AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568780 MtrunA17_Chr8g0383721 98.050 359 7 0 1 359 1 359 0.0 726
Msa0568780 MtrunA17_Chr5g0411821 66.106 357 120 1 1 356 1 357 6.62e-174 489
Msa0568780 MtrunA17_Chr4g0064291 65.266 357 123 1 1 356 1 357 1.36e-171 482
Msa0568780 MtrunA17_Chr5g0411801 66.017 359 121 1 1 358 33 391 7.82e-171 481
Msa0568780 MtrunA17_Chr5g0411841 64.426 357 126 1 1 356 1 357 5.94e-168 473
Msa0568780 MtrunA17_Chr5g0411931 63.510 359 130 1 1 358 1 359 3.24e-167 471
Msa0568780 MtrunA17_Chr5g0411901 63.143 350 128 1 8 356 9 358 2.99e-166 468
Msa0568780 MtrunA17_Chr5g0411911 63.897 349 125 1 9 356 11 359 1.05e-164 464
Msa0568780 MtrunA17_Chr5g0411811 63.866 357 128 1 1 356 1 357 2.29e-162 458
Msa0568780 MtrunA17_Chr5g0411881 62.571 350 130 1 8 356 9 358 2.80e-162 458
Msa0568780 MtrunA17_Chr8g0367151 65.181 359 124 1 1 358 1 359 1.15e-161 456
Msa0568780 MtrunA17_Chr5g0411871 59.429 350 141 1 8 356 23 372 1.40e-158 449
Msa0568780 MtrunA17_Chr1g0157021 60.350 343 134 2 15 355 14 356 7.19e-143 409
Msa0568780 MtrunA17_Chr5g0411941 58.757 354 143 2 4 356 6 357 4.21e-140 402
Msa0568780 MtrunA17_Chr5g0411791 63.609 327 118 1 33 358 7 333 4.83e-138 395
Msa0568780 MtrunA17_Chr2g0279791 55.072 345 152 3 14 356 62 405 2.86e-120 353
Msa0568780 MtrunA17_Chr1g0208031 50.292 342 169 1 15 355 13 354 2.33e-116 341
Msa0568780 MtrunA17_Chr2g0279801 52.582 213 88 3 145 356 13 213 1.24e-55 181
Msa0568780 MtrunA17_Chr5g0411851 67.606 71 23 0 1 71 1 71 2.86e-30 112
Msa0568780 MtrunA17_Chr8g0385221 28.622 283 169 11 24 278 67 344 2.41e-24 103
Msa0568780 MtrunA17_Chr5g0411861 61.905 63 24 0 296 358 1 63 9.71e-24 92.8
Msa0568780 MtrunA17_Chr4g0021211 27.566 341 206 13 39 351 61 388 1.59e-17 83.2
Msa0568780 MtrunA17_Chr6g0474141 23.711 291 198 8 15 292 19 298 1.53e-15 77.0
Msa0568780 MtrunA17_Chr7g0262421 25.664 339 211 12 38 341 37 369 8.58e-15 75.1
Msa0568780 MtrunA17_Chr1g0183131 25.074 339 211 12 39 341 36 367 1.15e-13 71.6
Msa0568780 MtrunA17_Chr3g0132351 26.183 317 173 12 39 311 44 343 1.37e-12 68.2
Msa0568780 MtrunA17_Chr3g0118441 25.839 298 186 13 39 306 41 333 1.95e-12 67.8
Msa0568780 MtrunA17_Chr8g0365421 27.083 240 139 7 37 265 103 317 7.66e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568780 AT4G39330.1 76.536 358 83 1 1 357 1 358 0.0 558
Msa0568780 AT2G21730.1 72.126 348 94 2 12 356 6 353 0.0 517
Msa0568780 AT2G21890.1 72.334 347 94 2 12 356 6 352 0.0 517
Msa0568780 AT4G39330.2 74.751 301 75 1 1 300 1 301 9.69e-162 455
Msa0568780 AT4G37970.1 60.393 356 140 1 4 358 5 360 1.07e-159 452
Msa0568780 AT4G37990.1 66.189 349 117 1 9 356 5 353 4.47e-157 445
Msa0568780 AT4G37980.1 64.756 349 122 1 9 356 5 353 1.83e-155 441
Msa0568780 AT4G37970.4 59.864 294 117 1 4 296 5 298 5.68e-126 364
Msa0568780 AT1G72680.1 52.924 342 159 2 16 356 14 354 1.42e-119 350
Msa0568780 AT4G37980.2 62.414 290 108 1 9 297 5 294 2.38e-119 347
Msa0568780 AT3G19450.1 50.435 345 170 1 12 355 10 354 5.78e-113 333
Msa0568780 AT4G34230.1 50.716 349 171 1 8 355 5 353 3.73e-108 321
Msa0568780 AT4G34230.2 50.430 349 172 1 8 355 5 353 2.79e-107 318
Msa0568780 AT4G37970.3 59.336 241 97 1 4 243 5 245 1.81e-100 298
Msa0568780 AT4G37970.2 59.833 239 95 1 4 241 5 243 4.47e-100 296
Msa0568780 AT5G63620.2 26.027 365 227 14 24 352 69 426 2.19e-25 106
Msa0568780 AT5G63620.1 26.027 365 227 14 24 352 69 426 3.90e-25 105
Msa0568780 AT5G63620.3 29.825 228 132 8 24 228 69 291 4.46e-23 98.6
Msa0568780 AT5G43940.1 26.000 350 217 11 39 353 36 378 3.51e-19 88.2
Msa0568780 AT5G43940.2 25.926 351 218 11 39 354 48 391 3.89e-19 88.2
Msa0568780 AT1G22430.2 26.979 341 205 13 39 341 42 376 1.52e-18 86.7
Msa0568780 AT1G22430.1 26.979 341 205 13 39 341 42 376 1.52e-18 86.7
Msa0568780 AT5G51970.1 26.838 272 173 8 36 292 40 300 7.30e-18 84.3
Msa0568780 AT5G51970.2 26.838 272 173 8 36 292 40 300 7.30e-18 84.3
Msa0568780 AT4G22110.2 26.549 339 205 13 39 339 43 375 9.15e-17 81.3
Msa0568780 AT4G22110.1 26.549 339 205 13 39 339 43 375 9.15e-17 81.3
Msa0568780 AT1G64710.2 24.412 340 215 13 39 341 13 347 6.38e-16 78.6
Msa0568780 AT1G64710.1 24.412 340 215 13 39 341 36 370 7.50e-16 78.6
Msa0568780 AT5G42250.1 23.512 336 219 10 39 339 45 377 2.58e-14 73.9
Msa0568780 AT1G22430.3 27.723 202 120 5 39 218 42 239 2.71e-14 73.2
Msa0568780 AT1G22430.4 27.778 216 129 6 39 232 42 252 3.61e-14 72.8
Msa0568780 AT1G22430.5 27.778 216 129 6 39 232 42 252 3.61e-14 72.8
Msa0568780 AT1G22440.1 25.497 302 183 11 39 306 40 333 1.40e-13 71.6
Msa0568780 AT4G22110.3 27.528 178 104 4 39 195 43 216 7.71e-13 68.6
Msa0568780 AT1G77120.1 21.829 339 226 10 39 343 36 369 3.80e-11 64.3

Find 117 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACTTACCCTGTTGTTCC+TGG 0.225700 4_1:-70417350 Msa0568780:CDS
ATCAAATTCGGTAAAGCATT+TGG 0.245686 4_1:-70415465 Msa0568780:CDS
ACCTATAACTCTCCTTATAA+AGG 0.251163 4_1:-70415693 Msa0568780:CDS
ATGGCCTCAGTTTCCTTGTT+TGG 0.279886 4_1:+70415414 None:intergenic
TTGAGTGGGAGTTCGGTTTC+GGG 0.283001 4_1:+70417614 None:intergenic
TTTGAGTGGGAGTTCGGTTT+CGG 0.285055 4_1:+70417613 None:intergenic
TCTGTCTTTCCATTAGTTGC+AGG 0.301516 4_1:-70414700 Msa0568780:intron
GTGGCAGGGCTTGGTGGGTT+AGG 0.307365 4_1:-70415498 Msa0568780:CDS
CTAAAAGCGTGTTTGGTCTT+AGG 0.313817 4_1:-70414066 Msa0568780:three_prime_UTR
TGAGAATTGCAATCAAGATT+TGG 0.319987 4_1:-70415742 Msa0568780:CDS
GAACTCCCACTCAAAGCTTT+TGG 0.323434 4_1:-70417605 Msa0568780:CDS
TAGGTTCGTGTCCCTTTATA+AGG 0.354122 4_1:+70415681 None:intergenic
TTGGGAGTGGCAGGGCTTGG+TGG 0.355141 4_1:-70415504 Msa0568780:CDS
ATTGTCGTCTAATTTATTGT+AGG 0.359090 4_1:-70414138 Msa0568780:three_prime_UTR
TTATAGGTAAATACAGGTTT+AGG 0.360036 4_1:+70415708 None:intergenic
CCCTTTATAAGGAGAGTTAT+AGG 0.360288 4_1:+70415692 None:intergenic
GTAGGCCAAGCAGTGGCATC+AGG 0.367409 4_1:+70414779 None:intergenic
GATGGTTTACCTGCAACTAA+TGG 0.378875 4_1:+70414691 None:intergenic
TATAGCCCGATGAAGTATTA+TGG 0.379807 4_1:-70415549 Msa0568780:CDS
GCCACTCCCAAATGTTTGCC+TGG 0.380570 4_1:+70415516 None:intergenic
CATACATACCCAGGAACAAC+AGG 0.380990 4_1:+70417341 None:intergenic
CCTATAACTCTCCTTATAAA+GGG 0.390671 4_1:-70415692 Msa0568780:CDS
GGCAAACATTTGGGAGTGGC+AGG 0.391166 4_1:-70415513 Msa0568780:CDS
ACAAAGCTGATGTGAAATAT+CGG 0.393376 4_1:-70414313 Msa0568780:CDS
AGTGTATTTATTGACTTATA+CGG 0.395554 4_1:+70417713 None:intergenic
CTCCCTTTCATTTCTCTCGA+AGG 0.396574 4_1:-70417550 Msa0568780:intron
ACTGAAGTTGAATGGGAAAC+TGG 0.399835 4_1:-70414758 Msa0568780:CDS
GACTGAACCAGGCAAACATT+TGG 0.404496 4_1:-70415523 Msa0568780:CDS
TCAAATTCGGTAAAGCATTT+GGG 0.405047 4_1:-70415464 Msa0568780:CDS
GTCTAATTTATTGTAGGCTC+AGG 0.408055 4_1:-70414132 Msa0568780:three_prime_UTR
CCACTTACCCTGTTGTTCCT+GGG 0.410049 4_1:-70417349 Msa0568780:intron
ACTGCAGGACGGAAGCTTAT+CGG 0.411894 4_1:-70414461 Msa0568780:intron
CATTTGGGAGTGGCAGGGCT+TGG 0.412676 4_1:-70415507 Msa0568780:CDS
GGCCATGTTGCAATCAAATT+CGG 0.413822 4_1:-70415477 Msa0568780:CDS
GGAGAGTTATAGGTAAATAC+AGG 0.414003 4_1:+70415702 None:intergenic
GTGCTCCACTTCTGTGTGCC+GGG 0.418161 4_1:-70415581 Msa0568780:CDS
AAAAGCTTTGAGTGGGAGTT+CGG 0.429852 4_1:+70417607 None:intergenic
GGTGCTCCACTTCTGTGTGC+CGG 0.433744 4_1:-70415582 Msa0568780:CDS
CATTCCCTGATGCCACTGCT+TGG 0.437997 4_1:-70414784 Msa0568780:CDS
ACTGAACCAGGCAAACATTT+GGG 0.439930 4_1:-70415522 Msa0568780:CDS
TGGGCTGCTAGAGACACTTC+TGG 0.465043 4_1:-70417581 Msa0568780:CDS
TGTCTGACTAAAAGCGTGTT+TGG 0.474906 4_1:-70414073 Msa0568780:three_prime_UTR
ACACACTCTCAAGAACGATT+GGG 0.475053 4_1:-70417378 Msa0568780:CDS
AAGTGGAGCACCAGCGTCAA+GGG 0.477411 4_1:+70415593 None:intergenic
CGGTAAAGCATTTGGGCTGA+AGG 0.479081 4_1:-70415457 Msa0568780:CDS
TACACACTCTCAAGAACGAT+TGG 0.482360 4_1:-70417379 Msa0568780:CDS
CTCAGTTTCCTTGTTTGGAG+AGG 0.482678 4_1:+70415419 None:intergenic
GCGTCAAGGGGTAAGTTGTC+AGG 0.483209 4_1:+70415606 None:intergenic
CTTGGCCTACTGAAGTTGAA+TGG 0.484993 4_1:-70414766 Msa0568780:CDS
TGGGAGTGGCAGGGCTTGGT+GGG 0.488091 4_1:-70415503 Msa0568780:CDS
TCATACCATAATACTTCATC+GGG 0.495385 4_1:+70415544 None:intergenic
GAGAGCTCAAGGGGCTTGCT+AGG 0.495481 4_1:+70414721 None:intergenic
GTCATACCATAATACTTCAT+CGG 0.503227 4_1:+70415543 None:intergenic
GTTGGCGTTGTGACAAAAGT+TGG 0.504641 4_1:-70415837 Msa0568780:CDS
ATCTGTGTAAGATATAAGAT+TGG 0.509886 4_1:-70414178 Msa0568780:three_prime_UTR
AACCTTCGAGAGAAATGAAA+GGG 0.510126 4_1:+70417548 None:intergenic
CCCAGGAACAACAGGGTAAG+TGG 0.510350 4_1:+70417349 None:intergenic
TTGGCCTACTGAAGTTGAAT+GGG 0.522268 4_1:-70414765 Msa0568780:CDS
AGCTTTGTGAAGCCTTTCCA+TGG 0.525881 4_1:+70414328 None:intergenic
ATCAGCACCAAGTTTGTCAA+TGG 0.528794 4_1:+70415395 None:intergenic
CGGGCTATACACGGTGATCC+CGG 0.532660 4_1:+70415563 None:intergenic
GCATGAAATCAACACGGCCA+TGG 0.534341 4_1:-70414345 Msa0568780:CDS
ATGGAAAGACAGAGAGCTCA+AGG 0.539760 4_1:+70414710 None:intergenic
GTGATCCCGGCACACAGAAG+TGG 0.541709 4_1:+70415576 None:intergenic
CAAAGACCCCGAGAAAATGA+AGG 0.549110 4_1:-70415358 Msa0568780:intron
TATAAAGGGACACGAACCTA+TGG 0.552541 4_1:-70415678 Msa0568780:CDS
AAATCAACACGGCCATGGAA+AGG 0.552965 4_1:-70414340 Msa0568780:CDS
CTTATCGGAGGGAGTAACAT+TGG 0.554132 4_1:-70414446 Msa0568780:CDS
AATGGGAAACTGGTCACTGT+AGG 0.556394 4_1:-70414748 Msa0568780:CDS
GAACCTTCGAGAGAAATGAA+AGG 0.562759 4_1:+70417547 None:intergenic
TGGAGGGATGAAAGAGACTC+AGG 0.563071 4_1:-70414426 Msa0568780:CDS
ACTGAGGCCATTGACAAACT+TGG 0.564477 4_1:-70415402 Msa0568780:CDS
TCTCGGGGTCTTTGGAAACA+AGG 0.567661 4_1:+70415367 None:intergenic
GAAGTGGAGCACCAGCGTCA+AGG 0.573782 4_1:+70415592 None:intergenic
CTACAAACTTGAGAAGGAGT+TGG 0.582204 4_1:+70414274 None:intergenic
TATTAGTACCTCTCCAAACA+AGG 0.586732 4_1:-70415427 Msa0568780:CDS
GTTTCCCATTCAACTTCAGT+AGG 0.589745 4_1:+70414761 None:intergenic
CACACTCTCAAGAACGATTG+GGG 0.590819 4_1:-70417377 Msa0568780:CDS
GCAGGCTGCTATGGGAACCA+TGG 0.590820 4_1:-70414836 Msa0568780:intron
TATTATGGTATGACTGAACC+AGG 0.592818 4_1:-70415534 Msa0568780:CDS
TGGCCTCTACAAACTTGAGA+AGG 0.595694 4_1:+70414268 None:intergenic
GCAAACATTTGGGAGTGGCA+GGG 0.595862 4_1:-70415512 Msa0568780:CDS
CCCAACCAAAAGCTTTGAGT+GGG 0.597594 4_1:+70417600 None:intergenic
TACCGAATTTGATTGCAACA+TGG 0.599803 4_1:+70415475 None:intergenic
ACCAGGCAAACATTTGGGAG+TGG 0.602207 4_1:-70415517 Msa0568780:CDS
AAAATCAGAATAGCCACCAT+AGG 0.602620 4_1:+70415662 None:intergenic
TGGAAAGACAGAGAGCTCAA+GGG 0.604195 4_1:+70414711 None:intergenic
TCGGAGGGAGTAACATTGGA+GGG 0.606287 4_1:-70414442 Msa0568780:CDS
ATCGGAGGGAGTAACATTGG+AGG 0.607417 4_1:-70414443 Msa0568780:CDS
ACTCCTTCTCAAGTTTGTAG+AGG 0.609994 4_1:-70414271 Msa0568780:exon
GTGGGTGATAACGTTGGTGT+TGG 0.610605 4_1:-70415792 Msa0568780:CDS
GAAACTGAACTACATACCGC+TGG 0.611677 4_1:+70415628 None:intergenic
TTGATTCTTCAACATGTGTG+TGG 0.611823 4_1:-70414243 Msa0568780:three_prime_UTR
ATAATAGCAGCTGAGATCGA+TGG 0.612153 4_1:-70417645 Msa0568780:exon
GCCCAACCAAAAGCTTTGAG+TGG 0.615088 4_1:+70417599 None:intergenic
TAGGCCAAGCAGTGGCATCA+GGG 0.618846 4_1:+70414780 None:intergenic
AAATGAGAAATCAAAAGTTG+AGG 0.620431 4_1:+70414218 None:intergenic
GACAACTTACCCCTTGACGC+TGG 0.625682 4_1:-70415603 Msa0568780:CDS
GGAAAGACAGAGAGCTCAAG+GGG 0.626737 4_1:+70414712 None:intergenic
AGTGTGAAAATTCTATATTG+TGG 0.629238 4_1:-70417419 Msa0568780:CDS
CTCTCCAAACAAGGAAACTG+AGG 0.630189 4_1:-70415418 Msa0568780:CDS
CACATGTTGAAGAATCAAAG+TGG 0.632467 4_1:+70414248 None:intergenic
ATGGGAAACTGGTCACTGTA+GGG 0.633427 4_1:-70414747 Msa0568780:CDS
AACTTCAGTAGGCCAAGCAG+TGG 0.635071 4_1:+70414772 None:intergenic
AAAGTAAAGATGCTCATCCA+CGG 0.635118 4_1:+70417749 None:intergenic
AGTGGAGCACCAGCGTCAAG+GGG 0.637977 4_1:+70415594 None:intergenic
AAAGGGACACGAACCTATGG+TGG 0.638008 4_1:-70415675 Msa0568780:CDS
TGTGTCTATGATGTAGTCCA+TGG 0.640415 4_1:+70414819 None:intergenic
CAGGAGATGCTCGATTTCTG+CGG 0.641521 4_1:-70414407 Msa0568780:CDS
ATACTTCATCGGGCTATACA+CGG 0.644181 4_1:+70415554 None:intergenic
TTCAGAGTGGGTGATAACGT+TGG 0.661444 4_1:-70415798 Msa0568780:CDS
GCAGGACGGAAGCTTATCGG+AGG 0.666483 4_1:-70414458 Msa0568780:intron
CAGGACGGAAGCTTATCGGA+GGG 0.671442 4_1:-70414457 Msa0568780:CDS
TGATTCTATTAGGTGGACCG+TGG 0.677936 4_1:-70417766 None:intergenic
ATATCGGTTTGTGATTGATG+TGG 0.686371 4_1:-70414297 Msa0568780:CDS
ATACATACCCAGGAACAACA+GGG 0.734302 4_1:+70417342 None:intergenic
TAAGATGCATGAAATCAACA+CGG 0.753982 4_1:-70414351 Msa0568780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTTTTATTTTTTGT+AGG - chr4_1:70414227-70414246 Msa0568780:three_prime_UTR 10.0%
!!! AAATTTAAAATATTTTGTGT+AGG + chr4_1:70416543-70416562 None:intergenic 10.0%
!! TAAATATATATTCAGAAATA+AGG + chr4_1:70416672-70416691 None:intergenic 10.0%
!!! TGTATAATATTTTATAAGAT+TGG - chr4_1:70417734-70417753 Msa0568780:five_prime_UTR 10.0%
!! TATTTGATTGTTAAATTAGT+TGG - chr4_1:70415667-70415686 Msa0568780:CDS 15.0%
!!! AGTGTATTTATTGACTTATA+CGG + chr4_1:70413980-70413999 None:intergenic 20.0%
!!! TTTATTTTTTGTAGGGAAAA+TGG - chr4_1:70414235-70414254 Msa0568780:three_prime_UTR 20.0%
!! TGTTGAATTGAATAGAAAAA+TGG - chr4_1:70414497-70414516 Msa0568780:intron 20.0%
!!! TAATTCACTTTATTTACCTT+TGG - chr4_1:70414706-70414725 Msa0568780:CDS 20.0%
!! ATTTAATTATCTGTTCGTAA+GGG + chr4_1:70415030-70415049 None:intergenic 20.0%
!! TATTTAATTATCTGTTCGTA+AGG + chr4_1:70415031-70415050 None:intergenic 20.0%
!! TGTTAAACATGATTAAAAAC+AGG + chr4_1:70415079-70415098 None:intergenic 20.0%
!!! AGTTCAAATTCTGTTTTTTA+AGG + chr4_1:70415120-70415139 None:intergenic 20.0%
!!! TTTTCAAATTATTAGTGTGT+CGG + chr4_1:70415201-70415220 None:intergenic 20.0%
!!! TGTTCATTCTTTTTCATTAA+TGG - chr4_1:70415386-70415405 Msa0568780:CDS 20.0%
!!! TCTTTTTCATTAATGGTTTA+CGG - chr4_1:70415393-70415412 Msa0568780:CDS 20.0%
!! AAACTATTAATCAATAGTCA+AGG + chr4_1:70415701-70415720 None:intergenic 20.0%
!! ATCCATAGTTTACTTATAAA+TGG - chr4_1:70416470-70416489 Msa0568780:intron 20.0%
!! TCCATAGTTTACTTATAAAT+GGG - chr4_1:70416471-70416490 Msa0568780:intron 20.0%
!! TAGAATAATATAGTAATCGT+TGG - chr4_1:70416574-70416593 Msa0568780:intron 20.0%
!! GGCACTATATATATATTAAT+TGG + chr4_1:70416701-70416720 None:intergenic 20.0%
!! TTTGTTTATATACTCATTGA+CGG + chr4_1:70416747-70416766 None:intergenic 20.0%
!!! GTTTAAATACAATTTTATGC+AGG - chr4_1:70416836-70416855 Msa0568780:intron 20.0%
!! CAATTCAAATTCACATATTA+TGG + chr4_1:70417051-70417070 None:intergenic 20.0%
!! TGAAAATTTGGATAATTCAT+TGG + chr4_1:70417193-70417212 None:intergenic 20.0%
! AGTGTGAAAATTCTATATTG+TGG - chr4_1:70414271-70414290 Msa0568780:exon 25.0%
! TATTCAATTCAACAGAAAGA+CGG + chr4_1:70414491-70414510 None:intergenic 25.0%
! CATACTTGTCTATTAGAATT+TGG - chr4_1:70414672-70414691 Msa0568780:intron 25.0%
! AGCTTATGAAAATTCTCATA+AGG + chr4_1:70414818-70414837 None:intergenic 25.0%
! TAGGTGGTTATTCATATAAT+AGG + chr4_1:70415056-70415075 None:intergenic 25.0%
! AAACATGATTAAAAACAGGT+AGG + chr4_1:70415075-70415094 None:intergenic 25.0%
! TAATCATGTTTAACACACTT+AGG - chr4_1:70415084-70415103 Msa0568780:intron 25.0%
! TTAAGTGTAATTACAAGTGT+CGG - chr4_1:70415231-70415250 Msa0568780:intron 25.0%
! CATTAATCCTAGTAAACTAT+TGG - chr4_1:70415433-70415452 Msa0568780:CDS 25.0%
!!! ATGTAATTTTGAGGTTACAT+GGG + chr4_1:70415459-70415478 None:intergenic 25.0%
!!! TATGTAATTTTGAGGTTACA+TGG + chr4_1:70415460-70415479 None:intergenic 25.0%
!! AGACACATTATGTAATTTTG+AGG + chr4_1:70415468-70415487 None:intergenic 25.0%
!! GATGATATGTATGCAATTTT+TGG - chr4_1:70415567-70415586 Msa0568780:CDS 25.0%
! CTTGCTTATAAGTTATATGA+AGG - chr4_1:70415762-70415781 Msa0568780:CDS 25.0%
! AATGTGAAAAAATTCAGAGT+GGG - chr4_1:70415880-70415899 Msa0568780:intron 25.0%
! TTATAGGTAAATACAGGTTT+AGG + chr4_1:70415985-70416004 None:intergenic 25.0%
! GTTCTATATAGGAGTTATTA+TGG - chr4_1:70416439-70416458 Msa0568780:intron 25.0%
!!! ATCCAGAAATTTTGAAAACT+GGG + chr4_1:70416724-70416743 None:intergenic 25.0%
! AATTGACAGAGAATTATTGA+TGG + chr4_1:70417020-70417039 None:intergenic 25.0%
! TAAATGTTTCAGTTCAGATT+TGG + chr4_1:70417105-70417124 None:intergenic 25.0%
! ACATTAGACATGTGAAAATT+TGG + chr4_1:70417205-70417224 None:intergenic 25.0%
! AAATGAGAAATCAAAAGTTG+AGG + chr4_1:70417475-70417494 None:intergenic 25.0%
! ATCTGTGTAAGATATAAGAT+TGG - chr4_1:70417512-70417531 Msa0568780:intron 25.0%
! ATTGTCGTCTAATTTATTGT+AGG - chr4_1:70417552-70417571 Msa0568780:CDS 25.0%
AAGACTGAGATGAAAAGAAA+AGG + chr4_1:70414192-70414211 None:intergenic 30.0%
AAAGAAAAACATACATACCC+AGG + chr4_1:70414361-70414380 None:intergenic 30.0%
AATTTGAGGGGTAAAGAATT+GGG + chr4_1:70414538-70414557 None:intergenic 30.0%
TAATTTGAGGGGTAAAGAAT+TGG + chr4_1:70414539-70414558 None:intergenic 30.0%
AAACATACACATCATTCCAA+AGG + chr4_1:70414725-70414744 None:intergenic 30.0%
! TTTGGAATGATGTGTATGTT+TGG - chr4_1:70414724-70414743 Msa0568780:CDS 30.0%
!! GATATGTATGCAATTTTTGG+TGG - chr4_1:70415570-70415589 Msa0568780:CDS 30.0%
ATTAATAGTTTATGCGTGCA+TGG - chr4_1:70415710-70415729 Msa0568780:CDS 30.0%
CTTTGTGCAATAGTCAATAT+TGG - chr4_1:70415733-70415752 Msa0568780:CDS 30.0%
AGTTATATGAAGGTAAAACC+AGG - chr4_1:70415772-70415791 Msa0568780:CDS 30.0%
!!! TTAACTTGCATTGACTTTTG+TGG - chr4_1:70415807-70415826 Msa0568780:CDS 30.0%
CAATGTGAAAAAATTCAGAG+TGG - chr4_1:70415879-70415898 Msa0568780:intron 30.0%
TGAGAATTGCAATCAAGATT+TGG - chr4_1:70415948-70415967 Msa0568780:intron 30.0%
ACCTATAACTCTCCTTATAA+AGG - chr4_1:70415997-70416016 Msa0568780:intron 30.0%
CCTATAACTCTCCTTATAAA+GGG - chr4_1:70415998-70416017 Msa0568780:intron 30.0%
TCATACCATAATACTTCATC+GGG + chr4_1:70416149-70416168 None:intergenic 30.0%
GTCATACCATAATACTTCAT+CGG + chr4_1:70416150-70416169 None:intergenic 30.0%
! ATCAAATTCGGTAAAGCATT+TGG - chr4_1:70416225-70416244 Msa0568780:intron 30.0%
! TCAAATTCGGTAAAGCATTT+GGG - chr4_1:70416226-70416245 Msa0568780:intron 30.0%
! TATCTTACCTTCATTTTCTC+GGG + chr4_1:70416342-70416361 None:intergenic 30.0%
! GTATCTTACCTTCATTTTCT+CGG + chr4_1:70416343-70416362 None:intergenic 30.0%
!!! TGGTTTTAAAGTTAATGGTG+TGG + chr4_1:70416365-70416384 None:intergenic 30.0%
!!! CAGGTTGGTTTTAAAGTTAA+TGG + chr4_1:70416370-70416389 None:intergenic 30.0%
ACGAAATAAGAGTAAAACAG+CGG + chr4_1:70416413-70416432 None:intergenic 30.0%
TTCGTCATACAGTTCTATAT+AGG - chr4_1:70416428-70416447 Msa0568780:intron 30.0%
GCCCATTTATAAGTAAACTA+TGG + chr4_1:70416475-70416494 None:intergenic 30.0%
TAGTTTACTTATAAATGGGC+AGG - chr4_1:70416475-70416494 Msa0568780:intron 30.0%
GAGAATAAGTGTAGGTTATT+TGG + chr4_1:70416608-70416627 None:intergenic 30.0%
!! TCCAGAAATTTTGAAAACTG+GGG + chr4_1:70416723-70416742 None:intergenic 30.0%
!! GATCCAGAAATTTTGAAAAC+TGG + chr4_1:70416725-70416744 None:intergenic 30.0%
!! AGTTTGAACAATGGATTGAT+TGG - chr4_1:70416786-70416805 Msa0568780:intron 30.0%
TAAGATGCATGAAATCAACA+CGG - chr4_1:70417339-70417358 Msa0568780:intron 30.0%
ACAAAGCTGATGTGAAATAT+CGG - chr4_1:70417377-70417396 Msa0568780:CDS 30.0%
AAAGTAAAGATGCTCATCCA+CGG + chr4_1:70413944-70413963 None:intergenic 35.0%
ATCAAAAAGAAACGAGAACG+CGG - chr4_1:70414019-70414038 Msa0568780:three_prime_UTR 35.0%
AACCTTCGAGAGAAATGAAA+GGG + chr4_1:70414145-70414164 None:intergenic 35.0%
TTCTTTACCCCTCAAATTAG+AGG - chr4_1:70414540-70414559 Msa0568780:intron 35.0%
GTATGACATAATCATCAAGC+AGG + chr4_1:70414653-70414672 None:intergenic 35.0%
CATGATTAAAAACAGGTAGG+TGG + chr4_1:70415072-70415091 None:intergenic 35.0%
TACTTTGCAACTATGAAGCA+CGG + chr4_1:70415315-70415334 None:intergenic 35.0%
CTGTGTTACAAATGAAGTCT+AGG - chr4_1:70415486-70415505 Msa0568780:CDS 35.0%
CAATATTCACGATCTAGAAG+CGG - chr4_1:70415601-70415620 Msa0568780:CDS 35.0%
! TCACTGCAGTTTTCTATCTT+TGG - chr4_1:70415630-70415649 Msa0568780:CDS 35.0%
! TTTTGCAGGCATGAAATTGT+TGG - chr4_1:70415835-70415854 Msa0568780:CDS 35.0%
GGAGAGTTATAGGTAAATAC+AGG + chr4_1:70415991-70416010 None:intergenic 35.0%
CCCTTTATAAGGAGAGTTAT+AGG + chr4_1:70416001-70416020 None:intergenic 35.0%
AAAATCAGAATAGCCACCAT+AGG + chr4_1:70416031-70416050 None:intergenic 35.0%
! TATAGCCCGATGAAGTATTA+TGG - chr4_1:70416141-70416160 Msa0568780:intron 35.0%
TATTATGGTATGACTGAACC+AGG - chr4_1:70416156-70416175 Msa0568780:intron 35.0%
TACCGAATTTGATTGCAACA+TGG + chr4_1:70416218-70416237 None:intergenic 35.0%
TATTAGTACCTCTCCAAACA+AGG - chr4_1:70416263-70416282 Msa0568780:intron 35.0%
! ATCTTACCTTCATTTTCTCG+GGG + chr4_1:70416341-70416360 None:intergenic 35.0%
GTCAAGTGTGATTTAAGTGT+GGG + chr4_1:70416637-70416656 None:intergenic 35.0%
TGTCAAGTGTGATTTAAGTG+TGG + chr4_1:70416638-70416657 None:intergenic 35.0%
!! CCAGAAATTTTGAAAACTGG+GGG + chr4_1:70416722-70416741 None:intergenic 35.0%
GTAAACCTGAGTTTGAACAA+TGG - chr4_1:70416777-70416796 Msa0568780:intron 35.0%
TCAATCCATTGTTCAAACTC+AGG + chr4_1:70416785-70416804 None:intergenic 35.0%
! AATTTTATGCAGGCTGCTAT+GGG - chr4_1:70416846-70416865 Msa0568780:intron 35.0%
CAGTTCAGATTTGGAAGTAA+CGG + chr4_1:70417096-70417115 None:intergenic 35.0%
!! ATATCGGTTTGTGATTGATG+TGG - chr4_1:70417393-70417412 Msa0568780:CDS 35.0%
CACATGTTGAAGAATCAAAG+TGG + chr4_1:70417445-70417464 None:intergenic 35.0%
TTGATTCTTCAACATGTGTG+TGG - chr4_1:70417447-70417466 Msa0568780:intron 35.0%
GTCTAATTTATTGTAGGCTC+AGG - chr4_1:70417558-70417577 Msa0568780:CDS 35.0%
ATAATAGCAGCTGAGATCGA+TGG - chr4_1:70414045-70414064 Msa0568780:three_prime_UTR 40.0%
!! AAAAGCTTTGAGTGGGAGTT+CGG + chr4_1:70414086-70414105 None:intergenic 40.0%
GAACCTTCGAGAGAAATGAA+AGG + chr4_1:70414146-70414165 None:intergenic 40.0%
TACACACTCTCAAGAACGAT+TGG - chr4_1:70414311-70414330 Msa0568780:CDS 40.0%
ACACACTCTCAAGAACGATT+GGG - chr4_1:70414312-70414331 Msa0568780:CDS 40.0%
ATACATACCCAGGAACAACA+GGG + chr4_1:70414351-70414370 None:intergenic 40.0%
TTTACCCCTCAAATTAGAGG+TGG - chr4_1:70414543-70414562 Msa0568780:intron 40.0%
AACCTCCACCTCTAATTTGA+GGG + chr4_1:70414551-70414570 None:intergenic 40.0%
AGTTGCAAAGCTATGAAGCA+CGG - chr4_1:70415151-70415170 Msa0568780:intron 40.0%
AAAGCTATGAAGCACGGATA+CGG - chr4_1:70415157-70415176 Msa0568780:intron 40.0%
ACATGGGCCAATAGTTTACT+AGG + chr4_1:70415443-70415462 None:intergenic 40.0%
CACTGCAAAGACTGGAAATA+AGG - chr4_1:70415545-70415564 Msa0568780:CDS 40.0%
! CTGCAGTTTTCTATCTTTGG+AGG - chr4_1:70415633-70415652 Msa0568780:CDS 40.0%
AGGTAAAACCAGGACATCTT+TGG - chr4_1:70415782-70415801 Msa0568780:CDS 40.0%
GGTAAAACCAGGACATCTTT+GGG - chr4_1:70415783-70415802 Msa0568780:CDS 40.0%
AGTTAATCCCAAAGATGTCC+TGG + chr4_1:70415793-70415812 None:intergenic 40.0%
! CTTTTGTGGTTGTGTTTTGC+AGG - chr4_1:70415821-70415840 Msa0568780:CDS 40.0%
TAGGTTCGTGTCCCTTTATA+AGG + chr4_1:70416012-70416031 None:intergenic 40.0%
TATAAAGGGACACGAACCTA+TGG - chr4_1:70416012-70416031 Msa0568780:intron 40.0%
! TGGTGGCTATTCTGATTTTG+TGG - chr4_1:70416032-70416051 Msa0568780:intron 40.0%
! ATTTTGTGGTTGTTCACCAG+CGG - chr4_1:70416046-70416065 Msa0568780:intron 40.0%
ATACTTCATCGGGCTATACA+CGG + chr4_1:70416139-70416158 None:intergenic 40.0%
ACTGAACCAGGCAAACATTT+GGG - chr4_1:70416168-70416187 Msa0568780:intron 40.0%
GGCCATGTTGCAATCAAATT+CGG - chr4_1:70416213-70416232 Msa0568780:intron 40.0%
ATCAGCACCAAGTTTGTCAA+TGG + chr4_1:70416298-70416317 None:intergenic 40.0%
AAAACCAACCTGTTTCGTCT+AGG - chr4_1:70416378-70416397 Msa0568780:intron 40.0%
ATAACCTAGACGAAACAGGT+TGG + chr4_1:70416385-70416404 None:intergenic 40.0%
GGCAAAGAGAGAATAAGTGT+AGG + chr4_1:70416616-70416635 None:intergenic 40.0%
! CCCCCAGTTTTCAAAATTTC+TGG - chr4_1:70416719-70416738 Msa0568780:intron 40.0%
! CAATTTTATGCAGGCTGCTA+TGG - chr4_1:70416845-70416864 Msa0568780:intron 40.0%
TGTGTCTATGATGTAGTCCA+TGG + chr4_1:70416874-70416893 None:intergenic 40.0%
TTGGCCTACTGAAGTTGAAT+GGG - chr4_1:70416925-70416944 Msa0568780:intron 40.0%
GTTTCCCATTCAACTTCAGT+AGG + chr4_1:70416932-70416951 None:intergenic 40.0%
ACTGAAGTTGAATGGGAAAC+TGG - chr4_1:70416932-70416951 Msa0568780:intron 40.0%
TCTGTCTTTCCATTAGTTGC+AGG - chr4_1:70416990-70417009 Msa0568780:intron 40.0%
GATGGTTTACCTGCAACTAA+TGG + chr4_1:70417002-70417021 None:intergenic 40.0%
ATGTCTAATGTCTTGACTGC+AGG - chr4_1:70417214-70417233 Msa0568780:intron 40.0%
CTACAAACTTGAGAAGGAGT+TGG + chr4_1:70417419-70417438 None:intergenic 40.0%
ACTCCTTCTCAAGTTTGTAG+AGG - chr4_1:70417419-70417438 Msa0568780:CDS 40.0%
!! CACAGATCTTAGCTTTTCTC+AGG + chr4_1:70417499-70417518 None:intergenic 40.0%
! TGTCTGACTAAAAGCGTGTT+TGG - chr4_1:70417617-70417636 Msa0568780:CDS 40.0%
! CTAAAAGCGTGTTTGGTCTT+AGG - chr4_1:70417624-70417643 Msa0568780:CDS 40.0%
TTTGAGTGGGAGTTCGGTTT+CGG + chr4_1:70414080-70414099 None:intergenic 45.0%
! GAACTCCCACTCAAAGCTTT+TGG - chr4_1:70414085-70414104 Msa0568780:three_prime_UTR 45.0%
! TCCCACTCAAAGCTTTTGGT+TGG - chr4_1:70414089-70414108 Msa0568780:three_prime_UTR 45.0%
!! CCCAACCAAAAGCTTTGAGT+GGG + chr4_1:70414093-70414112 None:intergenic 45.0%
!! CCCACTCAAAGCTTTTGGTT+GGG - chr4_1:70414090-70414109 Msa0568780:three_prime_UTR 45.0%
CTCCCTTTCATTTCTCTCGA+AGG - chr4_1:70414140-70414159 Msa0568780:three_prime_UTR 45.0%
CACACTCTCAAGAACGATTG+GGG - chr4_1:70414313-70414332 Msa0568780:CDS 45.0%
CATACATACCCAGGAACAAC+AGG + chr4_1:70414352-70414371 None:intergenic 45.0%
ACCTCCACCTCTAATTTGAG+GGG + chr4_1:70414550-70414569 None:intergenic 45.0%
CAACCTCCACCTCTAATTTG+AGG + chr4_1:70414552-70414571 None:intergenic 45.0%
! TCTGTTCGTAAGGGCTTGTT+TGG + chr4_1:70415021-70415040 None:intergenic 45.0%
TTCAAGTGCACTGCAAAGAC+TGG - chr4_1:70415537-70415556 Msa0568780:CDS 45.0%
GTTGGCGTTGTGACAAAAGT+TGG - chr4_1:70415853-70415872 Msa0568780:intron 45.0%
! TTCAGAGTGGGTGATAACGT+TGG - chr4_1:70415892-70415911 Msa0568780:intron 45.0%
GAAACTGAACTACATACCGC+TGG + chr4_1:70416065-70416084 None:intergenic 45.0%
GACTGAACCAGGCAAACATT+TGG - chr4_1:70416167-70416186 Msa0568780:intron 45.0%
! CTCAGTTTCCTTGTTTGGAG+AGG + chr4_1:70416274-70416293 None:intergenic 45.0%
CTCTCCAAACAAGGAAACTG+AGG - chr4_1:70416272-70416291 Msa0568780:intron 45.0%
ATGGCCTCAGTTTCCTTGTT+TGG + chr4_1:70416279-70416298 None:intergenic 45.0%
ACTGAGGCCATTGACAAACT+TGG - chr4_1:70416288-70416307 Msa0568780:intron 45.0%
! CTTCATTTTCTCGGGGTCTT+TGG + chr4_1:70416334-70416353 None:intergenic 45.0%
CAAAGACCCCGAGAAAATGA+AGG - chr4_1:70416332-70416351 Msa0568780:intron 45.0%
GAGCATAACCTAGACGAAAC+AGG + chr4_1:70416389-70416408 None:intergenic 45.0%
TTATAAATGGGCAGGTCGCT+AGG - chr4_1:70416483-70416502 Msa0568780:intron 45.0%
TATAAATGGGCAGGTCGCTA+GGG - chr4_1:70416484-70416503 Msa0568780:intron 45.0%
ATGCATGTGTGATGTGGTGT+GGG - chr4_1:70416511-70416530 Msa0568780:intron 45.0%
CTTGGCCTACTGAAGTTGAA+TGG - chr4_1:70416924-70416943 Msa0568780:intron 45.0%
AATGGGAAACTGGTCACTGT+AGG - chr4_1:70416942-70416961 Msa0568780:intron 45.0%
ATGGGAAACTGGTCACTGTA+GGG - chr4_1:70416943-70416962 Msa0568780:intron 45.0%
TGGAAAGACAGAGAGCTCAA+GGG + chr4_1:70416982-70417001 None:intergenic 45.0%
ATGGAAAGACAGAGAGCTCA+AGG + chr4_1:70416983-70417002 None:intergenic 45.0%
!! GGAAGTAACGGACTCATTCT+TGG + chr4_1:70417084-70417103 None:intergenic 45.0%
CTAATGTCTTGACTGCAGGA+CGG - chr4_1:70417218-70417237 Msa0568780:intron 45.0%
CTTATCGGAGGGAGTAACAT+TGG - chr4_1:70417244-70417263 Msa0568780:intron 45.0%
AAATCAACACGGCCATGGAA+AGG - chr4_1:70417350-70417369 Msa0568780:CDS 45.0%
! AGCTTTGTGAAGCCTTTCCA+TGG + chr4_1:70417365-70417384 None:intergenic 45.0%
TGGCCTCTACAAACTTGAGA+AGG + chr4_1:70417425-70417444 None:intergenic 45.0%
!!! ATTAATTTTTATTTTTTGTA+GGG - chr4_1:70414228-70414247 Msa0568780:three_prime_UTR 5.0%
TTGAGTGGGAGTTCGGTTTC+GGG + chr4_1:70414079-70414098 None:intergenic 50.0%
!! GCCCAACCAAAAGCTTTGAG+TGG + chr4_1:70414094-70414113 None:intergenic 50.0%
ACCACTTACCCTGTTGTTCC+TGG - chr4_1:70414340-70414359 Msa0568780:CDS 50.0%
CCACTTACCCTGTTGTTCCT+GGG - chr4_1:70414341-70414360 Msa0568780:CDS 50.0%
ACCCCTCAAATTAGAGGTGG+AGG - chr4_1:70414546-70414565 Msa0568780:intron 50.0%
TGAAGCACGGATACGGACAT+CGG - chr4_1:70415164-70415183 Msa0568780:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+TGG - chr4_1:70415242-70415261 Msa0568780:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + chr4_1:70415304-70415323 None:intergenic 50.0%
! GTGGGTGATAACGTTGGTGT+TGG - chr4_1:70415898-70415917 Msa0568780:intron 50.0%
AAAGGGACACGAACCTATGG+TGG - chr4_1:70416015-70416034 Msa0568780:intron 50.0%
ACCAGGCAAACATTTGGGAG+TGG - chr4_1:70416173-70416192 Msa0568780:intron 50.0%
GCAAACATTTGGGAGTGGCA+GGG - chr4_1:70416178-70416197 Msa0568780:intron 50.0%
! CGGTAAAGCATTTGGGCTGA+AGG - chr4_1:70416233-70416252 Msa0568780:intron 50.0%
! TCTCGGGGTCTTTGGAAACA+AGG + chr4_1:70416326-70416345 None:intergenic 50.0%
GATGCATGTGTGATGTGGTG+TGG - chr4_1:70416510-70416529 Msa0568780:intron 50.0%
AACTTCAGTAGGCCAAGCAG+TGG + chr4_1:70416921-70416940 None:intergenic 50.0%
GGAAAGACAGAGAGCTCAAG+GGG + chr4_1:70416981-70417000 None:intergenic 50.0%
ACTGCAGGACGGAAGCTTAT+CGG - chr4_1:70417229-70417248 Msa0568780:intron 50.0%
ATCGGAGGGAGTAACATTGG+AGG - chr4_1:70417247-70417266 Msa0568780:intron 50.0%
TCGGAGGGAGTAACATTGGA+GGG - chr4_1:70417248-70417267 Msa0568780:intron 50.0%
TGGAGGGATGAAAGAGACTC+AGG - chr4_1:70417264-70417283 Msa0568780:intron 50.0%
CAGGAGATGCTCGATTTCTG+CGG - chr4_1:70417283-70417302 Msa0568780:intron 50.0%
GCATGAAATCAACACGGCCA+TGG - chr4_1:70417345-70417364 Msa0568780:intron 50.0%
TGGGCTGCTAGAGACACTTC+TGG - chr4_1:70414109-70414128 Msa0568780:three_prime_UTR 55.0%
CCCAGGAACAACAGGGTAAG+TGG + chr4_1:70414344-70414363 None:intergenic 55.0%
!! TGTCGGTGTCGTGTTGGTGT+CGG - chr4_1:70415248-70415267 Msa0568780:intron 55.0%
GATTAGGCGTGTCCTGGTGT+CGG + chr4_1:70415282-70415301 None:intergenic 55.0%
GCGTCAAGGGGTAAGTTGTC+AGG + chr4_1:70416087-70416106 None:intergenic 55.0%
GACAACTTACCCCTTGACGC+TGG - chr4_1:70416087-70416106 Msa0568780:intron 55.0%
! AAGTGGAGCACCAGCGTCAA+GGG + chr4_1:70416100-70416119 None:intergenic 55.0%
GCCACTCCCAAATGTTTGCC+TGG + chr4_1:70416177-70416196 None:intergenic 55.0%
GGCAAACATTTGGGAGTGGC+AGG - chr4_1:70416177-70416196 Msa0568780:intron 55.0%
GGACGGATGCATGTGTGATG+TGG - chr4_1:70416505-70416524 Msa0568780:intron 55.0%
CATTCCCTGATGCCACTGCT+TGG - chr4_1:70416906-70416925 Msa0568780:intron 55.0%
TAGGCCAAGCAGTGGCATCA+GGG + chr4_1:70416913-70416932 None:intergenic 55.0%
CAGGACGGAAGCTTATCGGA+GGG - chr4_1:70417233-70417252 Msa0568780:intron 55.0%
ACCAGGACACGCCTAATCCG+AGG - chr4_1:70415284-70415303 Msa0568780:intron 60.0%
! TCCTCGGATTAGGCGTGTCC+TGG + chr4_1:70415288-70415307 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + chr4_1:70415298-70415317 None:intergenic 60.0%
! AGTGGAGCACCAGCGTCAAG+GGG + chr4_1:70416099-70416118 None:intergenic 60.0%
! GAAGTGGAGCACCAGCGTCA+AGG + chr4_1:70416101-70416120 None:intergenic 60.0%
GGTGCTCCACTTCTGTGTGC+CGG - chr4_1:70416108-70416127 Msa0568780:intron 60.0%
GTGCTCCACTTCTGTGTGCC+GGG - chr4_1:70416109-70416128 Msa0568780:intron 60.0%
GTGATCCCGGCACACAGAAG+TGG + chr4_1:70416117-70416136 None:intergenic 60.0%
CGGGCTATACACGGTGATCC+CGG + chr4_1:70416130-70416149 None:intergenic 60.0%
CATTTGGGAGTGGCAGGGCT+TGG - chr4_1:70416183-70416202 Msa0568780:intron 60.0%
AATGGGCAGGTCGCTAGGGA+CGG - chr4_1:70416488-70416507 Msa0568780:intron 60.0%
GCAGGCTGCTATGGGAACCA+TGG - chr4_1:70416854-70416873 Msa0568780:intron 60.0%
GTAGGCCAAGCAGTGGCATC+AGG + chr4_1:70416914-70416933 None:intergenic 60.0%
! GAGAGCTCAAGGGGCTTGCT+AGG + chr4_1:70416972-70416991 None:intergenic 60.0%
GCAGGACGGAAGCTTATCGG+AGG - chr4_1:70417232-70417251 Msa0568780:intron 60.0%
TCGGACACGTGTCCGACACC+AGG - chr4_1:70415267-70415286 Msa0568780:intron 65.0%
TTGGGAGTGGCAGGGCTTGG+TGG - chr4_1:70416186-70416205 Msa0568780:intron 65.0%
! TGGGAGTGGCAGGGCTTGGT+GGG - chr4_1:70416187-70416206 Msa0568780:intron 65.0%
!! GTGGCAGGGCTTGGTGGGTT+AGG - chr4_1:70416192-70416211 Msa0568780:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70413936 70417776 70413936 ID=Msa0568780;Name=Msa0568780
chr4_1 mRNA 70413936 70417776 70413936 ID=Msa0568780-mRNA-1;Parent=Msa0568780;Name=Msa0568780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=128|1|1|1|1|1|5|338|359
chr4_1 exon 70413936 70414476 70413936 ID=Msa0568780-mRNA-1:exon:23773;Parent=Msa0568780-mRNA-1
chr4_1 exon 70414701 70414854 70414701 ID=Msa0568780-mRNA-1:exon:23772;Parent=Msa0568780-mRNA-1
chr4_1 exon 70415359 70415869 70415359 ID=Msa0568780-mRNA-1:exon:23771;Parent=Msa0568780-mRNA-1
chr4_1 exon 70417350 70417463 70417350 ID=Msa0568780-mRNA-1:exon:23770;Parent=Msa0568780-mRNA-1
chr4_1 exon 70417551 70417776 70417551 ID=Msa0568780-mRNA-1:exon:23769;Parent=Msa0568780-mRNA-1
chr4_1 five_prime_UTR 70417649 70417776 70417649 ID=Msa0568780-mRNA-1:five_prime_utr;Parent=Msa0568780-mRNA-1
chr4_1 CDS 70417551 70417648 70417551 ID=Msa0568780-mRNA-1:cds;Parent=Msa0568780-mRNA-1
chr4_1 CDS 70417350 70417463 70417350 ID=Msa0568780-mRNA-1:cds;Parent=Msa0568780-mRNA-1
chr4_1 CDS 70415359 70415869 70415359 ID=Msa0568780-mRNA-1:cds;Parent=Msa0568780-mRNA-1
chr4_1 CDS 70414701 70414854 70414701 ID=Msa0568780-mRNA-1:cds;Parent=Msa0568780-mRNA-1
chr4_1 CDS 70414274 70414476 70414274 ID=Msa0568780-mRNA-1:cds;Parent=Msa0568780-mRNA-1
chr4_1 three_prime_UTR 70413936 70414273 70413936 ID=Msa0568780-mRNA-1:three_prime_utr;Parent=Msa0568780-mRNA-1
Gene Sequence

>Msa0568780

ATGGCGAAATCACCCGAAACCGAACTCCCACTCAAAGCTTTTGGTTGGGCTGCTAGAGACACTTCTGGCACACTCTCTCCCTTTCATTTCTCTCGAAGGGAAAATGGTGATGATGATGTAAGTGTGAAAATTCTATATTGTGGAGTTTGTCATTCTGATCTACACACTCTCAAGAACGATTGGGGTTTCACCACTTACCCTGTTGTTCCTGGGCATGAAATTGTTGGCGTTGTGACAAAAGTTGGAATCAATGTGAAAAAATTCAGAGTGGGTGATAACGTTGGTGTTGGTGTAATTGTCGAGTCTTGTCAGACTTGTGAGAATTGCAATCAAGATTTGGAGCAGTACTGTCCTAAACCTGTATTTACCTATAACTCTCCTTATAAAGGGACACGAACCTATGGTGGCTATTCTGATTTTGTGGTTGTTCACCAGCGGTATGTAGTTCAGTTTCCTGACAACTTACCCCTTGACGCTGGTGCTCCACTTCTGTGTGCCGGGATCACCGTGTATAGCCCGATGAAGTATTATGGTATGACTGAACCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGCCATGTTGCAATCAAATTCGGTAAAGCATTTGGGCTGAAGGTTACTGTTATTAGTACCTCTCCAAACAAGGAAACTGAGGCCATTGACAAACTTGGTGCTGATTCTTTCCTTGTTTCCAAAGACCCCGAGAAAATGAAGGCTGCTATGGGAACCATGGACTACATCATAGACACAATATCTGCTGCTCATTCCCTGATGCCACTGCTTGGCCTACTGAAGTTGAATGGGAAACTGGTCACTGTAGGGTTGCCTAGCAAGCCCCTTGAGCTCTCTGTCTTTCCATTAGTTGCAGGACGGAAGCTTATCGGAGGGAGTAACATTGGAGGGATGAAAGAGACTCAGGAGATGCTCGATTTCTGCGGCAAGCACAACATAACTGCAGATATTGAGTTGATTAAGATGCATGAAATCAACACGGCCATGGAAAGGCTTCACAAAGCTGATGTGAAATATCGGTTTGTGATTGATGTGGCCAACTCCTTCTCAAGTTTGTAG

Protein sequence

>Msa0568780

MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNSPYKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANSFSSL*