AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603300 MtrunA17_Chr4g0031511 97.068 307 9 0 1 307 1 307 0.0 617
Msa0603300 MtrunA17_Chr1g0187501 44.311 167 93 0 7 173 8 174 1.67e-47 161
Msa0603300 MtrunA17_Chr7g0214661 32.877 146 94 2 16 161 12 153 5.30e-18 84.7
Msa0603300 MtrunA17_Chr1g0151921 30.137 146 101 1 16 161 11 155 1.16e-17 83.2
Msa0603300 MtrunA17_Chr7g0214591 30.709 127 71 2 37 161 18 129 2.77e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603300 AT3G46540.1 57.471 261 84 7 1 248 13 259 2.48e-82 251
Msa0603300 AT3G46540.2 57.471 261 84 7 1 248 1 247 2.92e-82 251
Msa0603300 AT3G46540.3 54.222 225 77 6 36 248 1 211 4.62e-62 197
Msa0603300 AT1G08670.1 45.714 175 93 2 1 173 5 179 5.19e-48 160
Msa0603300 AT3G23350.1 43.931 173 95 1 5 175 6 178 1.13e-46 159
Msa0603300 AT3G23350.2 43.931 173 95 1 5 175 7 179 1.24e-46 159
Msa0603300 AT1G08670.2 41.803 122 70 1 53 173 1 122 1.92e-28 108
Msa0603300 AT2G43160.4 32.877 146 94 2 16 161 12 153 5.72e-18 84.7
Msa0603300 AT2G43160.3 32.877 146 94 2 16 161 12 153 6.45e-18 84.7
Msa0603300 AT2G43160.2 32.877 146 94 2 16 161 12 153 6.45e-18 84.7
Msa0603300 AT2G43160.5 32.877 146 94 2 16 161 12 153 6.45e-18 84.7
Msa0603300 AT2G43160.1 32.877 146 94 2 16 161 12 153 6.45e-18 84.7
Msa0603300 AT5G11710.2 28.082 146 104 1 16 161 11 155 4.14e-16 79.0
Msa0603300 AT5G11710.1 28.082 146 104 1 16 161 11 155 4.14e-16 79.0
Msa0603300 AT5G11710.3 28.082 146 104 1 16 161 11 155 4.14e-16 79.0
Msa0603300 AT3G59290.1 35.433 127 81 1 34 160 27 152 7.36e-16 78.6

Find 73 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCCTCTGCTACACTTTC+TGG 0.104086 4_2:+47740922 None:intergenic
CATTTCTGTTGTTGAATTAA+AGG 0.166107 4_2:+47740080 None:intergenic
ATCAAGTTCTAAAGAAAATA+TGG 0.298192 4_2:-47740211 Msa0603300:CDS
GCGGAGAAGACGATTCTTCT+AGG 0.298733 4_2:-47740134 Msa0603300:CDS
TGAACTATGAAAATAGATAT+TGG 0.301860 4_2:-47739886 Msa0603300:three_prime_UTR
TGGAGAGTCAGAATCACTTT+TGG 0.312508 4_2:-47740160 Msa0603300:CDS
CTAAATTTGAAAAGAAGAAT+TGG 0.317894 4_2:-47740996 Msa0603300:CDS
ACCCGTTCTGATCAATATAT+TGG 0.319311 4_2:+47740860 None:intergenic
ATTTCTGTTGTTGAATTAAA+GGG 0.325448 4_2:+47740081 None:intergenic
GACAATTTGCAGGTTCAATT+GGG 0.329268 4_2:-47740550 Msa0603300:intron
TTATAGAGATTCTACATAAA+AGG 0.331852 4_2:-47741283 Msa0603300:intron
TGACAATTTGCAGGTTCAAT+TGG 0.347533 4_2:-47740551 Msa0603300:intron
AAAGAAACTGTGACCTTTGA+AGG 0.351135 4_2:+47739909 None:intergenic
ATCATCATCTTTGTATATCA+TGG 0.354388 4_2:+47740266 None:intergenic
TCAAGAGGTATTCAAGGTTT+CGG 0.389050 4_2:-47740435 Msa0603300:CDS
AAGAAAATATGGAACCTAGT+AGG 0.398302 4_2:-47740200 Msa0603300:CDS
CTGATTTCTTTCTCACAGTT+AGG 0.420075 4_2:+47740526 None:intergenic
AAGTTCCACGCCTCCCTACT+AGG 0.421202 4_2:+47740186 None:intergenic
AGAGAGAGTAATGAAACTAT+TGG 0.421249 4_2:-47740505 Msa0603300:CDS
AATTCATCTTTCTCAACCTT+AGG 0.422317 4_2:-47740300 Msa0603300:CDS
CTTGAGCATTTGTTGACTCA+TGG 0.422333 4_2:-47740946 Msa0603300:CDS
TCCAATATATTGATCAGAAC+GGG 0.423953 4_2:-47740861 Msa0603300:intron
AAGAAAGAAACCAATGTAGA+AGG 0.430906 4_2:-47740461 Msa0603300:CDS
CAATGATTTCTCGCGAAGAA+TGG 0.431381 4_2:+47740380 None:intergenic
ATGATAGAAGAGGCAACTAA+TGG 0.435665 4_2:-47741383 Msa0603300:CDS
AAGACGATTCTTCTAGGCTT+GGG 0.437856 4_2:-47740128 Msa0603300:CDS
TCCTTGCTTTCTGCTAGAGA+TGG 0.439226 4_2:-47740045 Msa0603300:CDS
ATATACAAAGATGATGATAT+AGG 0.448838 4_2:-47740261 Msa0603300:CDS
CTCAAACAACTACGAAGATC+AGG 0.449845 4_2:-47740328 Msa0603300:CDS
CTTACACAATGTATAAATAG+AGG 0.454200 4_2:+47739852 None:intergenic
AAATCATTGCCAACCACATT+CGG 0.454765 4_2:-47740366 Msa0603300:CDS
AGGTTATCAAGAGGTATTCA+AGG 0.457152 4_2:-47740441 Msa0603300:CDS
TAGTAGGGAGGCGTGGAACT+TGG 0.464296 4_2:-47740184 Msa0603300:CDS
GAAGACGATTCTTCTAGGCT+TGG 0.466472 4_2:-47740129 Msa0603300:CDS
AGAAAATATGGAACCTAGTA+GGG 0.473708 4_2:-47740199 Msa0603300:CDS
GATCTGAGGGTTACAGTAGT+TGG 0.473866 4_2:+47741347 None:intergenic
CACAATCAAGGAATTGTAAG+AGG 0.479866 4_2:+47740969 None:intergenic
TCGCGAAGAATGGCTTGTGT+TGG 0.484587 4_2:+47740390 None:intergenic
CTCTTGATAACCTTCTACAT+TGG 0.492948 4_2:+47740451 None:intergenic
GTTACAGTAGTTGGTGCCCA+TGG 0.502809 4_2:+47741356 None:intergenic
TAACAAGCTCACAGTTCTGC+AGG 0.506386 4_2:+47741540 None:intergenic
CAAATGCTCAAGCACAATCA+AGG 0.506589 4_2:+47740957 None:intergenic
TATATTGGAAACCTTTCAGC+TGG 0.516997 4_2:+47740875 None:intergenic
AGCCTTTGAAATTGATCTGA+GGG 0.520257 4_2:+47741334 None:intergenic
TTGGTAGAACCTCCCTTCAA+AGG 0.523738 4_2:-47739922 Msa0603300:three_prime_UTR
AGGCAACTAATGGAAATCCA+TGG 0.532106 4_2:-47741373 Msa0603300:CDS
GTAATGAAACTATTGGAAGA+AGG 0.539452 4_2:-47740498 Msa0603300:CDS
AGGGAGGCGTGGAACTTGGA+TGG 0.541550 4_2:-47740180 Msa0603300:CDS
ATGTTTATTTCCTTCCTCAA+AGG 0.541875 4_2:+47741691 None:intergenic
GCTAGAGATGGAATACTACA+AGG 0.551404 4_2:-47740033 Msa0603300:CDS
CAGCCTTTGAAATTGATCTG+AGG 0.552074 4_2:+47741333 None:intergenic
TTCCAATATATTGATCAGAA+CGG 0.554896 4_2:-47740862 Msa0603300:CDS
GATGTTATTGACCAGCTGAA+AGG 0.568995 4_2:-47740886 Msa0603300:CDS
TCCATCTCTAGCAGAAAGCA+AGG 0.572809 4_2:+47740044 None:intergenic
TTTCTGTTGTTGAATTAAAG+GGG 0.580526 4_2:+47740082 None:intergenic
AATTTGAAAAGAAGAATTGG+AGG 0.586374 4_2:-47740993 Msa0603300:CDS
ACAATTTGCAGGTTCAATTG+GGG 0.587617 4_2:-47740549 Msa0603300:intron
TTGAGCTAGATGATTATAGG+AGG 0.590229 4_2:-47741307 Msa0603300:CDS
GGCAACTAATGGAAATCCAT+GGG 0.593719 4_2:-47741372 Msa0603300:CDS
AAGAAACTGTGACCTTTGAA+GGG 0.599886 4_2:+47739910 None:intergenic
AACCCTCAGATCAATTTCAA+AGG 0.602620 4_2:-47741336 Msa0603300:CDS
TGAATTACATCTACCGAATG+TGG 0.602951 4_2:+47740353 None:intergenic
ATTTGAAAAGAAGAATTGGA+GGG 0.607233 4_2:-47740992 Msa0603300:CDS
ACGATTCTTCTAGGCTTGGG+AGG 0.614811 4_2:-47740125 Msa0603300:CDS
TTACATCTACCGAATGTGGT+TGG 0.615754 4_2:+47740357 None:intergenic
GGAAGAAGGAAATCTTCTCA+AGG 0.620593 4_2:-47740484 Msa0603300:CDS
AAACTGTGACCTTTGAAGGG+AGG 0.635055 4_2:+47739913 None:intergenic
TGGACCAGAAAGTGTAGCAG+AGG 0.637626 4_2:-47740926 Msa0603300:CDS
TGGAACCTAGTAGGGAGGCG+TGG 0.647069 4_2:-47740191 Msa0603300:CDS
CAATGTAGAAGGTTATCAAG+AGG 0.650694 4_2:-47740450 Msa0603300:CDS
CTAGAGATGGAATACTACAA+GGG 0.670524 4_2:-47740032 Msa0603300:CDS
AAATATGGAACCTAGTAGGG+AGG 0.672681 4_2:-47740196 Msa0603300:CDS
TCTTTGAAGAATGATAGAAG+AGG 0.674445 4_2:-47741393 Msa0603300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAGTAAAAAAAATA+AGG + chr4_2:47740745-47740764 None:intergenic 10.0%
!! AAAATTGAGTAAAAAAAATA+AGG + chr4_2:47740745-47740764 None:intergenic 10.0%
!!! TTTTTAGGTAAACAATTTTT+TGG + chr4_2:47740941-47740960 None:intergenic 15.0%
!! AATTGTTTACCTAAAAAATT+TGG - chr4_2:47740944-47740963 Msa0603300:CDS 15.0%
!!! TTTTTAGGTAAACAATTTTT+TGG + chr4_2:47740941-47740960 None:intergenic 15.0%
!! AATTGTTTACCTAAAAAATT+TGG - chr4_2:47740944-47740963 Msa0603300:CDS 15.0%
!!! TTTTTTGAATTCATAGAAAG+GGG + chr4_2:47739947-47739966 None:intergenic 20.0%
!!! GTTTTTTGAATTCATAGAAA+GGG + chr4_2:47739948-47739967 None:intergenic 20.0%
!!! TGTTTTTTGAATTCATAGAA+AGG + chr4_2:47739949-47739968 None:intergenic 20.0%
!! TTATAGAGATTCTACATAAA+AGG - chr4_2:47740287-47740306 Msa0603300:CDS 20.0%
!! ATGCTAAGTAAAAAAAATGA+GGG + chr4_2:47740325-47740344 None:intergenic 20.0%
!!! GATACAATTCTAAAATAGAT+TGG - chr4_2:47740551-47740570 Msa0603300:intron 20.0%
!! CTAAATTTGAAAAGAAGAAT+TGG - chr4_2:47740574-47740593 Msa0603300:intron 20.0%
!!! ATTCAATGACCAAATTTTTT+AGG + chr4_2:47740956-47740975 None:intergenic 20.0%
!! ATATACAAAGATGATGATAT+AGG - chr4_2:47741309-47741328 Msa0603300:CDS 20.0%
!!! ATCAAGTTCTAAAGAAAATA+TGG - chr4_2:47741359-47741378 Msa0603300:CDS 20.0%
!! ATTTCTGTTGTTGAATTAAA+GGG + chr4_2:47741492-47741511 None:intergenic 20.0%
!!! TTTATCTATCATCATGTTTT+TGG - chr4_2:47741629-47741648 Msa0603300:CDS 20.0%
!! TGAACTATGAAAATAGATAT+TGG - chr4_2:47741684-47741703 Msa0603300:five_prime_UTR 20.0%
!!! TTTTTTGAATTCATAGAAAG+GGG + chr4_2:47739947-47739966 None:intergenic 20.0%
!!! GTTTTTTGAATTCATAGAAA+GGG + chr4_2:47739948-47739967 None:intergenic 20.0%
!!! TGTTTTTTGAATTCATAGAA+AGG + chr4_2:47739949-47739968 None:intergenic 20.0%
!! TTATAGAGATTCTACATAAA+AGG - chr4_2:47740287-47740306 Msa0603300:CDS 20.0%
!! ATGCTAAGTAAAAAAAATGA+GGG + chr4_2:47740325-47740344 None:intergenic 20.0%
!!! GATACAATTCTAAAATAGAT+TGG - chr4_2:47740551-47740570 Msa0603300:intron 20.0%
!! CTAAATTTGAAAAGAAGAAT+TGG - chr4_2:47740574-47740593 Msa0603300:intron 20.0%
!!! ATTCAATGACCAAATTTTTT+AGG + chr4_2:47740956-47740975 None:intergenic 20.0%
!! ATATACAAAGATGATGATAT+AGG - chr4_2:47741309-47741328 Msa0603300:CDS 20.0%
!!! ATCAAGTTCTAAAGAAAATA+TGG - chr4_2:47741359-47741378 Msa0603300:CDS 20.0%
!! ATTTCTGTTGTTGAATTAAA+GGG + chr4_2:47741492-47741511 None:intergenic 20.0%
!!! TTTATCTATCATCATGTTTT+TGG - chr4_2:47741629-47741648 Msa0603300:CDS 20.0%
!! TGAACTATGAAAATAGATAT+TGG - chr4_2:47741684-47741703 Msa0603300:five_prime_UTR 20.0%
! TGCTAAGTAAAAAAAATGAG+GGG + chr4_2:47740324-47740343 None:intergenic 25.0%
! CATGCTAAGTAAAAAAAATG+AGG + chr4_2:47740326-47740345 None:intergenic 25.0%
!!! ATTTCCAAGGTTTTAAATTG+CGG - chr4_2:47740352-47740371 Msa0603300:CDS 25.0%
!! TTTCGAAAACAATTTTGTCA+TGG - chr4_2:47740448-47740467 Msa0603300:CDS 25.0%
! TGTTACTAAATGAATCATGA+TGG - chr4_2:47740518-47740537 Msa0603300:CDS 25.0%
! AATTTGAAAAGAAGAATTGG+AGG - chr4_2:47740577-47740596 Msa0603300:intron 25.0%
! ATTTGAAAAGAAGAATTGGA+GGG - chr4_2:47740578-47740597 Msa0603300:intron 25.0%
! TTCCAATATATTGATCAGAA+CGG - chr4_2:47740708-47740727 Msa0603300:intron 25.0%
! AAGATATTATGACAATTTGC+AGG - chr4_2:47741010-47741029 Msa0603300:intron 25.0%
! ATCATCATCTTTGTATATCA+TGG + chr4_2:47741307-47741326 None:intergenic 25.0%
! TTTCTGTTGTTGAATTAAAG+GGG + chr4_2:47741491-47741510 None:intergenic 25.0%
! CATTTCTGTTGTTGAATTAA+AGG + chr4_2:47741493-47741512 None:intergenic 25.0%
! TGCTAAGTAAAAAAAATGAG+GGG + chr4_2:47740324-47740343 None:intergenic 25.0%
! CATGCTAAGTAAAAAAAATG+AGG + chr4_2:47740326-47740345 None:intergenic 25.0%
!!! ATTTCCAAGGTTTTAAATTG+CGG - chr4_2:47740352-47740371 Msa0603300:CDS 25.0%
!! TTTCGAAAACAATTTTGTCA+TGG - chr4_2:47740448-47740467 Msa0603300:CDS 25.0%
! TGTTACTAAATGAATCATGA+TGG - chr4_2:47740518-47740537 Msa0603300:CDS 25.0%
! AATTTGAAAAGAAGAATTGG+AGG - chr4_2:47740577-47740596 Msa0603300:intron 25.0%
! ATTTGAAAAGAAGAATTGGA+GGG - chr4_2:47740578-47740597 Msa0603300:intron 25.0%
! TTCCAATATATTGATCAGAA+CGG - chr4_2:47740708-47740727 Msa0603300:intron 25.0%
! AAGATATTATGACAATTTGC+AGG - chr4_2:47741010-47741029 Msa0603300:intron 25.0%
! ATCATCATCTTTGTATATCA+TGG + chr4_2:47741307-47741326 None:intergenic 25.0%
! TTTCTGTTGTTGAATTAAAG+GGG + chr4_2:47741491-47741510 None:intergenic 25.0%
! CATTTCTGTTGTTGAATTAA+AGG + chr4_2:47741493-47741512 None:intergenic 25.0%
!!! CTCTTTTTTTCTATCCTTTG+AGG - chr4_2:47739865-47739884 Msa0603300:three_prime_UTR 30.0%
!!! TTTTTTCTATCCTTTGAGGA+AGG - chr4_2:47739869-47739888 Msa0603300:three_prime_UTR 30.0%
ATGTTTATTTCCTTCCTCAA+AGG + chr4_2:47739882-47739901 None:intergenic 30.0%
ATATCCAAAACTATAGCTCT+AGG - chr4_2:47740126-47740145 Msa0603300:CDS 30.0%
! AAATCCTAGAGCTATAGTTT+TGG + chr4_2:47740133-47740152 None:intergenic 30.0%
! TCTTTGAAGAATGATAGAAG+AGG - chr4_2:47740177-47740196 Msa0603300:CDS 30.0%
! CTTTTGAGCTAGATGATTAT+AGG - chr4_2:47740260-47740279 Msa0603300:CDS 30.0%
GCTAAGTAAAAAAAATGAGG+GGG + chr4_2:47740323-47740342 None:intergenic 30.0%
! GCAATTTAAAACCTTGGAAA+TGG + chr4_2:47740353-47740372 None:intergenic 30.0%
GCAATCAAATTCGATATATG+TGG - chr4_2:47740412-47740431 Msa0603300:CDS 30.0%
TAGTAACAAAGAAGTGATCA+CGG + chr4_2:47740506-47740525 None:intergenic 30.0%
TCCAATATATTGATCAGAAC+GGG - chr4_2:47740709-47740728 Msa0603300:intron 30.0%
AGAGAGAGTAATGAAACTAT+TGG - chr4_2:47741065-47741084 Msa0603300:intron 30.0%
GTAATGAAACTATTGGAAGA+AGG - chr4_2:47741072-47741091 Msa0603300:intron 30.0%
AAGAAAGAAACCAATGTAGA+AGG - chr4_2:47741109-47741128 Msa0603300:intron 30.0%
AATTCATCTTTCTCAACCTT+AGG - chr4_2:47741270-47741289 Msa0603300:intron 30.0%
! CATGGTTTTCATATTACCTA+AGG + chr4_2:47741289-47741308 None:intergenic 30.0%
AAGAAAATATGGAACCTAGT+AGG - chr4_2:47741370-47741389 Msa0603300:CDS 30.0%
AGAAAATATGGAACCTAGTA+GGG - chr4_2:47741371-47741390 Msa0603300:CDS 30.0%
!!! CTCTTTTTTTCTATCCTTTG+AGG - chr4_2:47739865-47739884 Msa0603300:three_prime_UTR 30.0%
!!! TTTTTTCTATCCTTTGAGGA+AGG - chr4_2:47739869-47739888 Msa0603300:three_prime_UTR 30.0%
ATGTTTATTTCCTTCCTCAA+AGG + chr4_2:47739882-47739901 None:intergenic 30.0%
ATATCCAAAACTATAGCTCT+AGG - chr4_2:47740126-47740145 Msa0603300:CDS 30.0%
! AAATCCTAGAGCTATAGTTT+TGG + chr4_2:47740133-47740152 None:intergenic 30.0%
! TCTTTGAAGAATGATAGAAG+AGG - chr4_2:47740177-47740196 Msa0603300:CDS 30.0%
! CTTTTGAGCTAGATGATTAT+AGG - chr4_2:47740260-47740279 Msa0603300:CDS 30.0%
GCTAAGTAAAAAAAATGAGG+GGG + chr4_2:47740323-47740342 None:intergenic 30.0%
! GCAATTTAAAACCTTGGAAA+TGG + chr4_2:47740353-47740372 None:intergenic 30.0%
GCAATCAAATTCGATATATG+TGG - chr4_2:47740412-47740431 Msa0603300:CDS 30.0%
TAGTAACAAAGAAGTGATCA+CGG + chr4_2:47740506-47740525 None:intergenic 30.0%
TCCAATATATTGATCAGAAC+GGG - chr4_2:47740709-47740728 Msa0603300:intron 30.0%
AGAGAGAGTAATGAAACTAT+TGG - chr4_2:47741065-47741084 Msa0603300:intron 30.0%
GTAATGAAACTATTGGAAGA+AGG - chr4_2:47741072-47741091 Msa0603300:intron 30.0%
AAGAAAGAAACCAATGTAGA+AGG - chr4_2:47741109-47741128 Msa0603300:intron 30.0%
AATTCATCTTTCTCAACCTT+AGG - chr4_2:47741270-47741289 Msa0603300:intron 30.0%
! CATGGTTTTCATATTACCTA+AGG + chr4_2:47741289-47741308 None:intergenic 30.0%
AAGAAAATATGGAACCTAGT+AGG - chr4_2:47741370-47741389 Msa0603300:CDS 30.0%
AGAAAATATGGAACCTAGTA+GGG - chr4_2:47741371-47741390 Msa0603300:CDS 30.0%
! CAGTCTTGATTTTCTCTTTG+AGG + chr4_2:47739984-47740003 None:intergenic 35.0%
ATGATAGAAGAGGCAACTAA+TGG - chr4_2:47740187-47740206 Msa0603300:CDS 35.0%
AACCCTCAGATCAATTTCAA+AGG - chr4_2:47740234-47740253 Msa0603300:CDS 35.0%
!! AGCCTTTGAAATTGATCTGA+GGG + chr4_2:47740239-47740258 None:intergenic 35.0%
TTGAGCTAGATGATTATAGG+AGG - chr4_2:47740263-47740282 Msa0603300:CDS 35.0%
!!! GTGATCACGGTTTTAAATGA+AGG + chr4_2:47740493-47740512 None:intergenic 35.0%
CACAATCAAGGAATTGTAAG+AGG + chr4_2:47740604-47740623 None:intergenic 35.0%
TATATTGGAAACCTTTCAGC+TGG + chr4_2:47740698-47740717 None:intergenic 35.0%
ACCCGTTCTGATCAATATAT+TGG + chr4_2:47740713-47740732 None:intergenic 35.0%
! TCCTTTTCACCTAGTAAAGA+AGG - chr4_2:47740908-47740927 Msa0603300:CDS 35.0%
! CCTTTTCACCTAGTAAAGAA+GGG - chr4_2:47740909-47740928 Msa0603300:CDS 35.0%
!! GGTTTTAACCCTTCTTTACT+AGG + chr4_2:47740920-47740939 None:intergenic 35.0%
! GAATTTCTTCCAGTTGATAC+TGG - chr4_2:47740972-47740991 Msa0603300:CDS 35.0%
TGACAATTTGCAGGTTCAAT+TGG - chr4_2:47741019-47741038 Msa0603300:intron 35.0%
GACAATTTGCAGGTTCAATT+GGG - chr4_2:47741020-47741039 Msa0603300:intron 35.0%
ACAATTTGCAGGTTCAATTG+GGG - chr4_2:47741021-47741040 Msa0603300:intron 35.0%
CTGATTTCTTTCTCACAGTT+AGG + chr4_2:47741047-47741066 None:intergenic 35.0%
! CTCTTGATAACCTTCTACAT+TGG + chr4_2:47741122-47741141 None:intergenic 35.0%
CAATGTAGAAGGTTATCAAG+AGG - chr4_2:47741120-47741139 Msa0603300:intron 35.0%
!! AGGTTATCAAGAGGTATTCA+AGG - chr4_2:47741129-47741148 Msa0603300:intron 35.0%
!! TCAAGAGGTATTCAAGGTTT+CGG - chr4_2:47741135-47741154 Msa0603300:intron 35.0%
AAATCATTGCCAACCACATT+CGG - chr4_2:47741204-47741223 Msa0603300:intron 35.0%
TGAATTACATCTACCGAATG+TGG + chr4_2:47741220-47741239 None:intergenic 35.0%
!! TCAGAATCACTTTTGGATTG+CGG - chr4_2:47741417-47741436 Msa0603300:intron 35.0%
CTAGAGATGGAATACTACAA+GGG - chr4_2:47741538-47741557 Msa0603300:intron 35.0%
AAGAAACTGTGACCTTTGAA+GGG + chr4_2:47741663-47741682 None:intergenic 35.0%
AAAGAAACTGTGACCTTTGA+AGG + chr4_2:47741664-47741683 None:intergenic 35.0%
! CAGTCTTGATTTTCTCTTTG+AGG + chr4_2:47739984-47740003 None:intergenic 35.0%
ATGATAGAAGAGGCAACTAA+TGG - chr4_2:47740187-47740206 Msa0603300:CDS 35.0%
AACCCTCAGATCAATTTCAA+AGG - chr4_2:47740234-47740253 Msa0603300:CDS 35.0%
!! AGCCTTTGAAATTGATCTGA+GGG + chr4_2:47740239-47740258 None:intergenic 35.0%
TTGAGCTAGATGATTATAGG+AGG - chr4_2:47740263-47740282 Msa0603300:CDS 35.0%
!!! GTGATCACGGTTTTAAATGA+AGG + chr4_2:47740493-47740512 None:intergenic 35.0%
CACAATCAAGGAATTGTAAG+AGG + chr4_2:47740604-47740623 None:intergenic 35.0%
TATATTGGAAACCTTTCAGC+TGG + chr4_2:47740698-47740717 None:intergenic 35.0%
ACCCGTTCTGATCAATATAT+TGG + chr4_2:47740713-47740732 None:intergenic 35.0%
! TCCTTTTCACCTAGTAAAGA+AGG - chr4_2:47740908-47740927 Msa0603300:CDS 35.0%
! CCTTTTCACCTAGTAAAGAA+GGG - chr4_2:47740909-47740928 Msa0603300:CDS 35.0%
!! GGTTTTAACCCTTCTTTACT+AGG + chr4_2:47740920-47740939 None:intergenic 35.0%
! GAATTTCTTCCAGTTGATAC+TGG - chr4_2:47740972-47740991 Msa0603300:CDS 35.0%
TGACAATTTGCAGGTTCAAT+TGG - chr4_2:47741019-47741038 Msa0603300:intron 35.0%
GACAATTTGCAGGTTCAATT+GGG - chr4_2:47741020-47741039 Msa0603300:intron 35.0%
ACAATTTGCAGGTTCAATTG+GGG - chr4_2:47741021-47741040 Msa0603300:intron 35.0%
CTGATTTCTTTCTCACAGTT+AGG + chr4_2:47741047-47741066 None:intergenic 35.0%
! CTCTTGATAACCTTCTACAT+TGG + chr4_2:47741122-47741141 None:intergenic 35.0%
CAATGTAGAAGGTTATCAAG+AGG - chr4_2:47741120-47741139 Msa0603300:intron 35.0%
!! AGGTTATCAAGAGGTATTCA+AGG - chr4_2:47741129-47741148 Msa0603300:intron 35.0%
!! TCAAGAGGTATTCAAGGTTT+CGG - chr4_2:47741135-47741154 Msa0603300:intron 35.0%
AAATCATTGCCAACCACATT+CGG - chr4_2:47741204-47741223 Msa0603300:intron 35.0%
TGAATTACATCTACCGAATG+TGG + chr4_2:47741220-47741239 None:intergenic 35.0%
!! TCAGAATCACTTTTGGATTG+CGG - chr4_2:47741417-47741436 Msa0603300:intron 35.0%
CTAGAGATGGAATACTACAA+GGG - chr4_2:47741538-47741557 Msa0603300:intron 35.0%
AAGAAACTGTGACCTTTGAA+GGG + chr4_2:47741663-47741682 None:intergenic 35.0%
AAAGAAACTGTGACCTTTGA+AGG + chr4_2:47741664-47741683 None:intergenic 35.0%
AGGCAACTAATGGAAATCCA+TGG - chr4_2:47740197-47740216 Msa0603300:CDS 40.0%
GGCAACTAATGGAAATCCAT+GGG - chr4_2:47740198-47740217 Msa0603300:CDS 40.0%
!! CAGCCTTTGAAATTGATCTG+AGG + chr4_2:47740240-47740259 None:intergenic 40.0%
TAGCATGTTCACCATTTCCA+AGG - chr4_2:47740339-47740358 Msa0603300:CDS 40.0%
CAAATGCTCAAGCACAATCA+AGG + chr4_2:47740616-47740635 None:intergenic 40.0%
!! CTTGAGCATTTGTTGACTCA+TGG - chr4_2:47740624-47740643 Msa0603300:intron 40.0%
AATTCCTCTGCTACACTTTC+TGG + chr4_2:47740651-47740670 None:intergenic 40.0%
GATGTTATTGACCAGCTGAA+AGG - chr4_2:47740684-47740703 Msa0603300:intron 40.0%
GTGAAAAGGACCTGATAATC+TGG + chr4_2:47740898-47740917 None:intergenic 40.0%
CCCTTCTTTACTAGGTGAAA+AGG + chr4_2:47740912-47740931 None:intergenic 40.0%
GGAAGAAGGAAATCTTCTCA+AGG - chr4_2:47741086-47741105 Msa0603300:intron 40.0%
CAATGATTTCTCGCGAAGAA+TGG + chr4_2:47741193-47741212 None:intergenic 40.0%
TTACATCTACCGAATGTGGT+TGG + chr4_2:47741216-47741235 None:intergenic 40.0%
CTCAAACAACTACGAAGATC+AGG - chr4_2:47741242-47741261 Msa0603300:intron 40.0%
AAATATGGAACCTAGTAGGG+AGG - chr4_2:47741374-47741393 Msa0603300:CDS 40.0%
! TGGAGAGTCAGAATCACTTT+TGG - chr4_2:47741410-47741429 Msa0603300:intron 40.0%
AAGACGATTCTTCTAGGCTT+GGG - chr4_2:47741442-47741461 Msa0603300:intron 40.0%
GCTAGAGATGGAATACTACA+AGG - chr4_2:47741537-47741556 Msa0603300:intron 40.0%
AGGCAACTAATGGAAATCCA+TGG - chr4_2:47740197-47740216 Msa0603300:CDS 40.0%
GGCAACTAATGGAAATCCAT+GGG - chr4_2:47740198-47740217 Msa0603300:CDS 40.0%
!! CAGCCTTTGAAATTGATCTG+AGG + chr4_2:47740240-47740259 None:intergenic 40.0%
TAGCATGTTCACCATTTCCA+AGG - chr4_2:47740339-47740358 Msa0603300:CDS 40.0%
CAAATGCTCAAGCACAATCA+AGG + chr4_2:47740616-47740635 None:intergenic 40.0%
!! CTTGAGCATTTGTTGACTCA+TGG - chr4_2:47740624-47740643 Msa0603300:intron 40.0%
AATTCCTCTGCTACACTTTC+TGG + chr4_2:47740651-47740670 None:intergenic 40.0%
GATGTTATTGACCAGCTGAA+AGG - chr4_2:47740684-47740703 Msa0603300:intron 40.0%
GTGAAAAGGACCTGATAATC+TGG + chr4_2:47740898-47740917 None:intergenic 40.0%
CCCTTCTTTACTAGGTGAAA+AGG + chr4_2:47740912-47740931 None:intergenic 40.0%
GGAAGAAGGAAATCTTCTCA+AGG - chr4_2:47741086-47741105 Msa0603300:intron 40.0%
CAATGATTTCTCGCGAAGAA+TGG + chr4_2:47741193-47741212 None:intergenic 40.0%
TTACATCTACCGAATGTGGT+TGG + chr4_2:47741216-47741235 None:intergenic 40.0%
CTCAAACAACTACGAAGATC+AGG - chr4_2:47741242-47741261 Msa0603300:intron 40.0%
AAATATGGAACCTAGTAGGG+AGG - chr4_2:47741374-47741393 Msa0603300:CDS 40.0%
! TGGAGAGTCAGAATCACTTT+TGG - chr4_2:47741410-47741429 Msa0603300:intron 40.0%
AAGACGATTCTTCTAGGCTT+GGG - chr4_2:47741442-47741461 Msa0603300:intron 40.0%
GCTAGAGATGGAATACTACA+AGG - chr4_2:47741537-47741556 Msa0603300:intron 40.0%
!!! AGGGGTGCTCATTTTGCTAT+TGG + chr4_2:47739929-47739948 None:intergenic 45.0%
TAACAAGCTCACAGTTCTGC+AGG + chr4_2:47740033-47740052 None:intergenic 45.0%
GATCTGAGGGTTACAGTAGT+TGG + chr4_2:47740226-47740245 None:intergenic 45.0%
! GCGACCGCAATTTAAAACCT+TGG + chr4_2:47740359-47740378 None:intergenic 45.0%
CGAGCAAACTCCAGATTATC+AGG - chr4_2:47740885-47740904 Msa0603300:CDS 45.0%
GAAGACGATTCTTCTAGGCT+TGG - chr4_2:47741441-47741460 Msa0603300:intron 45.0%
TCCTTGCTTTCTGCTAGAGA+TGG - chr4_2:47741525-47741544 Msa0603300:intron 45.0%
TCCATCTCTAGCAGAAAGCA+AGG + chr4_2:47741529-47741548 None:intergenic 45.0%
TTGGTAGAACCTCCCTTCAA+AGG - chr4_2:47741648-47741667 Msa0603300:exon 45.0%
! AAACTGTGACCTTTGAAGGG+AGG + chr4_2:47741660-47741679 None:intergenic 45.0%
!!! AGGGGTGCTCATTTTGCTAT+TGG + chr4_2:47739929-47739948 None:intergenic 45.0%
TAACAAGCTCACAGTTCTGC+AGG + chr4_2:47740033-47740052 None:intergenic 45.0%
GATCTGAGGGTTACAGTAGT+TGG + chr4_2:47740226-47740245 None:intergenic 45.0%
! GCGACCGCAATTTAAAACCT+TGG + chr4_2:47740359-47740378 None:intergenic 45.0%
CGAGCAAACTCCAGATTATC+AGG - chr4_2:47740885-47740904 Msa0603300:CDS 45.0%
GAAGACGATTCTTCTAGGCT+TGG - chr4_2:47741441-47741460 Msa0603300:intron 45.0%
TCCTTGCTTTCTGCTAGAGA+TGG - chr4_2:47741525-47741544 Msa0603300:intron 45.0%
TCCATCTCTAGCAGAAAGCA+AGG + chr4_2:47741529-47741548 None:intergenic 45.0%
TTGGTAGAACCTCCCTTCAA+AGG - chr4_2:47741648-47741667 Msa0603300:exon 45.0%
! AAACTGTGACCTTTGAAGGG+AGG + chr4_2:47741660-47741679 None:intergenic 45.0%
! GTTACAGTAGTTGGTGCCCA+TGG + chr4_2:47740217-47740236 None:intergenic 50.0%
! TGGACCAGAAAGTGTAGCAG+AGG - chr4_2:47740644-47740663 Msa0603300:intron 50.0%
CTTGCAGCACCAGTATCAAC+TGG + chr4_2:47740984-47741003 None:intergenic 50.0%
! TCGCGAAGAATGGCTTGTGT+TGG + chr4_2:47741183-47741202 None:intergenic 50.0%
GCGGAGAAGACGATTCTTCT+AGG - chr4_2:47741436-47741455 Msa0603300:intron 50.0%
ACGATTCTTCTAGGCTTGGG+AGG - chr4_2:47741445-47741464 Msa0603300:intron 50.0%
! GTTACAGTAGTTGGTGCCCA+TGG + chr4_2:47740217-47740236 None:intergenic 50.0%
! TGGACCAGAAAGTGTAGCAG+AGG - chr4_2:47740644-47740663 Msa0603300:intron 50.0%
CTTGCAGCACCAGTATCAAC+TGG + chr4_2:47740984-47741003 None:intergenic 50.0%
! TCGCGAAGAATGGCTTGTGT+TGG + chr4_2:47741183-47741202 None:intergenic 50.0%
GCGGAGAAGACGATTCTTCT+AGG - chr4_2:47741436-47741455 Msa0603300:intron 50.0%
ACGATTCTTCTAGGCTTGGG+AGG - chr4_2:47741445-47741464 Msa0603300:intron 50.0%
AAGGTCTGCGAGCGCAATCT+AGG + chr4_2:47740474-47740493 None:intergenic 55.0%
AAGTTCCACGCCTCCCTACT+AGG + chr4_2:47741387-47741406 None:intergenic 55.0%
! TAGTAGGGAGGCGTGGAACT+TGG - chr4_2:47741386-47741405 Msa0603300:CDS 55.0%
AAGGTCTGCGAGCGCAATCT+AGG + chr4_2:47740474-47740493 None:intergenic 55.0%
AAGTTCCACGCCTCCCTACT+AGG + chr4_2:47741387-47741406 None:intergenic 55.0%
! TAGTAGGGAGGCGTGGAACT+TGG - chr4_2:47741386-47741405 Msa0603300:CDS 55.0%
TGGAACCTAGTAGGGAGGCG+TGG - chr4_2:47741379-47741398 Msa0603300:CDS 60.0%
! AGGGAGGCGTGGAACTTGGA+TGG - chr4_2:47741390-47741409 Msa0603300:intron 60.0%
TGGAACCTAGTAGGGAGGCG+TGG - chr4_2:47741379-47741398 Msa0603300:CDS 60.0%
! AGGGAGGCGTGGAACTTGGA+TGG - chr4_2:47741390-47741409 Msa0603300:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 47739857 47741735 47739857 ID=Msa0603300;Name=Msa0603300
chr4_2 mRNA 47739857 47741735 47739857 ID=Msa0603300-mRNA-1;Parent=Msa0603300;Name=Msa0603300-mRNA-1;_AED=0.10;_eAED=0.10;_QI=80|1|1|1|1|1|4|169|307
chr4_2 exon 47739857 47740560 47739857 ID=Msa0603300-mRNA-1:exon:10923;Parent=Msa0603300-mRNA-1
chr4_2 exon 47740862 47741023 47740862 ID=Msa0603300-mRNA-1:exon:10922;Parent=Msa0603300-mRNA-1
chr4_2 exon 47741284 47741406 47741284 ID=Msa0603300-mRNA-1:exon:10921;Parent=Msa0603300-mRNA-1
chr4_2 exon 47741552 47741735 47741552 ID=Msa0603300-mRNA-1:exon:10920;Parent=Msa0603300-mRNA-1
chr4_2 five_prime_UTR 47741656 47741735 47741656 ID=Msa0603300-mRNA-1:five_prime_utr;Parent=Msa0603300-mRNA-1
chr4_2 CDS 47741552 47741655 47741552 ID=Msa0603300-mRNA-1:cds;Parent=Msa0603300-mRNA-1
chr4_2 CDS 47741284 47741406 47741284 ID=Msa0603300-mRNA-1:cds;Parent=Msa0603300-mRNA-1
chr4_2 CDS 47740862 47741023 47740862 ID=Msa0603300-mRNA-1:cds;Parent=Msa0603300-mRNA-1
chr4_2 CDS 47740026 47740560 47740026 ID=Msa0603300-mRNA-1:cds;Parent=Msa0603300-mRNA-1
chr4_2 three_prime_UTR 47739857 47740025 47739857 ID=Msa0603300-mRNA-1:three_prime_utr;Parent=Msa0603300-mRNA-1
Gene Sequence

>Msa0603300

ATGAGCACCCCTTTCTATGAATTCAAAAAACAAGCTTCATTTTTCCTCAAAGAGAAAATCAAGACTGCTAGATTAGCTCTAACAGATGTCACACCTGCAGAACTAATGATAGAAGAGGCAACTAATGGAAATCCATGGGCACCAACTACTGTAACCCTCAGATCAATTTCAAAGGCTGCTTTTGAGCTAGATGATTATAGGAGGATTATAGAGATTCTACATAAAAGATTGGCTAAATTTGAAAAGAAGAATTGGAGGGCCTCTTACAATTCCTTGATTGTGCTTGAGCATTTGTTGACTCATGGACCAGAAAGTGTAGCAGAGGAATTTCAGAGTGACAAAGATGTTATTGACCAGCTGAAAGGTTTCCAATATATTGATCAGAACGGGTTCAATTGGGGCCTAACTGTGAGAAAGAAATCAGAGAGAGTAATGAAACTATTGGAAGAAGGAAATCTTCTCAAGGAAGAAAGAAACCAATGTAGAAGGTTATCAAGAGGTATTCAAGGTTTCGGAAGTTTCACTCAAAGATCAACTCCAACACAAGCCATTCTTCGCGAGAAATCATTGCCAACCACATTCGGTAGATGTAATTCAGACTCAAACAACTACGAAGATCAGGAAAATAATTCATCTTTCTCAACCTTAGGTAATATGAAAACCATGATATACAAAGATGATGATATAGGCAACAATCAATTGCTTCAGAAATCTGAATCAAGTTCTAAAGAAAATATGGAACCTAGTAGGGAGGCGTGGAACTTGGATGGAGAGTCAGAATCACTTTTGGATTGCGGAGAAGACGATTCTTCTAGGCTTGGGAGGTTCAAAATAGAAGATGATCACCCCTTTAATTCAACAACAGAAATGAATAGTACTGCTTCCTTGCTTTCTGCTAGAGATGGAATACTACAAGGGTGTTGA

Protein sequence

>Msa0603300

MSTPFYEFKKQASFFLKEKIKTARLALTDVTPAELMIEEATNGNPWAPTTVTLRSISKAAFELDDYRRIIEILHKRLAKFEKKNWRASYNSLIVLEHLLTHGPESVAEEFQSDKDVIDQLKGFQYIDQNGFNWGLTVRKKSERVMKLLEEGNLLKEERNQCRRLSRGIQGFGSFTQRSTPTQAILREKSLPTTFGRCNSDSNNYEDQENNSSFSTLGNMKTMIYKDDDIGNNQLLQKSESSSKENMEPSREAWNLDGESESLLDCGEDDSSRLGRFKIEDDHPFNSTTEMNSTASLLSARDGILQGC*