AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1142390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1142390 MtrunA17_Chr7g0223231 92.571 350 26 0 1 350 1 350 0.0 677
Msa1142390 MtrunA17_Chr7g0223241 86.571 350 47 0 1 350 1 350 0.0 633
Msa1142390 MtrunA17_Chr4g0046531 63.842 354 122 2 1 348 363 716 8.75e-163 472
Msa1142390 MtrunA17_Chr4g0046531 62.890 353 125 2 1 347 1 353 1.28e-162 471
Msa1142390 MtrunA17_Chr1g0188391 54.494 356 150 5 3 347 4 358 1.32e-138 397
Msa1142390 MtrunA17_Chr7g0219141 52.542 354 160 3 2 348 3 355 8.83e-132 380
Msa1142390 MtrunA17_Chr7g0219161 53.936 343 150 3 3 338 4 345 3.75e-131 379
Msa1142390 MtrunA17_Chr1g0188371 49.853 339 161 4 1 330 2 340 1.01e-116 343
Msa1142390 MtrunA17_Chr4g0046361 46.610 354 179 4 5 348 6 359 1.71e-112 331
Msa1142390 MtrunA17_Chr4g0014641 48.603 358 172 4 3 348 4 361 4.82e-112 330
Msa1142390 MtrunA17_Chr5g0432301 45.810 358 184 5 1 348 1 358 2.57e-111 328
Msa1142390 MtrunA17_Chr4g0014561 47.765 358 175 4 3 348 4 361 2.08e-110 326
Msa1142390 MtrunA17_Chr5g0432251 45.938 357 184 5 1 348 1 357 4.55e-110 325
Msa1142390 MtrunA17_Chr4g0046341 49.304 359 169 5 3 348 4 362 1.49e-109 324
Msa1142390 MtrunA17_Chr4g0014681 47.486 358 176 4 3 348 4 361 1.68e-109 324
Msa1142390 MtrunA17_Chr4g0040621 44.915 354 188 3 1 348 15 367 9.09e-108 320
Msa1142390 MtrunA17_Chr5g0432241 45.014 351 185 4 6 348 8 358 3.43e-107 318
Msa1142390 MtrunA17_Chr4g0014661 48.718 351 172 4 5 348 6 355 3.46e-105 312
Msa1142390 MtrunA17_Chr4g0014591 48.148 351 174 4 5 348 6 355 6.07e-98 294
Msa1142390 MtrunA17_Chr5g0432261 41.593 339 174 2 12 348 9 325 5.32e-94 283
Msa1142390 MtrunA17_Chr5g0432211 41.908 346 183 5 9 348 10 343 9.23e-94 283
Msa1142390 MtrunA17_Chr3g0121301 37.463 339 199 7 19 349 27 360 1.61e-73 231
Msa1142390 MtrunA17_Chr4g0014601 44.922 256 133 4 5 253 6 260 3.99e-71 222
Msa1142390 MtrunA17_Chr4g0022021 34.503 342 212 7 15 347 27 365 4.73e-58 192
Msa1142390 MtrunA17_Chr4g0021981 33.918 342 214 7 15 347 27 365 2.84e-57 190
Msa1142390 MtrunA17_Chr7g0219171 60.305 131 51 1 218 348 117 246 5.79e-50 167
Msa1142390 MtrunA17_Chr7g0219171 50.435 115 55 1 3 117 4 116 1.24e-31 119
Msa1142390 MtrunA17_Chr3g0128011 32.295 353 218 12 1 336 55 403 1.72e-44 157
Msa1142390 MtrunA17_Chr5g0448091 32.399 321 201 7 29 336 32 349 6.16e-44 155
Msa1142390 MtrunA17_Chr7g0218301 28.909 339 216 8 29 345 38 373 3.58e-41 148
Msa1142390 MtrunA17_Chr7g0218261 27.327 333 223 7 29 345 37 366 6.49e-41 147
Msa1142390 MtrunA17_Chr7g0218271 28.319 339 218 7 29 345 38 373 6.90e-41 147
Msa1142390 MtrunA17_Chr1g0200491 30.183 328 201 8 29 336 38 357 9.24e-41 147
Msa1142390 MtrunA17_Chr1g0163611 28.909 339 201 6 24 336 30 354 1.56e-40 146
Msa1142390 MtrunA17_Chr1g0163621 29.499 339 199 6 24 336 44 368 1.70e-40 146
Msa1142390 MtrunA17_Chr8g0367441 26.935 323 217 7 25 332 41 359 1.25e-38 141
Msa1142390 MtrunA17_Chr1g0163601 28.736 348 206 7 17 336 21 354 1.27e-38 141
Msa1142390 MtrunA17_Chr7g0218131 27.246 334 223 7 29 345 38 368 1.61e-38 140
Msa1142390 MtrunA17_Chr7g0276401 29.412 323 212 7 25 335 42 360 6.56e-38 139
Msa1142390 MtrunA17_Chr8g0367501 27.221 349 230 8 11 338 10 355 9.20e-38 139
Msa1142390 MtrunA17_Chr7g0218211 27.848 316 212 6 29 331 37 349 1.12e-37 138
Msa1142390 MtrunA17_Chr8g0367491 26.791 321 218 6 25 331 40 357 2.79e-37 137
Msa1142390 MtrunA17_Chr7g0218181 27.358 318 208 10 29 331 38 347 4.02e-37 137
Msa1142390 MtrunA17_Chr7g0276411 27.299 348 221 10 4 331 8 343 1.02e-35 133
Msa1142390 MtrunA17_Chr8g0345851 30.830 253 151 6 92 331 30 271 6.25e-35 129
Msa1142390 MtrunA17_Chr2g0307521 27.019 322 214 9 29 335 32 347 2.43e-34 129
Msa1142390 MtrunA17_Chr3g0085201 28.135 327 216 8 32 345 30 350 1.21e-33 127
Msa1142390 MtrunA17_Chr8g0367451 26.791 321 218 6 25 331 40 357 6.48e-33 125
Msa1142390 MtrunA17_Chr3g0085211 26.498 317 217 7 32 336 43 355 8.80e-33 125
Msa1142390 MtrunA17_Chr8g0367381 27.119 295 186 5 25 309 41 316 1.98e-32 123
Msa1142390 MtrunA17_Chr3g0130061 29.155 343 205 11 29 348 29 356 2.01e-32 124
Msa1142390 MtrunA17_Chr3g0130011 28.994 338 212 12 29 348 29 356 1.26e-31 122
Msa1142390 MtrunA17_Chr2g0314271 27.778 342 212 11 29 349 26 353 2.22e-30 118
Msa1142390 MtrunA17_Chr4g0014611 58.163 98 41 0 251 348 8 105 3.56e-23 92.8
Msa1142390 MtrunA17_Chr6g0482291 32.692 156 91 5 178 331 14 157 1.05e-18 82.8
Msa1142390 MtrunA17_Chr8g0367401 39.362 94 57 0 157 250 17 110 6.42e-18 79.3
Msa1142390 MtrunA17_Chr4g0014671 54.128 109 50 0 240 348 24 132 1.03e-17 78.6
Msa1142390 MtrunA17_Chr8g0367461 37.500 96 56 2 237 331 1 93 4.56e-17 76.3
Msa1142390 MtrunA17_Chr1g0170941 50.000 66 33 0 183 248 11 76 1.01e-15 71.2
Msa1142390 MtrunA17_Chr4g0011691 45.679 81 40 3 252 331 140 217 2.48e-13 68.9
Msa1142390 MtrunA17_Chr4g0011691 32.031 128 65 4 14 136 22 132 6.01e-11 62.0
Msa1142390 MtrunA17_Chr8g0367421 30.189 106 57 1 145 250 5 93 8.85e-12 62.0
Msa1142390 MtrunA17_Chr4g0014621 56.250 64 28 0 285 348 197 260 4.72e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1142390 AT4G35150.1 35.735 347 171 10 14 346 12 320 1.12e-57 190
Msa1142390 AT4G35160.1 36.490 359 195 13 14 346 26 377 3.41e-53 180
Msa1142390 AT5G54160.1 32.530 332 207 9 29 348 33 359 1.03e-48 168
Msa1142390 AT1G51990.2 32.857 280 162 8 85 348 91 360 2.59e-40 145
Msa1142390 AT1G51990.1 30.523 344 203 12 29 348 29 360 2.91e-40 145
Msa1142390 AT3G53140.1 30.233 344 204 11 29 348 26 357 3.09e-35 132
Msa1142390 AT1G33030.1 29.430 316 206 8 29 331 20 331 5.18e-35 131
Msa1142390 AT1G77520.1 25.581 344 225 10 29 348 43 379 2.66e-31 122
Msa1142390 AT1G63140.2 28.125 352 218 11 23 348 37 379 9.38e-29 115
Msa1142390 AT1G63140.4 28.125 352 218 11 23 348 57 399 1.48e-28 114
Msa1142390 AT5G53810.1 30.058 346 208 12 29 348 39 376 2.24e-28 114
Msa1142390 AT1G62900.1 33.171 205 130 5 147 348 3 203 7.92e-27 105
Msa1142390 AT1G77530.1 27.746 346 215 11 29 348 43 379 1.10e-24 103
Msa1142390 AT5G37170.2 32.597 181 110 6 157 331 41 215 3.80e-22 94.0
Msa1142390 AT5G37170.1 32.597 181 110 6 157 331 141 315 5.67e-22 95.5
Msa1142390 AT1G21130.1 26.748 329 202 12 29 331 39 354 1.30e-21 95.1
Msa1142390 AT1G21100.1 27.356 329 200 13 29 331 39 354 1.91e-20 91.7
Msa1142390 AT1G76790.1 27.879 330 199 13 29 331 29 346 4.14e-20 90.5
Msa1142390 AT5G37170.3 32.749 171 104 6 167 331 2 167 6.20e-20 86.7
Msa1142390 AT1G21110.1 25.610 328 207 11 29 331 39 354 1.30e-19 89.4
Msa1142390 AT1G21120.1 25.305 328 211 10 29 334 39 354 1.28e-18 86.3
Msa1142390 AT1G21120.2 25.305 328 211 10 29 334 87 402 1.96e-18 86.3
Msa1142390 AT1G33030.2 26.496 234 159 6 29 250 20 252 2.93e-15 75.1
Msa1142390 AT1G33030.3 26.496 234 159 6 29 250 20 252 5.34e-15 74.7
Msa1142390 AT1G63140.1 26.531 245 152 6 29 250 63 302 2.03e-11 64.7

Find 56 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTTCATGCAACAAAATT+TGG 0.164531 7_4:-16692353 Msa1142390:CDS
TACAAAATATTTCCTATATT+TGG 0.180034 7_4:-16691339 Msa1142390:CDS
TAATAGGTTCGCCATGATTT+TGG 0.194358 7_4:+16692665 None:intergenic
TCACAGTGTCATGCGTTTAT+TGG 0.252473 7_4:-16692587 Msa1142390:CDS
ACAAGCTCAGGAAGAGTAAT+AGG 0.291026 7_4:+16692649 None:intergenic
CAATCTTTGAGACTACATTA+TGG 0.292380 7_4:-16692375 Msa1142390:CDS
GTTAATCCTTCTACCACATT+TGG 0.348422 7_4:+16692145 None:intergenic
AATCTTTGAGACTACATTAT+GGG 0.349412 7_4:-16692374 Msa1142390:CDS
TGATCATTGTTTAACTTCAA+TGG 0.378501 7_4:-16692473 Msa1142390:CDS
AATATTATCAATTGAGCAAA+TGG 0.394667 7_4:-16692417 Msa1142390:CDS
TTTAACTTCAATGGTTAAGA+TGG 0.403378 7_4:-16692464 Msa1142390:CDS
TTAACTTCTTTGGTTGATGT+TGG 0.411610 7_4:-16692241 Msa1142390:CDS
ACTTCTTTGGTTGATGTTGG+AGG 0.420904 7_4:-16692238 Msa1142390:CDS
GACCTTCCAAATGTGGTAGA+AGG 0.429597 7_4:-16692151 Msa1142390:CDS
ATTGTAAAGAAGCTGCTTCA+AGG 0.431595 7_4:-16691539 Msa1142390:CDS
AGTGACCTAAAACCAAATAT+AGG 0.433185 7_4:+16691327 None:intergenic
TACTCTTCCTGAGCTTGTCT+CGG 0.435364 7_4:-16692644 Msa1142390:CDS
CATGACACTGTGAACACAAC+CGG 0.451299 7_4:+16692597 None:intergenic
AAATGTGGTAGAAGGATTAA+CGG 0.461848 7_4:-16692143 Msa1142390:CDS
AGACATTGTGATAAATGAAA+AGG 0.464272 7_4:-16691487 Msa1142390:CDS
ATCAAGTGGGCTGTTGAACT+TGG 0.469328 7_4:-16692703 Msa1142390:CDS
AATGTGGTAGAAGGATTAAC+GGG 0.469980 7_4:-16692142 Msa1142390:CDS
GTTGATGTTGGAGGTGGAAC+CGG 0.470193 7_4:-16692229 Msa1142390:CDS
TAATATTTATCAACCATGGT+AGG 0.470597 7_4:+16692433 None:intergenic
AAGAAAATCATAACAGAAGC+AGG 0.478707 7_4:-16691372 Msa1142390:CDS
GTAAAATTGCATCAGCTTGA+GGG 0.481886 7_4:+16692074 None:intergenic
CATCAAAGCTTCTTGTGAAA+GGG 0.492312 7_4:-16692498 Msa1142390:CDS
AGTAAAATTGCATCAGCTTG+AGG 0.494453 7_4:+16692073 None:intergenic
TTCACAAGAAGCTTTGATGT+TGG 0.499286 7_4:+16692502 None:intergenic
TCTGAGAATGAGTGCAAAGC+AGG 0.503412 7_4:-16692790 Msa1142390:CDS
AATCTTCGCAATTGTCAAGA+TGG 0.505388 7_4:-16692554 Msa1142390:CDS
CTGCTTTGATATAACTATGA+TGG 0.505550 7_4:-16691433 Msa1142390:CDS
ACATCAAAGCTTCTTGTGAA+AGG 0.510825 7_4:-16692499 Msa1142390:CDS
CACGGTTAAAATTATTTGTG+AGG 0.517597 7_4:-16692203 Msa1142390:CDS
CGAAGAGCCGAGACAAGCTC+AGG 0.517956 7_4:+16692637 None:intergenic
AATATTTATCAACCATGGTA+GGG 0.522593 7_4:+16692434 None:intergenic
CCAGATATAATCCAAAATCA+TGG 0.539133 7_4:-16692676 Msa1142390:CDS
TGAGACCCGCGTCGATCAAG+TGG 0.547754 7_4:-16692717 Msa1142390:CDS
CGAATTCCAGAAGCAAAAGC+CGG 0.553157 7_4:-16692616 Msa1142390:CDS
TCTTTGGTTGATGTTGGAGG+TGG 0.553343 7_4:-16692235 Msa1142390:CDS
ATCCTTCTACCACATTTGGA+AGG 0.561989 7_4:+16692149 None:intergenic
AATTGCATCAGCTTGAGGGA+TGG 0.574477 7_4:+16692078 None:intergenic
TTGATAATATTTATCAACCA+TGG 0.592376 7_4:+16692429 None:intergenic
GAAGCTATTCAATGATGCTA+TGG 0.595485 7_4:-16692323 Msa1142390:CDS
ATTGAGCAAATGGACATCTA+CGG 0.596800 7_4:-16692407 Msa1142390:CDS
AGTGTTCGACCTTCCAAATG+TGG 0.610487 7_4:-16692158 Msa1142390:CDS
TGTCAAGATGGACGACAACA+AGG 0.611834 7_4:-16692542 Msa1142390:CDS
AGAGTGATTCTAATATGATG+AGG 0.631037 7_4:-16692300 Msa1142390:CDS
ACAGCCCACTTGATCGACGC+GGG 0.642324 7_4:+16692712 None:intergenic
GCTTCAAGGCAAAACAAAGG+AGG 0.643659 7_4:-16691525 Msa1142390:CDS
TGGAGGTGGAACCGGAAACA+CGG 0.653524 7_4:-16692221 Msa1142390:CDS
GATGGTAACAAACCCTACCA+TGG 0.661901 7_4:-16692446 Msa1142390:CDS
GCTGCTTCAAGGCAAAACAA+AGG 0.669930 7_4:-16691528 Msa1142390:CDS
GAGACCCGCGTCGATCAAGT+GGG 0.673235 7_4:-16692716 Msa1142390:CDS
GAGCAAATGGACATCTACGG+AGG 0.717467 7_4:-16692404 Msa1142390:CDS
AACAGCCCACTTGATCGACG+CGG 0.727407 7_4:+16692711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTGTTTTTTTTGA+AGG - chr7_4:16692352-16692371 Msa1142390:CDS 10.0%
!!! TTTATTTTGTTTTTTTTGAA+GGG - chr7_4:16692353-16692372 Msa1142390:CDS 10.0%
!!! TTTTATTTTGTTTTTTTTGA+AGG - chr7_4:16692352-16692371 Msa1142390:CDS 10.0%
!!! TTTATTTTGTTTTTTTTGAA+GGG - chr7_4:16692353-16692372 Msa1142390:CDS 10.0%
!! AAAAAAAAACATAGATAAGA+AGG - chr7_4:16692260-16692279 Msa1142390:CDS 15.0%
!! AAAAAAAACATAGATAAGAA+GGG - chr7_4:16692261-16692280 Msa1142390:CDS 15.0%
!! TTAAGCTAATTAATAATGTA+TGG + chr7_4:16692476-16692495 None:intergenic 15.0%
!! TACAAAATATTTCCTATATT+TGG - chr7_4:16692765-16692784 Msa1142390:CDS 15.0%
!! AAAAAAAAACATAGATAAGA+AGG - chr7_4:16692260-16692279 Msa1142390:CDS 15.0%
!! AAAAAAAACATAGATAAGAA+GGG - chr7_4:16692261-16692280 Msa1142390:CDS 15.0%
!! TTAAGCTAATTAATAATGTA+TGG + chr7_4:16692476-16692495 None:intergenic 15.0%
!! TACAAAATATTTCCTATATT+TGG - chr7_4:16692765-16692784 Msa1142390:CDS 15.0%
!!! TTGATAATATTTATCAACCA+TGG + chr7_4:16691678-16691697 None:intergenic 20.0%
!! AATATTATCAATTGAGCAAA+TGG - chr7_4:16691687-16691706 Msa1142390:intron 20.0%
!!! AATAACTATCTAAGTTTTGT+CGG - chr7_4:16691986-16692005 Msa1142390:intron 20.0%
!! AAAAAACTATGATACTATCT+TGG + chr7_4:16692334-16692353 None:intergenic 20.0%
!!! TAACAATACTTTGTTATGTA+TGG + chr7_4:16692451-16692470 None:intergenic 20.0%
!!! TATTTCCTATATTTGGTTTT+AGG - chr7_4:16692772-16692791 Msa1142390:CDS 20.0%
!!! TTGATAATATTTATCAACCA+TGG + chr7_4:16691678-16691697 None:intergenic 20.0%
!! AATATTATCAATTGAGCAAA+TGG - chr7_4:16691687-16691706 Msa1142390:intron 20.0%
!!! AATAACTATCTAAGTTTTGT+CGG - chr7_4:16691986-16692005 Msa1142390:intron 20.0%
!! AAAAAACTATGATACTATCT+TGG + chr7_4:16692334-16692353 None:intergenic 20.0%
!!! TAACAATACTTTGTTATGTA+TGG + chr7_4:16692451-16692470 None:intergenic 20.0%
!!! TATTTCCTATATTTGGTTTT+AGG - chr7_4:16692772-16692791 Msa1142390:CDS 20.0%
!! TGATCATTGTTTAACTTCAA+TGG - chr7_4:16691631-16691650 Msa1142390:intron 25.0%
!! TTTAACTTCAATGGTTAAGA+TGG - chr7_4:16691640-16691659 Msa1142390:intron 25.0%
! AATATTTATCAACCATGGTA+GGG + chr7_4:16691673-16691692 None:intergenic 25.0%
! TAATATTTATCAACCATGGT+AGG + chr7_4:16691674-16691693 None:intergenic 25.0%
!!! AATCTTTGAGACTACATTAT+GGG - chr7_4:16691730-16691749 Msa1142390:intron 25.0%
!!! AATAATTTTAACCGTGTTTC+CGG + chr7_4:16691897-16691916 None:intergenic 25.0%
!!! AACACTATACATTTTAACGT+AGG + chr7_4:16691932-16691951 None:intergenic 25.0%
! AAGGTACGTATTAATTCAAA+GGG - chr7_4:16692055-16692074 Msa1142390:intron 25.0%
! TTAATTCAAAGGGAAATGAA+TGG - chr7_4:16692065-16692084 Msa1142390:intron 25.0%
!! ATGTTTTACACTTTTACTTC+AGG + chr7_4:16692138-16692157 None:intergenic 25.0%
! AGTGTAAAACATAGATAAGA+AGG - chr7_4:16692146-16692165 Msa1142390:CDS 25.0%
! GTGTAAAACATAGATAAGAA+GGG - chr7_4:16692147-16692166 Msa1142390:CDS 25.0%
!!! TTTCCTTTTCATTTTTGTAG+TGG - chr7_4:16692496-16692515 Msa1142390:CDS 25.0%
!!! TTCCTTTTCATTTTTGTAGT+GGG - chr7_4:16692497-16692516 Msa1142390:CDS 25.0%
! AGACATTGTGATAAATGAAA+AGG - chr7_4:16692617-16692636 Msa1142390:CDS 25.0%
!! TGATCATTGTTTAACTTCAA+TGG - chr7_4:16691631-16691650 Msa1142390:intron 25.0%
!! TTTAACTTCAATGGTTAAGA+TGG - chr7_4:16691640-16691659 Msa1142390:intron 25.0%
! AATATTTATCAACCATGGTA+GGG + chr7_4:16691673-16691692 None:intergenic 25.0%
! TAATATTTATCAACCATGGT+AGG + chr7_4:16691674-16691693 None:intergenic 25.0%
!!! AATCTTTGAGACTACATTAT+GGG - chr7_4:16691730-16691749 Msa1142390:intron 25.0%
!!! AATAATTTTAACCGTGTTTC+CGG + chr7_4:16691897-16691916 None:intergenic 25.0%
!!! AACACTATACATTTTAACGT+AGG + chr7_4:16691932-16691951 None:intergenic 25.0%
! AAGGTACGTATTAATTCAAA+GGG - chr7_4:16692055-16692074 Msa1142390:intron 25.0%
! TTAATTCAAAGGGAAATGAA+TGG - chr7_4:16692065-16692084 Msa1142390:intron 25.0%
!! ATGTTTTACACTTTTACTTC+AGG + chr7_4:16692138-16692157 None:intergenic 25.0%
! AGTGTAAAACATAGATAAGA+AGG - chr7_4:16692146-16692165 Msa1142390:CDS 25.0%
! GTGTAAAACATAGATAAGAA+GGG - chr7_4:16692147-16692166 Msa1142390:CDS 25.0%
!!! TTTCCTTTTCATTTTTGTAG+TGG - chr7_4:16692496-16692515 Msa1142390:CDS 25.0%
!!! TTCCTTTTCATTTTTGTAGT+GGG - chr7_4:16692497-16692516 Msa1142390:CDS 25.0%
! AGACATTGTGATAAATGAAA+AGG - chr7_4:16692617-16692636 Msa1142390:CDS 25.0%
! CCATGATTTTGGATTATATC+TGG + chr7_4:16691431-16691450 None:intergenic 30.0%
CCAGATATAATCCAAAATCA+TGG - chr7_4:16691428-16691447 Msa1142390:CDS 30.0%
!! CAATCTTTGAGACTACATTA+TGG - chr7_4:16691729-16691748 Msa1142390:intron 30.0%
GGATTTCATGCAACAAAATT+TGG - chr7_4:16691751-16691770 Msa1142390:intron 30.0%
AGAGTGATTCTAATATGATG+AGG - chr7_4:16691804-16691823 Msa1142390:intron 30.0%
! TGATTGCAAATCAGTTTTTG+AGG - chr7_4:16691838-16691857 Msa1142390:intron 30.0%
! GATTGCAAATCAGTTTTTGA+GGG - chr7_4:16691839-16691858 Msa1142390:intron 30.0%
! TTAACTTCTTTGGTTGATGT+TGG - chr7_4:16691863-16691882 Msa1142390:intron 30.0%
CACGGTTAAAATTATTTGTG+AGG - chr7_4:16691901-16691920 Msa1142390:intron 30.0%
AAATGTGGTAGAAGGATTAA+CGG - chr7_4:16691961-16691980 Msa1142390:intron 30.0%
CAAGGTACGTATTAATTCAA+AGG - chr7_4:16692054-16692073 Msa1142390:intron 30.0%
ATAGATTCGCAATTAGGTAA+AGG + chr7_4:16692102-16692121 None:intergenic 30.0%
CTAATTGCGAATCTATATGT+CGG - chr7_4:16692106-16692125 Msa1142390:CDS 30.0%
TTCTTCCTAAGTTAAGTTCA+CGG + chr7_4:16692176-16692195 None:intergenic 30.0%
TGAACTTAACTTAGGAAGAA+AGG - chr7_4:16692176-16692195 Msa1142390:CDS 30.0%
!!! CTTTTTAAGATGAATACGTG+GGG + chr7_4:16692205-16692224 None:intergenic 30.0%
!!! CCTTTTTAAGATGAATACGT+GGG + chr7_4:16692206-16692225 None:intergenic 30.0%
!!! ACCTTTTTAAGATGAATACG+TGG + chr7_4:16692207-16692226 None:intergenic 30.0%
AACCCACTACAAAAATGAAA+AGG + chr7_4:16692502-16692521 None:intergenic 30.0%
CTGCTTTGATATAACTATGA+TGG - chr7_4:16692671-16692690 Msa1142390:CDS 30.0%
GAGAAAGAGATGAAAAAACA+TGG - chr7_4:16692709-16692728 Msa1142390:CDS 30.0%
AAGAAAATCATAACAGAAGC+AGG - chr7_4:16692732-16692751 Msa1142390:CDS 30.0%
AGTGACCTAAAACCAAATAT+AGG + chr7_4:16692780-16692799 None:intergenic 30.0%
! CCATGATTTTGGATTATATC+TGG + chr7_4:16691431-16691450 None:intergenic 30.0%
CCAGATATAATCCAAAATCA+TGG - chr7_4:16691428-16691447 Msa1142390:CDS 30.0%
!! CAATCTTTGAGACTACATTA+TGG - chr7_4:16691729-16691748 Msa1142390:intron 30.0%
GGATTTCATGCAACAAAATT+TGG - chr7_4:16691751-16691770 Msa1142390:intron 30.0%
AGAGTGATTCTAATATGATG+AGG - chr7_4:16691804-16691823 Msa1142390:intron 30.0%
! TGATTGCAAATCAGTTTTTG+AGG - chr7_4:16691838-16691857 Msa1142390:intron 30.0%
! GATTGCAAATCAGTTTTTGA+GGG - chr7_4:16691839-16691858 Msa1142390:intron 30.0%
! TTAACTTCTTTGGTTGATGT+TGG - chr7_4:16691863-16691882 Msa1142390:intron 30.0%
CACGGTTAAAATTATTTGTG+AGG - chr7_4:16691901-16691920 Msa1142390:intron 30.0%
AAATGTGGTAGAAGGATTAA+CGG - chr7_4:16691961-16691980 Msa1142390:intron 30.0%
CAAGGTACGTATTAATTCAA+AGG - chr7_4:16692054-16692073 Msa1142390:intron 30.0%
ATAGATTCGCAATTAGGTAA+AGG + chr7_4:16692102-16692121 None:intergenic 30.0%
CTAATTGCGAATCTATATGT+CGG - chr7_4:16692106-16692125 Msa1142390:CDS 30.0%
TTCTTCCTAAGTTAAGTTCA+CGG + chr7_4:16692176-16692195 None:intergenic 30.0%
TGAACTTAACTTAGGAAGAA+AGG - chr7_4:16692176-16692195 Msa1142390:CDS 30.0%
!!! CTTTTTAAGATGAATACGTG+GGG + chr7_4:16692205-16692224 None:intergenic 30.0%
!!! CCTTTTTAAGATGAATACGT+GGG + chr7_4:16692206-16692225 None:intergenic 30.0%
!!! ACCTTTTTAAGATGAATACG+TGG + chr7_4:16692207-16692226 None:intergenic 30.0%
AACCCACTACAAAAATGAAA+AGG + chr7_4:16692502-16692521 None:intergenic 30.0%
CTGCTTTGATATAACTATGA+TGG - chr7_4:16692671-16692690 Msa1142390:CDS 30.0%
GAGAAAGAGATGAAAAAACA+TGG - chr7_4:16692709-16692728 Msa1142390:CDS 30.0%
AAGAAAATCATAACAGAAGC+AGG - chr7_4:16692732-16692751 Msa1142390:CDS 30.0%
AGTGACCTAAAACCAAATAT+AGG + chr7_4:16692780-16692799 None:intergenic 30.0%
! TAATAGGTTCGCCATGATTT+TGG + chr7_4:16691442-16691461 None:intergenic 35.0%
AATCTTCGCAATTGTCAAGA+TGG - chr7_4:16691550-16691569 Msa1142390:CDS 35.0%
! TTCACAAGAAGCTTTGATGT+TGG + chr7_4:16691605-16691624 None:intergenic 35.0%
ACATCAAAGCTTCTTGTGAA+AGG - chr7_4:16691605-16691624 Msa1142390:intron 35.0%
CATCAAAGCTTCTTGTGAAA+GGG - chr7_4:16691606-16691625 Msa1142390:intron 35.0%
ATTGAGCAAATGGACATCTA+CGG - chr7_4:16691697-16691716 Msa1142390:intron 35.0%
GAAGCTATTCAATGATGCTA+TGG - chr7_4:16691781-16691800 Msa1142390:intron 35.0%
!! TTTTGAGGGCTTAACTTCTT+TGG - chr7_4:16691853-16691872 Msa1142390:intron 35.0%
GTTAATCCTTCTACCACATT+TGG + chr7_4:16691962-16691981 None:intergenic 35.0%
AATGTGGTAGAAGGATTAAC+GGG - chr7_4:16691962-16691981 Msa1142390:intron 35.0%
!! AACTATCTAAGTTTTGTCGG+CGG - chr7_4:16691989-16692008 Msa1142390:intron 35.0%
GTAAAATTGCATCAGCTTGA+GGG + chr7_4:16692033-16692052 None:intergenic 35.0%
AGTAAAATTGCATCAGCTTG+AGG + chr7_4:16692034-16692053 None:intergenic 35.0%
! AGCTGATGCAATTTTACTCA+AGG - chr7_4:16692036-16692055 Msa1142390:intron 35.0%
CGACATATAGATTCGCAATT+AGG + chr7_4:16692108-16692127 None:intergenic 35.0%
TCTTCCTAAGTTAAGTTCAC+GGG + chr7_4:16692175-16692194 None:intergenic 35.0%
CCCACGTATTCATCTTAAAA+AGG - chr7_4:16692203-16692222 Msa1142390:CDS 35.0%
!!! TTGCTTTTTAAGTAGCCCAA+CGG + chr7_4:16692240-16692259 None:intergenic 35.0%
ATTGTAAAGAAGCTGCTTCA+AGG - chr7_4:16692565-16692584 Msa1142390:CDS 35.0%
! TAATAGGTTCGCCATGATTT+TGG + chr7_4:16691442-16691461 None:intergenic 35.0%
AATCTTCGCAATTGTCAAGA+TGG - chr7_4:16691550-16691569 Msa1142390:CDS 35.0%
! TTCACAAGAAGCTTTGATGT+TGG + chr7_4:16691605-16691624 None:intergenic 35.0%
ACATCAAAGCTTCTTGTGAA+AGG - chr7_4:16691605-16691624 Msa1142390:intron 35.0%
CATCAAAGCTTCTTGTGAAA+GGG - chr7_4:16691606-16691625 Msa1142390:intron 35.0%
ATTGAGCAAATGGACATCTA+CGG - chr7_4:16691697-16691716 Msa1142390:intron 35.0%
GAAGCTATTCAATGATGCTA+TGG - chr7_4:16691781-16691800 Msa1142390:intron 35.0%
!! TTTTGAGGGCTTAACTTCTT+TGG - chr7_4:16691853-16691872 Msa1142390:intron 35.0%
GTTAATCCTTCTACCACATT+TGG + chr7_4:16691962-16691981 None:intergenic 35.0%
AATGTGGTAGAAGGATTAAC+GGG - chr7_4:16691962-16691981 Msa1142390:intron 35.0%
!! AACTATCTAAGTTTTGTCGG+CGG - chr7_4:16691989-16692008 Msa1142390:intron 35.0%
GTAAAATTGCATCAGCTTGA+GGG + chr7_4:16692033-16692052 None:intergenic 35.0%
AGTAAAATTGCATCAGCTTG+AGG + chr7_4:16692034-16692053 None:intergenic 35.0%
! AGCTGATGCAATTTTACTCA+AGG - chr7_4:16692036-16692055 Msa1142390:intron 35.0%
CGACATATAGATTCGCAATT+AGG + chr7_4:16692108-16692127 None:intergenic 35.0%
TCTTCCTAAGTTAAGTTCAC+GGG + chr7_4:16692175-16692194 None:intergenic 35.0%
CCCACGTATTCATCTTAAAA+AGG - chr7_4:16692203-16692222 Msa1142390:CDS 35.0%
!!! TTGCTTTTTAAGTAGCCCAA+CGG + chr7_4:16692240-16692259 None:intergenic 35.0%
ATTGTAAAGAAGCTGCTTCA+AGG - chr7_4:16692565-16692584 Msa1142390:CDS 35.0%
ACAAGCTCAGGAAGAGTAAT+AGG + chr7_4:16691458-16691477 None:intergenic 40.0%
TCACAGTGTCATGCGTTTAT+TGG - chr7_4:16691517-16691536 Msa1142390:CDS 40.0%
! ACTTCTTTGGTTGATGTTGG+AGG - chr7_4:16691866-16691885 Msa1142390:intron 40.0%
ATCCTTCTACCACATTTGGA+AGG + chr7_4:16691958-16691977 None:intergenic 40.0%
!! AAAGGTGAATTTCTAGCCGT+TGG - chr7_4:16692221-16692240 Msa1142390:CDS 40.0%
!! AAGGTGAATTTCTAGCCGTT+GGG - chr7_4:16692222-16692241 Msa1142390:CDS 40.0%
!!! TGTAGTGGGTTTTGCATAAC+TGG - chr7_4:16692511-16692530 Msa1142390:CDS 40.0%
ACAAGCTCAGGAAGAGTAAT+AGG + chr7_4:16691458-16691477 None:intergenic 40.0%
TCACAGTGTCATGCGTTTAT+TGG - chr7_4:16691517-16691536 Msa1142390:CDS 40.0%
! ACTTCTTTGGTTGATGTTGG+AGG - chr7_4:16691866-16691885 Msa1142390:intron 40.0%
ATCCTTCTACCACATTTGGA+AGG + chr7_4:16691958-16691977 None:intergenic 40.0%
!! AAAGGTGAATTTCTAGCCGT+TGG - chr7_4:16692221-16692240 Msa1142390:CDS 40.0%
!! AAGGTGAATTTCTAGCCGTT+GGG - chr7_4:16692222-16692241 Msa1142390:CDS 40.0%
!!! TGTAGTGGGTTTTGCATAAC+TGG - chr7_4:16692511-16692530 Msa1142390:CDS 40.0%
TCTGAGAATGAGTGCAAAGC+AGG - chr7_4:16691314-16691333 Msa1142390:CDS 45.0%
!! ATCAAGTGGGCTGTTGAACT+TGG - chr7_4:16691401-16691420 Msa1142390:CDS 45.0%
TACTCTTCCTGAGCTTGTCT+CGG - chr7_4:16691460-16691479 Msa1142390:CDS 45.0%
CGAATTCCAGAAGCAAAAGC+CGG - chr7_4:16691488-16691507 Msa1142390:CDS 45.0%
CATGACACTGTGAACACAAC+CGG + chr7_4:16691510-16691529 None:intergenic 45.0%
TGTCAAGATGGACGACAACA+AGG - chr7_4:16691562-16691581 Msa1142390:CDS 45.0%
GATGGTAACAAACCCTACCA+TGG - chr7_4:16691658-16691677 Msa1142390:intron 45.0%
! TCTTTGGTTGATGTTGGAGG+TGG - chr7_4:16691869-16691888 Msa1142390:intron 45.0%
AGTGTTCGACCTTCCAAATG+TGG - chr7_4:16691946-16691965 Msa1142390:intron 45.0%
GACCTTCCAAATGTGGTAGA+AGG - chr7_4:16691953-16691972 Msa1142390:intron 45.0%
AATTGCATCAGCTTGAGGGA+TGG + chr7_4:16692029-16692048 None:intergenic 45.0%
GGTACCCGTGAACTTAACTT+AGG - chr7_4:16692168-16692187 Msa1142390:CDS 45.0%
GCTGCTTCAAGGCAAAACAA+AGG - chr7_4:16692576-16692595 Msa1142390:CDS 45.0%
GCTTCAAGGCAAAACAAAGG+AGG - chr7_4:16692579-16692598 Msa1142390:CDS 45.0%
TCTGAGAATGAGTGCAAAGC+AGG - chr7_4:16691314-16691333 Msa1142390:CDS 45.0%
!! ATCAAGTGGGCTGTTGAACT+TGG - chr7_4:16691401-16691420 Msa1142390:CDS 45.0%
TACTCTTCCTGAGCTTGTCT+CGG - chr7_4:16691460-16691479 Msa1142390:CDS 45.0%
CGAATTCCAGAAGCAAAAGC+CGG - chr7_4:16691488-16691507 Msa1142390:CDS 45.0%
CATGACACTGTGAACACAAC+CGG + chr7_4:16691510-16691529 None:intergenic 45.0%
TGTCAAGATGGACGACAACA+AGG - chr7_4:16691562-16691581 Msa1142390:CDS 45.0%
GATGGTAACAAACCCTACCA+TGG - chr7_4:16691658-16691677 Msa1142390:intron 45.0%
! TCTTTGGTTGATGTTGGAGG+TGG - chr7_4:16691869-16691888 Msa1142390:intron 45.0%
AGTGTTCGACCTTCCAAATG+TGG - chr7_4:16691946-16691965 Msa1142390:intron 45.0%
GACCTTCCAAATGTGGTAGA+AGG - chr7_4:16691953-16691972 Msa1142390:intron 45.0%
AATTGCATCAGCTTGAGGGA+TGG + chr7_4:16692029-16692048 None:intergenic 45.0%
GGTACCCGTGAACTTAACTT+AGG - chr7_4:16692168-16692187 Msa1142390:CDS 45.0%
GCTGCTTCAAGGCAAAACAA+AGG - chr7_4:16692576-16692595 Msa1142390:CDS 45.0%
GCTTCAAGGCAAAACAAAGG+AGG - chr7_4:16692579-16692598 Msa1142390:CDS 45.0%
!! ACACAACCGGCTTTTGCTTC+TGG + chr7_4:16691497-16691516 None:intergenic 50.0%
GAGCAAATGGACATCTACGG+AGG - chr7_4:16691700-16691719 Msa1142390:intron 50.0%
GTTGATGTTGGAGGTGGAAC+CGG - chr7_4:16691875-16691894 Msa1142390:intron 50.0%
!! ACACAACCGGCTTTTGCTTC+TGG + chr7_4:16691497-16691516 None:intergenic 50.0%
GAGCAAATGGACATCTACGG+AGG - chr7_4:16691700-16691719 Msa1142390:intron 50.0%
GTTGATGTTGGAGGTGGAAC+CGG - chr7_4:16691875-16691894 Msa1142390:intron 50.0%
AACAGCCCACTTGATCGACG+CGG + chr7_4:16691396-16691415 None:intergenic 55.0%
TGGAGGTGGAACCGGAAACA+CGG - chr7_4:16691883-16691902 Msa1142390:intron 55.0%
AACAGCCCACTTGATCGACG+CGG + chr7_4:16691396-16691415 None:intergenic 55.0%
TGGAGGTGGAACCGGAAACA+CGG - chr7_4:16691883-16691902 Msa1142390:intron 55.0%
! TGAGACCCGCGTCGATCAAG+TGG - chr7_4:16691387-16691406 Msa1142390:CDS 60.0%
! GAGACCCGCGTCGATCAAGT+GGG - chr7_4:16691388-16691407 Msa1142390:CDS 60.0%
ACAGCCCACTTGATCGACGC+GGG + chr7_4:16691395-16691414 None:intergenic 60.0%
CGAAGAGCCGAGACAAGCTC+AGG + chr7_4:16691470-16691489 None:intergenic 60.0%
! TGAGACCCGCGTCGATCAAG+TGG - chr7_4:16691387-16691406 Msa1142390:CDS 60.0%
! GAGACCCGCGTCGATCAAGT+GGG - chr7_4:16691388-16691407 Msa1142390:CDS 60.0%
ACAGCCCACTTGATCGACGC+GGG + chr7_4:16691395-16691414 None:intergenic 60.0%
CGAAGAGCCGAGACAAGCTC+AGG + chr7_4:16691470-16691489 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 16691308 16692818 16691308 ID=Msa1142390;Name=Msa1142390
chr7_4 mRNA 16691308 16692818 16691308 ID=Msa1142390-mRNA-1;Parent=Msa1142390;Name=Msa1142390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|350
chr7_4 exon 16692069 16692818 16692069 ID=Msa1142390-mRNA-1:exon:3774;Parent=Msa1142390-mRNA-1
chr7_4 exon 16691308 16691610 16691308 ID=Msa1142390-mRNA-1:exon:3773;Parent=Msa1142390-mRNA-1
chr7_4 CDS 16692069 16692818 16692069 ID=Msa1142390-mRNA-1:cds;Parent=Msa1142390-mRNA-1
chr7_4 CDS 16691308 16691610 16691308 ID=Msa1142390-mRNA-1:cds;Parent=Msa1142390-mRNA-1
Gene Sequence

>Msa1142390

ATGGGTTCTGAGAATGAGTGCAAAGCAGGTGAGCTCTTTGAAGCTCAAGCTCACTTGTACAATCAGTTATTCAGTTTCATGAGACCCGCGTCGATCAAGTGGGCTGTTGAACTTGGCATACCAGATATAATCCAAAATCATGGCGAACCTATTACTCTTCCTGAGCTTGTCTCGGCTCTTCGAATTCCAGAAGCAAAAGCCGGTTGTGTTCACAGTGTCATGCGTTTATTGGCGCACAATAAAATCTTCGCAATTGTCAAGATGGACGACAACAAGGAAGCATATGCTCTTTCTCCAACATCAAAGCTTCTTGTGAAAGGGACTGATCATTGTTTAACTTCAATGGTTAAGATGGTAACAAACCCTACCATGGTTGATAAATATTATCAATTGAGCAAATGGACATCTACGGAGGATCTCACAATCTTTGAGACTACATTATGGGATTTCATGCAACAAAATTTGGCTTATGCGAAGCTATTCAATGATGCTATGGAGAGTGATTCTAATATGATGAGGTTTGCAATGAGTGATTGCAAATCAGTTTTTGAGGGCTTAACTTCTTTGGTTGATGTTGGAGGTGGAACCGGAAACACGGTTAAAATTATTTGTGAGGCGTTTCCTACGTTAAAATGTATAGTGTTCGACCTTCCAAATGTGGTAGAAGGATTAACGGGAAATAACTATCTAAGTTTTGTCGGCGGAGATATGTTTGAATCCATCCCTCAAGCTGATGCAATTTTACTCAAGTGGGTTTTGCATAACTGGAATGATGATGAATGTGTAAAGATACTTAAAAATTGTAAAGAAGCTGCTTCAAGGCAAAACAAAGGAGGAAAAGTGATCATAATAGACATTGTGATAAATGAAAAGGTAGATGAGCATGAAGTAACAGAAGTCAAACTCTGCTTTGATATAACTATGATGGCTAATCACAATTCAAGAGAAAGAGATGAAAAAACATGGAAGAAAATCATAACAGAAGCAGGATTCATGTGTTACAAAATATTTCCTATATTTGGTTTTAGGTCACTTATTGAACTTTCTGTTTAA

Protein sequence

>Msa1142390

MGSENECKAGELFEAQAHLYNQLFSFMRPASIKWAVELGIPDIIQNHGEPITLPELVSALRIPEAKAGCVHSVMRLLAHNKIFAIVKMDDNKEAYALSPTSKLLVKGTDHCLTSMVKMVTNPTMVDKYYQLSKWTSTEDLTIFETTLWDFMQQNLAYAKLFNDAMESDSNMMRFAMSDCKSVFEGLTSLVDVGGGTGNTVKIICEAFPTLKCIVFDLPNVVEGLTGNNYLSFVGGDMFESIPQADAILLKWVLHNWNDDECVKILKNCKEAASRQNKGGKVIIIDIVINEKVDEHEVTEVKLCFDITMMANHNSRERDEKTWKKIITEAGFMCYKIFPIFGFRSLIELSV*