AlfalfaGEDB | Msa0474230

M. sativa cultivar zhongmu-4 / Msa0474230

KEGG: K00889
GO: GO:0003674 GO:0003779 GO:0003785 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008092 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016307 GO:0016308 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0030258 GO:0044237 GO:0044238 GO:0044255 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0051015 GO:0071704 GO:0071944
PFAM: PF02493.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474230	XP_013461615.1	96.620	710	16	4	1	707	1	705	0.0	1400

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474230	sp\|Q56YP2\|PI5K1_ARATH	63.807	746	217	11	4	706	16	751	0.0	946

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474230	A0A072VBT9	96.620	710	16	4	1	707	1	705	0.0	1400

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028640	Msa0474230	0.806463	8.128487e-50	-8.615850e-47
Msa0095900	Msa0474230	0.805821	1.109362e-49	-8.615850e-47
Msa0136650	Msa0474230	0.807971	3.894294e-50	-8.615850e-47
Msa0261340	Msa0474230	0.824418	8.160692e-54	-8.615850e-47
Msa0292400	Msa0474230	0.812522	4.064094e-51	-8.615850e-47
Msa0378540	Msa0474230	0.868740	5.214885e-66	-8.615850e-47
Msa0380620	Msa0474230	0.806705	7.226471e-50	-8.615850e-47
Msa0410650	Msa0474230	0.813201	2.885328e-51	-8.615850e-47
Msa0417880	Msa0474230	0.803831	2.888821e-49	-8.615850e-47
Msa0422850	Msa0474230	0.806201	9.229667e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0474230	MtrunA17_Chr3g0131001	96.620	710	16	4	1	707	1	705	0.0	1400
Msa0474230	MtrunA17_Chr8g0385201	74.443	673	143	11	39	707	20	667	0.0	979
Msa0474230	MtrunA17_Chr5g0424301	65.473	698	197	8	41	706	47	732	0.0	909
Msa0474230	MtrunA17_Chr3g0115111	62.672	726	211	11	28	707	21	732	0.0	884
Msa0474230	MtrunA17_Chr3g0082501	52.514	716	269	11	48	706	59	760	0.0	696
Msa0474230	MtrunA17_Chr8g0353121	53.305	711	272	10	48	706	48	750	0.0	694
Msa0474230	MtrunA17_Chr1g0171491	49.799	745	281	13	48	706	56	793	0.0	691
Msa0474230	MtrunA17_Chr7g0256301	49.157	771	290	13	11	706	48	791	0.0	686
Msa0474230	MtrunA17_Chr1g0180261	41.272	802	291	14	49	703	47	815	0.0	556
Msa0474230	MtrunA17_Chr8g0380791	37.662	770	354	18	49	705	9	765	2.82e-155	468

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0474230	AT1G21980.1	63.807	746	217	11	4	706	16	751	946
Msa0474230	AT1G77740.2	66.950	705	184	9	40	706	60	753	942
Msa0474230	AT1G77740.1	66.950	705	184	9	40	706	60	753	942
Msa0474230	AT2G26420.1	59.234	731	248	9	1	707	1	705	844
Msa0474230	AT2G26420.2	58.672	738	255	9	1	707	1	719	843
Msa0474230	AT2G26420.3	58.672	738	255	9	1	707	1	719	843
Msa0474230	AT3G07960.1	53.267	704	273	11	48	706	22	714	718
Msa0474230	AT2G41210.1	48.977	733	274	13	48	706	65	771	679
Msa0474230	AT3G56960.2	49.932	739	263	19	48	706	67	778	666
Msa0474230	AT3G56960.1	49.932	739	263	19	48	706	67	778	666

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Find 279 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTCCAGAACCTTCCA+TGG	0.533472	3_3:+77096808	None:intergenic
AAAGTTTGAAGGAGTAGAGG+AGG	0.561682	3_3:+77097241	None:intergenic
AAATCCACCGATTGATGGGG+AGG	0.615911	3_3:+77095937	None:intergenic
AAATGTGAATGCATGTGGAG+TGG	0.667107	3_3:-77092966	Msa0474230:three_prime_UTR
AACGATGGATGCATGTACCA+AGG	0.678792	3_3:-77096917	Msa0474230:CDS
AAGAATGGGAATCGTTATGT+GGG	0.637878	3_3:-77096572	Msa0474230:CDS
AAGAGCGCATACCGGCCTAT+GGG	0.618644	3_3:+77094662	None:intergenic
AAGGTTCTTGGGTTTCTGAT+AGG	0.451720	3_3:-77096760	Msa0474230:CDS
AATATCCTTACGGAGTTTAT+CGG	0.347395	3_3:+77095134	None:intergenic
AATGGAAGAAAGGTAAAGCA+TGG	0.560447	3_3:-77096892	Msa0474230:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACTAATTCCACGTGAAATT+TGG	+	chr3_3:77092380-77092399	None:intergenic	30.0%
GTGATACTTATAAAGGTTCT+TGG	-	chr3_3:77092984-77093003	Msa0474230:three_prime_UTR	30.0%
TGTTTCTTTGTTGGGTATTT+AGG	-	chr3_3:77093971-77093990	Msa0474230:intron	30.0%
ACAAATAGCAAGCATGTAAT+CGG	+	chr3_3:77094028-77094047	None:intergenic	30.0%
GCCTTAATTAATTACTAGAC+TGG	-	chr3_3:77094177-77094196	Msa0474230:intron	30.0%
AATTTCACCTTGCTCAATAT+AGG	+	chr3_3:77094237-77094256	None:intergenic	30.0%
ACAGACTCGATTTATTGTAA+TGG	-	chr3_3:77094527-77094546	Msa0474230:intron	30.0%
CAGACTCGATTTATTGTAAT+GGG	-	chr3_3:77094528-77094547	Msa0474230:intron	30.0%
AATATCCTTACGGAGTTTAT+CGG	+	chr3_3:77094625-77094644	None:intergenic	30.0%
TAGTCTCATCAATATCCTTA+CGG	+	chr3_3:77094635-77094654	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	77092277	77097501	77092277	ID=Msa0474230;Name=Msa0474230
chr3_3	mRNA	77092277	77097501	77092277	ID=Msa0474230-mRNA-1;Parent=Msa0474230;Name=Msa0474230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=337\|1\|1\|1\|1\|1\|8\|1115\|707
chr3_3	exon	77092277	77093698	77092277	ID=Msa0474230-mRNA-1:exon:20520;Parent=Msa0474230-mRNA-1
chr3_3	exon	77094674	77094731	77094674	ID=Msa0474230-mRNA-1:exon:20519;Parent=Msa0474230-mRNA-1
chr3_3	exon	77094830	77094960	77094830	ID=Msa0474230-mRNA-1:exon:20518;Parent=Msa0474230-mRNA-1
chr3_3	exon	77095054	77095247	77095054	ID=Msa0474230-mRNA-1:exon:20517;Parent=Msa0474230-mRNA-1
chr3_3	exon	77095344	77095454	77095344	ID=Msa0474230-mRNA-1:exon:20516;Parent=Msa0474230-mRNA-1
chr3_3	exon	77095620	77095785	77095620	ID=Msa0474230-mRNA-1:exon:20515;Parent=Msa0474230-mRNA-1
chr3_3	exon	77095904	77096068	77095904	ID=Msa0474230-mRNA-1:exon:20514;Parent=Msa0474230-mRNA-1
chr3_3	exon	77096173	77097501	77096173	ID=Msa0474230-mRNA-1:exon:20513;Parent=Msa0474230-mRNA-1
chr3_3	five_prime_UTR	77097165	77097501	77097165	ID=Msa0474230-mRNA-1:five_prime_utr;Parent=Msa0474230-mRNA-1
chr3_3	CDS	77096173	77097164	77096173	ID=Msa0474230-mRNA-1:cds;Parent=Msa0474230-mRNA-1
chr3_3	CDS	77095904	77096068	77095904	ID=Msa0474230-mRNA-1:cds;Parent=Msa0474230-mRNA-1
chr3_3	CDS	77095620	77095785	77095620	ID=Msa0474230-mRNA-1:cds;Parent=Msa0474230-mRNA-1
chr3_3	CDS	77095344	77095454	77095344	ID=Msa0474230-mRNA-1:cds;Parent=Msa0474230-mRNA-1
chr3_3	CDS	77095054	77095247	77095054	ID=Msa0474230-mRNA-1:cds;Parent=Msa0474230-mRNA-1
chr3_3	CDS	77094830	77094960	77094830	ID=Msa0474230-mRNA-1:cds;Parent=Msa0474230-mRNA-1
chr3_3	CDS	77094674	77094731	77094674	ID=Msa0474230-mRNA-1:cds;Parent=Msa0474230-mRNA-1
chr3_3	CDS	77093392	77093698	77093392	ID=Msa0474230-mRNA-1:cds;Parent=Msa0474230-mRNA-1
chr3_3	three_prime_UTR	77092277	77093391	77092277	ID=Msa0474230-mRNA-1:three_prime_utr;Parent=Msa0474230-mRNA-1

Gene Sequence

>Msa0474230

ATGCAAGAAACATTATTAACTATTTCGGAGCACCACCACCAAAACACAAATGCAAAGAAAAACGAGGAAATGGAAGTAGTAATAGTATCATCATCACCATGCCGTCGACCACCGCGAACACGGCGCGTGTCACCGACGCCAGTAGAAAAACACCTTCCAAACGGCGACGTATACAGTGGAAGTTTATCAGGAAACACACCACACGGCAAAGGTAAATACGTATGGAACGATGGATGCATGTACCAAGGAGAATGGAAGAAAGGTAAAGCATGGGGGAAAGGGAAATTCTCATGGCCATCAGGAGCTACTTATGAAGGTGATTTTATTTCAGGGTCCATGGAAGGTTCTGGAACTTTTGTTGGTGTGGAAGGTGATACTTATAAAGGTTCTTGGGTTTCTGATAGGAAACATGGGTTTGGTGAGAAATGTTATGCTAATGGTGATGTGTATGAGGGTTGGTGGAGGTACAATTTGCAAGATGGGGAAGGGAGGTATATGTGGAGGAATGGGAATGAGTATGTTGGTGAATGGAAATGTGGTGCTATATGTGGAAATGGTGTTTTGATTTGGAAGAATGGGAATCGTTATGTGGGTTGTTGGGAGAATGGTGTGCCAAAAGGGAAAGGTGTTTTTACGTGGCGCGATGGGAGTGTTTCGTCCGGGAATTGGGGGAATGATGAGAAGAAGAGGGTTTCTGTGAGTGTGGATGATGGTTCTAAGAGTGTGGTTTTTCCTAGGATTTGTATTTGGGAGCTTGATGGGGAAGCTGGTGATATTACTTGTGATATTGTTGATAATGTGGAAGCTTGTATGTTTTATAGAGATGGAAGTGAATCAGAGATTGGTGGTGTTGGTGTTGGTGATGTAGGGTATGGACATTCACATAAGAGTCCTTGTTATTCGATCGATGGGGATGTTAAGAAACCTGGTTATACTGTTTGTAAGGGACATAAGAACTATGATTTGATTCTTAATCTTCAATTGGGTATTAGATATTGTGTTGGGAAGCATGCTTCGGTGCCTCGAGAGCTTAGGTCAGGAGATTTTGATCCAAAGGAGAAATTCTGGACAAGGTTTCCTCCAGAAGGTTCCAAGTTTACGCCTCCCCATCAATCGGTGGATTTTAGATGGAAAGACTACTGTCCCGTGGTGTTCAGGCATTTGAGGGAATTATTTGCGATTGATCCTGCCGATTACATGCTTGCTATTTGTGGCAATGATACATTGAGGGAAATGTCTTCTCCTGGAAAAAGTGGAAGCTTCTTTTACCTTACTCAAGATGACCGATTTGTAATCAAAACCTTGAAGAAGTCTGAAGTCAAGGTGCTCATCAGGATGCTTCCCAGTTACTATCAACATGTTTCTCAGTACAAGAACTCGTTGGTTACGAAATTCCTGGGAGTTCATTGTGTCAAACCTATTGGAGGCCAAAAGACTCGATTTATTGTAATGGGCAATGTGTTTTGTTCGGAGTATCAAATTCATAAGCGATTTGACCTCAAAGGTTCATCTCATGGTCGGACAACCGATAAACTCCGTAAGGATATTGATGAGACTACTACTCTTAAAGACCTTGATCTTAGTTTTGCCTTTCGCCTGGAGCAGTCTTGGTTTCAAGAGCTAAAATGGCAACTTGATAGAGACTGTGAGTTCCTGGAAGCAGAGGGAATAATGGACTACAGTTTTCTCATTGGCCTTCATTTTCGTGATGATTACTCATCGGATGAAATGAAAAGTTCACCTAATGAATTGTGTTCTGGCAAGAGAGACATGCAAAATGATGACACTCAGGACACGAGATGGATACCCATAGGCCGAGGACCTCTAATCCGGCTGGGAATTAACATGCCAGCAAGAGCGGAGAGAGTGTGTAAAGCTGGATTGGATCAGCAGCAAACTGGAAGTAGCAAATCTACCCCTTCAGAGAGTAGCGGTGAGATCTCTGATGTAATCCTTTATTTTGGCATCATTGACATTCTCCAAGATTATGATATTAGCAAAAAGCTAGAGCATGCATACAAGTCACTACAAGTGGACCCCACATCCATCTCAGCCGTTGATCCCAAGCTATATTCCAAAAGGTTTAGGGATTTCATACACAGAATCTTTGTGGAGGACAAATAA

Protein sequence

>Msa0474230

MQETLLTISEHHHQNTNAKKNEEMEVVIVSSSPCRRPPRTRRVSPTPVEKHLPNGDVYSGSLSGNTPHGKGKYVWNDGCMYQGEWKKGKAWGKGKFSWPSGATYEGDFISGSMEGSGTFVGVEGDTYKGSWVSDRKHGFGEKCYANGDVYEGWWRYNLQDGEGRYMWRNGNEYVGEWKCGAICGNGVLIWKNGNRYVGCWENGVPKGKGVFTWRDGSVSSGNWGNDEKKRVSVSVDDGSKSVVFPRICIWELDGEAGDITCDIVDNVEACMFYRDGSESEIGGVGVGDVGYGHSHKSPCYSIDGDVKKPGYTVCKGHKNYDLILNLQLGIRYCVGKHASVPRELRSGDFDPKEKFWTRFPPEGSKFTPPHQSVDFRWKDYCPVVFRHLRELFAIDPADYMLAICGNDTLREMSSPGKSGSFFYLTQDDRFVIKTLKKSEVKVLIRMLPSYYQHVSQYKNSLVTKFLGVHCVKPIGGQKTRFIVMGNVFCSEYQIHKRFDLKGSSHGRTTDKLRKDIDETTTLKDLDLSFAFRLEQSWFQELKWQLDRDCEFLEAEGIMDYSFLIGLHFRDDYSSDEMKSSPNELCSGKRDMQNDDTQDTRWIPIGRGPLIRLGINMPARAERVCKAGLDQQQTGSSKSTPSESSGEISDVILYFGIIDILQDYDISKKLEHAYKSLQVDPTSISAVDPKLYSKRFRDFIHRIFVEDK*