AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0493870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493870 MtrunA17_Chr3g0088441 97.925 530 11 0 1 530 1 530 0.0 1080
Msa0493870 MtrunA17_Chr4g0033311 87.947 531 63 1 1 530 1 531 0.0 993
Msa0493870 MtrunA17_Chr4g0033321 72.534 517 138 2 5 521 4 516 0.0 810
Msa0493870 MtrunA17_Chr4g0033401 75.050 497 123 1 25 521 22 517 0.0 806
Msa0493870 MtrunA17_Chr4g0033331 74.899 494 123 1 25 518 27 519 0.0 805
Msa0493870 MtrunA17_Chr2g0329201 70.039 514 147 1 1 514 1 507 0.0 766
Msa0493870 MtrunA17_Chr2g0329191 69.216 510 155 2 6 514 1 509 0.0 753
Msa0493870 MtrunA17_Chr6g0482131 68.472 517 159 2 1 516 1 514 0.0 751
Msa0493870 MtrunA17_Chr6g0482071 67.829 516 163 2 1 515 1 514 0.0 733
Msa0493870 MtrunA17_Chr4g0033341 67.928 502 157 2 14 514 45 543 0.0 730
Msa0493870 MtrunA17_Chr4g0033201 65.430 512 174 1 3 514 4 512 0.0 727
Msa0493870 MtrunA17_Chr4g0033271 65.887 513 171 1 2 514 3 511 0.0 725
Msa0493870 MtrunA17_Chr4g0033191 66.129 496 168 0 22 517 27 522 0.0 723
Msa0493870 MtrunA17_Chr6g0482081 66.538 520 163 5 1 515 1 514 0.0 708
Msa0493870 MtrunA17_Chr2g0329321 64.591 514 156 1 1 514 1 488 0.0 699
Msa0493870 MtrunA17_Chr4g0033261 61.731 520 168 3 1 515 1 494 0.0 659
Msa0493870 MtrunA17_Chr4g0033231 61.122 499 162 3 23 515 22 494 0.0 639
Msa0493870 MtrunA17_Chr5g0430451 61.260 524 167 3 1 514 1 498 0.0 633
Msa0493870 MtrunA17_Chr4g0010501 58.551 497 200 3 18 514 4 494 0.0 608
Msa0493870 MtrunA17_Chr4g0006111 57.201 493 171 7 34 514 61 525 0.0 566
Msa0493870 MtrunA17_Chr3g0087261 54.510 510 223 6 6 514 8 509 0.0 554
Msa0493870 MtrunA17_Chr4g0006131 56.420 514 177 10 15 513 19 500 0.0 551
Msa0493870 MtrunA17_Chr3g0087271 53.229 511 233 4 4 514 6 510 0.0 545
Msa0493870 MtrunA17_Chr4g0043091 51.731 491 227 6 27 513 18 502 0.0 524
Msa0493870 MtrunA17_Chr4g0042171 50.205 488 237 4 32 516 18 502 2.61e-171 494
Msa0493870 MtrunA17_Chr6g0482941 48.228 508 255 6 8 515 14 513 8.99e-166 479
Msa0493870 MtrunA17_Chr2g0301231 57.518 419 141 6 106 514 1 392 4.76e-164 471
Msa0493870 MtrunA17_Chr6g0482951 47.082 514 261 6 2 515 11 513 3.64e-163 473
Msa0493870 MtrunA17_Chr3g0090111 46.901 484 233 7 38 516 19 483 2.76e-157 457
Msa0493870 MtrunA17_Chr3g0090131 46.778 481 239 7 35 513 18 483 1.14e-155 453
Msa0493870 MtrunA17_Chr4g0074561 45.547 494 251 6 43 526 40 525 9.61e-155 452
Msa0493870 MtrunA17_Chr2g0317841 46.347 479 246 6 38 512 32 503 3.06e-152 446
Msa0493870 MtrunA17_Chr2g0317821 46.973 479 243 6 38 512 32 503 6.27e-152 445
Msa0493870 MtrunA17_Chr2g0288071 45.019 522 266 7 6 524 49 552 2.34e-150 442
Msa0493870 MtrunA17_Chr4g0074551 46.316 475 249 5 43 515 55 525 1.96e-148 437
Msa0493870 MtrunA17_Chr2g0288021 44.835 484 261 5 37 518 34 513 8.23e-144 424
Msa0493870 MtrunA17_Chr7g0242691 44.813 482 248 7 37 515 30 496 2.11e-143 423
Msa0493870 MtrunA17_Chr7g0242681 45.041 484 237 9 38 513 38 500 8.29e-142 419
Msa0493870 MtrunA17_Chr4g0006971 43.496 492 260 7 37 525 26 502 1.04e-139 413
Msa0493870 MtrunA17_Chr5g0428831 44.082 490 245 10 32 513 21 489 3.14e-139 412
Msa0493870 MtrunA17_Chr3g0087201 57.958 333 135 2 182 514 17 344 5.59e-138 402
Msa0493870 MtrunA17_Chr1g0195611 42.300 513 259 9 8 513 6 488 2.73e-136 404
Msa0493870 MtrunA17_Chr7g0234111 43.933 478 248 6 39 515 76 534 8.39e-125 376
Msa0493870 MtrunA17_Chr7g0234091 42.946 482 251 7 39 517 76 536 1.23e-123 373
Msa0493870 MtrunA17_Chr5g0418871 55.518 299 130 2 57 355 2 297 7.58e-122 361
Msa0493870 MtrunA17_Chr7g0234131 42.083 480 249 7 39 512 76 532 1.61e-119 362
Msa0493870 MtrunA17_Chr1g0195641 47.059 391 186 8 40 424 29 404 6.48e-117 351
Msa0493870 MtrunA17_Chr7g0230651 45.777 367 183 5 93 459 26 376 2.15e-100 308
Msa0493870 MtrunA17_Chr3g0087191 69.388 147 45 0 35 181 19 165 1.54e-73 231
Msa0493870 MtrunA17_Chr7g0236731 47.009 234 117 2 127 359 28 255 1.71e-60 201
Msa0493870 MtrunA17_Chr7g0227561 40.074 272 124 5 40 308 48 283 1.13e-59 199
Msa0493870 MtrunA17_Chr4g0068871 26.392 413 223 14 102 504 183 524 4.15e-28 118
Msa0493870 MtrunA17_Chr5g0418861 48.889 90 45 1 424 512 1 90 3.27e-24 96.7
Msa0493870 MtrunA17_Chr8g0352881 39.669 121 63 1 249 359 32 152 5.18e-24 98.6
Msa0493870 MtrunA17_Chr8g0352881 48.571 70 35 1 47 116 7 75 1.23e-13 68.9
Msa0493870 MtrunA17_Chr2g0288031 50.847 59 28 1 189 247 3 60 2.33e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0493870 AT2G44480.1 57.143 490 207 2 25 512 20 508 0.0 593
Msa0493870 AT2G44480.3 57.862 477 200 1 36 512 64 539 0.0 593
Msa0493870 AT5G44640.1 55.078 512 218 4 7 517 6 506 0.0 584
Msa0493870 AT5G42260.1 56.461 503 207 4 7 508 6 497 0.0 583
Msa0493870 AT2G44450.1 57.322 478 199 2 38 515 31 503 0.0 577
Msa0493870 AT3G60130.1 56.184 477 203 3 38 513 30 501 0.0 558
Msa0493870 AT2G25630.1 55.042 476 191 4 38 512 30 483 0.0 540
Msa0493870 AT5G24550.1 52.642 492 220 6 38 521 32 518 0.0 534
Msa0493870 AT3G60140.1 48.549 517 250 5 1 514 1 504 0.0 528
Msa0493870 AT1G51470.1 52.588 483 215 7 34 514 41 511 0.0 526
Msa0493870 AT1G47600.1 51.553 483 220 7 34 514 41 511 6.06e-180 516
Msa0493870 AT1G47600.2 51.553 483 219 7 34 514 41 510 2.72e-179 514
Msa0493870 AT5G24540.1 50.096 519 244 7 9 519 5 516 3.50e-179 515
Msa0493870 AT3G60120.1 52.066 484 221 7 37 514 13 491 4.75e-178 512
Msa0493870 AT2G44470.3 49.583 480 238 4 38 514 29 507 8.22e-178 513
Msa0493870 AT2G44490.1 51.245 482 229 5 37 513 13 493 1.17e-177 512
Msa0493870 AT2G44480.2 56.757 407 175 1 106 512 1 406 4.28e-177 505
Msa0493870 AT1G26560.1 49.696 493 228 6 30 512 24 506 4.22e-175 504
Msa0493870 AT5G54570.1 50.936 481 227 4 37 512 29 505 6.28e-173 499
Msa0493870 AT2G44460.1 49.797 492 242 5 34 522 25 514 5.15e-172 498
Msa0493870 AT3G18080.1 50.617 486 232 6 33 517 34 512 7.32e-170 490
Msa0493870 AT5G25980.2 46.490 527 271 9 6 528 19 538 2.98e-167 485
Msa0493870 AT3G60130.2 55.238 420 182 3 95 513 35 449 5.70e-167 481
Msa0493870 AT3G18070.3 47.119 486 241 7 33 517 25 495 3.12e-160 465
Msa0493870 AT3G60130.3 54.048 420 176 4 95 513 35 438 1.92e-159 461
Msa0493870 AT3G18070.1 47.119 486 247 7 33 517 25 501 2.73e-159 463
Msa0493870 AT3G09260.1 46.488 484 252 6 38 517 35 515 1.24e-156 457
Msa0493870 AT3G21370.1 46.914 486 244 8 37 513 32 512 1.49e-156 457
Msa0493870 AT1G75940.1 47.444 489 245 8 38 517 37 522 1.63e-156 457
Msa0493870 AT5G36890.2 47.808 479 237 4 40 517 18 484 2.21e-156 455
Msa0493870 AT5G36890.1 47.808 479 237 4 40 517 18 484 2.52e-156 455
Msa0493870 AT3G03640.1 45.661 484 257 4 36 514 32 514 2.78e-156 456
Msa0493870 AT2G32860.1 44.948 485 263 4 37 518 93 576 1.48e-151 447
Msa0493870 AT2G44470.1 47.991 423 217 3 38 458 29 450 2.11e-151 441
Msa0493870 AT5G26000.1 45.087 519 262 11 7 512 3 511 7.82e-151 443
Msa0493870 AT5G54570.3 50.469 426 203 3 37 458 29 450 2.77e-150 438
Msa0493870 AT2G32860.2 44.835 484 263 4 37 516 93 576 3.28e-150 444
Msa0493870 AT1G52400.3 43.810 525 277 11 1 515 2 518 4.21e-150 441
Msa0493870 AT1G52400.1 43.810 525 277 11 1 515 2 518 4.21e-150 441
Msa0493870 AT5G24540.2 51.415 424 202 4 38 458 32 454 4.39e-150 438
Msa0493870 AT5G28510.1 45.436 493 257 7 29 512 30 519 6.50e-150 440
Msa0493870 AT1G66280.1 47.485 497 243 11 26 512 22 510 2.24e-149 439
Msa0493870 AT1G66270.1 45.759 507 262 9 24 523 21 521 4.30e-149 438
Msa0493870 AT3G60140.2 48.866 397 200 3 29 423 17 412 2.46e-146 428
Msa0493870 AT1G66270.2 45.365 507 262 10 24 523 21 519 1.57e-145 429
Msa0493870 AT1G02850.2 46.377 483 238 9 35 513 21 486 4.08e-145 427
Msa0493870 AT5G25980.3 46.491 456 235 7 6 459 19 467 1.52e-143 422
Msa0493870 AT5G25980.1 46.491 456 235 7 6 459 19 467 1.52e-143 422
Msa0493870 AT5G54570.2 50.243 412 196 4 106 512 1 408 3.32e-142 417
Msa0493870 AT1G61820.1 43.763 489 269 6 33 518 25 510 7.63e-142 419
Msa0493870 AT1G61810.1 44.864 477 257 5 43 516 38 511 9.99e-142 419
Msa0493870 AT4G27830.1 44.306 483 248 7 34 512 19 484 2.58e-141 417
Msa0493870 AT2G44450.2 54.902 357 156 2 159 515 1 352 3.90e-141 411
Msa0493870 AT4G21760.2 42.278 518 286 7 3 518 21 527 9.66e-141 417
Msa0493870 AT1G02850.5 44.466 506 237 10 35 513 21 509 1.69e-140 416
Msa0493870 AT1G02850.4 44.773 507 235 11 35 513 21 510 2.30e-139 413
Msa0493870 AT2G44480.4 60.317 315 122 2 25 337 51 364 1.84e-138 406
Msa0493870 AT1G60090.2 43.004 486 253 8 38 519 24 489 1.23e-136 405
Msa0493870 AT1G61810.3 44.946 465 248 5 43 501 38 500 1.26e-136 407
Msa0493870 AT4G21760.1 41.860 516 281 8 3 518 21 517 1.39e-134 401
Msa0493870 AT1G02850.1 44.928 483 218 10 35 513 21 459 3.71e-134 398
Msa0493870 AT4G27820.1 44.792 480 242 7 37 512 22 482 5.41e-134 399
Msa0493870 AT4G22100.1 42.769 484 255 9 40 519 24 489 1.32e-132 395
Msa0493870 AT1G60090.1 41.429 490 262 9 38 519 24 496 1.40e-132 395
Msa0493870 AT5G26000.2 44.828 464 235 9 7 459 3 456 3.16e-132 392
Msa0493870 AT3G62750.1 42.324 482 246 8 35 512 20 473 4.82e-131 390
Msa0493870 AT3G62750.2 41.393 517 268 10 3 512 11 499 9.10e-131 391
Msa0493870 AT2G44470.2 50.448 335 164 2 38 371 29 362 4.79e-129 382
Msa0493870 AT1G45191.4 41.935 496 258 10 39 530 30 499 9.30e-128 382
Msa0493870 AT1G52400.2 43.683 467 246 10 1 458 2 460 2.21e-127 380
Msa0493870 AT1G45191.2 41.532 496 266 10 39 530 30 505 4.43e-126 379
Msa0493870 AT1G45191.6 41.247 497 271 9 39 530 30 510 4.07e-125 376
Msa0493870 AT1G45191.1 40.828 507 271 10 39 530 30 522 1.11e-122 370
Msa0493870 AT3G62740.1 39.834 482 263 9 35 512 20 478 6.04e-122 367
Msa0493870 AT1G02850.3 46.135 414 188 7 35 423 21 424 2.94e-120 361
Msa0493870 AT1G61810.5 44.526 411 222 5 109 516 4 411 5.03e-117 352
Msa0493870 AT2G44460.2 50.136 369 180 4 157 522 1 368 1.19e-116 352
Msa0493870 AT5G48375.1 42.404 441 186 6 38 477 38 411 5.49e-115 347
Msa0493870 AT1G51490.1 50.143 349 157 7 45 390 27 361 4.38e-114 344
Msa0493870 AT3G62750.4 40.860 465 241 9 3 461 11 447 1.48e-113 345
Msa0493870 AT2G44480.5 52.685 298 140 1 215 512 6 302 1.95e-112 336
Msa0493870 AT1G61810.4 44.792 384 207 4 43 423 38 419 2.91e-112 340
Msa0493870 AT4G27830.2 42.822 411 216 6 106 512 1 396 9.98e-111 336
Msa0493870 AT3G18070.4 48.923 325 160 4 33 357 25 343 2.42e-109 331
Msa0493870 AT3G62750.7 45.748 341 165 5 35 371 20 344 2.07e-106 323
Msa0493870 AT3G62750.8 45.748 341 165 5 35 371 20 344 2.07e-106 323
Msa0493870 AT3G62740.2 40.047 427 230 8 35 458 20 423 2.19e-106 325
Msa0493870 AT3G62750.3 45.455 341 166 4 35 371 46 370 1.78e-105 323
Msa0493870 AT1G45191.5 47.649 319 159 3 39 357 30 340 2.00e-105 322
Msa0493870 AT1G45191.3 47.649 319 159 3 39 357 30 340 2.10e-105 322
Msa0493870 AT1G60270.1 45.821 347 177 5 38 381 24 362 2.40e-105 321
Msa0493870 AT4G27820.2 42.822 411 217 6 106 512 1 397 2.34e-103 317
Msa0493870 AT4G27820.3 42.822 411 217 6 106 512 1 397 2.34e-103 317
Msa0493870 AT3G18070.2 46.667 330 171 4 189 517 99 424 1.73e-102 315
Msa0493870 AT3G18070.2 48.529 68 34 1 33 100 25 91 2.79e-14 75.5
Msa0493870 AT1G61820.3 43.243 370 205 5 152 518 4 371 5.37e-102 312
Msa0493870 AT3G62750.6 39.903 411 220 7 106 512 1 388 9.05e-99 305
Msa0493870 AT3G62750.5 39.903 411 220 7 106 512 1 388 9.05e-99 305
Msa0493870 AT3G18070.7 46.203 316 165 4 203 517 1 312 1.01e-96 296
Msa0493870 AT1G61810.2 51.321 265 127 2 43 307 38 300 4.67e-92 284
Msa0493870 AT1G60270.2 45.487 277 144 4 108 381 3 275 5.61e-78 247
Msa0493870 AT3G18070.5 45.992 237 126 2 190 425 100 335 1.76e-68 224
Msa0493870 AT3G18070.5 48.529 68 34 1 33 100 25 91 1.64e-14 75.5
Msa0493870 AT3G18070.6 45.089 224 121 2 203 425 1 223 4.50e-63 206
Msa0493870 AT5G16580.1 36.424 302 159 8 178 469 21 299 7.39e-51 176
Msa0493870 AT3G06510.2 27.865 445 230 18 101 513 159 544 8.41e-29 121
Msa0493870 AT3G06510.1 26.995 426 224 15 101 513 159 510 2.70e-28 119

Find 108 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATTGATTTCAGGTTTA+TGG 0.071595 3_4:+20514737 Msa0493870:intron
CTATGCAGAACTTTGCTTTA+AGG 0.085798 3_4:+20514003 Msa0493870:CDS
TATATATACCTGGATATTTA+TGG 0.130865 3_4:-20513030 None:intergenic
CAGCTCTTTCAGCAGCTTTC+TGG 0.133720 3_4:-20514481 None:intergenic
GAACTTTGCTTTAAGGAATT+TGG 0.144947 3_4:+20514010 Msa0493870:CDS
TTCCCTAAAGGATTTATATT+TGG 0.182303 3_4:+20512758 Msa0493870:CDS
TAATTTCATCAACGAGTTAT+TGG 0.184666 3_4:+20513689 Msa0493870:CDS
TTGATTTACATCACTGAAAA+TGG 0.211288 3_4:+20515276 Msa0493870:CDS
TAGCTACTTGACAGATTCTT+TGG 0.267402 3_4:+20514935 Msa0493870:CDS
GAATCACCACCGGTGCAATT+TGG 0.269114 3_4:-20514139 None:intergenic
GCTCCAAATATAAATCCTTT+AGG 0.278985 3_4:-20512761 None:intergenic
AGCAGCTTTCTGGTCAGATT+TGG 0.291109 3_4:-20514471 None:intergenic
GAAACTCAAAAGGGTGTAAT+AGG 0.295734 3_4:+20514407 Msa0493870:CDS
TGGGAAACCTATTGGTATTA+AGG 0.303617 3_4:+20515085 Msa0493870:CDS
CTCCAAATATAAATCCTTTA+GGG 0.310613 3_4:-20512760 None:intergenic
CCATGGAGTTACAGTCAAAA+TGG 0.331262 3_4:+20514067 Msa0493870:CDS
TTGGTGATAGAGTGAAATAT+TGG 0.342182 3_4:+20514029 Msa0493870:CDS
GTGGTAGAACACCAAGTATA+TGG 0.346943 3_4:+20512996 Msa0493870:CDS
TTTATTTATGATTAGTTTGA+AGG 0.349443 3_4:+20512959 Msa0493870:intron
CACCCGGTCGTTGTTCTAGT+TGG 0.362390 3_4:+20514110 Msa0493870:CDS
ATATATACCTGGATATTTAT+GGG 0.366623 3_4:-20513029 None:intergenic
GCACAAGTGCAAAAGCAATT+AGG 0.372097 3_4:-20512655 None:intergenic
TGGTAGTGTGTGACTATATA+GGG 0.376295 3_4:-20514172 None:intergenic
ATCAACGAGTTATTGGCTAA+TGG 0.391833 3_4:+20513696 Msa0493870:CDS
TCGGGTTATTCCGTGAGATT+TGG 0.395849 3_4:+20515689 Msa0493870:CDS
CTTTGTCTTGTACACATTGA+CGG 0.398620 3_4:-20514215 None:intergenic
CTTGTACACATTGACGGCTT+CGG 0.403989 3_4:-20514209 None:intergenic
AAGTGTCCATGAGCGATTCT+TGG 0.413109 3_4:-20515458 None:intergenic
TTGGTAGTGTGTGACTATAT+AGG 0.416966 3_4:-20514173 None:intergenic
ACATTTGTGGATTACAAGAA+TGG 0.418146 3_4:+20515716 Msa0493870:CDS
TAATTCCAGTTGAGCGAAAT+GGG 0.419967 3_4:+20515066 Msa0493870:intron
GATAATATAGATGACGATAA+TGG 0.420645 3_4:-20515494 None:intergenic
GTATAACCTTGGTAGCTAAC+TGG 0.426224 3_4:+20514429 Msa0493870:CDS
AGCAAAGTTCTGCATAGTCT+TGG 0.429056 3_4:-20513997 None:intergenic
TGGTGATAGAGTGAAATATT+GGG 0.433375 3_4:+20514030 Msa0493870:CDS
TTAATTCCAGTTGAGCGAAA+TGG 0.437258 3_4:+20515065 Msa0493870:intron
AGTAGAAACAGTTTCCCTAA+AGG 0.450974 3_4:+20512746 Msa0493870:CDS
ACATGTGCAGGAAACTCAAA+AGG 0.455499 3_4:+20514397 Msa0493870:intron
GAGCGAAATGGGAAACCTAT+TGG 0.456595 3_4:+20515077 Msa0493870:CDS
TTATGCAGATTGCTTCTGAT+TGG 0.460654 3_4:+20515187 Msa0493870:intron
TTTCAGTGATGTAAATCAAC+GGG 0.461224 3_4:-20515272 None:intergenic
AGTCAAAATGGCTATGCAAA+TGG 0.462239 3_4:+20514079 Msa0493870:CDS
TTTATGGATCCACTGACAAC+AGG 0.462467 3_4:+20514753 Msa0493870:CDS
AAAGGATTTATATTTGGAGC+AGG 0.463085 3_4:+20512764 Msa0493870:CDS
GGTCTAGCATTGCTTAGAAA+TGG 0.463232 3_4:-20514912 None:intergenic
TGACGTACCTTAATACCAAT+AGG 0.465150 3_4:-20515092 None:intergenic
CAAGCTTTAGAAGATGAGTA+TGG 0.466616 3_4:+20513851 Msa0493870:CDS
TGTGTACAAGACAAAGTATC+AGG 0.470745 3_4:+20514222 Msa0493870:CDS
CATACAGATTCTCCTTATCC+TGG 0.474985 3_4:+20513501 Msa0493870:CDS
AAAAGCATGAGATCCCTTGT+TGG 0.489756 3_4:+20514786 Msa0493870:CDS
AAACAATCTAAGCTACTCAT+TGG 0.490000 3_4:+20514834 Msa0493870:CDS
GAGATTTGGAATGACATTTG+TGG 0.496815 3_4:+20515703 Msa0493870:CDS
GGATAATCTCCTGTTGTCAG+TGG 0.497044 3_4:-20514762 None:intergenic
TTTGAAGGTGCAGCAAATGA+AGG 0.505148 3_4:+20512974 Msa0493870:CDS
TACTCATCTTCTAAAGCTTG+TGG 0.509391 3_4:-20513848 None:intergenic
ATAATAGAAGGAAAGCTTAG+TGG 0.509606 3_4:+20513633 Msa0493870:intron
ACGTCCAAGGATATTACATA+TGG 0.509867 3_4:+20515639 Msa0493870:CDS
CAAAAGCAATTAGGCAGAGA+AGG 0.515479 3_4:-20512646 None:intergenic
ACTCATCTTCTAAAGCTTGT+GGG 0.518122 3_4:-20513847 None:intergenic
ATTTGGAATCTGAGAGTGGC+AGG 0.519932 3_4:-20514454 None:intergenic
AATCATCAAGGATATGAACT+TGG 0.522377 3_4:+20513475 Msa0493870:CDS
TGGTAGAACACCAAGTATAT+GGG 0.523979 3_4:+20512997 Msa0493870:CDS
AGGACCATATGTAATATCCT+TGG 0.529150 3_4:-20515643 None:intergenic
CTTCGGCATGAGCTAGAAGT+TGG 0.529575 3_4:-20514192 None:intergenic
GTAATTAATTACCTGGTATG+AGG 0.533192 3_4:-20512792 None:intergenic
CAATATTCTAGACCAGGATA+AGG 0.535004 3_4:-20513513 None:intergenic
AGAGCTGTTGACTTCATGTA+TGG 0.539504 3_4:+20514497 Msa0493870:CDS
AGCAGGATCCTCCTCATACC+AGG 0.541413 3_4:+20512781 Msa0493870:CDS
AAAGAATCTGTCAAGTAGCT+AGG 0.542781 3_4:-20514933 None:intergenic
CAACCAACTAGAACAACGAC+CGG 0.542788 3_4:-20514113 None:intergenic
ACTTTCACCCATAAATATCC+AGG 0.543624 3_4:+20513022 Msa0493870:CDS
TTGGTAATCTTGCTCCAACA+AGG 0.556284 3_4:-20514800 None:intergenic
TGGTAATCTTGCTCCAACAA+GGG 0.565723 3_4:-20514799 None:intergenic
GTAGTTGTGATATGAATCAA+TGG 0.572496 3_4:-20513194 None:intergenic
GGAAGATGTTAGAATCATCA+AGG 0.575017 3_4:+20513463 Msa0493870:intron
ATCGGTCCAAGAATCGCTCA+TGG 0.576413 3_4:+20515452 Msa0493870:CDS
AATGAAGCAACATCAAGAAG+TGG 0.577727 3_4:-20512722 None:intergenic
GTGAAAGTATCCCATATACT+TGG 0.583793 3_4:-20513007 None:intergenic
TTGGAAACTCACACTATGAG+AGG 0.585684 3_4:-20513887 None:intergenic
GTACAGTGATCCTACACTAT+CGG 0.588636 3_4:+20515434 Msa0493870:CDS
TGGCTATGCAAATGGACGAA+TGG 0.589653 3_4:+20514087 Msa0493870:CDS
GCTTAGAAATGGTGCATCTG+AGG 0.591574 3_4:-20514901 None:intergenic
CTCAATCGCAGAATCACCAC+CGG 0.592772 3_4:-20514149 None:intergenic
TGGTTGAATCCAAATTGCAC+CGG 0.596108 3_4:+20514130 Msa0493870:CDS
AAATGTCATTCCAAATCTCA+CGG 0.598464 3_4:-20515699 None:intergenic
GCAAATGGACGAATGGCACC+CGG 0.605468 3_4:+20514094 Msa0493870:CDS
ACGAGAAACTTTCTGCGCTG+TGG 0.609827 3_4:+20515750 Msa0493870:CDS
AGTGGTGGCATAAATCAAGA+AGG 0.614322 3_4:+20513651 Msa0493870:CDS
CAGGTACCAGTTAGCTACCA+AGG 0.618729 3_4:-20514435 None:intergenic
ACTTGGCAATATTCTAGACC+AGG 0.618905 3_4:-20513519 None:intergenic
AGAAGATCACGAATTCCTCT+CGG 0.618923 3_4:-20515222 None:intergenic
GGGTTACTTTGAATGAACCA+TGG 0.621045 3_4:+20514050 Msa0493870:CDS
GCTTTAGAAGATGAGTATGG+TGG 0.623267 3_4:+20513854 Msa0493870:CDS
AGGCAAGGTGCAAACGTCCA+AGG 0.624303 3_4:+20515626 Msa0493870:intron
CTGTTGACTTCATGTATGGA+TGG 0.624776 3_4:+20514501 Msa0493870:CDS
CCATTCAAAATTGTCGAACA+AGG 0.625604 3_4:-20515663 None:intergenic
TGGTTGTATGTTTATCCGAG+AGG 0.627108 3_4:+20515207 Msa0493870:CDS
CATGTGCAGGAAACTCAAAA+GGG 0.627665 3_4:+20514398 Msa0493870:intron
ATTAATTACCTGGTATGAGG+AGG 0.627712 3_4:-20512789 None:intergenic
GGGTGTAATAGGTATAACCT+TGG 0.642396 3_4:+20514418 Msa0493870:CDS
TGATCTTCTGTTATACACCA+AGG 0.647502 3_4:+20515236 Msa0493870:CDS
ATAGAAGGAAAGCTTAGTGG+TGG 0.648918 3_4:+20513636 Msa0493870:intron
AACCAACTAGAACAACGACC+GGG 0.650505 3_4:-20514112 None:intergenic
TGATTCATATCACAACTACA+AGG 0.653125 3_4:+20513198 Msa0493870:CDS
GATTCTTGGACCGATAGTGT+AGG 0.670328 3_4:-20515444 None:intergenic
TTGAATCCAAATTGCACCGG+TGG 0.672179 3_4:+20514133 Msa0493870:CDS
GAAGGTGCAGCAAATGAAGG+TGG 0.681013 3_4:+20512977 Msa0493870:CDS
TCAGATTTGGAATCTGAGAG+TGG 0.682392 3_4:-20514458 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTATATATATACC+TGG - chr3_4:20513043-20513062 None:intergenic 10.0%
!!! AATAAATTGTCAATAATTTT+AGG + chr3_4:20513788-20513807 Msa0493870:intron 10.0%
!! TTTACAAAAAGATAAAAATA+TGG + chr3_4:20514601-20514620 Msa0493870:intron 10.0%
!!! TTTATTTATGATTAGTTTGA+AGG + chr3_4:20512959-20512978 Msa0493870:intron 15.0%
!!! TTGTTGTTCATATATATTAT+AGG + chr3_4:20513442-20513461 Msa0493870:intron 15.0%
!! TTATCAATATTAAACTTACT+TGG - chr3_4:20513539-20513558 None:intergenic 15.0%
!! TTCTATTTAAAGACATTAAA+CGG + chr3_4:20514347-20514366 Msa0493870:intron 15.0%
!!! TAAAAATATGGATTAACATT+AGG + chr3_4:20514613-20514632 Msa0493870:intron 15.0%
!!! AAAAATATGGATTAACATTA+GGG + chr3_4:20514614-20514633 Msa0493870:intron 15.0%
!! ACTAAATATGATATATAGTT+AGG - chr3_4:20515310-20515329 None:intergenic 15.0%
!! AATTAGAGTAATTAATTACC+TGG - chr3_4:20512802-20512821 None:intergenic 20.0%
!! ATATATACCTGGATATTTAT+GGG - chr3_4:20513032-20513051 None:intergenic 20.0%
!! TATATATACCTGGATATTTA+TGG - chr3_4:20513033-20513052 None:intergenic 20.0%
!!! GTAATATTGATTTTGTGTTT+AGG + chr3_4:20513398-20513417 Msa0493870:intron 20.0%
!! AACTATTTATCCATAATAGA+AGG + chr3_4:20513621-20513640 Msa0493870:intron 20.0%
!! ATCATCAAGAACAAAATATA+AGG - chr3_4:20513765-20513784 None:intergenic 20.0%
!!! AATTTTAGGTATAAAACCAT+TGG + chr3_4:20513802-20513821 Msa0493870:intron 20.0%
!!! AACATTAAGCTATATTGTTT+TGG - chr3_4:20513909-20513928 None:intergenic 20.0%
!! AATAAATCAAAAAGAGTGAT+GGG - chr3_4:20514541-20514560 None:intergenic 20.0%
!! AAATAAATCAAAAAGAGTGA+TGG - chr3_4:20514542-20514561 None:intergenic 20.0%
!! AATACATATGCAAAATATCT+TGG + chr3_4:20514572-20514591 Msa0493870:intron 20.0%
!! TAAGGTTTATAAACATTTCT+AGG + chr3_4:20514657-20514676 Msa0493870:intron 20.0%
!!! GTCATATATTTTTTGTGATA+TGG + chr3_4:20514679-20514698 Msa0493870:intron 20.0%
!!! ATTGGTTCATTTGATTTTAT+TGG + chr3_4:20514852-20514871 Msa0493870:CDS 20.0%
!! CAAACATATTTAAAGGAAAA+TGG - chr3_4:20515604-20515623 None:intergenic 20.0%
! TTCCCTAAAGGATTTATATT+TGG + chr3_4:20512758-20512777 Msa0493870:CDS 25.0%
! CTCCAAATATAAATCCTTTA+GGG - chr3_4:20512763-20512782 None:intergenic 25.0%
! TGCATTACACTTATATCTAA+GGG + chr3_4:20513318-20513337 Msa0493870:intron 25.0%
! TAATTTCATCAACGAGTTAT+TGG + chr3_4:20513689-20513708 Msa0493870:CDS 25.0%
!!! TGGAAATCTTTTCTGAAAAA+TGG - chr3_4:20513980-20513999 None:intergenic 25.0%
! AAAAGTCTAACAATTGTTTG+AGG - chr3_4:20514274-20514293 None:intergenic 25.0%
! AGTAAATGATTTATCGACAA+CGG + chr3_4:20514313-20514332 Msa0493870:intron 25.0%
! TTAAAGACATTAAACGGTAA+CGG + chr3_4:20514353-20514372 Msa0493870:intron 25.0%
! AATATTTATGTTACATGTGC+AGG + chr3_4:20514385-20514404 Msa0493870:intron 25.0%
!!! TTGTTATCATTGGTTTTCTA+AGG + chr3_4:20514639-20514658 Msa0493870:intron 25.0%
! GATATGGTTAAATGAATTTG+TGG + chr3_4:20514695-20514714 Msa0493870:intron 25.0%
!! ATCAAAAGTTGATTGATTTC+AGG + chr3_4:20514730-20514749 Msa0493870:intron 25.0%
!!! GATTGTTTTGCATTGAATTT+TGG - chr3_4:20514822-20514841 None:intergenic 25.0%
!! TTGCATATCTTTTCTATTTG+TGG + chr3_4:20515042-20515061 Msa0493870:intron 25.0%
!! TTTTCAGTGATGTAAATCAA+CGG - chr3_4:20515276-20515295 None:intergenic 25.0%
! TTGATTTACATCACTGAAAA+TGG + chr3_4:20515276-20515295 Msa0493870:CDS 25.0%
! GATAATATAGATGACGATAA+TGG - chr3_4:20515497-20515516 None:intergenic 25.0%
!! TAGTCTTTTACATCTCTAAA+AGG + chr3_4:20515538-20515557 Msa0493870:intron 25.0%
! TAGAACATCGTTAAATTGAT+TGG - chr3_4:20515579-20515598 None:intergenic 25.0%
! TTCCTTTAAATATGTTTGAC+AGG + chr3_4:20515606-20515625 Msa0493870:intron 25.0%
GCTCCAAATATAAATCCTTT+AGG - chr3_4:20512764-20512783 None:intergenic 30.0%
! AAAGGATTTATATTTGGAGC+AGG + chr3_4:20512764-20512783 Msa0493870:CDS 30.0%
GTAATTAATTACCTGGTATG+AGG - chr3_4:20512795-20512814 None:intergenic 30.0%
GTAGTTGTGATATGAATCAA+TGG - chr3_4:20513197-20513216 None:intergenic 30.0%
TGATTCATATCACAACTACA+AGG + chr3_4:20513198-20513217 Msa0493870:CDS 30.0%
GTGCATTACACTTATATCTA+AGG + chr3_4:20513317-20513336 Msa0493870:intron 30.0%
AATCATCAAGGATATGAACT+TGG + chr3_4:20513475-20513494 Msa0493870:CDS 30.0%
ACTAAGCTTTCCTTCTATTA+TGG - chr3_4:20513634-20513653 None:intergenic 30.0%
ATAATAGAAGGAAAGCTTAG+TGG + chr3_4:20513633-20513652 Msa0493870:intron 30.0%
!! ATTGGTGACTCTTTTTCATT+GGG + chr3_4:20513820-20513839 Msa0493870:CDS 30.0%
!! GAACTTTGCTTTAAGGAATT+TGG + chr3_4:20514010-20514029 Msa0493870:CDS 30.0%
! TTGGTGATAGAGTGAAATAT+TGG + chr3_4:20514029-20514048 Msa0493870:CDS 30.0%
TGGTGATAGAGTGAAATATT+GGG + chr3_4:20514030-20514049 Msa0493870:CDS 30.0%
TTACTCATCGATGCTTTATA+TGG - chr3_4:20514298-20514317 None:intergenic 30.0%
TATGCAAAATATCTTGGATG+TGG + chr3_4:20514578-20514597 Msa0493870:intron 30.0%
!!! CATTAGGGTTTTGTTATCAT+TGG + chr3_4:20514629-20514648 Msa0493870:intron 30.0%
!! GTTGATTGATTTCAGGTTTA+TGG + chr3_4:20514737-20514756 Msa0493870:intron 30.0%
AAACAATCTAAGCTACTCAT+TGG + chr3_4:20514834-20514853 Msa0493870:CDS 30.0%
! GAAATTAGTTTCTTACATGC+TGG - chr3_4:20514966-20514985 None:intergenic 30.0%
TAGTAAGAGAACTCATAGAA+TGG - chr3_4:20514991-20515010 None:intergenic 30.0%
TTTCAGTGATGTAAATCAAC+GGG - chr3_4:20515275-20515294 None:intergenic 30.0%
GACGTGCATAATTTACTTAT+AGG + chr3_4:20515402-20515421 Msa0493870:intron 30.0%
TGCCTGTCAAACATATTTAA+AGG - chr3_4:20515611-20515630 None:intergenic 30.0%
TTAAATATGTTTGACAGGCA+AGG + chr3_4:20515611-20515630 Msa0493870:intron 30.0%
AAATGTCATTCCAAATCTCA+CGG - chr3_4:20515702-20515721 None:intergenic 30.0%
! ACATTTGTGGATTACAAGAA+TGG + chr3_4:20515716-20515735 Msa0493870:CDS 30.0%
AATGAAGCAACATCAAGAAG+TGG - chr3_4:20512725-20512744 None:intergenic 35.0%
AGTAGAAACAGTTTCCCTAA+AGG + chr3_4:20512746-20512765 Msa0493870:CDS 35.0%
ATTAATTACCTGGTATGAGG+AGG - chr3_4:20512792-20512811 None:intergenic 35.0%
TGGTAGAACACCAAGTATAT+GGG + chr3_4:20512997-20513016 Msa0493870:CDS 35.0%
!! GTGAAAGTATCCCATATACT+TGG - chr3_4:20513010-20513029 None:intergenic 35.0%
ACTTTCACCCATAAATATCC+AGG + chr3_4:20513022-20513041 Msa0493870:CDS 35.0%
GGAAGATGTTAGAATCATCA+AGG + chr3_4:20513463-20513482 Msa0493870:intron 35.0%
CAATATTCTAGACCAGGATA+AGG - chr3_4:20513516-20513535 None:intergenic 35.0%
! ATCAACGAGTTATTGGCTAA+TGG + chr3_4:20513696-20513715 Msa0493870:CDS 35.0%
CAATGAAAAAGAGTCACCAA+TGG - chr3_4:20513821-20513840 None:intergenic 35.0%
!! CATTGGTGACTCTTTTTCAT+TGG + chr3_4:20513819-20513838 Msa0493870:CDS 35.0%
!! ACTCATCTTCTAAAGCTTGT+GGG - chr3_4:20513850-20513869 None:intergenic 35.0%
!! TACTCATCTTCTAAAGCTTG+TGG - chr3_4:20513851-20513870 None:intergenic 35.0%
!! CAAGCTTTAGAAGATGAGTA+TGG + chr3_4:20513851-20513870 Msa0493870:CDS 35.0%
CTATGCAGAACTTTGCTTTA+AGG + chr3_4:20514003-20514022 Msa0493870:CDS 35.0%
AGTCAAAATGGCTATGCAAA+TGG + chr3_4:20514079-20514098 Msa0493870:CDS 35.0%
! TGGTAGTGTGTGACTATATA+GGG - chr3_4:20514175-20514194 None:intergenic 35.0%
!! TTGGTAGTGTGTGACTATAT+AGG - chr3_4:20514176-20514195 None:intergenic 35.0%
CTTTGTCTTGTACACATTGA+CGG - chr3_4:20514218-20514237 None:intergenic 35.0%
! TGTGTACAAGACAAAGTATC+AGG + chr3_4:20514222-20514241 Msa0493870:CDS 35.0%
! GAAACTCAAAAGGGTGTAAT+AGG + chr3_4:20514407-20514426 Msa0493870:CDS 35.0%
AAAGAATCTGTCAAGTAGCT+AGG - chr3_4:20514936-20514955 None:intergenic 35.0%
TAGCTACTTGACAGATTCTT+TGG + chr3_4:20514935-20514954 Msa0493870:CDS 35.0%
TTAATTCCAGTTGAGCGAAA+TGG + chr3_4:20515065-20515084 Msa0493870:intron 35.0%
TAATTCCAGTTGAGCGAAAT+GGG + chr3_4:20515066-20515085 Msa0493870:intron 35.0%
TGGGAAACCTATTGGTATTA+AGG + chr3_4:20515085-20515104 Msa0493870:CDS 35.0%
TGACGTACCTTAATACCAAT+AGG - chr3_4:20515095-20515114 None:intergenic 35.0%
CAGCAAAATCGTTAGAAGAA+AGG - chr3_4:20515124-20515143 None:intergenic 35.0%
! CTTTCTTCTAACGATTTTGC+TGG + chr3_4:20515122-20515141 Msa0493870:intron 35.0%
TTATGCAGATTGCTTCTGAT+TGG + chr3_4:20515187-20515206 Msa0493870:intron 35.0%
TGATCTTCTGTTATACACCA+AGG + chr3_4:20515236-20515255 Msa0493870:CDS 35.0%
ACGTCCAAGGATATTACATA+TGG + chr3_4:20515639-20515658 Msa0493870:CDS 35.0%
AGGACCATATGTAATATCCT+TGG - chr3_4:20515646-20515665 None:intergenic 35.0%
CCATTCAAAATTGTCGAACA+AGG - chr3_4:20515666-20515685 None:intergenic 35.0%
! CCTTGTTCGACAATTTTGAA+TGG + chr3_4:20515663-20515682 Msa0493870:CDS 35.0%
! GAGATTTGGAATGACATTTG+TGG + chr3_4:20515703-20515722 Msa0493870:CDS 35.0%
CAAAAGCAATTAGGCAGAGA+AGG - chr3_4:20512649-20512668 None:intergenic 40.0%
GCACAAGTGCAAAAGCAATT+AGG - chr3_4:20512658-20512677 None:intergenic 40.0%
! TTTGAAGGTGCAGCAAATGA+AGG + chr3_4:20512974-20512993 Msa0493870:CDS 40.0%
GTGGTAGAACACCAAGTATA+TGG + chr3_4:20512996-20513015 Msa0493870:CDS 40.0%
CATACAGATTCTCCTTATCC+TGG + chr3_4:20513501-20513520 Msa0493870:CDS 40.0%
ACTTGGCAATATTCTAGACC+AGG - chr3_4:20513522-20513541 None:intergenic 40.0%
ATAGAAGGAAAGCTTAGTGG+TGG + chr3_4:20513636-20513655 Msa0493870:intron 40.0%
AGTGGTGGCATAAATCAAGA+AGG + chr3_4:20513651-20513670 Msa0493870:CDS 40.0%
!! GCTTTAGAAGATGAGTATGG+TGG + chr3_4:20513854-20513873 Msa0493870:CDS 40.0%
TTGGAAACTCACACTATGAG+AGG - chr3_4:20513890-20513909 None:intergenic 40.0%
AGCAAAGTTCTGCATAGTCT+TGG - chr3_4:20514000-20514019 None:intergenic 40.0%
! GGGTTACTTTGAATGAACCA+TGG + chr3_4:20514050-20514069 Msa0493870:CDS 40.0%
!!! CCATTTTGACTGTAACTCCA+TGG - chr3_4:20514070-20514089 None:intergenic 40.0%
CCATGGAGTTACAGTCAAAA+TGG + chr3_4:20514067-20514086 Msa0493870:CDS 40.0%
TGGTTGAATCCAAATTGCAC+CGG + chr3_4:20514130-20514149 Msa0493870:CDS 40.0%
ACATGTGCAGGAAACTCAAA+AGG + chr3_4:20514397-20514416 Msa0493870:intron 40.0%
CATGTGCAGGAAACTCAAAA+GGG + chr3_4:20514398-20514417 Msa0493870:intron 40.0%
GGGTGTAATAGGTATAACCT+TGG + chr3_4:20514418-20514437 Msa0493870:CDS 40.0%
! GTATAACCTTGGTAGCTAAC+TGG + chr3_4:20514429-20514448 Msa0493870:CDS 40.0%
! TCAGATTTGGAATCTGAGAG+TGG - chr3_4:20514461-20514480 None:intergenic 40.0%
!! AGAGCTGTTGACTTCATGTA+TGG + chr3_4:20514497-20514516 Msa0493870:CDS 40.0%
!! CTGTTGACTTCATGTATGGA+TGG + chr3_4:20514501-20514520 Msa0493870:CDS 40.0%
TTTATGGATCCACTGACAAC+AGG + chr3_4:20514753-20514772 Msa0493870:CDS 40.0%
! ACAAGGGATCTCATGCTTTT+TGG - chr3_4:20514786-20514805 None:intergenic 40.0%
! AAAAGCATGAGATCCCTTGT+TGG + chr3_4:20514786-20514805 Msa0493870:CDS 40.0%
TGGTAATCTTGCTCCAACAA+GGG - chr3_4:20514802-20514821 None:intergenic 40.0%
! TTGGTAATCTTGCTCCAACA+AGG - chr3_4:20514803-20514822 None:intergenic 40.0%
GGTCTAGCATTGCTTAGAAA+TGG - chr3_4:20514915-20514934 None:intergenic 40.0%
TGGTTGTATGTTTATCCGAG+AGG + chr3_4:20515207-20515226 Msa0493870:CDS 40.0%
AGAAGATCACGAATTCCTCT+CGG - chr3_4:20515225-20515244 None:intergenic 40.0%
! CGGGTTATTGTACTTTTCCT+TGG - chr3_4:20515256-20515275 None:intergenic 40.0%
GTACAGTGATCCTACACTAT+CGG + chr3_4:20515434-20515453 Msa0493870:CDS 40.0%
! CGACAATTTTGAATGGTGCT+CGG + chr3_4:20515670-20515689 Msa0493870:CDS 40.0%
! GACAATTTTGAATGGTGCTC+GGG + chr3_4:20515671-20515690 Msa0493870:CDS 40.0%
TGGCTATGCAAATGGACGAA+TGG + chr3_4:20514087-20514106 Msa0493870:CDS 45.0%
AACCAACTAGAACAACGACC+GGG - chr3_4:20514115-20514134 None:intergenic 45.0%
CAACCAACTAGAACAACGAC+CGG - chr3_4:20514116-20514135 None:intergenic 45.0%
TTGAATCCAAATTGCACCGG+TGG + chr3_4:20514133-20514152 Msa0493870:CDS 45.0%
CTTGTACACATTGACGGCTT+CGG - chr3_4:20514212-20514231 None:intergenic 45.0%
! ATTTGGAATCTGAGAGTGGC+AGG - chr3_4:20514457-20514476 None:intergenic 45.0%
! AGCAGCTTTCTGGTCAGATT+TGG - chr3_4:20514474-20514493 None:intergenic 45.0%
GGATAATCTCCTGTTGTCAG+TGG - chr3_4:20514765-20514784 None:intergenic 45.0%
GCTTAGAAATGGTGCATCTG+AGG - chr3_4:20514904-20514923 None:intergenic 45.0%
GAGCGAAATGGGAAACCTAT+TGG + chr3_4:20515077-20515096 Msa0493870:CDS 45.0%
GATTCTTGGACCGATAGTGT+AGG - chr3_4:20515447-20515466 None:intergenic 45.0%
AAGTGTCCATGAGCGATTCT+TGG - chr3_4:20515461-20515480 None:intergenic 45.0%
TCGGGTTATTCCGTGAGATT+TGG + chr3_4:20515689-20515708 Msa0493870:CDS 45.0%
! GAAGGTGCAGCAAATGAAGG+TGG + chr3_4:20512977-20512996 Msa0493870:CDS 50.0%
GAATCACCACCGGTGCAATT+TGG - chr3_4:20514142-20514161 None:intergenic 50.0%
CTCAATCGCAGAATCACCAC+CGG - chr3_4:20514152-20514171 None:intergenic 50.0%
CTTCGGCATGAGCTAGAAGT+TGG - chr3_4:20514195-20514214 None:intergenic 50.0%
CAGGTACCAGTTAGCTACCA+AGG - chr3_4:20514438-20514457 None:intergenic 50.0%
CAGCTCTTTCAGCAGCTTTC+TGG - chr3_4:20514484-20514503 None:intergenic 50.0%
GGTTTCCCATTTCGCTCAAC+TGG - chr3_4:20515074-20515093 None:intergenic 50.0%
ATCGGTCCAAGAATCGCTCA+TGG + chr3_4:20515452-20515471 Msa0493870:CDS 50.0%
ACGAGAAACTTTCTGCGCTG+TGG + chr3_4:20515750-20515769 Msa0493870:CDS 50.0%
AGCAGGATCCTCCTCATACC+AGG + chr3_4:20512781-20512800 Msa0493870:CDS 55.0%
GCAAATGGACGAATGGCACC+CGG + chr3_4:20514094-20514113 Msa0493870:CDS 55.0%
CACCCGGTCGTTGTTCTAGT+TGG + chr3_4:20514110-20514129 Msa0493870:CDS 55.0%
AGGCAAGGTGCAAACGTCCA+AGG + chr3_4:20515626-20515645 Msa0493870:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 20512632 20515844 20512632 ID=Msa0493870;Name=Msa0493870
chr3_4 mRNA 20512632 20515844 20512632 ID=Msa0493870-mRNA-1;Parent=Msa0493870;Name=Msa0493870-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|13|0|530
chr3_4 exon 20512632 20512802 20512632 ID=Msa0493870-mRNA-1:exon:5324;Parent=Msa0493870-mRNA-1
chr3_4 exon 20512974 20513043 20512974 ID=Msa0493870-mRNA-1:exon:5325;Parent=Msa0493870-mRNA-1
chr3_4 exon 20513161 20513219 20513161 ID=Msa0493870-mRNA-1:exon:5326;Parent=Msa0493870-mRNA-1
chr3_4 exon 20513464 20513539 20513464 ID=Msa0493870-mRNA-1:exon:5327;Parent=Msa0493870-mRNA-1
chr3_4 exon 20513640 20513717 20513640 ID=Msa0493870-mRNA-1:exon:5328;Parent=Msa0493870-mRNA-1
chr3_4 exon 20513810 20513897 20513810 ID=Msa0493870-mRNA-1:exon:5329;Parent=Msa0493870-mRNA-1
chr3_4 exon 20513988 20514243 20513988 ID=Msa0493870-mRNA-1:exon:5330;Parent=Msa0493870-mRNA-1
chr3_4 exon 20514407 20514522 20514407 ID=Msa0493870-mRNA-1:exon:5331;Parent=Msa0493870-mRNA-1
chr3_4 exon 20514752 20514969 20514752 ID=Msa0493870-mRNA-1:exon:5332;Parent=Msa0493870-mRNA-1
chr3_4 exon 20515075 20515106 20515075 ID=Msa0493870-mRNA-1:exon:5333;Parent=Msa0493870-mRNA-1
chr3_4 exon 20515195 20515297 20515195 ID=Msa0493870-mRNA-1:exon:5334;Parent=Msa0493870-mRNA-1
chr3_4 exon 20515424 20515532 20515424 ID=Msa0493870-mRNA-1:exon:5335;Parent=Msa0493870-mRNA-1
chr3_4 exon 20515628 20515844 20515628 ID=Msa0493870-mRNA-1:exon:5336;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20512632 20512802 20512632 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20512974 20513043 20512974 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20513161 20513219 20513161 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20513464 20513539 20513464 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20513640 20513717 20513640 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20513810 20513897 20513810 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20513988 20514243 20513988 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20514407 20514522 20514407 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20514752 20514969 20514752 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20515075 20515106 20515075 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20515195 20515297 20515195 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20515424 20515532 20515424 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
chr3_4 CDS 20515628 20515844 20515628 ID=Msa0493870-mRNA-1:cds;Parent=Msa0493870-mRNA-1
Gene Sequence

>Msa0493870

ATGGCATTCAATTACCTTCTCTGCCTAATTGCTTTTGCACTTGTGCTTAGCAAAACAAATGTCAATTGCATTGAAACTATTGAAGTTGATCCACTTCTTGATGTTGCTTCATTGAGTAGAAACAGTTTCCCTAAAGGATTTATATTTGGAGCAGGATCCTCCTCATACCAGTTTGAAGGTGCAGCAAATGAAGGTGGTAGAACACCAAGTATATGGGATACTTTCACCCATAAATATCCAGAAAAGATCAAAGATAGAAGCAATGCAGATGTAGCCATTGATTCATATCACAACTACAAGGAAGATGTTAGAATCATCAAGGATATGAACTTGGATTCATACAGATTCTCCTTATCCTGGTCTAGAATATTGCCAAAAGGAAAGCTTAGTGGTGGCATAAATCAAGAAGGAATCAACTATTACAATAATTTCATCAACGAGTTATTGGCTAATGGTATAAAACCATTGGTGACTCTTTTTCATTGGGATCTCCCACAAGCTTTAGAAGATGAGTATGGTGGTTTCTTAAGTCCTCTCATAGTAAAAGATTTCCAAGACTATGCAGAACTTTGCTTTAAGGAATTTGGTGATAGAGTGAAATATTGGGTTACTTTGAATGAACCATGGAGTTACAGTCAAAATGGCTATGCAAATGGACGAATGGCACCCGGTCGTTGTTCTAGTTGGTTGAATCCAAATTGCACCGGTGGTGATTCTGCGATTGAGCCCTATATAGTCACACACTACCAACTTCTAGCTCATGCCGAAGCCGTCAATGTGTACAAGACAAAGTATCAGGAAACTCAAAAGGGTGTAATAGGTATAACCTTGGTAGCTAACTGGTACCTGCCACTCTCAGATTCCAAATCTGACCAGAAAGCTGCTGAAAGAGCTGTTGACTTCATGTATGGATGGTTTATGGATCCACTGACAACAGGAGATTATCCAAAAAGCATGAGATCCCTTGTTGGAGCAAGATTACCAAAATTCAATGCAAAACAATCTAAGCTACTCATTGGTTCATTTGATTTTATTGGTTTGAACTATTATTCTTCAACTTATGCCTCAGATGCACCATTTCTAAGCAATGCTAGACCTAGCTACTTGACAGATTCTTTGGTTAATCCAGCATTTGAGCGAAATGGGAAACCTATTGGTATTAAGATTGCTTCTGATTGGTTGTATGTTTATCCGAGAGGAATTCGTGATCTTCTGTTATACACCAAGGAAAAGTACAATAACCCGTTGATTTACATCACTGAAAATGGTATTAACGAGTACAGTGATCCTACACTATCGGTCCAAGAATCGCTCATGGACACTTTTCGAATTGATTACCATTATCGTCATCTATATTATCTTCGATCTGCAATTGAGCAAGGTGCAAACGTCCAAGGATATTACATATGGTCCTTGTTCGACAATTTTGAATGGTGCTCGGGTTATTCCGTGAGATTTGGAATGACATTTGTGGATTACAAGAATGGTTTGAAAAGATACGAGAAACTTTCTGCGCTGTGGTTCAAGAATTTTCTCAGAAAAGAAACTAAACTTATGTTTCTTGTGAGAAAAGTTATTAGTTTTATTCATTAA
Protein sequence

>Msa0493870

MAFNYLLCLIAFALVLSKTNVNCIETIEVDPLLDVASLSRNSFPKGFIFGAGSSSYQFEGAANEGGRTPSIWDTFTHKYPEKIKDRSNADVAIDSYHNYKEDVRIIKDMNLDSYRFSLSWSRILPKGKLSGGINQEGINYYNNFINELLANGIKPLVTLFHWDLPQALEDEYGGFLSPLIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNPNCTGGDSAIEPYIVTHYQLLAHAEAVNVYKTKYQETQKGVIGITLVANWYLPLSDSKSDQKAAERAVDFMYGWFMDPLTTGDYPKSMRSLVGARLPKFNAKQSKLLIGSFDFIGLNYYSSTYASDAPFLSNARPSYLTDSLVNPAFERNGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYSDPTLSVQESLMDTFRIDYHYRHLYYLRSAIEQGANVQGYYIWSLFDNFEWCSGYSVRFGMTFVDYKNGLKRYEKLSALWFKNFLRKETKLMFLVRKVISFIH*