 45.0%
CTAACTGCAATAGCAGAGGT+AGG + chr4_4:8261239-8261258 None:intergenic 45.0%
CTCACTAACTGCAATAGCAG+AGG + chr4_4:8261243-8261262 None:intergenic 45.0%
CCCAATAGCAACTTGGAAGT+TGG + chr4_4:8261391-8261410 None:intergenic 45.0%
TTTGCCTGGATGTCCTATTG+TGG - chr4_4:8261537-8261556 Msa0667680:intron 45.0%
TACTGACATCGATCGGAACA+TGG - chr4_4:8261735-8261754 Msa0667680:intron 45.0%
ACTGACATCGATCGGAACAT+GGG - chr4_4:8261736-8261755 Msa0667680:intron 45.0%
GCTTGAGGGACATCTATGTT+TGG - chr4_4:8262113-8262132 Msa0667680:intron 45.0%
GCAAAGAATGTTGGGAAGGA+GGG + chr4_4:8262368-8262387 None:intergenic 45.0%
AGCAAAGAATGTTGGGAAGG+AGG + chr4_4:8262369-8262388 None:intergenic 45.0%
TCCTTCCCAACATTCTTTGC+TGG - chr4_4:8262368-8262387 Msa0667680:intron 45.0%
CCTTCCCAACATTCTTTGCT+GGG - chr4_4:8262369-8262388 Msa0667680:intron 45.0%
! GTCTTATTGAGAGGAAGGAG+AGG + chr4_4:8262403-8262422 None:intergenic 45.0%
CAAGTAGGAGAGCAGACATA+TGG + chr4_4:8262511-8262530 None:intergenic 45.0%
GTCAGTCCGTGTTACGTATA+TGG + chr4_4:8262562-8262581 None:intergenic 45.0%
GTTATAGTTGCTGTGCGACA+AGG - chr4_4:8262699-8262718 Msa0667680:intron 45.0%
TAGTGGTGCTTTCACCACCA+GGG + chr4_4:8258488-8258507 None:intergenic 50.0%
ATAGTGGTGCTTTCACCACC+AGG + chr4_4:8258489-8258508 None:intergenic 50.0%
!! TGGTGGTGAAAGCACCACTA+TGG - chr4_4:8258488-8258507 Msa0667680:three_prime_UTR 50.0%
TTCCTGGCCGATAAAGCTAC+AGG - chr4_4:8259276-8259295 Msa0667680:intron 50.0%
TGGCCGATAAAGCTACAGGT+GGG - chr4_4:8259280-8259299 Msa0667680:intron 50.0%
TCTCAAACCCAACCTAAGGG+TGG + chr4_4:8259510-8259529 None:intergenic 50.0%
!! GGTGGACAAGAACTTGTTGG+TGG - chr4_4:8259627-8259646 Msa0667680:intron 50.0%
GACTTGATTGCACTGTGCAC+AGG - chr4_4:8259649-8259668 Msa0667680:intron 50.0%
CAGGAATTTCTTTGGCAGCC+AGG - chr4_4:8259668-8259687 Msa0667680:intron 50.0%
CGAACTTTGTGGGACCTAAG+TGG - chr4_4:8260021-8260040 Msa0667680:intron 50.0%
! TGAGTGTTTTCCGCCCACTT+AGG + chr4_4:8260038-8260057 None:intergenic 50.0%
! ACAAGTTCGGGTTCGAACCT+GGG - chr4_4:8260084-8260103 Msa0667680:intron 50.0%
ACCCGTGCATCTCATCTATG+AGG - chr4_4:8260128-8260147 Msa0667680:intron 50.0%
TGTTTCAGGACCACCTTCCT+TGG + chr4_4:8260457-8260476 None:intergenic 50.0%
GCCCCAGCAATTATTGACGT+AGG - chr4_4:8260498-8260517 Msa0667680:intron 50.0%
GGCCCTACGTCAATAATTGC+TGG + chr4_4:8260504-8260523 None:intergenic 50.0%
TCCTGTACCTTCTGTCAGAG+TGG - chr4_4:8260548-8260567 Msa0667680:intron 50.0%
GAGCACGGTTGAATACATGC+TGG - chr4_4:8260869-8260888 Msa0667680:intron 50.0%
AAAAACCAACTCGGCAAGCC+TGG + chr4_4:8261307-8261326 None:intergenic 50.0%
TGGTACATGTGGCTGCTACT+GGG + chr4_4:8262075-8262094 None:intergenic 50.0%
ATGGTACATGTGGCTGCTAC+TGG + chr4_4:8262076-8262095 None:intergenic 50.0%
GGGACATCTATGTTTGGGTC+AGG - chr4_4:8262119-8262138 Msa0667680:intron 50.0%
CCCAGCAAAGAATGTTGGGA+AGG + chr4_4:8262372-8262391 None:intergenic 50.0%
! GACTGACTTCCTATTGCCAC+TGG - chr4_4:8262575-8262594 Msa0667680:intron 50.0%
TGTGCGACAAGGGAACATAC+TGG - chr4_4:8262710-8262729 Msa0667680:intron 50.0%
TGCACAAACTCTCGCAAGGC+CGG + chr4_4:8259216-8259235 None:intergenic 55.0%
!! CACCTGTAGCTTTATCGGCC+AGG + chr4_4:8259281-8259300 None:intergenic 55.0%
CTGGCCGATAAAGCTACAGG+TGG - chr4_4:8259279-8259298 Msa0667680:intron 55.0%
CGGTTACAGCCACAACATCG+TGG - chr4_4:8259342-8259361 Msa0667680:intron 55.0%
TGCTGCGTGCGGAGGATATT+CGG + chr4_4:8259985-8260004 None:intergenic 55.0%
CTTTGTGGGACCTAAGTGGG+CGG - chr4_4:8260025-8260044 Msa0667680:intron 55.0%
! CACAAGTTCGGGTTCGAACC+TGG - chr4_4:8260083-8260102 Msa0667680:intron 55.0%
! CAAGTTCGGGTTCGAACCTG+GGG - chr4_4:8260085-8260104 Msa0667680:intron 55.0%
AGTACCTGAGCTCGTCTCCA+AGG - chr4_4:8260437-8260456 Msa0667680:intron 55.0%
GGTGGTCCTGAAACATTCCG+TGG - chr4_4:8260462-8260481 Msa0667680:intron 55.0%
! GCCACTCTGACAGAAGGTAC+AGG + chr4_4:8260552-8260571 None:intergenic 55.0%
GAACTCGCCACTCTGACAGA+AGG + chr4_4:8260558-8260577 None:intergenic 55.0%
TGCTGTCAACAAGCCCGAGA+AGG + chr4_4:8260914-8260933 None:intergenic 55.0%
GGGTGGAATAGATCAGCCTC+AGG + chr4_4:8261166-8261185 None:intergenic 55.0%
ACTAACCAGGCTTGCCGAGT+TGG - chr4_4:8261299-8261318 Msa0667680:intron 55.0%
GTTGGAAGCAATACAGCCCG+TGG + chr4_4:8261373-8261392 None:intergenic 55.0%
ACATCGATCGGAACATGGGC+AGG - chr4_4:8261740-8261759 Msa0667680:intron 55.0%
GGGAAATGTGACCCGAGAAG+AGG - chr4_4:8262883-8262902 Msa0667680:intron 55.0%
TGCTGGAACAACGCTACTCG+AGG + chr4_4:8262909-8262928 None:intergenic 55.0%
CCTGCACAGGTTCCCCAAAC+TGG + chr4_4:8259249-8259268 None:intergenic 60.0%
CCAGTTTGGGGAACCTGTGC+AGG - chr4_4:8259246-8259265 Msa0667680:intron 60.0%
ATATCCTCCGCACGCAGCAG+CGG - chr4_4:8259986-8260005 Msa0667680:intron 60.0%
TTAGTCTCCGCTGCTGCGTG+CGG + chr4_4:8259996-8260015 None:intergenic 60.0%
CCTTCCTTGGAGACGAGCTC+AGG + chr4_4:8260444-8260463 None:intergenic 60.0%
CCTGAGCTCGTCTCCAAGGA+AGG - chr4_4:8260441-8260460 Msa0667680:intron 60.0%
GAGCTCGTCTCCAAGGAAGG+TGG - chr4_4:8260444-8260463 Msa0667680:intron 60.0%
GCTACTCGAGGCCTCTTCTC+GGG + chr4_4:8262897-8262916 None:intergenic 60.0%
CGCTACTCGAGGCCTCTTCT+CGG + chr4_4:8262898-8262917 None:intergenic 60.0%
GTCTCCGCTGCTGCGTGCGG+AGG + chr4_4:8259993-8260012 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 8258258 8263327 8258258 ID=Msa0667680;Name=Msa0667680
chr4_4 mRNA 8258258 8263327 8258258 ID=Msa0667680-mRNA-1;Parent=Msa0667680;Name=Msa0667680-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.83|0.85|1|1|1|7|342|244
chr4_4 exon 8258258 8258723 8258258 ID=Msa0667680-mRNA-1:exon:2686;Parent=Msa0667680-mRNA-1
chr4_4 exon 8258813 8258910 8258813 ID=Msa0667680-mRNA-1:exon:2685;Parent=Msa0667680-mRNA-1
chr4_4 exon 8260983 8261174 8260983 ID=Msa0667680-mRNA-1:exon:2684;Parent=Msa0667680-mRNA-1
chr4_4 exon 8261896 8261969 8261896 ID=Msa0667680-mRNA-1:exon:2683;Parent=Msa0667680-mRNA-1
chr4_4 exon 8262288 8262375 8262288 ID=Msa0667680-mRNA-1:exon:2682;Parent=Msa0667680-mRNA-1
chr4_4 exon 8263049 8263176 8263049 ID=Msa0667680-mRNA-1:exon:2681;Parent=Msa0667680-mRNA-1
chr4_4 exon 8263297 8263327 8263297 ID=Msa0667680-mRNA-1:exon:2680;Parent=Msa0667680-mRNA-1
chr4_4 CDS 8263297 8263327 8263297 ID=Msa0667680-mRNA-1:cds;Parent=Msa0667680-mRNA-1
chr4_4 CDS 8263049 8263176 8263049 ID=Msa0667680-mRNA-1:cds;Parent=Msa0667680-mRNA-1
chr4_4 CDS 8262288 8262375 8262288 ID=Msa0667680-mRNA-1:cds;Parent=Msa0667680-mRNA-1
chr4_4 CDS 8261896 8261969 8261896 ID=Msa0667680-mRNA-1:cds;Parent=Msa0667680-mRNA-1
chr4_4 CDS 8260983 8261174 8260983 ID=Msa0667680-mRNA-1:cds;Parent=Msa0667680-mRNA-1
chr4_4 CDS 8258813 8258910 8258813 ID=Msa0667680-mRNA-1:cds;Parent=Msa0667680-mRNA-1
chr4_4 CDS 8258600 8258723 8258600 ID=Msa0667680-mRNA-1:cds;Parent=Msa0667680-mRNA-1
chr4_4 three_prime_UTR 8258258 8258599 8258258 ID=Msa0667680-mRNA-1:three_prime_utr;Parent=Msa0667680-mRNA-1
Gene Sequence

>Msa0667680

ATGGCGGTGGTTGGTGTTCTCGCTTTACAAGTTCTAAGAAGATTGGGTGTGAAAGGTGTCGAGATTCGAAAACCAGAACAGCTTCTCACCATTAATTCCTTAATCATCCCTGGTGGTGAAAGCACCACTATGGCTAAACTCGCTGAATATTTCAACCTGTTTCCGGCCTTGCGAGAGTTTGTGCAAATGGGAAAGCCAGTTTGGGGAACCTGTGCAGGACTAATTTTCCTGGCCGATAAAGCTACAGGACAGAAGACTGGTGGACAAGAACTTGTTGGTGGACTTGATTGCACTGTGCACAGGAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAAACGGAGCTTGCAGTACCTGAGCTCGTCTCCAAGGAAGGTGGTCCTGAAACATTCCGTGGAGTTTTTATTCGTGCCCCAGCAATTATTGACGTAGGGCCAGAAGTTCAAGTCCTAGCTGATTATCCTGTACCTTCTGTCAGAGTGGCGAGTTCTGATTCCTCTGTTGAAGATAAAAAGGAGAATGCGGATGAAAAAAGCAAAGTTATAGTTGCTGTGCGACAAGGGAACATACTGGCGACTGCTTTTCATCCTGAATTGACAGCTGATACTCGATGGCATAGTTATTTCTTGAAGATGGGAAATGTGACCCGAGAAGAGGCCTCGAGTAGCGTTGTTCCAGCAGAAGTGAGTACAAATAATAAGCTACAATCACAGAACGACCTTCCTATCTTTCAATAG

Protein sequence

>Msa0667680

MAVVGVLALQVLRRLGVKGVEIRKPEQLLTINSLIIPGGESTTMAKLAEYFNLFPALREFVQMGKPVWGTCAGLIFLADKATGQKTGGQELVGGLDCTVHRNFFGSQIQSFETELAVPELVSKEGGPETFRGVFIRAPAIIDVGPEVQVLADYPVPSVRVASSDSSVEDKKENADEKSKVIVAVRQGNILATAFHPELTADTRWHSYFLKMGNVTREEASSSVVPAEVSTNNKLQSQNDLPIFQ*