Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391180 | RHN61905.1 | 93.284 | 134 | 9 | 0 | 1 | 134 | 1326 | 1459 | 3.01e-77 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391180 | A0A396IDV6 | 93.284 | 134 | 9 | 0 | 1 | 134 | 1326 | 1459 | 1.44e-77 | 260 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384800 | Msa0391180 | 0.816130 | 6.481813e-52 | -8.615850e-47 |
| Msa0384890 | Msa0391180 | 0.811139 | 8.128629e-51 | -8.615850e-47 |
| Msa0391180 | Msa0436780 | 0.800039 | 1.737141e-48 | -8.615850e-47 |
| Msa0391180 | Msa0450000 | 0.809558 | 1.783059e-50 | -8.615850e-47 |
| Msa0391180 | Msa0452900 | 0.806378 | 8.469228e-50 | -8.615850e-47 |
| Msa0391180 | Msa0479340 | 0.808042 | 3.761060e-50 | -8.615850e-47 |
| Msa0391180 | Msa0506270 | 0.804355 | 2.247710e-49 | -8.615850e-47 |
| Msa0391180 | Msa0639610 | 0.806053 | 9.914577e-50 | -8.615850e-47 |
| Msa0391180 | Msa0726140 | 0.807448 | 5.031164e-50 | -8.615850e-47 |
| Msa0391180 | Msa0743810 | 0.805121 | 1.555042e-49 | -8.615850e-47 |
| Msa0391180 | Msa0748970 | 0.800771 | 1.232785e-48 | -8.615850e-47 |
| Msa0391180 | Msa0768290 | 0.800600 | 1.336000e-48 | -8.615850e-47 |
| Msa0391180 | Msa0768370 | 0.804903 | 1.727493e-49 | -8.615850e-47 |
| Msa0391180 | Msa0783160 | 0.803805 | 2.925799e-49 | -8.615850e-47 |
| Msa0391180 | Msa0846350 | 0.807492 | 4.922184e-50 | -8.615850e-47 |
| Msa0391180 | Msa0858980 | 0.809756 | 1.616676e-50 | -8.615850e-47 |
| Msa0391180 | Msa0907260 | 0.808955 | 2.401152e-50 | -8.615850e-47 |
| Msa0391180 | Msa0924050 | 0.825650 | 4.174477e-54 | -8.615850e-47 |
| Msa0391180 | Msa0958550 | 0.805610 | 1.228380e-49 | -8.615850e-47 |
| Msa0391180 | Msa0967280 | 0.812797 | 3.538007e-51 | -8.615850e-47 |
| Msa0391180 | Msa0989060 | 0.806904 | 6.556730e-50 | -8.615850e-47 |
| Msa0391180 | Msa0998690 | 0.804145 | 2.486169e-49 | -8.615850e-47 |
| Msa0391180 | Msa1044830 | 0.802157 | 6.409618e-49 | -8.615850e-47 |
| Msa0391180 | Msa1060840 | 0.800126 | 1.668002e-48 | -8.615850e-47 |
| Msa0391180 | Msa1100980 | 0.807134 | 5.862309e-50 | -8.615850e-47 |
| Msa0391180 | Msa1121480 | 0.802201 | 6.278558e-49 | -8.615850e-47 |
| Msa0391180 | Msa1248300 | 0.803110 | 4.076455e-49 | -8.615850e-47 |
| Msa0391180 | Msa1248370 | 0.802981 | 4.334410e-49 | -8.615850e-47 |
| Msa0391180 | Msa1404000 | 0.817356 | 3.441243e-52 | -8.615850e-47 |
| Msa0270520 | Msa0391180 | 0.813198 | 2.890549e-51 | -8.615850e-47 |
| Msa0360510 | Msa0391180 | 0.803168 | 3.964801e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391180 | MtrunA17_Chr4g0041691 | 93.284 | 134 | 9 | 0 | 1 | 134 | 1326 | 1459 | 2.77e-81 | 260 |
| Msa0391180 | MtrunA17_Chr6g0472401 | 49.020 | 102 | 52 | 0 | 2 | 103 | 846 | 947 | 2.95e-29 | 111 |
| Msa0391180 | MtrunA17_Chr5g0422121 | 45.161 | 93 | 49 | 2 | 10 | 101 | 1263 | 1354 | 8.10e-18 | 79.0 |
| Msa0391180 | MtrunA17_Chr2g0304391 | 43.011 | 93 | 51 | 2 | 10 | 101 | 2 | 93 | 1.72e-16 | 72.0 |
| Msa0391180 | MtrunA17_Chr2g0297751 | 36.190 | 105 | 62 | 3 | 10 | 113 | 42 | 142 | 7.56e-16 | 70.9 |
| Msa0391180 | MtrunA17_Chr4g0053141 | 39.785 | 93 | 54 | 2 | 10 | 101 | 1289 | 1380 | 2.41e-15 | 71.6 |
| Msa0391180 | MtrunA17_Chr1g0161271 | 37.755 | 98 | 56 | 3 | 17 | 113 | 4 | 97 | 2.69e-15 | 68.6 |
| Msa0391180 | MtrunA17_Chr3g0105561 | 38.710 | 93 | 55 | 2 | 10 | 101 | 880 | 971 | 4.53e-15 | 70.9 |
| Msa0391180 | MtrunA17_Chr4g0044301 | 38.710 | 93 | 55 | 2 | 10 | 101 | 1289 | 1380 | 6.03e-15 | 70.9 |
| Msa0391180 | MtrunA17_Chr8g0363431 | 38.710 | 93 | 55 | 2 | 10 | 101 | 1331 | 1422 | 1.11e-14 | 70.1 |
| Msa0391180 | MtrunA17_Chr4g0044311 | 35.238 | 105 | 63 | 3 | 10 | 113 | 42 | 142 | 3.70e-14 | 66.6 |
| Msa0391180 | MtrunA17_Chr4g0019441 | 36.559 | 93 | 57 | 2 | 10 | 101 | 1265 | 1356 | 2.23e-13 | 66.2 |
| Msa0391180 | MtrunA17_Chr2g0306251 | 37.634 | 93 | 56 | 2 | 10 | 101 | 1148 | 1239 | 1.04e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTATGTTCAATATCATTTC+CGG | 0.217516 | 3_2:+2686225 | None:intergenic |
| ACTTTGGCTATCACAGTAAA+TGG | 0.276296 | 3_2:+2686399 | None:intergenic |
| GACCCTTGAAAATCTTCAAT+TGG | 0.334047 | 3_2:+2686310 | None:intergenic |
| TTAAGAAAGAACAACAAATT+AGG | 0.337119 | 3_2:-2686438 | Msa0391180:CDS |
| GTAAGTGGTAAGGGAAAATA+TGG | 0.346547 | 3_2:+2686276 | None:intergenic |
| ATAAGCTACTGCTCCTACTT+TGG | 0.374664 | 3_2:+2686383 | None:intergenic |
| TTCCATTGTGGTAAGTGGTA+AGG | 0.432605 | 3_2:+2686266 | None:intergenic |
| CGGGTGAATACGAGCTGTCT+CGG | 0.446505 | 3_2:+2686347 | None:intergenic |
| ATCATTTCCGGCTGTATGAC+AGG | 0.454057 | 3_2:+2686237 | None:intergenic |
| AAATTAGGCATGAGGTACTT+TGG | 0.457059 | 3_2:-2686423 | Msa0391180:CDS |
| ACCCTTGAAAATCTTCAATT+GGG | 0.457115 | 3_2:+2686311 | None:intergenic |
| CCTTCTTCCATTGTGGTAAG+TGG | 0.470727 | 3_2:+2686261 | None:intergenic |
| AAATTTACTGAGAGCACAGC+AGG | 0.476229 | 3_2:-2686562 | Msa0391180:CDS |
| TCCATTGTGGTAAGTGGTAA+GGG | 0.499730 | 3_2:+2686267 | None:intergenic |
| AATTGGGACACATGGAAGAC+CGG | 0.502261 | 3_2:+2686327 | None:intergenic |
| GCTACAGAAGACTGCCTGTA+TGG | 0.522759 | 3_2:+2686462 | None:intergenic |
| AATGGACAGAGACAAGATAC+TGG | 0.535660 | 3_2:-2686598 | Msa0391180:CDS |
| AAATCTTCAATTGGGACACA+TGG | 0.539172 | 3_2:+2686319 | None:intergenic |
| GGGTGAATACGAGCTGTCTC+GGG | 0.541307 | 3_2:+2686348 | None:intergenic |
| TAGTGAAATTACAACCATAC+AGG | 0.563720 | 3_2:-2686476 | Msa0391180:CDS |
| CCACTTACCACAATGGAAGA+AGG | 0.566339 | 3_2:-2686261 | Msa0391180:CDS |
| AGAAGGTCCTGTCATACAGC+CGG | 0.568668 | 3_2:-2686244 | Msa0391180:CDS |
| GACAGGACCTTCTTCCATTG+TGG | 0.586761 | 3_2:+2686254 | None:intergenic |
| TTTACTGTGATAGCCAAAGT+AGG | 0.588782 | 3_2:-2686396 | Msa0391180:CDS |
| TCCCTTACCACTTACCACAA+TGG | 0.601277 | 3_2:-2686268 | Msa0391180:CDS |
| CGAGACAGCTCGTATTCACC+CGG | 0.614175 | 3_2:-2686346 | Msa0391180:CDS |
| ATTGGGACACATGGAAGACC+GGG | 0.634173 | 3_2:+2686328 | None:intergenic |
| AGAACAACAAATTAGGCATG+AGG | 0.649214 | 3_2:-2686431 | Msa0391180:CDS |
| GGACAGAGACAAGATACTGG+TGG | 0.667233 | 3_2:-2686595 | Msa0391180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTCAAAAAAAAAAAAACA+TGG | - | chr3_2:2685950-2685969 | Msa0391180:intron | 15.0% |
| !!! | GTACATTCTAATATTTTAAT+TGG | - | chr3_2:2686206-2686225 | Msa0391180:CDS | 15.0% |
| !!! | TTTTGTCTATTAATATTTCA+AGG | + | chr3_2:2686303-2686322 | None:intergenic | 15.0% |
| !! | GAAATAGTATAAAATATACA+AGG | - | chr3_2:2686415-2686434 | Msa0391180:CDS | 15.0% |
| !! | CTTTCAAAAAAAAAAAAACA+TGG | - | chr3_2:2685950-2685969 | Msa0391180:intron | 15.0% |
| !!! | GTACATTCTAATATTTTAAT+TGG | - | chr3_2:2686206-2686225 | Msa0391180:CDS | 15.0% |
| !!! | TTTTGTCTATTAATATTTCA+AGG | + | chr3_2:2686303-2686322 | None:intergenic | 15.0% |
| !! | GAAATAGTATAAAATATACA+AGG | - | chr3_2:2686415-2686434 | Msa0391180:CDS | 15.0% |
| !! | TTAAGAAAGAACAACAAATT+AGG | - | chr3_2:2685144-2685163 | Msa0391180:intron | 20.0% |
| !! | TAACAAAAAAATACTGGAAA+TGG | + | chr3_2:2685793-2685812 | None:intergenic | 20.0% |
| !! | TTCACTTAACAAAAAAATAC+TGG | + | chr3_2:2685799-2685818 | None:intergenic | 20.0% |
| !! | ATATGAATCAAGCAATTAAA+TGG | + | chr3_2:2685851-2685870 | None:intergenic | 20.0% |
| !! | ATTATATCATTCACTAAACA+TGG | - | chr3_2:2685916-2685935 | Msa0391180:intron | 20.0% |
| !! | TTAAGAAAGAACAACAAATT+AGG | - | chr3_2:2685144-2685163 | Msa0391180:intron | 20.0% |
| !! | TAACAAAAAAATACTGGAAA+TGG | + | chr3_2:2685793-2685812 | None:intergenic | 20.0% |
| !! | TTCACTTAACAAAAAAATAC+TGG | + | chr3_2:2685799-2685818 | None:intergenic | 20.0% |
| !! | ATATGAATCAAGCAATTAAA+TGG | + | chr3_2:2685851-2685870 | None:intergenic | 20.0% |
| !! | ATTATATCATTCACTAAACA+TGG | - | chr3_2:2685916-2685935 | Msa0391180:intron | 20.0% |
| !! | TTGTAGCACTTTTATCAATT+GGG | + | chr3_2:2685557-2685576 | None:intergenic | 25.0% |
| !! | TTTGTAGCACTTTTATCAAT+TGG | + | chr3_2:2685558-2685577 | None:intergenic | 25.0% |
| ! | TGTATCTTATATTTCAAGAG+TGG | + | chr3_2:2686148-2686167 | None:intergenic | 25.0% |
| ! | CTCTTGAAATATAAGATACA+TGG | - | chr3_2:2686148-2686167 | Msa0391180:intron | 25.0% |
| ! | TTGAAATATAAGATACATGG+AGG | - | chr3_2:2686151-2686170 | Msa0391180:intron | 25.0% |
| ! | CGGTACATTATTTGAATTAA+TGG | - | chr3_2:2686184-2686203 | Msa0391180:intron | 25.0% |
| ! | ACGTCATGCATAATAAATAT+TGG | + | chr3_2:2686350-2686369 | None:intergenic | 25.0% |
| ! | AGCAATGAAATGTTAGAAAA+GGG | + | chr3_2:2686501-2686520 | None:intergenic | 25.0% |
| ! | AAGCAATGAAATGTTAGAAA+AGG | + | chr3_2:2686502-2686521 | None:intergenic | 25.0% |
| !! | TTGTAGCACTTTTATCAATT+GGG | + | chr3_2:2685557-2685576 | None:intergenic | 25.0% |
| !! | TTTGTAGCACTTTTATCAAT+TGG | + | chr3_2:2685558-2685577 | None:intergenic | 25.0% |
| ! | TGTATCTTATATTTCAAGAG+TGG | + | chr3_2:2686148-2686167 | None:intergenic | 25.0% |
| ! | CTCTTGAAATATAAGATACA+TGG | - | chr3_2:2686148-2686167 | Msa0391180:intron | 25.0% |
| ! | TTGAAATATAAGATACATGG+AGG | - | chr3_2:2686151-2686170 | Msa0391180:intron | 25.0% |
| ! | CGGTACATTATTTGAATTAA+TGG | - | chr3_2:2686184-2686203 | Msa0391180:intron | 25.0% |
| ! | ACGTCATGCATAATAAATAT+TGG | + | chr3_2:2686350-2686369 | None:intergenic | 25.0% |
| ! | AGCAATGAAATGTTAGAAAA+GGG | + | chr3_2:2686501-2686520 | None:intergenic | 25.0% |
| ! | AAGCAATGAAATGTTAGAAA+AGG | + | chr3_2:2686502-2686521 | None:intergenic | 25.0% |
| !!! | AAAGATGTGTCTTTTGAAGT+AGG | - | chr3_2:2685072-2685091 | Msa0391180:intron | 30.0% |
| !!! | AAGATGTGTCTTTTGAAGTA+GGG | - | chr3_2:2685073-2685092 | Msa0391180:intron | 30.0% |
| TAGTGAAATTACAACCATAC+AGG | - | chr3_2:2685106-2685125 | Msa0391180:intron | 30.0% | |
| ! | TCCCAATTGAAGATTTTCAA+GGG | - | chr3_2:2685270-2685289 | Msa0391180:intron | 30.0% |
| ACCCTTGAAAATCTTCAATT+GGG | + | chr3_2:2685274-2685293 | None:intergenic | 30.0% | |
| CGTATGTTCAATATCATTTC+CGG | + | chr3_2:2685360-2685379 | None:intergenic | 30.0% | |
| CCTTCATTTACTAACAAACT+GGG | + | chr3_2:2685649-2685668 | None:intergenic | 30.0% | |
| !! | CCAGTTTGTTAGTAAATGAA+GGG | - | chr3_2:2685647-2685666 | Msa0391180:intron | 30.0% |
| ATGAAGGGATATTAAAGTAG+TGG | - | chr3_2:2685662-2685681 | Msa0391180:intron | 30.0% | |
| AAGGTAGAATAGAGAGAATA+AGG | + | chr3_2:2685740-2685759 | None:intergenic | 30.0% | |
| GTACTATGAACAGAAAGATA+AGG | + | chr3_2:2685759-2685778 | None:intergenic | 30.0% | |
| TATCTTTCTGTTCATAGTAC+TGG | - | chr3_2:2685759-2685778 | Msa0391180:intron | 30.0% | |
| AGTGAATTGAATGAAATCAG+TGG | - | chr3_2:2685813-2685832 | Msa0391180:intron | 30.0% | |
| !! | TCATTTGTATGCTGTTTCAT+AGG | + | chr3_2:2685995-2686014 | None:intergenic | 30.0% |
| ! | AACTAGTTTGCAATTTGCTT+TGG | - | chr3_2:2686092-2686111 | Msa0391180:intron | 30.0% |
| ATTCAAATAATGTACCGAGT+CGG | + | chr3_2:2686181-2686200 | None:intergenic | 30.0% | |
| !! | AGGCATTTGTCATTTGTTAT+TGG | + | chr3_2:2686283-2686302 | None:intergenic | 30.0% |
| !!! | AAAGATGTGTCTTTTGAAGT+AGG | - | chr3_2:2685072-2685091 | Msa0391180:intron | 30.0% |
| !!! | AAGATGTGTCTTTTGAAGTA+GGG | - | chr3_2:2685073-2685092 | Msa0391180:intron | 30.0% |
| TAGTGAAATTACAACCATAC+AGG | - | chr3_2:2685106-2685125 | Msa0391180:intron | 30.0% | |
| ! | TCCCAATTGAAGATTTTCAA+GGG | - | chr3_2:2685270-2685289 | Msa0391180:intron | 30.0% |
| ACCCTTGAAAATCTTCAATT+GGG | + | chr3_2:2685274-2685293 | None:intergenic | 30.0% | |
| CGTATGTTCAATATCATTTC+CGG | + | chr3_2:2685360-2685379 | None:intergenic | 30.0% | |
| CCTTCATTTACTAACAAACT+GGG | + | chr3_2:2685649-2685668 | None:intergenic | 30.0% | |
| !! | CCAGTTTGTTAGTAAATGAA+GGG | - | chr3_2:2685647-2685666 | Msa0391180:intron | 30.0% |
| ATGAAGGGATATTAAAGTAG+TGG | - | chr3_2:2685662-2685681 | Msa0391180:intron | 30.0% | |
| AAGGTAGAATAGAGAGAATA+AGG | + | chr3_2:2685740-2685759 | None:intergenic | 30.0% | |
| GTACTATGAACAGAAAGATA+AGG | + | chr3_2:2685759-2685778 | None:intergenic | 30.0% | |
| TATCTTTCTGTTCATAGTAC+TGG | - | chr3_2:2685759-2685778 | Msa0391180:intron | 30.0% | |
| AGTGAATTGAATGAAATCAG+TGG | - | chr3_2:2685813-2685832 | Msa0391180:intron | 30.0% | |
| !! | TCATTTGTATGCTGTTTCAT+AGG | + | chr3_2:2685995-2686014 | None:intergenic | 30.0% |
| ! | AACTAGTTTGCAATTTGCTT+TGG | - | chr3_2:2686092-2686111 | Msa0391180:intron | 30.0% |
| ATTCAAATAATGTACCGAGT+CGG | + | chr3_2:2686181-2686200 | None:intergenic | 30.0% | |
| !! | AGGCATTTGTCATTTGTTAT+TGG | + | chr3_2:2686283-2686302 | None:intergenic | 30.0% |
| !!! | AGATGTGTCTTTTGAAGTAG+GGG | - | chr3_2:2685074-2685093 | Msa0391180:intron | 35.0% |
| AGAACAACAAATTAGGCATG+AGG | - | chr3_2:2685151-2685170 | Msa0391180:intron | 35.0% | |
| ! | AAATTAGGCATGAGGTACTT+TGG | - | chr3_2:2685159-2685178 | Msa0391180:intron | 35.0% |
| ACTTTGGCTATCACAGTAAA+TGG | + | chr3_2:2685186-2685205 | None:intergenic | 35.0% | |
| TTTACTGTGATAGCCAAAGT+AGG | - | chr3_2:2685186-2685205 | Msa0391180:intron | 35.0% | |
| AAATCTTCAATTGGGACACA+TGG | + | chr3_2:2685266-2685285 | None:intergenic | 35.0% | |
| ! | GTCCCAATTGAAGATTTTCA+AGG | - | chr3_2:2685269-2685288 | Msa0391180:intron | 35.0% |
| GACCCTTGAAAATCTTCAAT+TGG | + | chr3_2:2685275-2685294 | None:intergenic | 35.0% | |
| GTAAGTGGTAAGGGAAAATA+TGG | + | chr3_2:2685309-2685328 | None:intergenic | 35.0% | |
| ! | AACATACGCAACATTTTCAG+AGG | - | chr3_2:2685372-2685391 | Msa0391180:intron | 35.0% |
| TTGTCCTCAAGATTGAGATT+GGG | + | chr3_2:2685492-2685511 | None:intergenic | 35.0% | |
| AGGACAAGATTGTTCTTGAA+GGG | - | chr3_2:2685505-2685524 | Msa0391180:intron | 35.0% | |
| AAGTGCTACAAATGATGACA+TGG | - | chr3_2:2685566-2685585 | Msa0391180:intron | 35.0% | |
| TGATGACATGGCAAATAAGA+AGG | - | chr3_2:2685578-2685597 | Msa0391180:intron | 35.0% | |
| GATGACATGGCAAATAAGAA+GGG | - | chr3_2:2685579-2685598 | Msa0391180:intron | 35.0% | |
| !! | CCCAGTTTGTTAGTAAATGA+AGG | - | chr3_2:2685646-2685665 | Msa0391180:intron | 35.0% |
| CCCTTCATTTACTAACAAAC+TGG | + | chr3_2:2685650-2685669 | None:intergenic | 35.0% | |
| TAGTGGTAGTAGAATGAATG+TGG | - | chr3_2:2685679-2685698 | Msa0391180:intron | 35.0% | |
| AATCAATACAACTCGTGCAA+GGG | - | chr3_2:2686022-2686041 | Msa0391180:intron | 35.0% | |
| !!! | AATTTCCGTTTTTTCGAGAG+GGG | + | chr3_2:2686472-2686491 | None:intergenic | 35.0% |
| !!! | CAATTTCCGTTTTTTCGAGA+GGG | + | chr3_2:2686473-2686492 | None:intergenic | 35.0% |
| !! | TTCAAGTTGCATTGATTCTC+TGG | - | chr3_2:2686555-2686574 | Msa0391180:CDS | 35.0% |
| !!! | AGATGTGTCTTTTGAAGTAG+GGG | - | chr3_2:2685074-2685093 | Msa0391180:intron | 35.0% |
| AGAACAACAAATTAGGCATG+AGG | - | chr3_2:2685151-2685170 | Msa0391180:intron | 35.0% | |
| ! | AAATTAGGCATGAGGTACTT+TGG | - | chr3_2:2685159-2685178 | Msa0391180:intron | 35.0% |
| ACTTTGGCTATCACAGTAAA+TGG | + | chr3_2:2685186-2685205 | None:intergenic | 35.0% | |
| TTTACTGTGATAGCCAAAGT+AGG | - | chr3_2:2685186-2685205 | Msa0391180:intron | 35.0% | |
| AAATCTTCAATTGGGACACA+TGG | + | chr3_2:2685266-2685285 | None:intergenic | 35.0% | |
| ! | GTCCCAATTGAAGATTTTCA+AGG | - | chr3_2:2685269-2685288 | Msa0391180:intron | 35.0% |
| GACCCTTGAAAATCTTCAAT+TGG | + | chr3_2:2685275-2685294 | None:intergenic | 35.0% | |
| GTAAGTGGTAAGGGAAAATA+TGG | + | chr3_2:2685309-2685328 | None:intergenic | 35.0% | |
| ! | AACATACGCAACATTTTCAG+AGG | - | chr3_2:2685372-2685391 | Msa0391180:intron | 35.0% |
| TTGTCCTCAAGATTGAGATT+GGG | + | chr3_2:2685492-2685511 | None:intergenic | 35.0% | |
| AGGACAAGATTGTTCTTGAA+GGG | - | chr3_2:2685505-2685524 | Msa0391180:intron | 35.0% | |
| AAGTGCTACAAATGATGACA+TGG | - | chr3_2:2685566-2685585 | Msa0391180:intron | 35.0% | |
| TGATGACATGGCAAATAAGA+AGG | - | chr3_2:2685578-2685597 | Msa0391180:intron | 35.0% | |
| GATGACATGGCAAATAAGAA+GGG | - | chr3_2:2685579-2685598 | Msa0391180:intron | 35.0% | |
| !! | CCCAGTTTGTTAGTAAATGA+AGG | - | chr3_2:2685646-2685665 | Msa0391180:intron | 35.0% |
| CCCTTCATTTACTAACAAAC+TGG | + | chr3_2:2685650-2685669 | None:intergenic | 35.0% | |
| TAGTGGTAGTAGAATGAATG+TGG | - | chr3_2:2685679-2685698 | Msa0391180:intron | 35.0% | |
| AATCAATACAACTCGTGCAA+GGG | - | chr3_2:2686022-2686041 | Msa0391180:intron | 35.0% | |
| !!! | AATTTCCGTTTTTTCGAGAG+GGG | + | chr3_2:2686472-2686491 | None:intergenic | 35.0% |
| !!! | CAATTTCCGTTTTTTCGAGA+GGG | + | chr3_2:2686473-2686492 | None:intergenic | 35.0% |
| !! | TTCAAGTTGCATTGATTCTC+TGG | - | chr3_2:2686555-2686574 | Msa0391180:CDS | 35.0% |
| ! | AAATTTACTGAGAGCACAGC+AGG | - | chr3_2:2685020-2685039 | Msa0391180:intron | 40.0% |
| ATAAGCTACTGCTCCTACTT+TGG | + | chr3_2:2685202-2685221 | None:intergenic | 40.0% | |
| TCCATTGTGGTAAGTGGTAA+GGG | + | chr3_2:2685318-2685337 | None:intergenic | 40.0% | |
| TTCCATTGTGGTAAGTGGTA+AGG | + | chr3_2:2685319-2685338 | None:intergenic | 40.0% | |
| TTTCAGAGGAGATCGAAAAG+TGG | - | chr3_2:2685386-2685405 | Msa0391180:intron | 40.0% | |
| TGTCCTCAAGATTGAGATTG+GGG | + | chr3_2:2685491-2685510 | None:intergenic | 40.0% | |
| CTTGTCCTCAAGATTGAGAT+TGG | + | chr3_2:2685493-2685512 | None:intergenic | 40.0% | |
| GAGGACAAGATTGTTCTTGA+AGG | - | chr3_2:2685504-2685523 | Msa0391180:intron | 40.0% | |
| GGACAAGATTGTTCTTGAAG+GGG | - | chr3_2:2685506-2685525 | Msa0391180:intron | 40.0% | |
| AAGATTGTTCTTGAAGGGGA+GGG | - | chr3_2:2685510-2685529 | Msa0391180:intron | 40.0% | |
| TCAAAGGGAATCATCCAATG+TGG | - | chr3_2:2685622-2685641 | Msa0391180:intron | 40.0% | |
| TGGTAGTAGAATGAATGTGG+TGG | - | chr3_2:2685682-2685701 | Msa0391180:intron | 40.0% | |
| GGTAGTAGAATGAATGTGGT+GGG | - | chr3_2:2685683-2685702 | Msa0391180:intron | 40.0% | |
| GAATCAATACAACTCGTGCA+AGG | - | chr3_2:2686021-2686040 | Msa0391180:intron | 40.0% | |
| ATCAATACAACTCGTGCAAG+GGG | - | chr3_2:2686023-2686042 | Msa0391180:intron | 40.0% | |
| ACATTCCCCTCTCGAAAAAA+CGG | - | chr3_2:2686464-2686483 | Msa0391180:CDS | 40.0% | |
| !!! | GCAATTTCCGTTTTTTCGAG+AGG | + | chr3_2:2686474-2686493 | None:intergenic | 40.0% |
| !! | TGCATTGATTCTCTGGTTTG+TGG | - | chr3_2:2686562-2686581 | Msa0391180:CDS | 40.0% |
| !! | TTCTCTGGTTTGTGGTGTTT+TGG | - | chr3_2:2686570-2686589 | Msa0391180:CDS | 40.0% |
| !! | TCTCTGGTTTGTGGTGTTTT+GGG | - | chr3_2:2686571-2686590 | Msa0391180:CDS | 40.0% |
| ! | AAATTTACTGAGAGCACAGC+AGG | - | chr3_2:2685020-2685039 | Msa0391180:intron | 40.0% |
| ATAAGCTACTGCTCCTACTT+TGG | + | chr3_2:2685202-2685221 | None:intergenic | 40.0% | |
| TCCATTGTGGTAAGTGGTAA+GGG | + | chr3_2:2685318-2685337 | None:intergenic | 40.0% | |
| TTCCATTGTGGTAAGTGGTA+AGG | + | chr3_2:2685319-2685338 | None:intergenic | 40.0% | |
| TTTCAGAGGAGATCGAAAAG+TGG | - | chr3_2:2685386-2685405 | Msa0391180:intron | 40.0% | |
| TGTCCTCAAGATTGAGATTG+GGG | + | chr3_2:2685491-2685510 | None:intergenic | 40.0% | |
| CTTGTCCTCAAGATTGAGAT+TGG | + | chr3_2:2685493-2685512 | None:intergenic | 40.0% | |
| GAGGACAAGATTGTTCTTGA+AGG | - | chr3_2:2685504-2685523 | Msa0391180:intron | 40.0% | |
| GGACAAGATTGTTCTTGAAG+GGG | - | chr3_2:2685506-2685525 | Msa0391180:intron | 40.0% | |
| AAGATTGTTCTTGAAGGGGA+GGG | - | chr3_2:2685510-2685529 | Msa0391180:intron | 40.0% | |
| TCAAAGGGAATCATCCAATG+TGG | - | chr3_2:2685622-2685641 | Msa0391180:intron | 40.0% | |
| TGGTAGTAGAATGAATGTGG+TGG | - | chr3_2:2685682-2685701 | Msa0391180:intron | 40.0% | |
| GGTAGTAGAATGAATGTGGT+GGG | - | chr3_2:2685683-2685702 | Msa0391180:intron | 40.0% | |
| GAATCAATACAACTCGTGCA+AGG | - | chr3_2:2686021-2686040 | Msa0391180:intron | 40.0% | |
| ATCAATACAACTCGTGCAAG+GGG | - | chr3_2:2686023-2686042 | Msa0391180:intron | 40.0% | |
| ACATTCCCCTCTCGAAAAAA+CGG | - | chr3_2:2686464-2686483 | Msa0391180:CDS | 40.0% | |
| !!! | GCAATTTCCGTTTTTTCGAG+AGG | + | chr3_2:2686474-2686493 | None:intergenic | 40.0% |
| !! | TGCATTGATTCTCTGGTTTG+TGG | - | chr3_2:2686562-2686581 | Msa0391180:CDS | 40.0% |
| !! | TTCTCTGGTTTGTGGTGTTT+TGG | - | chr3_2:2686570-2686589 | Msa0391180:CDS | 40.0% |
| !! | TCTCTGGTTTGTGGTGTTTT+GGG | - | chr3_2:2686571-2686590 | Msa0391180:CDS | 40.0% |
| AATTGGGACACATGGAAGAC+CGG | + | chr3_2:2685258-2685277 | None:intergenic | 45.0% | |
| TCCCTTACCACTTACCACAA+TGG | - | chr3_2:2685314-2685333 | Msa0391180:intron | 45.0% | |
| CCTTCTTCCATTGTGGTAAG+TGG | + | chr3_2:2685324-2685343 | None:intergenic | 45.0% | |
| CCACTTACCACAATGGAAGA+AGG | - | chr3_2:2685321-2685340 | Msa0391180:intron | 45.0% | |
| ATCATTTCCGGCTGTATGAC+AGG | + | chr3_2:2685348-2685367 | None:intergenic | 45.0% | |
| TGGAGCAACTGCTAGTGAAA+TGG | - | chr3_2:2685406-2685425 | Msa0391180:intron | 45.0% | |
| GCAACTGCTAGTGAAATGGA+AGG | - | chr3_2:2685410-2685429 | Msa0391180:intron | 45.0% | |
| TGCAGAACAGTGAAGCTACT+TGG | - | chr3_2:2685436-2685455 | Msa0391180:intron | 45.0% | |
| GCAGAACAGTGAAGCTACTT+GGG | - | chr3_2:2685437-2685456 | Msa0391180:intron | 45.0% | |
| GGAAGACAAGCAAGAGATGT+TGG | - | chr3_2:2685458-2685477 | Msa0391180:intron | 45.0% | |
| CTACCCCAATCTCAATCTTG+AGG | - | chr3_2:2685485-2685504 | Msa0391180:intron | 45.0% | |
| CAAGATTGTTCTTGAAGGGG+AGG | - | chr3_2:2685509-2685528 | Msa0391180:intron | 45.0% | |
| GGAGGGTAATGTTATGAGTG+TGG | - | chr3_2:2685527-2685546 | Msa0391180:intron | 45.0% | |
| AGACGTAGCTACAGGATCAA+AGG | - | chr3_2:2685606-2685625 | Msa0391180:intron | 45.0% | |
| GACGTAGCTACAGGATCAAA+GGG | - | chr3_2:2685607-2685626 | Msa0391180:intron | 45.0% | |
| CTAACAAACTGGGACCACAT+TGG | + | chr3_2:2685639-2685658 | None:intergenic | 45.0% | |
| ! | TACATGGAGGTATACCGACT+CGG | - | chr3_2:2686164-2686183 | Msa0391180:intron | 45.0% |
| AATTGGGACACATGGAAGAC+CGG | + | chr3_2:2685258-2685277 | None:intergenic | 45.0% | |
| TCCCTTACCACTTACCACAA+TGG | - | chr3_2:2685314-2685333 | Msa0391180:intron | 45.0% | |
| CCTTCTTCCATTGTGGTAAG+TGG | + | chr3_2:2685324-2685343 | None:intergenic | 45.0% | |
| CCACTTACCACAATGGAAGA+AGG | - | chr3_2:2685321-2685340 | Msa0391180:intron | 45.0% | |
| ATCATTTCCGGCTGTATGAC+AGG | + | chr3_2:2685348-2685367 | None:intergenic | 45.0% | |
| TGGAGCAACTGCTAGTGAAA+TGG | - | chr3_2:2685406-2685425 | Msa0391180:intron | 45.0% | |
| GCAACTGCTAGTGAAATGGA+AGG | - | chr3_2:2685410-2685429 | Msa0391180:intron | 45.0% | |
| TGCAGAACAGTGAAGCTACT+TGG | - | chr3_2:2685436-2685455 | Msa0391180:intron | 45.0% | |
| GCAGAACAGTGAAGCTACTT+GGG | - | chr3_2:2685437-2685456 | Msa0391180:intron | 45.0% | |
| GGAAGACAAGCAAGAGATGT+TGG | - | chr3_2:2685458-2685477 | Msa0391180:intron | 45.0% | |
| CTACCCCAATCTCAATCTTG+AGG | - | chr3_2:2685485-2685504 | Msa0391180:intron | 45.0% | |
| CAAGATTGTTCTTGAAGGGG+AGG | - | chr3_2:2685509-2685528 | Msa0391180:intron | 45.0% | |
| GGAGGGTAATGTTATGAGTG+TGG | - | chr3_2:2685527-2685546 | Msa0391180:intron | 45.0% | |
| AGACGTAGCTACAGGATCAA+AGG | - | chr3_2:2685606-2685625 | Msa0391180:intron | 45.0% | |
| GACGTAGCTACAGGATCAAA+GGG | - | chr3_2:2685607-2685626 | Msa0391180:intron | 45.0% | |
| CTAACAAACTGGGACCACAT+TGG | + | chr3_2:2685639-2685658 | None:intergenic | 45.0% | |
| ! | TACATGGAGGTATACCGACT+CGG | - | chr3_2:2686164-2686183 | Msa0391180:intron | 45.0% |
| GGACAGAGACAAGATACTGG+TGG | - | chr3_2:2684987-2685006 | Msa0391180:intron | 50.0% | |
| GCTACAGAAGACTGCCTGTA+TGG | + | chr3_2:2685123-2685142 | None:intergenic | 50.0% | |
| ATTGGGACACATGGAAGACC+GGG | + | chr3_2:2685257-2685276 | None:intergenic | 50.0% | |
| GACAGGACCTTCTTCCATTG+TGG | + | chr3_2:2685331-2685350 | None:intergenic | 50.0% | |
| AGAAGGTCCTGTCATACAGC+CGG | - | chr3_2:2685338-2685357 | Msa0391180:intron | 50.0% | |
| AGGGATTGAGACGTAGCTAC+AGG | - | chr3_2:2685598-2685617 | Msa0391180:intron | 50.0% | |
| AATACAACTCGTGCAAGGGG+AGG | - | chr3_2:2686026-2686045 | Msa0391180:intron | 50.0% | |
| GTGACGCTTTGCACATATGC+AGG | - | chr3_2:2686437-2686456 | Msa0391180:CDS | 50.0% | |
| CGCTTTGCACATATGCAGGA+CGG | - | chr3_2:2686441-2686460 | Msa0391180:CDS | 50.0% | |
| GGACAGAGACAAGATACTGG+TGG | - | chr3_2:2684987-2685006 | Msa0391180:intron | 50.0% | |
| GCTACAGAAGACTGCCTGTA+TGG | + | chr3_2:2685123-2685142 | None:intergenic | 50.0% | |
| ATTGGGACACATGGAAGACC+GGG | + | chr3_2:2685257-2685276 | None:intergenic | 50.0% | |
| GACAGGACCTTCTTCCATTG+TGG | + | chr3_2:2685331-2685350 | None:intergenic | 50.0% | |
| AGAAGGTCCTGTCATACAGC+CGG | - | chr3_2:2685338-2685357 | Msa0391180:intron | 50.0% | |
| AGGGATTGAGACGTAGCTAC+AGG | - | chr3_2:2685598-2685617 | Msa0391180:intron | 50.0% | |
| AATACAACTCGTGCAAGGGG+AGG | - | chr3_2:2686026-2686045 | Msa0391180:intron | 50.0% | |
| GTGACGCTTTGCACATATGC+AGG | - | chr3_2:2686437-2686456 | Msa0391180:CDS | 50.0% | |
| CGCTTTGCACATATGCAGGA+CGG | - | chr3_2:2686441-2686460 | Msa0391180:CDS | 50.0% | |
| GGGTGAATACGAGCTGTCTC+GGG | + | chr3_2:2685237-2685256 | None:intergenic | 55.0% | |
| CGGGTGAATACGAGCTGTCT+CGG | + | chr3_2:2685238-2685257 | None:intergenic | 55.0% | |
| CGAGACAGCTCGTATTCACC+CGG | - | chr3_2:2685236-2685255 | Msa0391180:intron | 55.0% | |
| GGGTGAATACGAGCTGTCTC+GGG | + | chr3_2:2685237-2685256 | None:intergenic | 55.0% | |
| CGGGTGAATACGAGCTGTCT+CGG | + | chr3_2:2685238-2685257 | None:intergenic | 55.0% | |
| CGAGACAGCTCGTATTCACC+CGG | - | chr3_2:2685236-2685255 | Msa0391180:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 2684985 | 2686619 | 2684985 | ID=Msa0391180;Name=Msa0391180 |
| chr3_2 | mRNA | 2684985 | 2686619 | 2684985 | ID=Msa0391180-mRNA-1;Parent=Msa0391180;Name=Msa0391180-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.5|1|1|2|0|143 |
| chr3_2 | exon | 2686200 | 2686619 | 2686200 | ID=Msa0391180-mRNA-1:exon:848;Parent=Msa0391180-mRNA-1 |
| chr3_2 | exon | 2684985 | 2684996 | 2684985 | ID=Msa0391180-mRNA-1:exon:847;Parent=Msa0391180-mRNA-1 |
| chr3_2 | CDS | 2686200 | 2686619 | 2686200 | ID=Msa0391180-mRNA-1:cds;Parent=Msa0391180-mRNA-1 |
| chr3_2 | CDS | 2684985 | 2684996 | 2684985 | ID=Msa0391180-mRNA-1:cds;Parent=Msa0391180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
