Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393910 | XP_003598253.1 | 96.154 | 468 | 18 | 0 | 1 | 468 | 1 | 468 | 0.0 | 937 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393910 | sp|Q7Z9L3|EXGA_ASPOR | 31.579 | 342 | 174 | 11 | 162 | 456 | 48 | 376 | 1.56e-42 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393910 | G7IYK7 | 96.154 | 468 | 18 | 0 | 1 | 468 | 1 | 468 | 0.0 | 937 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013270 | Msa0393910 | 0.812049 | 5.155898e-51 | -8.615850e-47 |
| Msa0036350 | Msa0393910 | 0.803857 | 2.853566e-49 | -8.615850e-47 |
| Msa0364910 | Msa0393910 | -0.800989 | 1.112264e-48 | -8.615850e-47 |
| Msa0393910 | Msa0412580 | -0.807977 | 3.882765e-50 | -8.615850e-47 |
| Msa0393910 | Msa0441750 | 0.830555 | 2.749336e-55 | -8.615850e-47 |
| Msa0393910 | Msa0489370 | 0.826440 | 2.709221e-54 | -8.615850e-47 |
| Msa0393910 | Msa0493870 | 0.803760 | 2.989550e-49 | -8.615850e-47 |
| Msa0393910 | Msa0531050 | 0.812249 | 4.661268e-51 | -8.615850e-47 |
| Msa0393910 | Msa0559440 | -0.800931 | 1.143053e-48 | -8.615850e-47 |
| Msa0393910 | Msa0568780 | -0.806121 | 9.593631e-50 | -8.615850e-47 |
| Msa0393910 | Msa0603300 | 0.814418 | 1.556348e-51 | -8.615850e-47 |
| Msa0393910 | Msa0614960 | 0.812090 | 5.049177e-51 | -8.615850e-47 |
| Msa0393910 | Msa0654400 | -0.800207 | 1.606222e-48 | -8.615850e-47 |
| Msa0393910 | Msa0699170 | 0.813201 | 2.886059e-51 | -8.615850e-47 |
| Msa0393910 | Msa0699800 | 0.823488 | 1.348305e-53 | -8.615850e-47 |
| Msa0393910 | Msa0701430 | 0.802209 | 6.254144e-49 | -8.615850e-47 |
| Msa0393910 | Msa0738680 | 0.824137 | 9.501066e-54 | -8.615850e-47 |
| Msa0393910 | Msa0819150 | 0.822012 | 2.974084e-53 | -8.615850e-47 |
| Msa0393910 | Msa0914710 | 0.800743 | 1.249225e-48 | -8.615850e-47 |
| Msa0393910 | Msa0934290 | -0.804879 | 1.747565e-49 | -8.615850e-47 |
| Msa0393910 | Msa0971780 | -0.810622 | 1.051598e-50 | -8.615850e-47 |
| Msa0393910 | Msa1075090 | 0.814238 | 1.705281e-51 | -8.615850e-47 |
| Msa0393910 | Msa1077970 | 0.819462 | 1.147026e-52 | -8.615850e-47 |
| Msa0393910 | Msa1104020 | -0.800841 | 1.192851e-48 | -8.615850e-47 |
| Msa0393910 | Msa1110900 | 0.817992 | 2.473266e-52 | -8.615850e-47 |
| Msa0393910 | Msa1129120 | -0.803053 | 4.189121e-49 | -8.615850e-47 |
| Msa0393910 | Msa1142390 | 0.805710 | 1.170468e-49 | -8.615850e-47 |
| Msa0393910 | Msa1388720 | -0.800992 | 1.111040e-48 | -8.615850e-47 |
| Msa0242720 | Msa0393910 | 0.835623 | 1.506332e-56 | -8.615850e-47 |
| Msa0264580 | Msa0393910 | -0.807811 | 4.212452e-50 | -8.615850e-47 |
| Msa0271720 | Msa0393910 | 0.804610 | 1.989317e-49 | -8.615850e-47 |
| Msa0281000 | Msa0393910 | 0.812997 | 3.197979e-51 | -8.615850e-47 |
| Msa0294200 | Msa0393910 | 0.845068 | 5.112832e-59 | -8.615850e-47 |
| Msa0320170 | Msa0393910 | 0.802883 | 4.540853e-49 | -8.615850e-47 |
| Msa0339970 | Msa0393910 | -0.807914 | 4.004533e-50 | -8.615850e-47 |
| Msa0347320 | Msa0393910 | 0.875111 | 3.984484e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393910 | MtrunA17_Chr3g0079451 | 96.154 | 468 | 18 | 0 | 1 | 468 | 1 | 468 | 0.0 | 937 |
| Msa0393910 | MtrunA17_Chr3g0079441 | 83.369 | 463 | 75 | 2 | 6 | 468 | 26 | 486 | 0.0 | 803 |
| Msa0393910 | MtrunA17_Chr3g0079461 | 81.799 | 467 | 83 | 2 | 3 | 468 | 27 | 492 | 0.0 | 799 |
| Msa0393910 | MtrunA17_Chr3g0079431 | 79.914 | 463 | 89 | 2 | 6 | 468 | 26 | 484 | 0.0 | 771 |
| Msa0393910 | MtrunA17_Chr8g0382641 | 66.242 | 471 | 154 | 3 | 3 | 468 | 31 | 501 | 0.0 | 665 |
| Msa0393910 | MtrunA17_Chr5g0425361 | 57.053 | 475 | 191 | 7 | 3 | 468 | 32 | 502 | 0.0 | 560 |
| Msa0393910 | MtrunA17_Chr5g0425401 | 55.864 | 469 | 196 | 6 | 7 | 468 | 36 | 500 | 0.0 | 545 |
| Msa0393910 | MtrunA17_Chr3g0123661 | 49.474 | 475 | 227 | 9 | 2 | 468 | 31 | 500 | 2.63e-158 | 460 |
| Msa0393910 | MtrunA17_Chr5g0425351 | 40.708 | 226 | 90 | 6 | 194 | 415 | 19 | 204 | 2.80e-46 | 160 |
| Msa0393910 | MtrunA17_Chr5g0425291 | 48.485 | 66 | 33 | 1 | 192 | 257 | 19 | 83 | 1.77e-16 | 74.7 |
| Msa0393910 | MtrunA17_Chr5g0425301 | 46.753 | 77 | 39 | 2 | 346 | 420 | 1 | 77 | 1.35e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 109 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTATCAAGGCACAAAT+TGG | 0.213760 | 3_2:-8184821 | Msa0393910:CDS |
| TGCATTACTACAATATGTTT+TGG | 0.227561 | 3_2:-8182839 | Msa0393910:CDS |
| TTCAGATTTATGTCACAAAA+TGG | 0.249547 | 3_2:-8184557 | Msa0393910:CDS |
| CAACATTTGGATGGGCTTAT+TGG | 0.274922 | 3_2:-8182482 | Msa0393910:CDS |
| AAGAAACATTTCAGATTATA+AGG | 0.276821 | 3_2:-8185644 | Msa0393910:CDS |
| GCAATTGAAGGTTCTCAAAA+TGG | 0.284192 | 3_2:-8183543 | Msa0393910:CDS |
| GCCAACCGTGGTTCACCTTC+TGG | 0.286700 | 3_2:-8186020 | Msa0393910:CDS |
| ATTGCGCTTGGGCGAAGTTT+TGG | 0.287207 | 3_2:+8182523 | None:intergenic |
| ACGATTAAACTGACATTTGT+AGG | 0.319818 | 3_2:+8182458 | None:intergenic |
| ACAAAAGGCTTAGGTGGATT+TGG | 0.325909 | 3_2:+8184488 | None:intergenic |
| AAGACTTGAGGGGCTCTATC+TGG | 0.327001 | 3_2:+8184717 | None:intergenic |
| CAGGGCCGTTCCTATGAAAT+AGG | 0.339029 | 3_2:-8181709 | None:intergenic |
| AATCAATCACAGGGACTGTC+TGG | 0.355454 | 3_2:+8183463 | None:intergenic |
| GCTCTTCTCTCATTTGTTAG+TGG | 0.361357 | 3_2:-8182885 | Msa0393910:CDS |
| AAACTTCGCCCAAGCGCAAT+TGG | 0.377941 | 3_2:-8182520 | Msa0393910:CDS |
| TATGGTAATAAACCAAGTTT+AGG | 0.379061 | 3_2:-8183050 | Msa0393910:CDS |
| CTTAGGTGGATTTGGATCAT+AGG | 0.380775 | 3_2:+8184496 | None:intergenic |
| CGCAATTGGATGTGTATTCT+CGG | 0.384741 | 3_2:-8182506 | Msa0393910:CDS |
| GTTGAACACCCTAAAATTGA+AGG | 0.385361 | 3_2:+8185740 | None:intergenic |
| GAATCTAGGAAACTGGCTTT+TGG | 0.389983 | 3_2:-8186299 | Msa0393910:CDS |
| CAAAATGGCAATGAACATAG+TGG | 0.392126 | 3_2:-8183528 | Msa0393910:CDS |
| GTGTATTCTCGGGCAACATT+TGG | 0.393337 | 3_2:-8182495 | Msa0393910:CDS |
| TCATTAATTTGCAGCTTTGG+AGG | 0.400954 | 3_2:-8185776 | Msa0393910:intron |
| ATAGAGCCCCTCAAGTCTTA+AGG | 0.401028 | 3_2:-8184713 | Msa0393910:CDS |
| CCATACAAAGCTGTGAATCT+AGG | 0.407481 | 3_2:-8186313 | Msa0393910:CDS |
| AAGCTGTGAATCTAGGAAAC+TGG | 0.408682 | 3_2:-8186306 | Msa0393910:CDS |
| CCGTGGTTCACCTTCTGGTT+GGG | 0.410067 | 3_2:-8186015 | Msa0393910:CDS |
| CAAGAGATGGATATATAGAA+TGG | 0.417101 | 3_2:-8183503 | Msa0393910:CDS |
| ATGCTTTGATTCGAACTTTG+AGG | 0.417179 | 3_2:+8185607 | None:intergenic |
| CCTAGATTCACAGCTTTGTA+TGG | 0.417981 | 3_2:+8186313 | None:intergenic |
| ATGAAACCTTCTCTCTTTGA+AGG | 0.421131 | 3_2:-8186265 | Msa0393910:CDS |
| AAATATCTTTGTGCTGAAGA+TGG | 0.433448 | 3_2:-8186062 | Msa0393910:CDS |
| AAGAGATGGATATATAGAAT+GGG | 0.434894 | 3_2:-8183502 | Msa0393910:CDS |
| TGCAGTAACTGTTGCTAGCA+TGG | 0.437980 | 3_2:-8181772 | Msa0393910:intron |
| TACCAACTTACTAATGGTTA+TGG | 0.439502 | 3_2:-8184741 | Msa0393910:CDS |
| AGCTCTATTCCTCCTAAACT+TGG | 0.449256 | 3_2:+8183038 | None:intergenic |
| TTCTCGGGCAACATTTGGAT+GGG | 0.450046 | 3_2:-8182490 | Msa0393910:CDS |
| TAGAGCCCCTCAAGTCTTAA+GGG | 0.451932 | 3_2:-8184712 | Msa0393910:intron |
| AATATCTTTGTGCTGAAGAT+GGG | 0.456726 | 3_2:-8186061 | Msa0393910:CDS |
| TGTTTGCTTTGCAGGAGCAT+TGG | 0.457577 | 3_2:-8184604 | Msa0393910:intron |
| TTCTCACCCTTAAGACTTGA+GGG | 0.457721 | 3_2:+8184706 | None:intergenic |
| TGCTTTGATTCGAACTTTGA+GGG | 0.457798 | 3_2:+8185608 | None:intergenic |
| TGAAATGTTTCTTTGTTGCT+AGG | 0.466396 | 3_2:+8185654 | None:intergenic |
| GAAAGAGCATCAGATCTTGC+TGG | 0.479776 | 3_2:-8182765 | Msa0393910:CDS |
| AGCCGAGCCTCCTATTTCAT+AGG | 0.481470 | 3_2:+8181699 | None:intergenic |
| AAGACTTTGAATCTCTTGAC+AGG | 0.485353 | 3_2:-8181728 | Msa0393910:CDS |
| ACCGTGGTTCACCTTCTGGT+TGG | 0.489604 | 3_2:-8186016 | Msa0393910:CDS |
| TAGGCTATCCACCATCCAAC+AGG | 0.491070 | 3_2:+8184515 | None:intergenic |
| CCACAATCACTTTCATCCCA+TGG | 0.493223 | 3_2:+8183574 | None:intergenic |
| AATTGTCAACAAAGATCTCT+TGG | 0.493359 | 3_2:-8186242 | Msa0393910:intron |
| TGTAATCATGTCAAATCCAT+TGG | 0.495094 | 3_2:-8182922 | Msa0393910:CDS |
| GTGGACTTGCATGCAATTGA+AGG | 0.498572 | 3_2:-8183555 | Msa0393910:CDS |
| CATTAATTTGCAGCTTTGGA+GGG | 0.502035 | 3_2:-8185775 | Msa0393910:intron |
| ATTCTCGGGCAACATTTGGA+TGG | 0.503691 | 3_2:-8182491 | Msa0393910:CDS |
| AATACACATCCAATTGCGCT+TGG | 0.507025 | 3_2:+8182511 | None:intergenic |
| CACTTGACAATGCTTTCACA+TGG | 0.508127 | 3_2:-8184448 | Msa0393910:CDS |
| TTTGTGGGGTTAAATACTAT+AGG | 0.509718 | 3_2:-8185711 | Msa0393910:CDS |
| GGAGAGTACCAACTTACTAA+TGG | 0.515314 | 3_2:-8184747 | Msa0393910:CDS |
| GACCATAACCATTAGTAAGT+TGG | 0.516537 | 3_2:+8184739 | None:intergenic |
| AAATTATCAAGGCACAAATT+GGG | 0.518686 | 3_2:-8184820 | Msa0393910:CDS |
| AAAATGGATTAGATGCTGTC+AGG | 0.519664 | 3_2:-8184541 | Msa0393910:CDS |
| ACAAATGTCAGTTTAATCGT+TGG | 0.527570 | 3_2:-8182455 | Msa0393910:CDS |
| TAGGGGAATGGACGGGTGAG+TGG | 0.529808 | 3_2:-8182575 | Msa0393910:CDS |
| GCAGTAACTGTTGCTAGCAT+GGG | 0.532334 | 3_2:-8181771 | Msa0393910:intron |
| CTCAAGTGGATGATCGAGAA+TGG | 0.534717 | 3_2:-8182429 | Msa0393910:intron |
| GGTAATAAACCAAGTTTAGG+AGG | 0.535992 | 3_2:-8183047 | Msa0393910:CDS |
| ATACACATCCAATTGCGCTT+GGG | 0.537002 | 3_2:+8182512 | None:intergenic |
| ATCAATCACAGGGACTGTCT+GGG | 0.539700 | 3_2:+8183464 | None:intergenic |
| GCTTTAGAATCTCCATCCAA+TGG | 0.542610 | 3_2:+8182906 | None:intergenic |
| GAACATAGTGGGACAAGAGA+TGG | 0.543354 | 3_2:-8183516 | Msa0393910:CDS |
| ACAATTCCTTCAAAGAGAGA+AGG | 0.552174 | 3_2:+8186259 | None:intergenic |
| ATCATGTCAAATCCATTGGA+TGG | 0.553245 | 3_2:-8182918 | Msa0393910:CDS |
| CCATGGGATGAAAGTGATTG+TGG | 0.555733 | 3_2:-8183574 | Msa0393910:CDS |
| GCAATTGGATGTGTATTCTC+GGG | 0.557257 | 3_2:-8182505 | Msa0393910:CDS |
| ATATCTTTGTGCTGAAGATG+GGG | 0.558601 | 3_2:-8186060 | Msa0393910:CDS |
| ATTCTCACCCTTAAGACTTG+AGG | 0.559378 | 3_2:+8184705 | None:intergenic |
| TGTGCTAAGAAATCAATCAC+AGG | 0.569089 | 3_2:+8183453 | None:intergenic |
| GGGTTAAATACTATAGGAGG+AGG | 0.574219 | 3_2:-8185705 | Msa0393910:CDS |
| ACCAGAAGGTGAACCACGGT+TGG | 0.574519 | 3_2:+8186019 | None:intergenic |
| ACAATTGTAAACACATTACA+AGG | 0.575947 | 3_2:-8184768 | Msa0393910:CDS |
| TTAGTGACAGCAAATTATCA+AGG | 0.576262 | 3_2:-8184831 | Msa0393910:CDS |
| CTGTCAGGATACCTGTTGGA+TGG | 0.577394 | 3_2:-8184526 | Msa0393910:CDS |
| AGCCTCCTATTTCATAGGAA+CGG | 0.579469 | 3_2:+8181704 | None:intergenic |
| AGATTCACAGCTTTGTATGG+CGG | 0.583970 | 3_2:+8186316 | None:intergenic |
| TTGGGATGACAATGATCCAT+CGG | 0.585148 | 3_2:-8184802 | Msa0393910:CDS |
| TTAATCGTTGGAGTCTCAAG+TGG | 0.586204 | 3_2:-8182443 | Msa0393910:CDS |
| GTGGGGTTAAATACTATAGG+AGG | 0.586439 | 3_2:-8185708 | Msa0393910:CDS |
| TTGAATGTTTCCCAACCAGA+AGG | 0.591163 | 3_2:+8186005 | None:intergenic |
| GCTTTGATTCGAACTTTGAG+GGG | 0.596734 | 3_2:+8185609 | None:intergenic |
| TGTTGCTAGCATGGGTGTAG+TGG | 0.606421 | 3_2:-8181763 | Msa0393910:CDS |
| AAAATGGCAATGAACATAGT+GGG | 0.608116 | 3_2:-8183527 | Msa0393910:CDS |
| TATTGTAGTAATGCACATCA+AGG | 0.609097 | 3_2:+8182847 | None:intergenic |
| CTATCAAGATTGACACCTTG+TGG | 0.620469 | 3_2:+8183005 | None:intergenic |
| TGATTGATTTCTTAGCACAA+AGG | 0.624556 | 3_2:-8183449 | Msa0393910:intron |
| TAGTCTAAAGAAGTATTACA+AGG | 0.625277 | 3_2:-8182985 | Msa0393910:CDS |
| AGAGATGGATATATAGAATG+GGG | 0.625469 | 3_2:-8183501 | Msa0393910:CDS |
| TCAGGATACCTGTTGGATGG+TGG | 0.627765 | 3_2:-8184523 | Msa0393910:CDS |
| TCAATCACAGGGACTGTCTG+GGG | 0.633640 | 3_2:+8183465 | None:intergenic |
| GATGCTGTCAGGATACCTGT+TGG | 0.641176 | 3_2:-8184530 | Msa0393910:CDS |
| AGACTTTGAATCTCTTGACA+GGG | 0.663529 | 3_2:-8181727 | Msa0393910:CDS |
| TCTCACCCTTAAGACTTGAG+GGG | 0.663932 | 3_2:+8184707 | None:intergenic |
| GTGCTAAGAAATCAATCACA+GGG | 0.671210 | 3_2:+8183454 | None:intergenic |
| CCCAACCAGAAGGTGAACCA+CGG | 0.677633 | 3_2:+8186015 | None:intergenic |
| TTTATGATTGCAGAAACCAT+GGG | 0.680212 | 3_2:-8183590 | Msa0393910:intron |
| TATCTTTGTGCTGAAGATGG+GGG | 0.680990 | 3_2:-8186059 | Msa0393910:CDS |
| ACTTGACAATGCTTTCACAT+GGG | 0.683824 | 3_2:-8184447 | Msa0393910:CDS |
| ACTGCTATTGTAGCCAACCG+TGG | 0.690449 | 3_2:-8186032 | Msa0393910:CDS |
| TGTGAGAAAATACAACTCAG+AGG | 0.726959 | 3_2:-8182949 | Msa0393910:CDS |
| GAGCTGATGAATGAGCCACA+AGG | 0.730017 | 3_2:-8183020 | Msa0393910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTTTATTTTTTTTG+TGG | + | chr3_2:8181895-8181914 | None:intergenic | 10.0% |
| !!! | TATAATTTTAGATTTTGAAA+TGG | + | chr3_2:8183694-8183713 | None:intergenic | 10.0% |
| !!! | TCTGAAATTTTAAAAAATTT+GGG | + | chr3_2:8183719-8183738 | None:intergenic | 10.0% |
| !!! | TTCTGAAATTTTAAAAAATT+TGG | + | chr3_2:8183720-8183739 | None:intergenic | 10.0% |
| !!! | ATAAAATGAAATATTTTCTT+GGG | + | chr3_2:8184127-8184146 | None:intergenic | 10.0% |
| !!! | TATAAAATGAAATATTTTCT+TGG | + | chr3_2:8184128-8184147 | None:intergenic | 10.0% |
| !! | ATATGTTACAATTTAATTAA+AGG | + | chr3_2:8184374-8184393 | None:intergenic | 10.0% |
| !! | TAATACATATATATGAAATA+TGG | - | chr3_2:8185376-8185395 | Msa0393910:intron | 10.0% |
| !!! | TAAAAAATTCTCATATTTTT+CGG | + | chr3_2:8185848-8185867 | None:intergenic | 10.0% |
| !! | TTCATTTATTAAAGACATTT+AGG | - | chr3_2:8182091-8182110 | Msa0393910:intron | 15.0% |
| !! | CCTATTTATAAAAGAAATTT+AGG | + | chr3_2:8182176-8182195 | None:intergenic | 15.0% |
| !!! | CCTAAATTTCTTTTATAAAT+AGG | - | chr3_2:8182173-8182192 | Msa0393910:intron | 15.0% |
| !! | AAATAATTAGAACTTACAAA+GGG | + | chr3_2:8182237-8182256 | None:intergenic | 15.0% |
| !! | AGATAATTTATATGATTTGA+TGG | + | chr3_2:8182775-8182794 | None:intergenic | 15.0% |
| !! | GTTATGTTAAATTAAAAATG+AGG | + | chr3_2:8182971-8182990 | None:intergenic | 15.0% |
| !!! | GTTTGATCATTTTAATAAAT+TGG | + | chr3_2:8183061-8183080 | None:intergenic | 15.0% |
| !!! | TTAAAATTTAGATGTACTTT+TGG | - | chr3_2:8183638-8183657 | Msa0393910:intron | 15.0% |
| !!! | TGTTTTGAAACTTTAAAAAT+TGG | - | chr3_2:8184267-8184286 | Msa0393910:intron | 15.0% |
| !! | GATTTCAAATTTAAAAATGT+CGG | - | chr3_2:8184298-8184317 | Msa0393910:intron | 15.0% |
| !!! | TAAAGGTTTAAATAAACTTT+TGG | + | chr3_2:8184357-8184376 | None:intergenic | 15.0% |
| !!! | TATATGTTTTTTCTTTTTGT+AGG | - | chr3_2:8185441-8185460 | Msa0393910:intron | 15.0% |
| !!! | ATATGTTTTTTCTTTTTGTA+GGG | - | chr3_2:8185442-8185461 | Msa0393910:intron | 15.0% |
| !!! | AATGCTCTAAATAAAATTGA+GGG | + | chr3_2:8181826-8181845 | None:intergenic | 20.0% |
| !!! | TAATGCTCTAAATAAAATTG+AGG | + | chr3_2:8181827-8181846 | None:intergenic | 20.0% |
| !! | AATTTGAACTTCTTAATACT+AGG | + | chr3_2:8181871-8181890 | None:intergenic | 20.0% |
| !! | ATGTCTTTAATAAATGAAAC+TGG | + | chr3_2:8182089-8182108 | None:intergenic | 20.0% |
| !! | AATGTATCTGGTTAAAAAAT+TGG | + | chr3_2:8182141-8182160 | None:intergenic | 20.0% |
| !! | TCAACAAAAATTAATGTATC+TGG | + | chr3_2:8182153-8182172 | None:intergenic | 20.0% |
| !! | AAAAAGTAAAAATACTCCAT+CGG | + | chr3_2:8182200-8182219 | None:intergenic | 20.0% |
| !! | CAAATAATTAGAACTTACAA+AGG | + | chr3_2:8182238-8182257 | None:intergenic | 20.0% |
| !! | AAGAAACATTTCAGATTATA+AGG | - | chr3_2:8182391-8182410 | Msa0393910:intron | 20.0% |
| !!! | TTTTAATCAAGTTATGTACT+CGG | - | chr3_2:8182511-8182530 | Msa0393910:CDS | 20.0% |
| !! | AAAAACATAATAACCGATAT+AGG | + | chr3_2:8182593-8182612 | None:intergenic | 20.0% |
| !! | GTAACATAAAGAAACAATTT+AGG | + | chr3_2:8182621-8182640 | None:intergenic | 20.0% |
| !! | TCACAAGTGATATTATAAAA+GGG | + | chr3_2:8184184-8184203 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTATGATGCATT+AGG | + | chr3_2:8184227-8184246 | None:intergenic | 20.0% |
| !! | AAAAAAAACTCCAAATTCAA+TGG | - | chr3_2:8184237-8184256 | Msa0393910:intron | 20.0% |
| !!! | TTTGAAACTTTAAAAATTGG+AGG | - | chr3_2:8184270-8184289 | Msa0393910:intron | 20.0% |
| !! | ATCTAATTTCTTCTCTATAT+TGG | - | chr3_2:8184627-8184646 | Msa0393910:intron | 20.0% |
| !! | ATAAATGAAGAATATAAGAG+AGG | - | chr3_2:8184696-8184715 | Msa0393910:intron | 20.0% |
| !! | AACTCATGCATATTATATAT+TGG | - | chr3_2:8185411-8185430 | Msa0393910:intron | 20.0% |
| !! | ACTCATGCATATTATATATT+GGG | - | chr3_2:8185412-8185431 | Msa0393910:intron | 20.0% |
| !!! | TATGTTTTTTCTTTTTGTAG+GGG | - | chr3_2:8185443-8185462 | Msa0393910:intron | 20.0% |
| !!! | ATGAGAATTTTTTAGTAGTA+AGG | - | chr3_2:8185854-8185873 | Msa0393910:intron | 20.0% |
| !!! | TGAGAATTTTTTAGTAGTAA+GGG | - | chr3_2:8185855-8185874 | Msa0393910:intron | 20.0% |
| !!! | CTTTTGGAATAAAAATAAGA+AGG | - | chr3_2:8186195-8186214 | Msa0393910:intron | 20.0% |
| !!! | CATTGTGTATGTTTTGATTT+AGG | - | chr3_2:8181912-8181931 | Msa0393910:intron | 25.0% |
| ! | GTGTTCAACAAAAAATTTGT+GGG | - | chr3_2:8182309-8182328 | Msa0393910:intron | 25.0% |
| ! | TGTTCAACAAAAAATTTGTG+GGG | - | chr3_2:8182310-8182329 | Msa0393910:intron | 25.0% |
| !!! | ATCAAATGATCTATTTTTGC+AGG | - | chr3_2:8182449-8182468 | Msa0393910:CDS | 25.0% |
| !! | AATTCAAATTGATTAGCTAG+AGG | + | chr3_2:8182490-8182509 | None:intergenic | 25.0% |
| !! | GTTTGATCATTTTCCTATAT+CGG | - | chr3_2:8182577-8182596 | Msa0393910:intron | 25.0% |
| ! | ACATAAAGAAACAATTTAGG+TGG | + | chr3_2:8182618-8182637 | None:intergenic | 25.0% |
| ! | GAAAAAAGATGTTATGACAT+TGG | + | chr3_2:8182848-8182867 | None:intergenic | 25.0% |
| ! | CTTCATAAATATATGGTTAG+AGG | + | chr3_2:8183169-8183188 | None:intergenic | 25.0% |
| ! | CTCTAACCATATATTTATGA+AGG | - | chr3_2:8183167-8183186 | Msa0393910:intron | 25.0% |
| ! | ATTGAGCCTTCATAAATATA+TGG | + | chr3_2:8183176-8183195 | None:intergenic | 25.0% |
| ! | AAATTATCAAGGCACAAATT+GGG | - | chr3_2:8183215-8183234 | Msa0393910:intron | 25.0% |
| ! | ACAATTGTAAACACATTACA+AGG | - | chr3_2:8183267-8183286 | Msa0393910:intron | 25.0% |
| ! | AGCTCAAAATAAAGATGATA+CGG | + | chr3_2:8183410-8183429 | None:intergenic | 25.0% |
| ! | TTCAGATTTATGTCACAAAA+TGG | - | chr3_2:8183478-8183497 | Msa0393910:CDS | 25.0% |
| ! | TAAAAGGGAGATATTAACAA+CGG | + | chr3_2:8184169-8184188 | None:intergenic | 25.0% |
| ! | GTCACAAGTGATATTATAAA+AGG | + | chr3_2:8184185-8184204 | None:intergenic | 25.0% |
| ! | ATGCATTAGGTTAAAAAATG+AGG | + | chr3_2:8184214-8184233 | None:intergenic | 25.0% |
| ! | AAGAGATGGATATATAGAAT+GGG | - | chr3_2:8184533-8184552 | Msa0393910:CDS | 25.0% |
| ! | TATTGGAATTTAAGTATGAG+TGG | - | chr3_2:8184644-8184663 | Msa0393910:intron | 25.0% |
| ! | GTCACATATTGGATATTAAT+AGG | - | chr3_2:8184673-8184692 | Msa0393910:intron | 25.0% |
| ! | TGTATACAGAATAAATGTAG+TGG | - | chr3_2:8184724-8184743 | Msa0393910:CDS | 25.0% |
| ! | CATCATATATCATATATTCC+TGG | + | chr3_2:8184913-8184932 | None:intergenic | 25.0% |
| !!! | CTTGAATTAAATTTGTTGAC+AGG | - | chr3_2:8184962-8184981 | Msa0393910:intron | 25.0% |
| !!! | ATTAAATTTGTTGACAGGTA+TGG | - | chr3_2:8184967-8184986 | Msa0393910:intron | 25.0% |
| ! | TATGGTAATAAACCAAGTTT+AGG | - | chr3_2:8184985-8185004 | Msa0393910:intron | 25.0% |
| !!! | TAGTCTAAAGAAGTATTACA+AGG | - | chr3_2:8185050-8185069 | Msa0393910:intron | 25.0% |
| !! | TGCATTACTACAATATGTTT+TGG | - | chr3_2:8185196-8185215 | Msa0393910:intron | 25.0% |
| !! | GCATTACTACAATATGTTTT+GGG | - | chr3_2:8185197-8185216 | Msa0393910:intron | 25.0% |
| !!! | ACAAATGCTCTTACTTTTAT+AGG | - | chr3_2:8185303-8185322 | Msa0393910:intron | 25.0% |
| ! | TATAATATGCATGAGTTAGT+TGG | + | chr3_2:8185408-8185427 | None:intergenic | 25.0% |
| ! | CTCATGCATATTATATATTG+GGG | - | chr3_2:8185413-8185432 | Msa0393910:intron | 25.0% |
| !!! | AATTTTTTAGTAGTAAGGGT+GGG | - | chr3_2:8185859-8185878 | Msa0393910:intron | 25.0% |
| AATTGTCAACAAAGATCTCT+TGG | - | chr3_2:8181793-8181812 | Msa0393910:intron | 30.0% | |
| TTGAACTTCTTAATACTAGG+AGG | + | chr3_2:8181868-8181887 | None:intergenic | 30.0% | |
| !!! | GTGTATGTTTTGATTTAGGA+TGG | - | chr3_2:8181916-8181935 | Msa0393910:intron | 30.0% |
| AAATATCTTTGTGCTGAAGA+TGG | - | chr3_2:8181973-8181992 | Msa0393910:intron | 30.0% | |
| AATATCTTTGTGCTGAAGAT+GGG | - | chr3_2:8181974-8181993 | Msa0393910:intron | 30.0% | |
| ! | TCTTTTATAAATAGGTCCGA+TGG | - | chr3_2:8182181-8182200 | Msa0393910:intron | 30.0% |
| TAATTAGAACTTACAAAGGG+TGG | + | chr3_2:8182234-8182253 | None:intergenic | 30.0% | |
| ! | ATGACTCATCCTTCAATTTT+AGG | - | chr3_2:8182286-8182305 | Msa0393910:intron | 30.0% |
| ! | TGACTCATCCTTCAATTTTA+GGG | - | chr3_2:8182287-8182306 | Msa0393910:intron | 30.0% |
| GGTGTTCAACAAAAAATTTG+TGG | - | chr3_2:8182308-8182327 | Msa0393910:intron | 30.0% | |
| TTTGTGGGGTTAAATACTAT+AGG | - | chr3_2:8182324-8182343 | Msa0393910:intron | 30.0% | |
| TGAAATGTTTCTTTGTTGCT+AGG | + | chr3_2:8182384-8182403 | None:intergenic | 30.0% | |
| GTTAGTGCAATTGAAAACAT+CGG | - | chr3_2:8182683-8182702 | Msa0393910:intron | 30.0% | |
| TTAGTGCAATTGAAAACATC+GGG | - | chr3_2:8182684-8182703 | Msa0393910:intron | 30.0% | |
| !! | GTTTTCTGAAGGGTTATTAT+GGG | + | chr3_2:8182750-8182769 | None:intergenic | 30.0% |
| !! | TGTTTTCTGAAGGGTTATTA+TGG | + | chr3_2:8182751-8182770 | None:intergenic | 30.0% |
| !! | TTTGATGGATGTTTTCTGAA+GGG | + | chr3_2:8182760-8182779 | None:intergenic | 30.0% |
| !! | ATTTGATGGATGTTTTCTGA+AGG | + | chr3_2:8182761-8182780 | None:intergenic | 30.0% |
| AAGATCTAATCCCAATAACA+CGG | + | chr3_2:8182902-8182921 | None:intergenic | 30.0% | |
| TTAGTGACAGCAAATTATCA+AGG | - | chr3_2:8183204-8183223 | Msa0393910:intron | 30.0% | |
| CAAATTATCAAGGCACAAAT+TGG | - | chr3_2:8183214-8183233 | Msa0393910:intron | 30.0% | |
| ATTGTCATATGAAAAACCGA+TGG | + | chr3_2:8183252-8183271 | None:intergenic | 30.0% | |
| TACCAACTTACTAATGGTTA+TGG | - | chr3_2:8183294-8183313 | Msa0393910:intron | 30.0% | |
| !! | GACTTGTTGAAATTCTTTGA+TGG | - | chr3_2:8183380-8183399 | Msa0393910:intron | 30.0% |
| ! | TTTTGCTAACAAGTGTCTTA+AGG | + | chr3_2:8183949-8183968 | None:intergenic | 30.0% |
| TCTATGACTTTCAAACTCAT+TGG | + | chr3_2:8183990-8184009 | None:intergenic | 30.0% | |
| AAAAGGGAGATATTAACAAC+GGG | + | chr3_2:8184168-8184187 | None:intergenic | 30.0% | |
| CATTAGGTTAAAAAATGAGG+TGG | + | chr3_2:8184211-8184230 | None:intergenic | 30.0% | |
| AAAAACTCCAAATTCAATGG+TGG | - | chr3_2:8184240-8184259 | Msa0393910:intron | 30.0% | |
| AAAACTCCAAATTCAATGGT+GGG | - | chr3_2:8184241-8184260 | Msa0393910:intron | 30.0% | |
| ! | TTTTATGATTGCAGAAACCA+TGG | - | chr3_2:8184444-8184463 | Msa0393910:CDS | 30.0% |
| TTTATGATTGCAGAAACCAT+GGG | - | chr3_2:8184445-8184464 | Msa0393910:CDS | 30.0% | |
| AAAATGGCAATGAACATAGT+GGG | - | chr3_2:8184508-8184527 | Msa0393910:CDS | 30.0% | |
| CAAGAGATGGATATATAGAA+TGG | - | chr3_2:8184532-8184551 | Msa0393910:CDS | 30.0% | |
| AGAGATGGATATATAGAATG+GGG | - | chr3_2:8184534-8184553 | Msa0393910:CDS | 30.0% | |
| ! | TGATTGATTTCTTAGCACAA+AGG | - | chr3_2:8184586-8184605 | Msa0393910:CDS | 30.0% |
| TGTAATCATGTCAAATCCAT+TGG | - | chr3_2:8185113-8185132 | Msa0393910:intron | 30.0% | |
| TATTGTAGTAATGCACATCA+AGG | + | chr3_2:8185191-8185210 | None:intergenic | 30.0% | |
| !!! | ATGTTTTGGGACAAATTCAA+TGG | - | chr3_2:8185210-8185229 | Msa0393910:intron | 30.0% |
| ! | TTTTTCTTTTTGTAGGGGAA+TGG | - | chr3_2:8185448-8185467 | Msa0393910:intron | 30.0% |
| ! | TTGCTTAGATGCATTTTGTA+TGG | + | chr3_2:8185487-8185506 | None:intergenic | 30.0% |
| ACGATTAAACTGACATTTGT+AGG | + | chr3_2:8185580-8185599 | None:intergenic | 30.0% | |
| ACAAATGTCAGTTTAATCGT+TGG | - | chr3_2:8185580-8185599 | Msa0393910:intron | 30.0% | |
| !!! | GAATTTTTTAGTAGTAAGGG+TGG | - | chr3_2:8185858-8185877 | Msa0393910:intron | 30.0% |
| !!! | ATTTTTTAGTAGTAAGGGTG+GGG | - | chr3_2:8185860-8185879 | Msa0393910:intron | 30.0% |
| TCTTTAAGCAACACCTATAT+TGG | - | chr3_2:8186003-8186022 | Msa0393910:intron | 30.0% | |
| CAATTGAGTTCTTCCAATAT+AGG | + | chr3_2:8186019-8186038 | None:intergenic | 30.0% | |
| ! | ACCTGCTTAGTGATATTTTT+GGG | + | chr3_2:8186154-8186173 | None:intergenic | 30.0% |
| ! | AACCTGCTTAGTGATATTTT+TGG | + | chr3_2:8186155-8186174 | None:intergenic | 30.0% |
| !!! | GGTTTTTTCTTCCATTGTTT+AGG | - | chr3_2:8186171-8186190 | Msa0393910:intron | 30.0% |
| ATTCCAAAAGACCTAAACAA+TGG | + | chr3_2:8186185-8186204 | None:intergenic | 30.0% | |
| ATGAAACCTTCTCTCTTTGA+AGG | - | chr3_2:8181770-8181789 | Msa0393910:CDS | 35.0% | |
| ACAATTCCTTCAAAGAGAGA+AGG | + | chr3_2:8181779-8181798 | None:intergenic | 35.0% | |
| ATATCTTTGTGCTGAAGATG+GGG | - | chr3_2:8181975-8181994 | Msa0393910:intron | 35.0% | |
| !! | TGCTCATTAATTTGCAGCTT+TGG | - | chr3_2:8182256-8182275 | Msa0393910:intron | 35.0% |
| !! | TCATTAATTTGCAGCTTTGG+AGG | - | chr3_2:8182259-8182278 | Msa0393910:intron | 35.0% |
| !! | CATTAATTTGCAGCTTTGGA+GGG | - | chr3_2:8182260-8182279 | Msa0393910:intron | 35.0% |
| GTTGAACACCCTAAAATTGA+AGG | + | chr3_2:8182298-8182317 | None:intergenic | 35.0% | |
| ! | TGCTTTGATTCGAACTTTGA+GGG | + | chr3_2:8182430-8182449 | None:intergenic | 35.0% |
| ! | ATGCTTTGATTCGAACTTTG+AGG | + | chr3_2:8182431-8182450 | None:intergenic | 35.0% |
| ATTAGCTAGAGGATGGAATA+AGG | + | chr3_2:8182479-8182498 | None:intergenic | 35.0% | |
| ! | CAAATTGATTAGCTAGAGGA+TGG | + | chr3_2:8182486-8182505 | None:intergenic | 35.0% |
| AAAGGTGGGAAATAGACTAA+CGG | + | chr3_2:8182656-8182675 | None:intergenic | 35.0% | |
| CTATTTCCCACCTTTAACAA+CGG | - | chr3_2:8182661-8182680 | Msa0393910:intron | 35.0% | |
| ATTGCACTAACCGTTGTTAA+AGG | + | chr3_2:8182674-8182693 | None:intergenic | 35.0% | |
| ! | TTTTCACTTGCAAAGTAGCT+TGG | - | chr3_2:8182863-8182882 | Msa0393910:CDS | 35.0% |
| AATCAACTTGACCGTGTTAT+TGG | - | chr3_2:8182888-8182907 | Msa0393910:CDS | 35.0% | |
| ! | ATCAACTTGACCGTGTTATT+GGG | - | chr3_2:8182889-8182908 | Msa0393910:CDS | 35.0% |
| GTTAGAGGATTCACAATTCT+AGG | + | chr3_2:8183154-8183173 | None:intergenic | 35.0% | |
| GACCATAACCATTAGTAAGT+TGG | + | chr3_2:8183299-8183318 | None:intergenic | 35.0% | |
| !! | AAAATGGATTAGATGCTGTC+AGG | - | chr3_2:8183494-8183513 | Msa0393910:CDS | 35.0% |
| ACTTGACAATGCTTTCACAT+GGG | - | chr3_2:8183588-8183607 | Msa0393910:intron | 35.0% | |
| ATTTCTTAACAGCTGTCCTA+GGG | + | chr3_2:8183796-8183815 | None:intergenic | 35.0% | |
| AATTTCTTAACAGCTGTCCT+AGG | + | chr3_2:8183797-8183816 | None:intergenic | 35.0% | |
| TGACTTTCAAACTCATTGGT+CGG | + | chr3_2:8183986-8184005 | None:intergenic | 35.0% | |
| AAAGGGAGATATTAACAACG+GGG | + | chr3_2:8184167-8184186 | None:intergenic | 35.0% | |
| AAACTCCAAATTCAATGGTG+GGG | - | chr3_2:8184242-8184261 | Msa0393910:intron | 35.0% | |
| GCAATTGAAGGTTCTCAAAA+TGG | - | chr3_2:8184492-8184511 | Msa0393910:CDS | 35.0% | |
| CAAAATGGCAATGAACATAG+TGG | - | chr3_2:8184507-8184526 | Msa0393910:CDS | 35.0% | |
| GTGCTAAGAAATCAATCACA+GGG | + | chr3_2:8184584-8184603 | None:intergenic | 35.0% | |
| TGTGCTAAGAAATCAATCAC+AGG | + | chr3_2:8184585-8184604 | None:intergenic | 35.0% | |
| TGGAATTTAAGTATGAGTGG+TGG | - | chr3_2:8184647-8184666 | Msa0393910:intron | 35.0% | |
| CTTGAGAGAAACATACTTGT+AGG | + | chr3_2:8184775-8184794 | None:intergenic | 35.0% | |
| GGTAATAAACCAAGTTTAGG+AGG | - | chr3_2:8184988-8185007 | Msa0393910:intron | 35.0% | |
| TGTGAGAAAATACAACTCAG+AGG | - | chr3_2:8185086-8185105 | Msa0393910:intron | 35.0% | |
| ATCATGTCAAATCCATTGGA+TGG | - | chr3_2:8185117-8185136 | Msa0393910:intron | 35.0% | |
| TAACCAATGTGTGTGTGATA+GGG | - | chr3_2:8185340-8185359 | Msa0393910:intron | 35.0% | |
| ! | CATACATTTGAAGCGATGTT+GGG | + | chr3_2:8185750-8185769 | None:intergenic | 35.0% |
| !!! | TTTTTTAGTAGTAAGGGTGG+GGG | - | chr3_2:8185861-8185880 | Msa0393910:intron | 35.0% |
| TCAATTGCACATAGATTCCT+GGG | - | chr3_2:8186032-8186051 | Msa0393910:CDS | 35.0% | |
| ACCCAAAAATATCACTAAGC+AGG | - | chr3_2:8186150-8186169 | Msa0393910:intron | 35.0% | |
| ! | CTTCCATTGTTTAGGTCTTT+TGG | - | chr3_2:8186179-8186198 | Msa0393910:intron | 35.0% |
| AAGACTTTGAATCTCTTGAC+AGG | - | chr3_2:8186307-8186326 | Msa0393910:CDS | 35.0% | |
| AGACTTTGAATCTCTTGACA+GGG | - | chr3_2:8186308-8186327 | Msa0393910:CDS | 35.0% | |
| ! | AGATTCACAGCTTTGTATGG+CGG | + | chr3_2:8181722-8181741 | None:intergenic | 40.0% |
| ! | CCTAGATTCACAGCTTTGTA+TGG | + | chr3_2:8181725-8181744 | None:intergenic | 40.0% |
| CCATACAAAGCTGTGAATCT+AGG | - | chr3_2:8181722-8181741 | Msa0393910:CDS | 40.0% | |
| AAGCTGTGAATCTAGGAAAC+TGG | - | chr3_2:8181729-8181748 | Msa0393910:CDS | 40.0% | |
| !!! | GAATCTAGGAAACTGGCTTT+TGG | - | chr3_2:8181736-8181755 | Msa0393910:CDS | 40.0% |
| TATCTTTGTGCTGAAGATGG+GGG | - | chr3_2:8181976-8181995 | Msa0393910:intron | 40.0% | |
| TTGAATGTTTCCCAACCAGA+AGG | + | chr3_2:8182033-8182052 | None:intergenic | 40.0% | |
| GTGGGGTTAAATACTATAGG+AGG | - | chr3_2:8182327-8182346 | Msa0393910:intron | 40.0% | |
| GGGTTAAATACTATAGGAGG+AGG | - | chr3_2:8182330-8182349 | Msa0393910:intron | 40.0% | |
| ! | GCTTTGATTCGAACTTTGAG+GGG | + | chr3_2:8182429-8182448 | None:intergenic | 40.0% |
| CACTAACCGTTGTTAAAGGT+GGG | + | chr3_2:8182670-8182689 | None:intergenic | 40.0% | |
| TTGAAAACATCGGGCCATTA+AGG | - | chr3_2:8182693-8182712 | Msa0393910:intron | 40.0% | |
| GCAATGGACAAAGACCTTAA+TGG | + | chr3_2:8182710-8182729 | None:intergenic | 40.0% | |
| ATGGGAGACATATATTCTCG+CGG | + | chr3_2:8182732-8182751 | None:intergenic | 40.0% | |
| TGTCTTAATCGTTGCTGACA+GGG | + | chr3_2:8182811-8182830 | None:intergenic | 40.0% | |
| ! | CTTTTCTCGAATCACTGACA+TGG | + | chr3_2:8182932-8182951 | None:intergenic | 40.0% |
| TTGGGATGACAATGATCCAT+CGG | - | chr3_2:8183233-8183252 | Msa0393910:intron | 40.0% | |
| !! | GGAGAGTACCAACTTACTAA+TGG | - | chr3_2:8183288-8183307 | Msa0393910:intron | 40.0% |
| TTCTCACCCTTAAGACTTGA+GGG | + | chr3_2:8183332-8183351 | None:intergenic | 40.0% | |
| ATTCTCACCCTTAAGACTTG+AGG | + | chr3_2:8183333-8183352 | None:intergenic | 40.0% | |
| !! | TTGAGCTTTGTTTGCTTTGC+AGG | - | chr3_2:8183423-8183442 | Msa0393910:intron | 40.0% |
| ! | CTTAGGTGGATTTGGATCAT+AGG | + | chr3_2:8183542-8183561 | None:intergenic | 40.0% |
| ! | ACAAAAGGCTTAGGTGGATT+TGG | + | chr3_2:8183550-8183569 | None:intergenic | 40.0% |
| ! | AATCCACCTAAGCCTTTTGT+CGG | - | chr3_2:8183550-8183569 | Msa0393910:CDS | 40.0% |
| CACTTGACAATGCTTTCACA+TGG | - | chr3_2:8183587-8183606 | Msa0393910:intron | 40.0% | |
| !! | GAAATGCTAAAAAGTGCCCT+AGG | - | chr3_2:8183777-8183796 | Msa0393910:intron | 40.0% |
| ACATTCCCCACCATTGAATT+TGG | + | chr3_2:8184250-8184269 | None:intergenic | 40.0% | |
| ! | AGTGGTGGTTAGTCACATAT+TGG | - | chr3_2:8184662-8184681 | Msa0393910:intron | 40.0% |
| TCCACTCACACTTAAATTCC+AGG | - | chr3_2:8184892-8184911 | Msa0393910:intron | 40.0% | |
| TCCTGGAATTTAAGTGTGAG+TGG | + | chr3_2:8184896-8184915 | None:intergenic | 40.0% | |
| AGCTCTATTCCTCCTAAACT+TGG | + | chr3_2:8185000-8185019 | None:intergenic | 40.0% | |
| CTATCAAGATTGACACCTTG+TGG | + | chr3_2:8185033-8185052 | None:intergenic | 40.0% | |
| !! | GCTTTAGAATCTCCATCCAA+TGG | + | chr3_2:8185132-8185151 | None:intergenic | 40.0% |
| ! | GCTCTTCTCTCATTTGTTAG+TGG | - | chr3_2:8185150-8185169 | Msa0393910:intron | 40.0% |
| ! | CACACACATTGGTTAGGATT+TGG | + | chr3_2:8185335-8185354 | None:intergenic | 40.0% |
| ! | CTATCACACACACATTGGTT+AGG | + | chr3_2:8185341-8185360 | None:intergenic | 40.0% |
| CTAACCAATGTGTGTGTGAT+AGG | - | chr3_2:8185339-8185358 | Msa0393910:intron | 40.0% | |
| ! | TCTTTTTGTAGGGGAATGGA+CGG | - | chr3_2:8185452-8185471 | Msa0393910:intron | 40.0% |
| ATACACATCCAATTGCGCTT+GGG | + | chr3_2:8185526-8185545 | None:intergenic | 40.0% | |
| AATACACATCCAATTGCGCT+TGG | + | chr3_2:8185527-8185546 | None:intergenic | 40.0% | |
| CGCAATTGGATGTGTATTCT+CGG | - | chr3_2:8185529-8185548 | Msa0393910:intron | 40.0% | |
| GCAATTGGATGTGTATTCTC+GGG | - | chr3_2:8185530-8185549 | Msa0393910:intron | 40.0% | |
| ! | CAACATTTGGATGGGCTTAT+TGG | - | chr3_2:8185553-8185572 | Msa0393910:intron | 40.0% |
| TTAATCGTTGGAGTCTCAAG+TGG | - | chr3_2:8185592-8185611 | Msa0393910:CDS | 40.0% | |
| ! | TGAGGGATTTCGAGTAACAT+GGG | - | chr3_2:8185682-8185701 | Msa0393910:CDS | 40.0% |
| ! | GCATACATTTGAAGCGATGT+TGG | + | chr3_2:8185751-8185770 | None:intergenic | 40.0% |
| AGTAACCACAGTACATGCAA+GGG | + | chr3_2:8185897-8185916 | None:intergenic | 40.0% | |
| CTCAATTGCACATAGATTCC+TGG | - | chr3_2:8186031-8186050 | Msa0393910:CDS | 40.0% | |
| GCACTAACCGTTGTTAAAGG+TGG | + | chr3_2:8182671-8182690 | None:intergenic | 45.0% | |
| GACATATATTCTCGCGGCAA+TGG | + | chr3_2:8182726-8182745 | None:intergenic | 45.0% | |
| GTGTCTTAATCGTTGCTGAC+AGG | + | chr3_2:8182812-8182831 | None:intergenic | 45.0% | |
| ATAGAGCCCCTCAAGTCTTA+AGG | - | chr3_2:8183322-8183341 | Msa0393910:intron | 45.0% | |
| TAGAGCCCCTCAAGTCTTAA+GGG | - | chr3_2:8183323-8183342 | Msa0393910:intron | 45.0% | |
| TCTCACCCTTAAGACTTGAG+GGG | + | chr3_2:8183331-8183350 | None:intergenic | 45.0% | |
| ! | TGTTTGCTTTGCAGGAGCAT+TGG | - | chr3_2:8183431-8183450 | Msa0393910:intron | 45.0% |
| ! | ATCCACCTAAGCCTTTTGTC+GGG | - | chr3_2:8183551-8183570 | Msa0393910:CDS | 45.0% |
| CCACAATCACTTTCATCCCA+TGG | + | chr3_2:8184464-8184483 | None:intergenic | 45.0% | |
| CCATGGGATGAAAGTGATTG+TGG | - | chr3_2:8184461-8184480 | Msa0393910:CDS | 45.0% | |
| GTGGACTTGCATGCAATTGA+AGG | - | chr3_2:8184480-8184499 | Msa0393910:CDS | 45.0% | |
| ! | GAACATAGTGGGACAAGAGA+TGG | - | chr3_2:8184519-8184538 | Msa0393910:CDS | 45.0% |
| ATCAATCACAGGGACTGTCT+GGG | + | chr3_2:8184574-8184593 | None:intergenic | 45.0% | |
| AATCAATCACAGGGACTGTC+TGG | + | chr3_2:8184575-8184594 | None:intergenic | 45.0% | |
| !! | GAAAGAGCATCAGATCTTGC+TGG | - | chr3_2:8185270-8185289 | Msa0393910:intron | 45.0% |
| CATCCCTATCACACACACAT+TGG | + | chr3_2:8185346-8185365 | None:intergenic | 45.0% | |
| ! | CTTTTTGTAGGGGAATGGAC+GGG | - | chr3_2:8185453-8185472 | Msa0393910:intron | 45.0% |
| GTGTATTCTCGGGCAACATT+TGG | - | chr3_2:8185540-8185559 | Msa0393910:intron | 45.0% | |
| ATTCTCGGGCAACATTTGGA+TGG | - | chr3_2:8185544-8185563 | Msa0393910:intron | 45.0% | |
| TTCTCGGGCAACATTTGGAT+GGG | - | chr3_2:8185545-8185564 | Msa0393910:intron | 45.0% | |
| CTCAAGTGGATGATCGAGAA+TGG | - | chr3_2:8185606-8185625 | Msa0393910:CDS | 45.0% | |
| ACCAACAGATAGCTTTCGAC+AGG | - | chr3_2:8185656-8185675 | Msa0393910:CDS | 45.0% | |
| TCCTGTCGAAAGCTATCTGT+TGG | + | chr3_2:8185660-8185679 | None:intergenic | 45.0% | |
| ATAGCTTTCGACAGGATGTG+AGG | - | chr3_2:8185664-8185683 | Msa0393910:CDS | 45.0% | |
| TAGCTTTCGACAGGATGTGA+GGG | - | chr3_2:8185665-8185684 | Msa0393910:CDS | 45.0% | |
| ! | GTGAGGGATTTCGAGTAACA+TGG | - | chr3_2:8185681-8185700 | Msa0393910:CDS | 45.0% |
| ! | GATTTCGAGTAACATGGGAG+AGG | - | chr3_2:8185687-8185706 | Msa0393910:CDS | 45.0% |
| ! | CATTTGAAGCGATGTTGGGT+TGG | + | chr3_2:8185746-8185765 | None:intergenic | 45.0% |
| AAACACCCTTGCATGTACTG+TGG | - | chr3_2:8185889-8185908 | Msa0393910:intron | 45.0% | |
| GAGTAACCACAGTACATGCA+AGG | + | chr3_2:8185898-8185917 | None:intergenic | 45.0% | |
| CCTACAATGTATTCTTGCCC+AGG | + | chr3_2:8186052-8186071 | None:intergenic | 45.0% | |
| CCTGGGCAAGAATACATTGT+AGG | - | chr3_2:8186049-8186068 | Msa0393910:CDS | 45.0% | |
| TGCAGTAACTGTTGCTAGCA+TGG | - | chr3_2:8186263-8186282 | Msa0393910:CDS | 45.0% | |
| GCAGTAACTGTTGCTAGCAT+GGG | - | chr3_2:8186264-8186283 | Msa0393910:CDS | 45.0% | |
| !!! | TTTTTAAAATAGAAATTAAT+TGG | + | chr3_2:8183900-8183919 | None:intergenic | 5.0% |
| !! | AAATAGAATAATATATTAAA+TGG | + | chr3_2:8184854-8184873 | None:intergenic | 5.0% |
| !!! | AGGAAACTGGCTTTTGGCTG+AGG | - | chr3_2:8181742-8181761 | Msa0393910:CDS | 50.0% |
| !!! | GGAAACTGGCTTTTGGCTGA+GGG | - | chr3_2:8181743-8181762 | Msa0393910:CDS | 50.0% |
| ACTGCTATTGTAGCCAACCG+TGG | - | chr3_2:8182003-8182022 | Msa0393910:intron | 50.0% | |
| AAGACTTGAGGGGCTCTATC+TGG | + | chr3_2:8183321-8183340 | None:intergenic | 50.0% | |
| GATGCTGTCAGGATACCTGT+TGG | - | chr3_2:8183505-8183524 | Msa0393910:CDS | 50.0% | |
| CTGTCAGGATACCTGTTGGA+TGG | - | chr3_2:8183509-8183528 | Msa0393910:CDS | 50.0% | |
| TCAGGATACCTGTTGGATGG+TGG | - | chr3_2:8183512-8183531 | Msa0393910:CDS | 50.0% | |
| TAGGCTATCCACCATCCAAC+AGG | + | chr3_2:8183523-8183542 | None:intergenic | 50.0% | |
| ! | TCCACCTAAGCCTTTTGTCG+GGG | - | chr3_2:8183552-8183571 | Msa0393910:CDS | 50.0% |
| TCAATCACAGGGACTGTCTG+GGG | + | chr3_2:8184573-8184592 | None:intergenic | 50.0% | |
| GAGCTGATGAATGAGCCACA+AGG | - | chr3_2:8185015-8185034 | Msa0393910:intron | 50.0% | |
| ! | ATTGCGCTTGGGCGAAGTTT+TGG | + | chr3_2:8185515-8185534 | None:intergenic | 50.0% |
| AAACTTCGCCCAAGCGCAAT+TGG | - | chr3_2:8185515-8185534 | Msa0393910:intron | 50.0% | |
| AGAGCAACCGTCCTAGATGT+AGG | - | chr3_2:8185710-8185729 | Msa0393910:CDS | 50.0% | |
| GAGCAACCGTCCTAGATGTA+GGG | - | chr3_2:8185711-8185730 | Msa0393910:CDS | 50.0% | |
| AGCAACCGTCCTAGATGTAG+GGG | - | chr3_2:8185712-8185731 | Msa0393910:CDS | 50.0% | |
| AAGACCCCCTACATCTAGGA+CGG | + | chr3_2:8185720-8185739 | None:intergenic | 50.0% | |
| GCAAAAGACCCCCTACATCT+AGG | + | chr3_2:8185724-8185743 | None:intergenic | 50.0% | |
| TGTTGCTAGCATGGGTGTAG+TGG | - | chr3_2:8186272-8186291 | Msa0393910:CDS | 50.0% | |
| !!! | ACTGGCTTTTGGCTGAGGGA+TGG | - | chr3_2:8181747-8181766 | Msa0393910:CDS | 55.0% |
| CTTTGTGCTGAAGATGGGGG+AGG | - | chr3_2:8181979-8181998 | Msa0393910:intron | 55.0% | |
| ACCAGAAGGTGAACCACGGT+TGG | + | chr3_2:8182019-8182038 | None:intergenic | 55.0% | |
| ACCGTGGTTCACCTTCTGGT+TGG | - | chr3_2:8182019-8182038 | Msa0393910:intron | 55.0% | |
| CCCAACCAGAAGGTGAACCA+CGG | + | chr3_2:8182023-8182042 | None:intergenic | 55.0% | |
| ! | CCGTGGTTCACCTTCTGGTT+GGG | - | chr3_2:8182020-8182039 | Msa0393910:intron | 55.0% |
| ! | CCACCTAAGCCTTTTGTCGG+GGG | - | chr3_2:8183553-8183572 | Msa0393910:CDS | 55.0% |
| GATCCCCCGACAAAAGGCTT+AGG | + | chr3_2:8183559-8183578 | None:intergenic | 55.0% | |
| ! | GCCTTTTGTCGGGGGATCTT+TGG | - | chr3_2:8183561-8183580 | Msa0393910:CDS | 55.0% |
| GCCAAAGATCCCCCGACAAA+AGG | + | chr3_2:8183565-8183584 | None:intergenic | 55.0% | |
| GCAACCGTCCTAGATGTAGG+GGG | - | chr3_2:8185713-8185732 | Msa0393910:CDS | 55.0% | |
| GCCAACCGTGGTTCACCTTC+TGG | - | chr3_2:8182015-8182034 | Msa0393910:intron | 60.0% | |
| CCCCCGACAAAAGGCTTAGG+TGG | + | chr3_2:8183556-8183575 | None:intergenic | 60.0% | |
| TAGGGGAATGGACGGGTGAG+TGG | - | chr3_2:8185460-8185479 | Msa0393910:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 8181710 | 8186347 | 8181710 | ID=Msa0393910;Name=Msa0393910 |
| chr3_2 | mRNA | 8181710 | 8186347 | 8181710 | ID=Msa0393910-mRNA-1;Parent=Msa0393910;Name=Msa0393910-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0.12|0|0.88|1|1|9|0|494 |
| chr3_2 | exon | 8186243 | 8186347 | 8186243 | ID=Msa0393910-mRNA-1:exon:2113;Parent=Msa0393910-mRNA-1 |
| chr3_2 | exon | 8186004 | 8186123 | 8186004 | ID=Msa0393910-mRNA-1:exon:2112;Parent=Msa0393910-mRNA-1 |
| chr3_2 | exon | 8185587 | 8185784 | 8185587 | ID=Msa0393910-mRNA-1:exon:2111;Parent=Msa0393910-mRNA-1 |
| chr3_2 | exon | 8184713 | 8184868 | 8184713 | ID=Msa0393910-mRNA-1:exon:2110;Parent=Msa0393910-mRNA-1 |
| chr3_2 | exon | 8184443 | 8184612 | 8184443 | ID=Msa0393910-mRNA-1:exon:2109;Parent=Msa0393910-mRNA-1 |
| chr3_2 | exon | 8183450 | 8183599 | 8183450 | ID=Msa0393910-mRNA-1:exon:2108;Parent=Msa0393910-mRNA-1 |
| chr3_2 | exon | 8182733 | 8183073 | 8182733 | ID=Msa0393910-mRNA-1:exon:2107;Parent=Msa0393910-mRNA-1 |
| chr3_2 | exon | 8182430 | 8182594 | 8182430 | ID=Msa0393910-mRNA-1:exon:2106;Parent=Msa0393910-mRNA-1 |
| chr3_2 | exon | 8181710 | 8181789 | 8181710 | ID=Msa0393910-mRNA-1:exon:2105;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8186243 | 8186347 | 8186243 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8186004 | 8186123 | 8186004 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8185587 | 8185784 | 8185587 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8184713 | 8184868 | 8184713 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8184443 | 8184612 | 8184443 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8183450 | 8183599 | 8183450 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8182733 | 8183073 | 8182733 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8182430 | 8182594 | 8182430 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| chr3_2 | CDS | 8181710 | 8181789 | 8181710 | ID=Msa0393910-mRNA-1:cds;Parent=Msa0393910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
