AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0914710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0914710 MtrunA17_Chr1g0155221 87.440 207 4 1 1 185 1 207 5.80e-121 350
Msa0914710 MtrunA17_Chr8g0373181 70.244 205 38 2 3 185 2 205 3.67e-92 277
Msa0914710 MtrunA17_Chr5g0404191 65.385 208 49 2 1 185 1 208 2.84e-90 266
Msa0914710 MtrunA17_Chr8g0373191 55.000 180 71 3 9 185 5 177 3.90e-55 181
Msa0914710 MtrunA17_Chr4g0066581 39.901 203 94 4 6 185 13 210 4.19e-39 139
Msa0914710 MtrunA17_Chr2g0286721 38.974 195 89 3 14 185 20 207 2.62e-37 134
Msa0914710 MtrunA17_Chr7g0273271 40.462 173 76 2 41 186 14 186 2.81e-37 128
Msa0914710 MtrunA17_Chr7g0273281 44.156 154 64 1 54 185 67 220 2.80e-35 129
Msa0914710 MtrunA17_Chr7g0259221 40.909 154 69 1 54 185 47 200 1.06e-31 119
Msa0914710 MtrunA17_Chr7g0259471 33.175 211 99 5 3 185 2 198 2.81e-31 117
Msa0914710 MtrunA17_Chr5g0432581 27.950 161 86 2 51 181 21 181 7.93e-13 65.9
Msa0914710 MtrunA17_Chr4g0039651 27.778 216 107 7 1 181 10 211 1.16e-12 65.5
Msa0914710 MtrunA17_Chr6g0457781 31.410 156 81 3 44 174 100 254 6.68e-12 63.2
Msa0914710 MtrunA17_Chr8g0373531 27.329 161 87 2 51 181 21 181 1.27e-11 62.4
Msa0914710 MtrunA17_Chr4g0032021 32.143 168 80 6 48 181 95 262 3.90e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0914710 AT1G75220.1 69.903 206 38 3 3 185 2 206 7.96e-94 281
Msa0914710 AT1G19450.1 69.565 207 38 4 3 185 2 207 2.02e-91 275
Msa0914710 AT5G18840.1 37.245 196 89 2 12 185 19 202 2.34e-35 129
Msa0914710 AT2G48020.3 40.909 154 69 1 54 185 33 186 3.44e-35 127
Msa0914710 AT2G48020.4 40.909 154 69 1 54 185 33 186 7.14e-35 126
Msa0914710 AT1G08920.3 36.500 200 92 2 8 185 4 190 2.67e-34 126
Msa0914710 AT1G08920.2 36.500 200 92 2 8 185 4 190 3.82e-34 126
Msa0914710 AT1G08920.1 36.500 200 92 2 8 185 4 190 4.08e-34 125
Msa0914710 AT2G48020.2 39.634 164 77 1 44 185 23 186 5.07e-34 125
Msa0914710 AT2G48020.1 39.634 164 77 1 44 185 23 186 5.07e-34 125
Msa0914710 AT3G05150.1 34.783 207 99 2 1 185 1 193 5.43e-34 125
Msa0914710 AT3G05150.3 34.783 207 99 2 1 185 1 193 5.43e-34 125
Msa0914710 AT3G05150.2 34.783 207 99 2 1 185 1 193 8.00e-34 125
Msa0914710 AT1G54730.11 41.611 149 65 1 59 185 42 190 5.23e-32 118
Msa0914710 AT1G54730.10 41.611 149 65 1 59 185 42 190 8.56e-32 117
Msa0914710 AT1G54730.6 41.611 149 65 1 59 185 42 190 8.56e-32 117
Msa0914710 AT1G54730.8 41.611 149 65 1 59 185 42 190 1.78e-31 117
Msa0914710 AT1G54730.9 41.611 149 65 1 59 185 42 190 2.48e-31 117
Msa0914710 AT1G54730.7 41.611 149 65 1 59 185 42 190 2.48e-31 117
Msa0914710 AT1G54730.4 41.611 149 65 1 59 185 42 190 3.94e-31 117
Msa0914710 AT1G54730.5 41.611 149 65 1 59 185 42 190 4.41e-31 117
Msa0914710 AT1G54730.3 41.611 149 65 1 59 185 42 190 5.51e-31 117
Msa0914710 AT1G54730.2 41.611 149 65 1 59 185 42 190 6.15e-31 117
Msa0914710 AT5G27360.4 38.690 168 77 2 44 185 26 193 8.92e-31 116
Msa0914710 AT5G27360.3 38.690 168 77 2 44 185 74 241 2.82e-30 115
Msa0914710 AT5G27360.1 38.690 168 77 2 44 185 26 193 3.70e-30 115
Msa0914710 AT5G27350.1 36.310 168 81 2 44 185 22 189 3.96e-30 115
Msa0914710 AT4G04750.3 40.789 152 68 1 57 186 88 239 9.51e-29 111
Msa0914710 AT4G04750.1 40.789 152 68 1 57 186 44 195 1.03e-28 111
Msa0914710 AT4G04750.2 40.789 152 68 1 57 186 44 195 1.03e-28 111
Msa0914710 AT3G05400.1 36.464 181 93 1 28 186 5 185 1.84e-28 110
Msa0914710 AT3G05165.4 36.686 169 80 3 43 185 21 188 3.77e-28 109
Msa0914710 AT3G05165.5 36.686 169 80 3 43 185 21 188 3.77e-28 109
Msa0914710 AT3G05165.3 33.000 200 97 3 8 185 4 188 6.69e-28 108
Msa0914710 AT3G05165.2 33.000 200 97 3 8 185 4 188 6.69e-28 108
Msa0914710 AT3G05165.1 33.000 200 97 3 8 185 4 188 6.69e-28 108
Msa0914710 AT3G05165.6 36.364 165 83 1 43 185 24 188 6.83e-28 109
Msa0914710 AT4G04760.1 39.735 151 69 1 57 185 39 189 3.64e-27 107
Msa0914710 AT4G04760.2 39.735 151 69 1 57 185 39 189 4.02e-27 107
Msa0914710 AT1G08900.4 35.000 180 94 2 28 184 3 182 4.45e-27 106
Msa0914710 AT1G08900.1 35.000 180 94 2 28 184 3 182 7.05e-27 106
Msa0914710 AT1G08900.2 35.000 180 94 2 28 184 3 182 7.05e-27 106
Msa0914710 AT1G08930.1 35.000 160 82 1 48 185 57 216 7.24e-27 106
Msa0914710 AT1G08930.2 35.000 160 82 1 48 185 57 216 7.24e-27 106
Msa0914710 AT3G20460.1 35.811 148 73 1 59 184 63 210 9.28e-26 103
Msa0914710 AT3G05155.2 37.662 154 74 1 54 185 32 185 1.14e-25 101
Msa0914710 AT1G08890.1 37.349 166 77 2 46 184 19 184 1.85e-25 102
Msa0914710 AT1G08900.5 39.130 138 62 1 69 184 3 140 3.96e-25 100
Msa0914710 AT3G05400.2 37.654 162 97 2 28 186 5 165 4.08e-25 101
Msa0914710 AT3G05160.1 35.758 165 84 1 43 185 15 179 6.77e-25 100
Msa0914710 AT3G05155.1 37.662 154 74 1 54 185 32 185 8.32e-25 100
Msa0914710 AT1G08900.3 37.879 132 60 1 75 184 43 174 1.48e-21 91.3
Msa0914710 AT4G04760.3 39.231 130 57 1 78 185 1 130 3.04e-20 87.4
Msa0914710 AT3G05160.3 37.692 130 59 1 78 185 1 130 5.32e-19 84.0
Msa0914710 AT3G05160.2 37.692 130 59 1 78 185 1 130 5.32e-19 84.0
Msa0914710 AT5G16150.2 33.333 156 78 3 44 174 100 254 9.77e-12 63.2
Msa0914710 AT5G16150.1 33.333 156 78 3 44 174 100 254 9.77e-12 63.2
Msa0914710 AT5G16150.3 33.333 156 78 3 44 174 100 254 9.77e-12 63.2
Msa0914710 AT2G16120.1 25.625 160 90 2 51 181 28 187 6.93e-11 60.8
Msa0914710 AT5G59250.1 30.058 173 87 6 48 186 97 269 9.35e-11 60.5

Find 51 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATCCATTCCAAATATTAT+TGG 0.188259 6_2:-29496024 Msa0914710:CDS
ATCAACCAACCAATAATATT+TGG 0.220729 6_2:+29496015 None:intergenic
TGGTCAAATTGCTGAGTATA+TGG 0.256455 6_2:-29496176 Msa0914710:CDS
AGAAGACAATCAAGTTTGTT+TGG 0.279002 6_2:-29496862 Msa0914710:CDS
ATTGGTTAGTTCTCTTTGTT+TGG 0.303058 6_2:-29496241 Msa0914710:intron
ACTGTAAAACCAAACTGAAT+AGG 0.315422 6_2:+29496772 None:intergenic
TGTGTTCTCATTGTTGCTTT+AGG 0.320426 6_2:-29496796 Msa0914710:CDS
CTGTAAAACCAAACTGAATA+GGG 0.350827 6_2:+29496773 None:intergenic
GAAGACAATCAAGTTTGTTT+GGG 0.351916 6_2:-29496861 Msa0914710:CDS
CAACTTCCTGTGTGTAGAAA+TGG 0.377192 6_2:+29496901 None:intergenic
GCTTTAGGCCCTATTCAGTT+TGG 0.384970 6_2:-29496781 Msa0914710:CDS
TCAAAACTTGAGGGGAAGTC+TGG 0.393694 6_2:-29495565 Msa0914710:CDS
GCATAGCTTTCTGTCACCCT+TGG 0.406922 6_2:-29495423 Msa0914710:intron
CTGAGTATATGGGGCGCAAA+GGG 0.408844 6_2:-29496165 Msa0914710:CDS
ATAGATAGAAGAAAATTCTA+AGG 0.421881 6_2:-29496988 Msa0914710:five_prime_UTR
TGTCACCCTTGGAATTATGC+TGG 0.444198 6_2:-29495412 Msa0914710:CDS
ATTATGCTGGCTTATTTGCT+AGG 0.457545 6_2:-29495399 Msa0914710:CDS
TCAGCTATCATCACTGATCT+TGG 0.464482 6_2:-29496637 Msa0914710:CDS
TTTGTCCAATGTGGGTGCTA+TGG 0.468827 6_2:-29496215 Msa0914710:CDS
AAGAAAATTCTAAGGTAGCT+AGG 0.472491 6_2:-29496980 Msa0914710:five_prime_UTR
GGTCAAATTGCTGAGTATAT+GGG 0.477700 6_2:-29496175 Msa0914710:CDS
GGCAAGAGAATGAAGAAGGA+AGG 0.486773 6_2:-29496936 Msa0914710:CDS
TCCAATGTGGGTGCTATGGT+TGG 0.490584 6_2:-29496211 Msa0914710:CDS
TTTGGTTCTTTGTCCAATGT+GGG 0.502217 6_2:-29496223 Msa0914710:CDS
TTGAGGCAAGAGAATGAAGA+AGG 0.506532 6_2:-29496940 Msa0914710:CDS
CCATTCCAAATATTATTGGT+TGG 0.507232 6_2:-29496020 Msa0914710:CDS
CATTTCTACACACAGGAAGT+TGG 0.511584 6_2:-29496900 Msa0914710:CDS
CCAACCAATAATATTTGGAA+TGG 0.518592 6_2:+29496020 None:intergenic
AATATCACCTCAAAACTTGA+GGG 0.525550 6_2:-29495574 Msa0914710:CDS
AAGTCTGGTTTCAGTTAACC+AGG 0.531940 6_2:-29495550 Msa0914710:intron
GTTTGGTTCTTTGTCCAATG+TGG 0.543832 6_2:-29496224 Msa0914710:CDS
AATCAAGCATGAGTAGTTTG+AGG 0.560140 6_2:-29496957 Msa0914710:exon
AAATATCACCTCAAAACTTG+AGG 0.561059 6_2:-29495575 Msa0914710:CDS
AATAAGCCAGCATAATTCCA+AGG 0.561672 6_2:+29495406 None:intergenic
GCTGAGTATATGGGGCGCAA+AGG 0.568152 6_2:-29496166 Msa0914710:CDS
GGCTATTACCTAAAATTGCA+AGG 0.572544 6_2:+29495355 None:intergenic
TCTTGGCCTCTCAGTTTCTG+AGG 0.574021 6_2:-29496620 Msa0914710:intron
GCAAGAGAATGAAGAAGGAA+GGG 0.590341 6_2:-29496935 Msa0914710:CDS
AACACAAGCAATGACAGAGA+TGG 0.594240 6_2:+29496813 None:intergenic
TGATATTTCGGCTATATACA+CGG 0.595404 6_2:+29495590 None:intergenic
GTCAAATTGCTGAGTATATG+GGG 0.597449 6_2:-29496174 Msa0914710:CDS
GATATTTCGGCTATATACAC+GGG 0.626880 6_2:+29495591 None:intergenic
AAGAAGCCATTTCTACACAC+AGG 0.629747 6_2:-29496907 Msa0914710:CDS
AGAGATGGAAGAGTCACGAA+TGG 0.638945 6_2:+29496828 None:intergenic
TCCAACCATAGCACCCACAT+TGG 0.651519 6_2:+29496210 None:intergenic
ATATCACCTCAAAACTTGAG+GGG 0.657802 6_2:-29495573 Msa0914710:CDS
ATAAGCCAGCATAATTCCAA+GGG 0.660035 6_2:+29495407 None:intergenic
ATGGTTGGAGCAATAGCTAG+TGG 0.660952 6_2:-29496196 Msa0914710:CDS
TGAGTATATGGGGCGCAAAG+GGG 0.676813 6_2:-29496164 Msa0914710:intron
GTGATGATAGCTGATTGTGT+AGG 0.693990 6_2:+29496646 None:intergenic
GTCATACCTCAGAAACTGAG+AGG 0.694724 6_2:+29496614 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAATTACATATGTTT+TGG - chr6_2:29495876-29495895 Msa0914710:intron 10.0%
!! GAAAAAAATATTGAAAATAA+AGG + chr6_2:29496087-29496106 None:intergenic 10.0%
!!! TATTAAAATTACATATGTTT+TGG - chr6_2:29495876-29495895 Msa0914710:intron 10.0%
!! GAAAAAAATATTGAAAATAA+AGG + chr6_2:29496087-29496106 None:intergenic 10.0%
!! AATATTGAAAATAAAGGAAA+TGG + chr6_2:29496081-29496100 None:intergenic 15.0%
!! CATAATAATAAAAACAAATG+AGG + chr6_2:29496115-29496134 None:intergenic 15.0%
!!! GTTTTCAAATTAATTCATAT+AGG - chr6_2:29496764-29496783 Msa0914710:intron 15.0%
!! AGTAATATAAATCTAATTGA+TGG + chr6_2:29496866-29496885 None:intergenic 15.0%
!! AATATTGAAAATAAAGGAAA+TGG + chr6_2:29496081-29496100 None:intergenic 15.0%
!! CATAATAATAAAAACAAATG+AGG + chr6_2:29496115-29496134 None:intergenic 15.0%
!!! GTTTTCAAATTAATTCATAT+AGG - chr6_2:29496764-29496783 Msa0914710:intron 15.0%
!! AGTAATATAAATCTAATTGA+TGG + chr6_2:29496866-29496885 None:intergenic 15.0%
!! ATAGATAGAAGAAAATTCTA+AGG - chr6_2:29495392-29495411 Msa0914710:CDS 20.0%
!! GTATAGTCAAAAACAATATT+AGG + chr6_2:29495911-29495930 None:intergenic 20.0%
!!! TTGTTTTTGACTATACATAT+TGG - chr6_2:29495915-29495934 Msa0914710:intron 20.0%
!!! TAAATGACTTCATATTTTGA+TGG - chr6_2:29496281-29496300 Msa0914710:intron 20.0%
!!! ATGAATTTTGTAATTAGTCT+TGG + chr6_2:29496307-29496326 None:intergenic 20.0%
!!! ATAACATATTTTGCATTTTC+AGG - chr6_2:29496611-29496630 Msa0914710:intron 20.0%
!! ATAGATAGAAGAAAATTCTA+AGG - chr6_2:29495392-29495411 Msa0914710:CDS 20.0%
!! GTATAGTCAAAAACAATATT+AGG + chr6_2:29495911-29495930 None:intergenic 20.0%
!!! TTGTTTTTGACTATACATAT+TGG - chr6_2:29495915-29495934 Msa0914710:intron 20.0%
!!! TAAATGACTTCATATTTTGA+TGG - chr6_2:29496281-29496300 Msa0914710:intron 20.0%
!!! ATGAATTTTGTAATTAGTCT+TGG + chr6_2:29496307-29496326 None:intergenic 20.0%
!!! ATAACATATTTTGCATTTTC+AGG - chr6_2:29496611-29496630 Msa0914710:intron 20.0%
! GAATTATGATCATTTATTGC+AGG - chr6_2:29495697-29495716 Msa0914710:intron 25.0%
! GGTATGACAATTATATATGA+TGG - chr6_2:29495781-29495800 Msa0914710:intron 25.0%
!! TGGTTTGAAAATTTTACACA+AGG - chr6_2:29495935-29495954 Msa0914710:intron 25.0%
! ACCAAAAGTAGATTTAACAT+TGG - chr6_2:29495972-29495991 Msa0914710:intron 25.0%
!! TCCAATGTTAAATCTACTTT+TGG + chr6_2:29495976-29495995 None:intergenic 25.0%
! AAGTAGATTTAACATTGGAT+TGG - chr6_2:29495977-29495996 Msa0914710:intron 25.0%
! AATAAAAACAAATGAGGCTA+TGG + chr6_2:29496109-29496128 None:intergenic 25.0%
! AATGCAAGAAAAGAAGAAAA+CGG + chr6_2:29496246-29496265 None:intergenic 25.0%
! ATCAACCAACCAATAATATT+TGG + chr6_2:29496368-29496387 None:intergenic 25.0%
!! GATTCTTCTTTTCTCTATAT+GGG - chr6_2:29496633-29496652 Msa0914710:CDS 25.0%
! GAATTATGATCATTTATTGC+AGG - chr6_2:29495697-29495716 Msa0914710:intron 25.0%
! GGTATGACAATTATATATGA+TGG - chr6_2:29495781-29495800 Msa0914710:intron 25.0%
!! TGGTTTGAAAATTTTACACA+AGG - chr6_2:29495935-29495954 Msa0914710:intron 25.0%
! ACCAAAAGTAGATTTAACAT+TGG - chr6_2:29495972-29495991 Msa0914710:intron 25.0%
!! TCCAATGTTAAATCTACTTT+TGG + chr6_2:29495976-29495995 None:intergenic 25.0%
! AAGTAGATTTAACATTGGAT+TGG - chr6_2:29495977-29495996 Msa0914710:intron 25.0%
! AATAAAAACAAATGAGGCTA+TGG + chr6_2:29496109-29496128 None:intergenic 25.0%
! AATGCAAGAAAAGAAGAAAA+CGG + chr6_2:29496246-29496265 None:intergenic 25.0%
! ATCAACCAACCAATAATATT+TGG + chr6_2:29496368-29496387 None:intergenic 25.0%
!! GATTCTTCTTTTCTCTATAT+GGG - chr6_2:29496633-29496652 Msa0914710:CDS 25.0%
!! AAGAAAATTCTAAGGTAGCT+AGG - chr6_2:29495400-29495419 Msa0914710:CDS 30.0%
! AGAAGACAATCAAGTTTGTT+TGG - chr6_2:29495518-29495537 Msa0914710:intron 30.0%
! GAAGACAATCAAGTTTGTTT+GGG - chr6_2:29495519-29495538 Msa0914710:intron 30.0%
CTGTAAAACCAAACTGAATA+GGG + chr6_2:29495610-29495629 None:intergenic 30.0%
ACTGTAAAACCAAACTGAAT+AGG + chr6_2:29495611-29495630 None:intergenic 30.0%
GTCAACAAAATCATTTGTGA+TGG + chr6_2:29495839-29495858 None:intergenic 30.0%
! ATTGGTTAGTTCTCTTTGTT+TGG - chr6_2:29496139-29496158 Msa0914710:intron 30.0%
ATGCAAGAAAAGAAGAAAAC+GGG + chr6_2:29496245-29496264 None:intergenic 30.0%
GCATCCATTCCAAATATTAT+TGG - chr6_2:29496356-29496375 Msa0914710:intron 30.0%
CCAACCAATAATATTTGGAA+TGG + chr6_2:29496363-29496382 None:intergenic 30.0%
CCATTCCAAATATTATTGGT+TGG - chr6_2:29496360-29496379 Msa0914710:intron 30.0%
TTCATTTGCAAATGTGAGTT+TGG - chr6_2:29496391-29496410 Msa0914710:intron 30.0%
ATATTAAGAAGACCAAACTC+GGG + chr6_2:29496458-29496477 None:intergenic 30.0%
CATATTAAGAAGACCAAACT+CGG + chr6_2:29496459-29496478 None:intergenic 30.0%
! GGATTCTTCTTTTCTCTATA+TGG - chr6_2:29496632-29496651 Msa0914710:CDS 30.0%
CTAGCAAAAGTGAAAACAAT+TGG + chr6_2:29496709-29496728 None:intergenic 30.0%
TGATATTTCGGCTATATACA+CGG + chr6_2:29496793-29496812 None:intergenic 30.0%
!!! CAAGTTTTGAGGTGATATTT+CGG + chr6_2:29496805-29496824 None:intergenic 30.0%
AAATATCACCTCAAAACTTG+AGG - chr6_2:29496805-29496824 Msa0914710:CDS 30.0%
AATATCACCTCAAAACTTGA+GGG - chr6_2:29496806-29496825 Msa0914710:CDS 30.0%
!! AAGAAAATTCTAAGGTAGCT+AGG - chr6_2:29495400-29495419 Msa0914710:CDS 30.0%
! AGAAGACAATCAAGTTTGTT+TGG - chr6_2:29495518-29495537 Msa0914710:intron 30.0%
! GAAGACAATCAAGTTTGTTT+GGG - chr6_2:29495519-29495538 Msa0914710:intron 30.0%
CTGTAAAACCAAACTGAATA+GGG + chr6_2:29495610-29495629 None:intergenic 30.0%
ACTGTAAAACCAAACTGAAT+AGG + chr6_2:29495611-29495630 None:intergenic 30.0%
GTCAACAAAATCATTTGTGA+TGG + chr6_2:29495839-29495858 None:intergenic 30.0%
! ATTGGTTAGTTCTCTTTGTT+TGG - chr6_2:29496139-29496158 Msa0914710:intron 30.0%
ATGCAAGAAAAGAAGAAAAC+GGG + chr6_2:29496245-29496264 None:intergenic 30.0%
GCATCCATTCCAAATATTAT+TGG - chr6_2:29496356-29496375 Msa0914710:intron 30.0%
CCAACCAATAATATTTGGAA+TGG + chr6_2:29496363-29496382 None:intergenic 30.0%
CCATTCCAAATATTATTGGT+TGG - chr6_2:29496360-29496379 Msa0914710:intron 30.0%
TTCATTTGCAAATGTGAGTT+TGG - chr6_2:29496391-29496410 Msa0914710:intron 30.0%
ATATTAAGAAGACCAAACTC+GGG + chr6_2:29496458-29496477 None:intergenic 30.0%
CATATTAAGAAGACCAAACT+CGG + chr6_2:29496459-29496478 None:intergenic 30.0%
! GGATTCTTCTTTTCTCTATA+TGG - chr6_2:29496632-29496651 Msa0914710:CDS 30.0%
CTAGCAAAAGTGAAAACAAT+TGG + chr6_2:29496709-29496728 None:intergenic 30.0%
TGATATTTCGGCTATATACA+CGG + chr6_2:29496793-29496812 None:intergenic 30.0%
!!! CAAGTTTTGAGGTGATATTT+CGG + chr6_2:29496805-29496824 None:intergenic 30.0%
AAATATCACCTCAAAACTTG+AGG - chr6_2:29496805-29496824 Msa0914710:CDS 30.0%
AATATCACCTCAAAACTTGA+GGG - chr6_2:29496806-29496825 Msa0914710:CDS 30.0%
AATCAAGCATGAGTAGTTTG+AGG - chr6_2:29495423-29495442 Msa0914710:intron 35.0%
!! TGTGTTCTCATTGTTGCTTT+AGG - chr6_2:29495584-29495603 Msa0914710:CDS 35.0%
TATGATCATTTATTGCAGGC+AGG - chr6_2:29495701-29495720 Msa0914710:intron 35.0%
!! TTTGGTTCTTTGTCCAATGT+GGG - chr6_2:29496157-29496176 Msa0914710:intron 35.0%
TGGTCAAATTGCTGAGTATA+TGG - chr6_2:29496204-29496223 Msa0914710:CDS 35.0%
GGTCAAATTGCTGAGTATAT+GGG - chr6_2:29496205-29496224 Msa0914710:CDS 35.0%
GTCAAATTGCTGAGTATATG+GGG - chr6_2:29496206-29496225 Msa0914710:CDS 35.0%
! TAATCATTTTACGACCATCG+TGG + chr6_2:29496568-29496587 None:intergenic 35.0%
! CTTCTTTTCTCTATATGGGA+AGG - chr6_2:29496637-29496656 Msa0914710:CDS 35.0%
CGTCGGAATAATATCTTACA+CGG - chr6_2:29496677-29496696 Msa0914710:intron 35.0%
GATATTTCGGCTATATACAC+GGG + chr6_2:29496792-29496811 None:intergenic 35.0%
ATATCACCTCAAAACTTGAG+GGG - chr6_2:29496807-29496826 Msa0914710:CDS 35.0%
! ATTGATGGTATTTACCAACC+TGG + chr6_2:29496851-29496870 None:intergenic 35.0%
ATAAGCCAGCATAATTCCAA+GGG + chr6_2:29496976-29496995 None:intergenic 35.0%
AATAAGCCAGCATAATTCCA+AGG + chr6_2:29496977-29496996 None:intergenic 35.0%
!! ATTATGCTGGCTTATTTGCT+AGG - chr6_2:29496981-29497000 Msa0914710:five_prime_UTR 35.0%
! TGCTAGGACTTTTTGTTCAA+TGG - chr6_2:29496997-29497016 Msa0914710:five_prime_UTR 35.0%
! TGGAGATTCCTTGCAATTTT+AGG - chr6_2:29497017-29497036 Msa0914710:five_prime_UTR 35.0%
GGCTATTACCTAAAATTGCA+AGG + chr6_2:29497028-29497047 None:intergenic 35.0%
AATCAAGCATGAGTAGTTTG+AGG - chr6_2:29495423-29495442 Msa0914710:intron 35.0%
!! TGTGTTCTCATTGTTGCTTT+AGG - chr6_2:29495584-29495603 Msa0914710:CDS 35.0%
TATGATCATTTATTGCAGGC+AGG - chr6_2:29495701-29495720 Msa0914710:intron 35.0%
!! TTTGGTTCTTTGTCCAATGT+GGG - chr6_2:29496157-29496176 Msa0914710:intron 35.0%
TGGTCAAATTGCTGAGTATA+TGG - chr6_2:29496204-29496223 Msa0914710:CDS 35.0%
GGTCAAATTGCTGAGTATAT+GGG - chr6_2:29496205-29496224 Msa0914710:CDS 35.0%
GTCAAATTGCTGAGTATATG+GGG - chr6_2:29496206-29496225 Msa0914710:CDS 35.0%
! TAATCATTTTACGACCATCG+TGG + chr6_2:29496568-29496587 None:intergenic 35.0%
! CTTCTTTTCTCTATATGGGA+AGG - chr6_2:29496637-29496656 Msa0914710:CDS 35.0%
CGTCGGAATAATATCTTACA+CGG - chr6_2:29496677-29496696 Msa0914710:intron 35.0%
GATATTTCGGCTATATACAC+GGG + chr6_2:29496792-29496811 None:intergenic 35.0%
ATATCACCTCAAAACTTGAG+GGG - chr6_2:29496807-29496826 Msa0914710:CDS 35.0%
! ATTGATGGTATTTACCAACC+TGG + chr6_2:29496851-29496870 None:intergenic 35.0%
ATAAGCCAGCATAATTCCAA+GGG + chr6_2:29496976-29496995 None:intergenic 35.0%
AATAAGCCAGCATAATTCCA+AGG + chr6_2:29496977-29496996 None:intergenic 35.0%
!! ATTATGCTGGCTTATTTGCT+AGG - chr6_2:29496981-29497000 Msa0914710:five_prime_UTR 35.0%
! TGCTAGGACTTTTTGTTCAA+TGG - chr6_2:29496997-29497016 Msa0914710:five_prime_UTR 35.0%
! TGGAGATTCCTTGCAATTTT+AGG - chr6_2:29497017-29497036 Msa0914710:five_prime_UTR 35.0%
GGCTATTACCTAAAATTGCA+AGG + chr6_2:29497028-29497047 None:intergenic 35.0%
TTGAGGCAAGAGAATGAAGA+AGG - chr6_2:29495440-29495459 Msa0914710:intron 40.0%
GCAAGAGAATGAAGAAGGAA+GGG - chr6_2:29495445-29495464 Msa0914710:intron 40.0%
AAGAAGCCATTTCTACACAC+AGG - chr6_2:29495473-29495492 Msa0914710:intron 40.0%
CAACTTCCTGTGTGTAGAAA+TGG + chr6_2:29495482-29495501 None:intergenic 40.0%
CATTTCTACACACAGGAAGT+TGG - chr6_2:29495480-29495499 Msa0914710:intron 40.0%
AACACAAGCAATGACAGAGA+TGG + chr6_2:29495570-29495589 None:intergenic 40.0%
GTGATGATAGCTGATTGTGT+AGG + chr6_2:29495737-29495756 None:intergenic 40.0%
TCAGCTATCATCACTGATCT+TGG - chr6_2:29495743-29495762 Msa0914710:intron 40.0%
!! GTTTGGTTCTTTGTCCAATG+TGG - chr6_2:29496156-29496175 Msa0914710:intron 40.0%
!!! AGTTCTTGTTTTCCCGAGTT+TGG - chr6_2:29496443-29496462 Msa0914710:intron 40.0%
AGTTTGACCTTGTAACCTCA+AGG - chr6_2:29496522-29496541 Msa0914710:intron 40.0%
GTTTGACCTTGTAACCTCAA+GGG - chr6_2:29496523-29496542 Msa0914710:intron 40.0%
TCTCTATATGGGAAGGTTGT+TGG - chr6_2:29496644-29496663 Msa0914710:CDS 40.0%
TATATGGGAAGGTTGTTGGA+AGG - chr6_2:29496648-29496667 Msa0914710:CDS 40.0%
! AAGTCTGGTTTCAGTTAACC+AGG - chr6_2:29496830-29496849 Msa0914710:CDS 40.0%
TTGAGGCAAGAGAATGAAGA+AGG - chr6_2:29495440-29495459 Msa0914710:intron 40.0%
GCAAGAGAATGAAGAAGGAA+GGG - chr6_2:29495445-29495464 Msa0914710:intron 40.0%
AAGAAGCCATTTCTACACAC+AGG - chr6_2:29495473-29495492 Msa0914710:intron 40.0%
CAACTTCCTGTGTGTAGAAA+TGG + chr6_2:29495482-29495501 None:intergenic 40.0%
CATTTCTACACACAGGAAGT+TGG - chr6_2:29495480-29495499 Msa0914710:intron 40.0%
AACACAAGCAATGACAGAGA+TGG + chr6_2:29495570-29495589 None:intergenic 40.0%
GTGATGATAGCTGATTGTGT+AGG + chr6_2:29495737-29495756 None:intergenic 40.0%
TCAGCTATCATCACTGATCT+TGG - chr6_2:29495743-29495762 Msa0914710:intron 40.0%
!! GTTTGGTTCTTTGTCCAATG+TGG - chr6_2:29496156-29496175 Msa0914710:intron 40.0%
!!! AGTTCTTGTTTTCCCGAGTT+TGG - chr6_2:29496443-29496462 Msa0914710:intron 40.0%
AGTTTGACCTTGTAACCTCA+AGG - chr6_2:29496522-29496541 Msa0914710:intron 40.0%
GTTTGACCTTGTAACCTCAA+GGG - chr6_2:29496523-29496542 Msa0914710:intron 40.0%
TCTCTATATGGGAAGGTTGT+TGG - chr6_2:29496644-29496663 Msa0914710:CDS 40.0%
TATATGGGAAGGTTGTTGGA+AGG - chr6_2:29496648-29496667 Msa0914710:CDS 40.0%
! AAGTCTGGTTTCAGTTAACC+AGG - chr6_2:29496830-29496849 Msa0914710:CDS 40.0%
GGCAAGAGAATGAAGAAGGA+AGG - chr6_2:29495444-29495463 Msa0914710:intron 45.0%
AGAGATGGAAGAGTCACGAA+TGG + chr6_2:29495555-29495574 None:intergenic 45.0%
! GCTTTAGGCCCTATTCAGTT+TGG - chr6_2:29495599-29495618 Msa0914710:intron 45.0%
GTCATACCTCAGAAACTGAG+AGG + chr6_2:29495769-29495788 None:intergenic 45.0%
TTTGTCCAATGTGGGTGCTA+TGG - chr6_2:29496165-29496184 Msa0914710:CDS 45.0%
ATGGTTGGAGCAATAGCTAG+TGG - chr6_2:29496184-29496203 Msa0914710:CDS 45.0%
GAGATGTCAACTCAACTCAG+TGG - chr6_2:29496495-29496514 Msa0914710:intron 45.0%
! TTTTACGACCATCGTGGCAA+GGG + chr6_2:29496562-29496581 None:intergenic 45.0%
! ATTTTACGACCATCGTGGCA+AGG + chr6_2:29496563-29496582 None:intergenic 45.0%
GGAAGGTTGTTGGAAGGATT+TGG - chr6_2:29496654-29496673 Msa0914710:CDS 45.0%
TTGTTGGAAGGATTTGGCGT+CGG - chr6_2:29496660-29496679 Msa0914710:CDS 45.0%
! AGACTTCCCCTCAAGTTTTG+AGG + chr6_2:29496816-29496835 None:intergenic 45.0%
TCAAAACTTGAGGGGAAGTC+TGG - chr6_2:29496815-29496834 Msa0914710:CDS 45.0%
CTGGTTTCAGTTAACCAGGT+TGG - chr6_2:29496834-29496853 Msa0914710:CDS 45.0%
TGTCACCCTTGGAATTATGC+TGG - chr6_2:29496968-29496987 Msa0914710:exon 45.0%
GGCAAGAGAATGAAGAAGGA+AGG - chr6_2:29495444-29495463 Msa0914710:intron 45.0%
AGAGATGGAAGAGTCACGAA+TGG + chr6_2:29495555-29495574 None:intergenic 45.0%
! GCTTTAGGCCCTATTCAGTT+TGG - chr6_2:29495599-29495618 Msa0914710:intron 45.0%
GTCATACCTCAGAAACTGAG+AGG + chr6_2:29495769-29495788 None:intergenic 45.0%
TTTGTCCAATGTGGGTGCTA+TGG - chr6_2:29496165-29496184 Msa0914710:CDS 45.0%
ATGGTTGGAGCAATAGCTAG+TGG - chr6_2:29496184-29496203 Msa0914710:CDS 45.0%
GAGATGTCAACTCAACTCAG+TGG - chr6_2:29496495-29496514 Msa0914710:intron 45.0%
! TTTTACGACCATCGTGGCAA+GGG + chr6_2:29496562-29496581 None:intergenic 45.0%
! ATTTTACGACCATCGTGGCA+AGG + chr6_2:29496563-29496582 None:intergenic 45.0%
GGAAGGTTGTTGGAAGGATT+TGG - chr6_2:29496654-29496673 Msa0914710:CDS 45.0%
TTGTTGGAAGGATTTGGCGT+CGG - chr6_2:29496660-29496679 Msa0914710:CDS 45.0%
! AGACTTCCCCTCAAGTTTTG+AGG + chr6_2:29496816-29496835 None:intergenic 45.0%
TCAAAACTTGAGGGGAAGTC+TGG - chr6_2:29496815-29496834 Msa0914710:CDS 45.0%
CTGGTTTCAGTTAACCAGGT+TGG - chr6_2:29496834-29496853 Msa0914710:CDS 45.0%
TGTCACCCTTGGAATTATGC+TGG - chr6_2:29496968-29496987 Msa0914710:exon 45.0%
!!! TTTTTATTATTATGTTTTAT+TGG - chr6_2:29496121-29496140 Msa0914710:intron 5.0%
!!! TTTTTATTATTATGTTTTAT+TGG - chr6_2:29496121-29496140 Msa0914710:intron 5.0%
TCTTGGCCTCTCAGTTTCTG+AGG - chr6_2:29495760-29495779 Msa0914710:intron 50.0%
! TCCAATGTGGGTGCTATGGT+TGG - chr6_2:29496169-29496188 Msa0914710:CDS 50.0%
TCCAACCATAGCACCCACAT+TGG + chr6_2:29496173-29496192 None:intergenic 50.0%
CTGAGTATATGGGGCGCAAA+GGG - chr6_2:29496215-29496234 Msa0914710:CDS 50.0%
TGAGTATATGGGGCGCAAAG+GGG - chr6_2:29496216-29496235 Msa0914710:CDS 50.0%
GATTTCAACTCGGTCCCTTG+AGG + chr6_2:29496540-29496559 None:intergenic 50.0%
CGTGGCAAGGGATTTCAACT+CGG + chr6_2:29496550-29496569 None:intergenic 50.0%
GTTGAAATCCCTTGCCACGA+TGG - chr6_2:29496551-29496570 Msa0914710:intron 50.0%
GCATAGCTTTCTGTCACCCT+TGG - chr6_2:29496957-29496976 Msa0914710:exon 50.0%
TCTTGGCCTCTCAGTTTCTG+AGG - chr6_2:29495760-29495779 Msa0914710:intron 50.0%
! TCCAATGTGGGTGCTATGGT+TGG - chr6_2:29496169-29496188 Msa0914710:CDS 50.0%
TCCAACCATAGCACCCACAT+TGG + chr6_2:29496173-29496192 None:intergenic 50.0%
CTGAGTATATGGGGCGCAAA+GGG - chr6_2:29496215-29496234 Msa0914710:CDS 50.0%
TGAGTATATGGGGCGCAAAG+GGG - chr6_2:29496216-29496235 Msa0914710:CDS 50.0%
GATTTCAACTCGGTCCCTTG+AGG + chr6_2:29496540-29496559 None:intergenic 50.0%
CGTGGCAAGGGATTTCAACT+CGG + chr6_2:29496550-29496569 None:intergenic 50.0%
GTTGAAATCCCTTGCCACGA+TGG - chr6_2:29496551-29496570 Msa0914710:intron 50.0%
GCATAGCTTTCTGTCACCCT+TGG - chr6_2:29496957-29496976 Msa0914710:exon 50.0%
GCTGAGTATATGGGGCGCAA+AGG - chr6_2:29496214-29496233 Msa0914710:CDS 55.0%
CTCGGTCCCTTGAGGTTACA+AGG + chr6_2:29496532-29496551 None:intergenic 55.0%
GCTGAGTATATGGGGCGCAA+AGG - chr6_2:29496214-29496233 Msa0914710:CDS 55.0%
CTCGGTCCCTTGAGGTTACA+AGG + chr6_2:29496532-29496551 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 29495350 29497052 29495350 ID=Msa0914710;Name=Msa0914710
chr6_2 mRNA 29495350 29497052 29495350 ID=Msa0914710-mRNA-1;Parent=Msa0914710;Name=Msa0914710-mRNA-1;_AED=0.20;_eAED=0.22;_QI=81|0.6|0.66|1|1|1|6|0|188
chr6_2 exon 29495350 29495439 29495350 ID=Msa0914710-mRNA-1:exon:5363;Parent=Msa0914710-mRNA-1
chr6_2 exon 29495551 29495616 29495551 ID=Msa0914710-mRNA-1:exon:5362;Parent=Msa0914710-mRNA-1
chr6_2 exon 29495999 29496058 29495999 ID=Msa0914710-mRNA-1:exon:5361;Parent=Msa0914710-mRNA-1
chr6_2 exon 29496165 29496254 29496165 ID=Msa0914710-mRNA-1:exon:5360;Parent=Msa0914710-mRNA-1
chr6_2 exon 29496621 29496683 29496621 ID=Msa0914710-mRNA-1:exon:5359;Parent=Msa0914710-mRNA-1
chr6_2 exon 29496774 29497052 29496774 ID=Msa0914710-mRNA-1:exon:5358;Parent=Msa0914710-mRNA-1
chr6_2 five_prime_UTR 29496972 29497052 29496972 ID=Msa0914710-mRNA-1:five_prime_utr;Parent=Msa0914710-mRNA-1
chr6_2 CDS 29496774 29496971 29496774 ID=Msa0914710-mRNA-1:cds;Parent=Msa0914710-mRNA-1
chr6_2 CDS 29496621 29496683 29496621 ID=Msa0914710-mRNA-1:cds;Parent=Msa0914710-mRNA-1
chr6_2 CDS 29496165 29496254 29496165 ID=Msa0914710-mRNA-1:cds;Parent=Msa0914710-mRNA-1
chr6_2 CDS 29495999 29496058 29495999 ID=Msa0914710-mRNA-1:cds;Parent=Msa0914710-mRNA-1
chr6_2 CDS 29495551 29495616 29495551 ID=Msa0914710-mRNA-1:cds;Parent=Msa0914710-mRNA-1
chr6_2 CDS 29495350 29495439 29495350 ID=Msa0914710-mRNA-1:cds;Parent=Msa0914710-mRNA-1
Gene Sequence

>Msa0914710

ATGAGTAGTTTGAGGCAAGAGAATGAAGAAGGAAGGGATCTTAAGAAGCCATTTCTACACACAGGAAGTTGGTTCAAAATCAATGAAAGAAGACAATCAAGTTTGTTTGGGTCAACTAAAGCCATTCGTGACTCTTCCATCTCTGTCATTGCTTGTGTTCTCATTGTTGCTTTAGGCCCTATTCAGTTTGGTTTTACAGCAGGATATACATCACCTACACAATCAGCTATCATCACTGATCTTGGCCTCTCAGTTTCTGAGTTCTCTTTGTTTGGTTCTTTGTCCAATGTGGGTGCTATGGTTGGAGCAATAGCTAGTGGTCAAATTGCTGAGTATATGGGGCGCAAAGGGTCTTTGATGATTGCATCCATTCCAAATATTATTGGTTGGTTGATGATTTCATTTGCAAATGTTCCCGTGTATATAGCCGAAATATCACCTCAAAACTTGAGGGGAAGTCTGGTTTCAGTTAACCAGCTTTCTGTCACCCTTGGAATTATGCTGGCTTATTTGCTAGGACTTTTTGTTCAATGGAGATTCCTTGCAATTTTAGGTAATAGCCTATAA

Protein sequence

>Msa0914710

MSSLRQENEEGRDLKKPFLHTGSWFKINERRQSSLFGSTKAIRDSSISVIACVLIVALGPIQFGFTAGYTSPTQSAIITDLGLSVSEFSLFGSLSNVGAMVGAIASGQIAEYMGRKGSLMIASIPNIIGWLMISFANVPVYIAEISPQNLRGSLVSVNQLSVTLGIMLAYLLGLFVQWRFLAILGNSL*