AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934290 MtrunA17_Chr6g0450671 98.148 432 8 0 1 432 1 432 0.0 847
Msa0934290 MtrunA17_Chr6g0453121 50.152 329 149 5 115 429 130 457 6.04e-96 295
Msa0934290 MtrunA17_Chr2g0285791 47.391 230 99 5 115 323 90 318 8.23e-57 190
Msa0934290 MtrunA17_Chr7g0272621 30.351 313 174 10 128 418 128 418 7.39e-33 128
Msa0934290 MtrunA17_Chr1g0196111 30.035 283 172 11 161 428 13 284 6.90e-16 79.3
Msa0934290 MtrunA17_Chr6g0448981 29.934 304 168 16 147 427 106 387 5.77e-14 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934290 AT3G27925.1 88.556 367 40 1 68 432 73 439 0.0 650
Msa0934290 AT3G27925.2 88.556 367 40 1 68 432 73 439 0.0 650
Msa0934290 AT5G39830.1 50.760 329 147 3 115 429 120 447 2.86e-96 296
Msa0934290 AT5G39830.2 48.328 329 141 4 115 429 120 433 2.43e-86 270
Msa0934290 AT4G18370.1 49.130 230 99 5 115 327 92 320 2.78e-59 197
Msa0934290 AT4G18370.2 46.857 175 77 4 114 273 91 264 5.62e-40 144
Msa0934290 AT5G27660.2 32.166 314 168 9 143 428 133 429 2.27e-33 130
Msa0934290 AT5G27660.1 32.166 314 162 10 143 428 128 418 2.81e-31 124
Msa0934290 AT4G18370.3 45.139 144 64 3 115 243 92 235 2.27e-30 117
Msa0934290 AT2G47940.1 28.297 364 199 14 103 428 86 425 4.11e-18 87.0
Msa0934290 AT2G47940.2 28.297 364 199 14 103 428 85 424 4.29e-18 87.0
Msa0934290 AT5G40200.1 28.889 270 165 13 161 414 164 422 5.61e-11 65.1

Find 111 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGGTTCCTCAGGGATC+TGG 0.232760 6_3:+4035310 Msa0934290:CDS
TCACCAATTATCATGTTATC+AGG 0.249166 6_3:+4035368 Msa0934290:CDS
TAGTATCAATTAGATTTATT+TGG 0.253150 6_3:+4039317 Msa0934290:three_prime_UTR
ACCCCTGATAACATGATAAT+TGG 0.283190 6_3:-4035371 None:intergenic
AACATCTGTGAATGGTAATA+AGG 0.295684 6_3:+4037943 Msa0934290:CDS
GTTGATCAATTGGTGAAGTT+TGG 0.310545 6_3:+4037244 Msa0934290:CDS
GCTCCTGCCACTGGTCCAGC+TGG 0.312294 6_3:+4037355 Msa0934290:CDS
AAGATCTAAAACAGCAATAA+TGG 0.315278 6_3:+4039281 Msa0934290:three_prime_UTR
AGCTGTTTATGTGTATTCTA+AGG 0.332636 6_3:+4038912 Msa0934290:three_prime_UTR
GTCAGAAAGTGTTTGCTATT+GGG 0.343361 6_3:+4036471 Msa0934290:CDS
CGCTTACAACTGGAGTTATC+AGG 0.345355 6_3:+4036640 Msa0934290:CDS
ATCTGGGTCAGGTTTCGTTT+GGG 0.345654 6_3:+4035327 Msa0934290:CDS
AGATCAATCTGTGGAGCAAT+TGG 0.346124 6_3:+4037306 Msa0934290:CDS
GTGATGAAGATGAAGAGATT+TGG 0.348289 6_3:-4033709 None:intergenic
GTCTCTGCTGACTTGCTTGT+TGG 0.352804 6_3:+4036449 Msa0934290:CDS
GTTCCTCAGGGATCTGGGTC+AGG 0.354730 6_3:+4035316 Msa0934290:CDS
GGATGTGTTGGAGGTTCCTC+AGG 0.362434 6_3:+4035303 Msa0934290:CDS
TGATGAAGATGAAGAGATTT+GGG 0.367680 6_3:-4033708 None:intergenic
ATTGGCCTGAGCTTGTCTTT+AGG 0.367903 6_3:-4036416 None:intergenic
GTCAGGTTTCGTTTGGGATA+AGG 0.380706 6_3:+4035333 Msa0934290:CDS
GATCTGGGTCAGGTTTCGTT+TGG 0.381779 6_3:+4035326 Msa0934290:CDS
GGGCCACTCCTAGATAGTTC+TGG 0.384530 6_3:+4036853 Msa0934290:CDS
GAAATTAGTTCGGCTGCAAC+TGG 0.387158 6_3:+4036772 Msa0934290:CDS
GCAAACTTGATTCCTAATAT+AGG 0.388647 6_3:-4037280 None:intergenic
AATGGTAATAAGGTTTCTAA+TGG 0.407424 6_3:+4037953 Msa0934290:CDS
GATAGTTCTGGAAACCTCAT+TGG 0.407887 6_3:+4036865 Msa0934290:CDS
ACCTACGATGCAAAAGTTGT+TGG 0.408508 6_3:+4036350 Msa0934290:CDS
GGTCAGAAAGTGTTTGCTAT+TGG 0.408657 6_3:+4036470 Msa0934290:CDS
GTCTTGGATGCTCCTGCCAC+TGG 0.408824 6_3:+4037346 Msa0934290:CDS
TCATCAGACTGCAGCTTCCT+AGG 0.412956 6_3:-4033933 None:intergenic
CTAGATCACACGCTTACAAC+TGG 0.413765 6_3:+4036630 Msa0934290:CDS
CATCATGTTTCGTCGGCCTT+CGG 0.417029 6_3:-4038832 None:intergenic
TTCCCAGCTGGACCAGTGGC+AGG 0.417611 6_3:-4037358 None:intergenic
TTGATCAATTGGTGAAGTTT+GGG 0.427297 6_3:+4037245 Msa0934290:CDS
TTATTATCACTGTGAAGAAT+AGG 0.429178 6_3:+4039046 Msa0934290:three_prime_UTR
TAGTATATATCTACACTGTT+TGG 0.430778 6_3:-4038941 None:intergenic
TCTCCATCTGGTGCATCCTC+TGG 0.434161 6_3:+4036907 Msa0934290:CDS
TCAGGGGTGCTTCGGATCTC+AGG 0.437066 6_3:+4035386 Msa0934290:CDS
TGAGGTTTCCAGAACTATCT+AGG 0.437219 6_3:-4036861 None:intergenic
GCCTTCGGCTCGAGAATGAC+GGG 0.437571 6_3:-4038817 None:intergenic
CAATGGCATTGTTGATCAAT+TGG 0.442333 6_3:+4037234 Msa0934290:CDS
TCATGTTATCAGGGGTGCTT+CGG 0.445830 6_3:+4035378 Msa0934290:CDS
AAACTTACTGCTTTCCCAGC+TGG 0.448518 6_3:-4037370 None:intergenic
CATCAGTCTGTATAACATCT+TGG 0.450735 6_3:-4036804 None:intergenic
AAGATGAAGAGATTTGGGTT+TGG 0.451589 6_3:-4033703 None:intergenic
TGGAGGTTCCTCAGGGATCT+GGG 0.453594 6_3:+4035311 Msa0934290:CDS
GATTGAAGAGCGAGGGAATG+AGG 0.454350 6_3:-4033679 None:intergenic
GGGGTGTAGGAGGAAAAGGG+TGG 0.455201 6_3:-4033757 None:intergenic
AAGGTTACTAGACCTATATT+AGG 0.456851 6_3:+4037268 Msa0934290:CDS
TGCGTTTACTTTGGATGTGT+TGG 0.458605 6_3:+4035291 Msa0934290:CDS
TCTGGTGCATCCTCTGGTGT+TGG 0.464380 6_3:+4036913 Msa0934290:CDS
GGTGTAGGAGGAAAAGGGTG+GGG 0.464956 6_3:-4033755 None:intergenic
AATAGGTTCATTCACTTACA+TGG 0.465613 6_3:+4039063 Msa0934290:three_prime_UTR
ATTCTTGACCAATGTAAAGT+TGG 0.472847 6_3:+4037992 Msa0934290:CDS
CACCAATTATCATGTTATCA+GGG 0.476557 6_3:+4035369 Msa0934290:CDS
TGAAGAGGAAGAAGAAGCTA+TGG 0.476692 6_3:-4033628 None:intergenic
CCAATGTAAAGTTGGTGATA+AGG 0.479540 6_3:+4038000 Msa0934290:CDS
TAGGCAGGATGCGTTTACTT+TGG 0.485183 6_3:+4035282 Msa0934290:intron
GCAGAGACACCAACAGGTAT+TGG 0.491987 6_3:-4036434 None:intergenic
AATTGCTCCACAGATTGATC+TGG 0.493425 6_3:-4037304 None:intergenic
AAACCTCATTGGGATAAATA+CGG 0.500616 6_3:+4036876 Msa0934290:CDS
AGTGGCCCTCCGCTGTTACC+AGG 0.502512 6_3:-4036838 None:intergenic
ATAGTTCTGGAAACCTCATT+GGG 0.505914 6_3:+4036866 Msa0934290:CDS
GTGGAGCAATTGGGAGTAAG+TGG 0.506145 6_3:+4037316 Msa0934290:CDS
ACAGTGTAGATATATACTAT+AGG 0.508685 6_3:+4038945 Msa0934290:three_prime_UTR
GATCAATCTGTGGAGCAATT+GGG 0.509374 6_3:+4037307 Msa0934290:CDS
ACGGCTATATACTCTCCATC+TGG 0.514727 6_3:+4036895 Msa0934290:CDS
AAGTCAGCAGAGACACCAAC+AGG 0.516720 6_3:-4036440 None:intergenic
TGCTTTCCCAGCTGGACCAG+TGG 0.520522 6_3:-4037362 None:intergenic
GGCCTTCGGCTCGAGAATGA+CGG 0.522075 6_3:-4038818 None:intergenic
AGTAAGTGGAGTGCTTGTCT+TGG 0.523157 6_3:+4037330 Msa0934290:CDS
TGTTGATATTCAGGTGATTG+TGG 0.527659 6_3:+4038762 Msa0934290:intron
TCAACAAAGCGTGATTCCTA+TGG 0.532445 6_3:+4037896 Msa0934290:CDS
GCACAGCAACATCCTTGTCT+TGG 0.543843 6_3:-4036379 None:intergenic
CCTTATCACCAACTTTACAT+TGG 0.546658 6_3:-4038000 None:intergenic
GTTTACTTTGGATGTGTTGG+AGG 0.547964 6_3:+4035294 Msa0934290:CDS
GACATCATAACATCTGTGAA+TGG 0.547970 6_3:+4037935 Msa0934290:CDS
GAATGTGGAAATGAGTGAAG+AGG 0.548178 6_3:-4033643 None:intergenic
GGGTGTAGGAGGAAAAGGGT+GGG 0.555938 6_3:-4033756 None:intergenic
CTCCTGCCACTGGTCCAGCT+GGG 0.560697 6_3:+4037356 Msa0934290:CDS
TCAGAGCTCACAGTATCGAC+AGG 0.563331 6_3:-4036946 None:intergenic
ACTGATGCAGCAATTAATCC+TGG 0.563387 6_3:+4036820 Msa0934290:CDS
GATGTGTTGGAGGTTCCTCA+GGG 0.571176 6_3:+4035304 Msa0934290:CDS
GGAAGAGTTGAAGAAGAATG+TGG 0.571372 6_3:-4033658 None:intergenic
TAGCCGTATTTATCCCAATG+AGG 0.585080 6_3:-4036879 None:intergenic
TCAATTGGTGAAGTTTGGGA+AGG 0.586725 6_3:+4037249 Msa0934290:CDS
GTTTGGTGATTGAAGAGCGA+GGG 0.590006 6_3:-4033686 None:intergenic
AGTGTTTGCTATTGGGAACC+CGG 0.591432 6_3:+4036478 Msa0934290:CDS
TTTCTCAAAATAGTGGACTT+CGG 0.593026 6_3:+4036746 Msa0934290:intron
ACACCAGAGGATGCACCAGA+TGG 0.595755 6_3:-4036910 None:intergenic
AAGAAACTTACTTAACAGCA+AGG 0.597017 6_3:-4034013 None:intergenic
TTAGTTATATAAACAACAGA+AGG 0.597978 6_3:-4033990 None:intergenic
ACTTCGGCGAGAAATTAGTT+CGG 0.598072 6_3:+4036762 Msa0934290:CDS
AGTTGCACATCATGTTTCGT+CGG 0.599114 6_3:-4038839 None:intergenic
ATTAATCCTGGTAACAGCGG+AGG 0.605722 6_3:+4036832 Msa0934290:CDS
TTAATCCTGGTAACAGCGGA+GGG 0.614211 6_3:+4036833 Msa0934290:CDS
GGTTTCGTTTGGGATAAGGA+TGG 0.615453 6_3:+4035337 Msa0934290:CDS
ACCAATTATCATGTTATCAG+GGG 0.625604 6_3:+4035370 Msa0934290:CDS
GTCTGTATAACATCTTGGAT+AGG 0.626706 6_3:-4036799 None:intergenic
TTGTGTTGGAGCAAATAGTA+CGG 0.627290 6_3:-4038969 None:intergenic
GGTTTGGTGATTGAAGAGCG+AGG 0.630629 6_3:-4033687 None:intergenic
ACCTAAAATGAGTCTACCAT+AGG 0.641419 6_3:-4037912 None:intergenic
AAGCTCAGGCCAATACCTGT+TGG 0.645438 6_3:+4036425 Msa0934290:CDS
CCTTCGGCTCGAGAATGACG+GGG 0.652759 6_3:-4038816 None:intergenic
GGGTGAGAAAGTAAGTGAGT+TGG 0.670662 6_3:-4033735 None:intergenic
AATAGAAAATCCAACACCAG+AGG 0.677123 6_3:-4036923 None:intergenic
TTTCCAGAACTATCTAGGAG+TGG 0.677655 6_3:-4036856 None:intergenic
GCAATTAATCCTGGTAACAG+CGG 0.687109 6_3:+4036829 Msa0934290:CDS
GTTTGCTCCAGATCAATCTG+TGG 0.693801 6_3:+4037297 Msa0934290:CDS
GTGATTGTGGAAGTGTTGCG+AGG 0.708457 6_3:+4038775 Msa0934290:CDS
AAACCTGACCCAGATCCCTG+AGG 0.760209 6_3:-4035319 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTATATATTT+AGG + chr6_3:4037210-4037229 Msa0934290:intron 0.0%
!! TATAACAAAAATCATAAAAA+TGG - chr6_3:4038302-4038321 None:intergenic 10.0%
!! AAAGATTTAGATTAATGATT+TGG + chr6_3:4034170-4034189 Msa0934290:intron 15.0%
!!! CAATTTTACTAAATCAATTT+TGG - chr6_3:4034295-4034314 None:intergenic 15.0%
!!! TGAAGATTTAAAATTGATTT+TGG + chr6_3:4034337-4034356 Msa0934290:intron 15.0%
!!! TTTTAGTAAAAGTAAGATTA+AGG - chr6_3:4034517-4034536 None:intergenic 15.0%
!! AAAAAATAAACGATTTACTT+TGG + chr6_3:4034848-4034867 Msa0934290:intron 15.0%
!! AAAAATAAACGATTTACTTT+GGG + chr6_3:4034849-4034868 Msa0934290:intron 15.0%
!!! AAAATTGATTTTGTTATGTT+TGG + chr6_3:4035011-4035030 Msa0934290:intron 15.0%
!!! ACTATTTTTATAAGCTATTA+TGG + chr6_3:4035591-4035610 Msa0934290:intron 15.0%
!!! CTATTTTTATAAGCTATTAT+GGG + chr6_3:4035592-4035611 Msa0934290:intron 15.0%
!!! TATTTTTATAAGCTATTATG+GGG + chr6_3:4035593-4035612 Msa0934290:intron 15.0%
!! TAAACTTAAAATCAAGAAAT+TGG + chr6_3:4035796-4035815 Msa0934290:intron 15.0%
!!! ATTTTATATATTTAGGTCAA+TGG + chr6_3:4037217-4037236 Msa0934290:intron 15.0%
!! AAATTTATTCTTATAGAGTT+AGG + chr6_3:4037426-4037445 Msa0934290:intron 15.0%
!!! TTTGATTACAAATTTTTCAA+GGG + chr6_3:4037817-4037836 Msa0934290:intron 15.0%
!! TTAAATTTCTATTATGTTGT+AGG + chr6_3:4037865-4037884 Msa0934290:intron 15.0%
!! TAAATTTCTATTATGTTGTA+GGG + chr6_3:4037866-4037885 Msa0934290:intron 15.0%
!!! TTATGATTTTTGTTATATCT+CGG + chr6_3:4038305-4038324 Msa0934290:intron 15.0%
!! AAACATTAAATAAAGTTCAA+CGG + chr6_3:4038492-4038511 Msa0934290:intron 15.0%
!! AAATAAGATGAAAATATGTA+TGG + chr6_3:4038567-4038586 Msa0934290:intron 15.0%
!!! TCTATTTTCTTTAACTTTTT+GGG - chr6_3:4038675-4038694 None:intergenic 15.0%
!!! TTCTATTTTCTTTAACTTTT+TGG - chr6_3:4038676-4038695 None:intergenic 15.0%
!!! TAAGCAAAAATCAATTTTTT+AGG - chr6_3:4039194-4039213 None:intergenic 15.0%
!! TTAGTTATATAAACAACAGA+AGG - chr6_3:4033993-4034012 None:intergenic 20.0%
!! AACATTCATAAAAACCAAAA+GGG - chr6_3:4034081-4034100 None:intergenic 20.0%
!! CTTTCTTAATAGTTACAAAA+GGG - chr6_3:4034154-4034173 None:intergenic 20.0%
!! TCTTTCTTAATAGTTACAAA+AGG - chr6_3:4034155-4034174 None:intergenic 20.0%
!!! GATTTAGTAAAATTGATTCT+AGG + chr6_3:4034300-4034319 Msa0934290:intron 20.0%
!!! AAAATTGATTTTGGTATGTT+TGG + chr6_3:4034346-4034365 Msa0934290:intron 20.0%
!! AAGGTAAAATGATTTACTTT+GGG - chr6_3:4034498-4034517 None:intergenic 20.0%
!! TAAGGTAAAATGATTTACTT+TGG - chr6_3:4034499-4034518 None:intergenic 20.0%
!!! CAATTGTACTAAATCAATTT+TGG - chr6_3:4034662-4034681 None:intergenic 20.0%
!!! TGATTTTGTAACATTTATTC+TGG + chr6_3:4034764-4034783 Msa0934290:intron 20.0%
!! AAACACATTAGAATTGATTA+TGG - chr6_3:4034909-4034928 None:intergenic 20.0%
!! AACATGTCAAAAATCAAATT+TGG - chr6_3:4034936-4034955 None:intergenic 20.0%
!!! GATTTTGAATAAATTGATTC+AGG - chr6_3:4035214-4035233 None:intergenic 20.0%
!! AACTTAAATTTGTATGTATC+TGG + chr6_3:4035444-4035463 Msa0934290:intron 20.0%
!! ACTTAAATTTGTATGTATCT+GGG + chr6_3:4035445-4035464 Msa0934290:intron 20.0%
!! AATTAATCAAACAACTTATC+AGG + chr6_3:4035478-4035497 Msa0934290:intron 20.0%
!! ATTAATCAAACAACTTATCA+GGG + chr6_3:4035479-4035498 Msa0934290:intron 20.0%
!! ATGATAAAAACTTATGCTAT+AGG - chr6_3:4035555-4035574 None:intergenic 20.0%
!! ATTATAACTTACAAGTACTT+AGG - chr6_3:4035740-4035759 None:intergenic 20.0%
!!! TTTGTTGTATACTTAATCAA+AGG + chr6_3:4035759-4035778 Msa0934290:intron 20.0%
!!! CAAGAAATTGGATATTTTAT+TGG + chr6_3:4035808-4035827 Msa0934290:intron 20.0%
!! TATCAGTGCATTAAATTAAA+TGG - chr6_3:4035842-4035861 None:intergenic 20.0%
!! TTAGGCAATATTATAGATTA+AGG - chr6_3:4035905-4035924 None:intergenic 20.0%
!!! TATCATCTTCTTTTTGTTTT+AGG - chr6_3:4035923-4035942 None:intergenic 20.0%
!! AAACAAAAAGAAGATGATAA+TGG + chr6_3:4035924-4035943 Msa0934290:intron 20.0%
!!! ATTATTTGATTTTTGCAGTT+TGG + chr6_3:4036606-4036625 Msa0934290:intron 20.0%
!!! AAAAATTTGACTCTTTTCTT+AGG - chr6_3:4036714-4036733 None:intergenic 20.0%
!! TAAAACATTTGTATAAAGAG+AGG - chr6_3:4036978-4036997 None:intergenic 20.0%
!!! AAATGTTTTAAAAACTGAAC+CGG + chr6_3:4036988-4037007 Msa0934290:intron 20.0%
!!! GTTTGATTACAAATTTTTCA+AGG + chr6_3:4037816-4037835 Msa0934290:intron 20.0%
!!! TATGATTTTTGTTATATCTC+GGG + chr6_3:4038306-4038325 Msa0934290:intron 20.0%
!!! AATTTTAGTTTGAGTTTCTA+CGG - chr6_3:4038706-4038725 None:intergenic 20.0%
!! CATTCATTAAATGATGTATT+TGG + chr6_3:4039150-4039169 Msa0934290:intron 20.0%
! CAACATTCATAAAAACCAAA+AGG - chr6_3:4034082-4034101 None:intergenic 25.0%
!!! CTTTTGGTTTTTATGAATGT+TGG + chr6_3:4034080-4034099 Msa0934290:intron 25.0%
! CAAATTTATCTCACTAAGTA+GGG - chr6_3:4034251-4034270 None:intergenic 25.0%
! TCAAATTTATCTCACTAAGT+AGG - chr6_3:4034252-4034271 None:intergenic 25.0%
!! TTTGATTGTTGTTGTATGTT+TGG + chr6_3:4034267-4034286 Msa0934290:intron 25.0%
! CATCAAAAGAAGAAAAATCA+AGG - chr6_3:4034584-4034603 None:intergenic 25.0%
! AAGCATTAAGAAAAACAAGA+GGG - chr6_3:4034632-4034651 None:intergenic 25.0%
!!! TTGTTTTTCTTAATGCTTGT+TGG + chr6_3:4034634-4034653 Msa0934290:intron 25.0%
! AAGGTAAAGTGATTTATGTT+AGG + chr6_3:4034802-4034821 Msa0934290:intron 25.0%
!!! GAATTTTTAGATTACCCTTT+TGG + chr6_3:4035119-4035138 Msa0934290:intron 25.0%
!! TTGATTCTTTTGATCGAAAA+AGG + chr6_3:4035176-4035195 Msa0934290:intron 25.0%
! TTTAATGTGTGTATGTGTTT+AGG + chr6_3:4035263-4035282 Msa0934290:intron 25.0%
! TTAATCAAACAACTTATCAG+GGG + chr6_3:4035480-4035499 Msa0934290:intron 25.0%
!! TTATTGAATAAAGGCATGTT+TGG + chr6_3:4035509-4035528 Msa0934290:intron 25.0%
!! GTTTTTATCATTCAAGTGTT+TGG + chr6_3:4035564-4035583 Msa0934290:intron 25.0%
! GACTTATTTGAACTTAACTA+TGG - chr6_3:4035693-4035712 None:intergenic 25.0%
!!! ATCTATCTACTGTCTTTTTT+TGG - chr6_3:4036139-4036158 None:intergenic 25.0%
! ATATGGTTAGGAAATATTAC+CGG - chr6_3:4036500-4036519 None:intergenic 25.0%
! GTAATATTTCCTAACCATAT+TGG + chr6_3:4036500-4036519 Msa0934290:intron 25.0%
! TATTCTCTATGAAATTTCCA+TGG + chr6_3:4036545-4036564 Msa0934290:intron 25.0%
! ATACATGTTTCTCAAAATAG+TGG + chr6_3:4036739-4036758 Msa0934290:intron 25.0%
! TTCAAGAGAATAAAGAAAGA+CGG - chr6_3:4037183-4037202 None:intergenic 25.0%
! GAAAACAGCTTATATCAAAA+TGG - chr6_3:4037543-4037562 None:intergenic 25.0%
!! TCAAAGTAAAGAGACTTTTT+GGG - chr6_3:4037707-4037726 None:intergenic 25.0%
!! ATCAAAGTAAAGAGACTTTT+TGG - chr6_3:4037708-4037727 None:intergenic 25.0%
! AATGGTAATAAGGTTTCTAA+TGG + chr6_3:4037953-4037972 Msa0934290:CDS 25.0%
!! TTTTTACGATTTGACGATTA+TGG - chr6_3:4038153-4038172 None:intergenic 25.0%
!! GCAATTTTCATAAGTTATCA+TGG + chr6_3:4038533-4038552 Msa0934290:intron 25.0%
!!! ATTTTAGTTTGAGTTTCTAC+GGG - chr6_3:4038705-4038724 None:intergenic 25.0%
! TGTTAACCTAGTTTCATAAT+TGG + chr6_3:4038736-4038755 Msa0934290:intron 25.0%
! ACATAACCAATTATGAAACT+AGG - chr6_3:4038745-4038764 None:intergenic 25.0%
! AATTGGTTATGTTGATATTC+AGG + chr6_3:4038753-4038772 Msa0934290:intron 25.0%
!! ATATACACATTTCATTTTGC+AGG + chr6_3:4038883-4038902 Msa0934290:three_prime_UTR 25.0%
!! TATACACATTTCATTTTGCA+GGG + chr6_3:4038884-4038903 Msa0934290:three_prime_UTR 25.0%
! TAGTATATATCTACACTGTT+TGG - chr6_3:4038944-4038963 None:intergenic 25.0%
! ACAGTGTAGATATATACTAT+AGG + chr6_3:4038945-4038964 Msa0934290:three_prime_UTR 25.0%
! TTATTATCACTGTGAAGAAT+AGG + chr6_3:4039046-4039065 Msa0934290:three_prime_UTR 25.0%
!! AAGATCTAAAACAGCAATAA+TGG + chr6_3:4039281-4039300 Msa0934290:three_prime_UTR 25.0%
TGATGAAGATGAAGAGATTT+GGG - chr6_3:4033711-4033730 None:intergenic 30.0%
!!! GTTTTTGGTATAGTGAGTTT+TGG - chr6_3:4033813-4033832 None:intergenic 30.0%
! ACAGAATCAAAGCATGTTTT+TGG - chr6_3:4033828-4033847 None:intergenic 30.0%
AAGAAACTTACTTAACAGCA+AGG - chr6_3:4034016-4034035 None:intergenic 30.0%
GAATGTTGGTATTTGTGTTT+AGG + chr6_3:4034094-4034113 Msa0934290:intron 30.0%
TTGGTATTTGTGTTTAGGTA+GGG + chr6_3:4034099-4034118 Msa0934290:intron 30.0%
!! ATTGATTTTGGTATGTTTGG+AGG + chr6_3:4034349-4034368 Msa0934290:intron 30.0%
ATTATCAATGACAATTCTCG+AGG - chr6_3:4034397-4034416 None:intergenic 30.0%
CAAGCATTAAGAAAAACAAG+AGG - chr6_3:4034633-4034652 None:intergenic 30.0%
GCAACTATAATCAATTCTAG+AGG - chr6_3:4034691-4034710 None:intergenic 30.0%
ATTGATTATAGTTGCACGTT+TGG + chr6_3:4034696-4034715 Msa0934290:intron 30.0%
CACATTAGAATTGATTATGG+AGG - chr6_3:4034906-4034925 None:intergenic 30.0%
TTGGTTATATAGACAACAGA+CGG - chr6_3:4035044-4035063 None:intergenic 30.0%
TCACCAATTATCATGTTATC+AGG + chr6_3:4035368-4035387 Msa0934290:CDS 30.0%
CACCAATTATCATGTTATCA+GGG + chr6_3:4035369-4035388 Msa0934290:CDS 30.0%
ACCAATTATCATGTTATCAG+GGG + chr6_3:4035370-4035389 Msa0934290:CDS 30.0%
TAACTATGGACATAAGCATT+TGG - chr6_3:4035679-4035698 None:intergenic 30.0%
ACTTTGTGCTTTCTTTAGTA+TGG + chr6_3:4035953-4035972 Msa0934290:intron 30.0%
CGATGTGTTAAGTTAGATAT+CGG + chr6_3:4035986-4036005 Msa0934290:intron 30.0%
GACAACACATAATATATGCA+AGG + chr6_3:4036088-4036107 Msa0934290:intron 30.0%
!!! TATCTACTGTCTTTTTTTGG+TGG - chr6_3:4036136-4036155 None:intergenic 30.0%
TTATGAGTAGAAATCGAACT+CGG - chr6_3:4036259-4036278 None:intergenic 30.0%
TAACTAGCATCTCTATTAAC+AGG - chr6_3:4036301-4036320 None:intergenic 30.0%
TATGGTTAGGAAATATTACC+GGG - chr6_3:4036499-4036518 None:intergenic 30.0%
ATATTTCCTAACCATATTGG+TGG + chr6_3:4036503-4036522 Msa0934290:intron 30.0%
CAATACAATATCCACCAATA+TGG - chr6_3:4036517-4036536 None:intergenic 30.0%
!! TTTCTCAAAATAGTGGACTT+CGG + chr6_3:4036746-4036765 Msa0934290:intron 30.0%
AAACCTCATTGGGATAAATA+CGG + chr6_3:4036876-4036895 Msa0934290:CDS 30.0%
!!! TGTTTTAAAGCGCTCAAATT+GGG - chr6_3:4037078-4037097 None:intergenic 30.0%
AGAAAGACGGTATTAATCTA+CGG - chr6_3:4037170-4037189 None:intergenic 30.0%
TTGATCAATTGGTGAAGTTT+GGG + chr6_3:4037245-4037264 Msa0934290:CDS 30.0%
AAGGTTACTAGACCTATATT+AGG + chr6_3:4037268-4037287 Msa0934290:CDS 30.0%
GCAAACTTGATTCCTAATAT+AGG - chr6_3:4037283-4037302 None:intergenic 30.0%
GATTAAGTAGTTTATCCAGA+CGG - chr6_3:4037454-4037473 None:intergenic 30.0%
!! GCTGTTTTCATAAGTTATCT+TGG + chr6_3:4037554-4037573 Msa0934290:intron 30.0%
AACATCTGTGAATGGTAATA+AGG + chr6_3:4037943-4037962 Msa0934290:CDS 30.0%
ATTCTTGACCAATGTAAAGT+TGG + chr6_3:4037992-4038011 Msa0934290:CDS 30.0%
AGCTGTTTATGTGTATTCTA+AGG + chr6_3:4038912-4038931 Msa0934290:three_prime_UTR 30.0%
! TTTTCAATCTCAACTTGTGT+TGG - chr6_3:4038986-4039005 None:intergenic 30.0%
AATAGGTTCATTCACTTACA+TGG + chr6_3:4039063-4039082 Msa0934290:three_prime_UTR 30.0%
! TTTTTGCTTACAATAGTGAC+CGG + chr6_3:4039204-4039223 Msa0934290:intron 30.0%
GTCCACTCAAAAAACATCAA+TGG + chr6_3:4033605-4033624 Msa0934290:exon 35.0%
! AAGATGAAGAGATTTGGGTT+TGG - chr6_3:4033706-4033725 None:intergenic 35.0%
GTGATGAAGATGAAGAGATT+TGG - chr6_3:4033712-4033731 None:intergenic 35.0%
!! CTTTTGTTGTAAATGCTCCT+AGG + chr6_3:4033916-4033935 Msa0934290:CDS 35.0%
!! GAGTTTTGTAATGACCCTTT+TGG + chr6_3:4034064-4034083 Msa0934290:intron 35.0%
GTTGGTATTTGTGTTTAGGT+AGG + chr6_3:4034098-4034117 Msa0934290:intron 35.0%
! CACTTGTTCAACTACCTTTT+AGG + chr6_3:4034463-4034482 Msa0934290:intron 35.0%
TTGGGATACATCTACCTAAA+AGG - chr6_3:4034480-4034499 None:intergenic 35.0%
! TTGATTCTAACTTGCATGCT+TGG + chr6_3:4034975-4034994 Msa0934290:intron 35.0%
!!! ACCCTTTTGGTTTTTGAATG+TGG + chr6_3:4035132-4035151 Msa0934290:intron 35.0%
CCCACATTCAAAAACCAAAA+GGG - chr6_3:4035136-4035155 None:intergenic 35.0%
!!! CCCTTTTGGTTTTTGAATGT+GGG + chr6_3:4035133-4035152 Msa0934290:intron 35.0%
ACCCACATTCAAAAACCAAA+AGG - chr6_3:4035137-4035156 None:intergenic 35.0%
! GAATGTGGGTATTTCTGTTT+AGG + chr6_3:4035147-4035166 Msa0934290:intron 35.0%
! TGGGTATTTCTGTTTAGGAA+GGG + chr6_3:4035152-4035171 Msa0934290:intron 35.0%
ATATGTGTTCAATTCAGCAG+TGG - chr6_3:4035244-4035263 None:intergenic 35.0%
ACCCCTGATAACATGATAAT+TGG - chr6_3:4035374-4035393 None:intergenic 35.0%
GGGTGCTTCTTATTGAATAA+AGG + chr6_3:4035500-4035519 Msa0934290:intron 35.0%
CACATAATATATGCAAGGTC+CGG + chr6_3:4036093-4036112 Msa0934290:intron 35.0%
ACATAATATATGCAAGGTCC+GGG + chr6_3:4036094-4036113 Msa0934290:intron 35.0%
CAGTAGATAGATACACTTGT+TGG + chr6_3:4036147-4036166 Msa0934290:intron 35.0%
AACTGATTACTCCTGTTCAA+TGG + chr6_3:4036231-4036250 Msa0934290:intron 35.0%
TAGAGATGCTAGTTATTTGC+AGG + chr6_3:4036306-4036325 Msa0934290:intron 35.0%
AGAGATGCTAGTTATTTGCA+GGG + chr6_3:4036307-4036326 Msa0934290:intron 35.0%
!! GTCAGAAAGTGTTTGCTATT+GGG + chr6_3:4036471-4036490 Msa0934290:CDS 35.0%
CAATATCCACCAATATGGTT+AGG - chr6_3:4036512-4036531 None:intergenic 35.0%
TGAAATTTCCATGGAAATCC+CGG + chr6_3:4036554-4036573 Msa0934290:intron 35.0%
AACAGTTTACAGTGTTCAAC+CGG - chr6_3:4036576-4036595 None:intergenic 35.0%
! GACTCTTTTCTTAGGAATTG+TGG - chr6_3:4036706-4036725 None:intergenic 35.0%
GTCTGTATAACATCTTGGAT+AGG - chr6_3:4036802-4036821 None:intergenic 35.0%
CATCAGTCTGTATAACATCT+TGG - chr6_3:4036807-4036826 None:intergenic 35.0%
!! ATAGTTCTGGAAACCTCATT+GGG + chr6_3:4036866-4036885 Msa0934290:CDS 35.0%
AATAGAAAATCCAACACCAG+AGG - chr6_3:4036926-4036945 None:intergenic 35.0%
!!! GTTTTAAAAACTGAACCGGA+TGG + chr6_3:4036992-4037011 Msa0934290:intron 35.0%
!!! CTGTTTTAAAGCGCTCAAAT+TGG - chr6_3:4037079-4037098 None:intergenic 35.0%
TGTCTCCTTAAAAACTGAAC+CGG - chr6_3:4037138-4037157 None:intergenic 35.0%
CAATGGCATTGTTGATCAAT+TGG + chr6_3:4037234-4037253 Msa0934290:CDS 35.0%
GTTGATCAATTGGTGAAGTT+TGG + chr6_3:4037244-4037263 Msa0934290:CDS 35.0%
! GTTTATCGCGTCTTCTTTTA+AGG + chr6_3:4037761-4037780 Msa0934290:intron 35.0%
! TCCTATGGTAGACTCATTTT+AGG + chr6_3:4037911-4037930 Msa0934290:CDS 35.0%
ACCTAAAATGAGTCTACCAT+AGG - chr6_3:4037915-4037934 None:intergenic 35.0%
GACATCATAACATCTGTGAA+TGG + chr6_3:4037935-4037954 Msa0934290:CDS 35.0%
CCTTATCACCAACTTTACAT+TGG - chr6_3:4038003-4038022 None:intergenic 35.0%
!! CCAATGTAAAGTTGGTGATA+AGG + chr6_3:4038000-4038019 Msa0934290:CDS 35.0%
!! GTAAAGTTGGTGATAAGGTA+CGG + chr6_3:4038005-4038024 Msa0934290:intron 35.0%
AATTGAATGCCTCAATGTGT+TGG + chr6_3:4038457-4038476 Msa0934290:intron 35.0%
!! TTTAACTTTTTGGGCCTGTT+TGG - chr6_3:4038666-4038685 None:intergenic 35.0%
TGTTGATATTCAGGTGATTG+TGG + chr6_3:4038762-4038781 Msa0934290:intron 35.0%
TTGTGTTGGAGCAAATAGTA+CGG - chr6_3:4038972-4038991 None:intergenic 35.0%
TCCTTACAATAGTGACTAGA+GGG - chr6_3:4039110-4039129 None:intergenic 35.0%
TTCCTTACAATAGTGACTAG+AGG - chr6_3:4039111-4039130 None:intergenic 35.0%
AAATTAAGAACTACTCCCTC+CGG - chr6_3:4039226-4039245 None:intergenic 35.0%
!!! GATGTTTTTTGAGTGGACTG+AGG - chr6_3:4033603-4033622 None:intergenic 40.0%
!!! GGCCATTGATGTTTTTTGAG+TGG - chr6_3:4033610-4033629 None:intergenic 40.0%
TGAAGAGGAAGAAGAAGCTA+TGG - chr6_3:4033631-4033650 None:intergenic 40.0%
GAATGTGGAAATGAGTGAAG+AGG - chr6_3:4033646-4033665 None:intergenic 40.0%
GGAAGAGTTGAAGAAGAATG+TGG - chr6_3:4033661-4033680 None:intergenic 40.0%
!!! TGGTGGTTTTGATGATGAAG+GGG - chr6_3:4033781-4033800 None:intergenic 40.0%
!!! GTGGTGGTTTTGATGATGAA+GGG - chr6_3:4033782-4033801 None:intergenic 40.0%
!!! AGTGGTGGTTTTGATGATGA+AGG - chr6_3:4033783-4033802 None:intergenic 40.0%
!!! AGTTTTGGAAGTGAAAGTGG+TGG - chr6_3:4033798-4033817 None:intergenic 40.0%
!!! GTGAGTTTTGGAAGTGAAAG+TGG - chr6_3:4033801-4033820 None:intergenic 40.0%
TGGAGGTTCTCGATTAGAAT+TGG + chr6_3:4034366-4034385 Msa0934290:intron 40.0%
! CTGGCTAAATAGTGAGTTGA+AGG + chr6_3:4034783-4034802 Msa0934290:intron 40.0%
CACTTACTTCACAGCAATGT+TGG - chr6_3:4035063-4035082 None:intergenic 40.0%
! GTGGGTATTTCTGTTTAGGA+AGG + chr6_3:4035151-4035170 Msa0934290:intron 40.0%
ATGTGTGTATGTGTTTAGGC+AGG + chr6_3:4035267-4035286 Msa0934290:intron 40.0%
TGCGTTTACTTTGGATGTGT+TGG + chr6_3:4035291-4035310 Msa0934290:CDS 40.0%
GTTTACTTTGGATGTGTTGG+AGG + chr6_3:4035294-4035313 Msa0934290:CDS 40.0%
ACAAGTACTTAGGCTGCATT+TGG - chr6_3:4035730-4035749 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+GGG + chr6_3:4036095-4036114 Msa0934290:intron 40.0%
!!! CTACTGTCTTTTTTTGGTGG+TGG - chr6_3:4036133-4036152 None:intergenic 40.0%
! TAGATACACTTGTTGGCACT+TGG + chr6_3:4036154-4036173 Msa0934290:intron 40.0%
TTGTTGGCACTTGGTTTAGT+TGG + chr6_3:4036163-4036182 Msa0934290:intron 40.0%
!!! CTTTTGCATCGTAGGTTGAT+TGG - chr6_3:4036346-4036365 None:intergenic 40.0%
ACCTACGATGCAAAAGTTGT+TGG + chr6_3:4036350-4036369 Msa0934290:CDS 40.0%
! ACCAACAACTTTTGCATCGT+AGG - chr6_3:4036354-4036373 None:intergenic 40.0%
!!! TGTTGGTTTTGACCAAGACA+AGG + chr6_3:4036367-4036386 Msa0934290:CDS 40.0%
!! GGTCAGAAAGTGTTTGCTAT+TGG + chr6_3:4036470-4036489 Msa0934290:CDS 40.0%
ACAGTTTACAGTGTTCAACC+GGG - chr6_3:4036575-4036594 None:intergenic 40.0%
ACTTCGGCGAGAAATTAGTT+CGG + chr6_3:4036762-4036781 Msa0934290:CDS 40.0%
ACTGATGCAGCAATTAATCC+TGG + chr6_3:4036820-4036839 Msa0934290:CDS 40.0%
GCAATTAATCCTGGTAACAG+CGG + chr6_3:4036829-4036848 Msa0934290:CDS 40.0%
TTTCCAGAACTATCTAGGAG+TGG - chr6_3:4036859-4036878 None:intergenic 40.0%
TGAGGTTTCCAGAACTATCT+AGG - chr6_3:4036864-4036883 None:intergenic 40.0%
!! GATAGTTCTGGAAACCTCAT+TGG + chr6_3:4036865-4036884 Msa0934290:CDS 40.0%
TAGCCGTATTTATCCCAATG+AGG - chr6_3:4036882-4036901 None:intergenic 40.0%
AAAACAGTTGAACCATGACC+TGG + chr6_3:4037092-4037111 Msa0934290:intron 40.0%
TCAATTGGTGAAGTTTGGGA+AGG + chr6_3:4037249-4037268 Msa0934290:CDS 40.0%
AATTGCTCCACAGATTGATC+TGG - chr6_3:4037307-4037326 None:intergenic 40.0%
AGATCAATCTGTGGAGCAAT+TGG + chr6_3:4037306-4037325 Msa0934290:CDS 40.0%
GATCAATCTGTGGAGCAATT+GGG + chr6_3:4037307-4037326 Msa0934290:CDS 40.0%
AGGGTGACGAATTTGATTGA+TGG + chr6_3:4037836-4037855 Msa0934290:intron 40.0%
ACGAATTTGATTGATGGAGC+TGG + chr6_3:4037842-4037861 Msa0934290:intron 40.0%
TCAACAAAGCGTGATTCCTA+TGG + chr6_3:4037896-4037915 Msa0934290:CDS 40.0%
GTTACTACAACTCTGCTTTC+AGG - chr6_3:4038336-4038355 None:intergenic 40.0%
ATGTCATGTCCAACACATTG+AGG - chr6_3:4038469-4038488 None:intergenic 40.0%
TAAGCTCAGTCAATCCAAAC+AGG + chr6_3:4038649-4038668 Msa0934290:intron 40.0%
AGTTGCACATCATGTTTCGT+CGG - chr6_3:4038842-4038861 None:intergenic 40.0%
TCCCTCTAGTCACTATTGTA+AGG + chr6_3:4039106-4039125 Msa0934290:intron 40.0%
! GTTTGGTGATTGAAGAGCGA+GGG - chr6_3:4033689-4033708 None:intergenic 45.0%
GGGTGAGAAAGTAAGTGAGT+TGG - chr6_3:4033738-4033757 None:intergenic 45.0%
!!! GTGGTTTTGATGATGAAGGG+GGG - chr6_3:4033779-4033798 None:intergenic 45.0%
!!! GGTGGTTTTGATGATGAAGG+GGG - chr6_3:4033780-4033799 None:intergenic 45.0%
ACTAAGTAGGGTCGACTACT+TGG - chr6_3:4034239-4034258 None:intergenic 45.0%
TTGCACGTTTGGTCTGTGAT+TGG + chr6_3:4034707-4034726 Msa0934290:intron 45.0%
TAGGCAGGATGCGTTTACTT+TGG + chr6_3:4035282-4035301 Msa0934290:intron 45.0%
ATCTGGGTCAGGTTTCGTTT+GGG + chr6_3:4035327-4035346 Msa0934290:CDS 45.0%
! GTCAGGTTTCGTTTGGGATA+AGG + chr6_3:4035333-4035352 Msa0934290:CDS 45.0%
! GGTTTCGTTTGGGATAAGGA+TGG + chr6_3:4035337-4035356 Msa0934290:CDS 45.0%
!! TCATGTTATCAGGGGTGCTT+CGG + chr6_3:4035378-4035397 Msa0934290:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr6_3:4036066-4036085 Msa0934290:intron 45.0%
!!! TGTCTTTTTTTGGTGGTGGC+CGG - chr6_3:4036129-4036148 None:intergenic 45.0%
CACTTGGTTTAGTTGGCACT+TGG + chr6_3:4036170-4036189 Msa0934290:intron 45.0%
! ATTGGCCTGAGCTTGTCTTT+AGG - chr6_3:4036419-4036438 None:intergenic 45.0%
!! AGTGTTTGCTATTGGGAACC+CGG + chr6_3:4036478-4036497 Msa0934290:CDS 45.0%
CTAGATCACACGCTTACAAC+TGG + chr6_3:4036630-4036649 Msa0934290:CDS 45.0%
CGCTTACAACTGGAGTTATC+AGG + chr6_3:4036640-4036659 Msa0934290:CDS 45.0%
GAAATTAGTTCGGCTGCAAC+TGG + chr6_3:4036772-4036791 Msa0934290:CDS 45.0%
ATTAATCCTGGTAACAGCGG+AGG + chr6_3:4036832-4036851 Msa0934290:CDS 45.0%
TTAATCCTGGTAACAGCGGA+GGG + chr6_3:4036833-4036852 Msa0934290:CDS 45.0%
ACGGCTATATACTCTCCATC+TGG + chr6_3:4036895-4036914 Msa0934290:CDS 45.0%
GTTCGACTGATTGTACCATC+CGG - chr6_3:4037010-4037029 None:intergenic 45.0%
AACCAGCACTGTCTACAGTA+TGG + chr6_3:4037034-4037053 Msa0934290:intron 45.0%
AACCATACTGTAGACAGTGC+TGG - chr6_3:4037039-4037058 None:intergenic 45.0%
! GTCGTCCGGTTCAGTTTTTA+AGG + chr6_3:4037130-4037149 Msa0934290:intron 45.0%
GTTTGCTCCAGATCAATCTG+TGG + chr6_3:4037297-4037316 Msa0934290:CDS 45.0%
! AGTAAGTGGAGTGCTTGTCT+TGG + chr6_3:4037330-4037349 Msa0934290:CDS 45.0%
AAACTTACTGCTTTCCCAGC+TGG - chr6_3:4037373-4037392 None:intergenic 45.0%
! TGACGGGGATCTTTTCTTTG+TGG - chr6_3:4038804-4038823 None:intergenic 45.0%
TTGCTTACAATAGTGACCGG+AGG + chr6_3:4039207-4039226 Msa0934290:intron 45.0%
TGCTTACAATAGTGACCGGA+GGG + chr6_3:4039208-4039227 Msa0934290:intron 45.0%
!!! AATAAAAAATAATTCAATTT+TGG + chr6_3:4034552-4034571 Msa0934290:intron 5.0%
!!! TATTAATTTGAATATAAATA+TGG + chr6_3:4038076-4038095 Msa0934290:intron 5.0%
GATTGAAGAGCGAGGGAATG+AGG - chr6_3:4033682-4033701 None:intergenic 50.0%
!! GGTTTGGTGATTGAAGAGCG+AGG - chr6_3:4033690-4033709 None:intergenic 50.0%
!! TTGATGATGAAGGGGGGTGT+AGG - chr6_3:4033773-4033792 None:intergenic 50.0%
TCATCAGACTGCAGCTTCCT+AGG - chr6_3:4033936-4033955 None:intergenic 50.0%
GATGTGTTGGAGGTTCCTCA+GGG + chr6_3:4035304-4035323 Msa0934290:CDS 50.0%
GATCTGGGTCAGGTTTCGTT+TGG + chr6_3:4035326-4035345 Msa0934290:CDS 50.0%
!!! TCTTTTTTTGGTGGTGGCCG+GGG - chr6_3:4036127-4036146 None:intergenic 50.0%
!!! GTCTTTTTTTGGTGGTGGCC+GGG - chr6_3:4036128-4036147 None:intergenic 50.0%
GCACAGCAACATCCTTGTCT+TGG - chr6_3:4036382-4036401 None:intergenic 50.0%
AAGCTCAGGCCAATACCTGT+TGG + chr6_3:4036425-4036444 Msa0934290:CDS 50.0%
GCAGAGACACCAACAGGTAT+TGG - chr6_3:4036437-4036456 None:intergenic 50.0%
AAGTCAGCAGAGACACCAAC+AGG - chr6_3:4036443-4036462 None:intergenic 50.0%
!! GTCTCTGCTGACTTGCTTGT+TGG + chr6_3:4036449-4036468 Msa0934290:CDS 50.0%
GTGTTCAACCGGGATTTCCA+TGG - chr6_3:4036565-4036584 None:intergenic 50.0%
!! TCAGAGCTCACAGTATCGAC+AGG - chr6_3:4036949-4036968 None:intergenic 50.0%
ACAGTTGAACCATGACCTGG+TGG + chr6_3:4037095-4037114 Msa0934290:intron 50.0%
GTGGAGCAATTGGGAGTAAG+TGG + chr6_3:4037316-4037335 Msa0934290:CDS 50.0%
! TTATAGAGTTAGGCGCCGTC+TGG + chr6_3:4037436-4037455 Msa0934290:intron 50.0%
! TTGGTGATAAGGTACGGTGC+TGG + chr6_3:4038011-4038030 Msa0934290:intron 50.0%
!! GTGATTGTGGAAGTGTTGCG+AGG + chr6_3:4038775-4038794 Msa0934290:CDS 50.0%
CATCATGTTTCGTCGGCCTT+CGG - chr6_3:4038835-4038854 None:intergenic 50.0%
GGTGTAGGAGGAAAAGGGTG+GGG - chr6_3:4033758-4033777 None:intergenic 55.0%
GGGTGTAGGAGGAAAAGGGT+GGG - chr6_3:4033759-4033778 None:intergenic 55.0%
! AGGGGGGTGTAGGAGGAAAA+GGG - chr6_3:4033763-4033782 None:intergenic 55.0%
! AAGGGGGGTGTAGGAGGAAA+AGG - chr6_3:4033764-4033783 None:intergenic 55.0%
! ATGATGAAGGGGGGTGTAGG+AGG - chr6_3:4033770-4033789 None:intergenic 55.0%
GGATGTGTTGGAGGTTCCTC+AGG + chr6_3:4035303-4035322 Msa0934290:CDS 55.0%
TTGGAGGTTCCTCAGGGATC+TGG + chr6_3:4035310-4035329 Msa0934290:CDS 55.0%
TGGAGGTTCCTCAGGGATCT+GGG + chr6_3:4035311-4035330 Msa0934290:CDS 55.0%
AAACCTGACCCAGATCCCTG+AGG - chr6_3:4035322-4035341 None:intergenic 55.0%
!! GCTTCGGATCTCAGGTTGGT+AGG + chr6_3:4035394-4035413 Msa0934290:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG - chr6_3:4036064-4036083 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + chr6_3:4036061-4036080 Msa0934290:intron 55.0%
!! CGAACTCGGTGCCATTGAAC+AGG - chr6_3:4036245-4036264 None:intergenic 55.0%
ACGCGCCTAAAGACAAGCTC+AGG + chr6_3:4036411-4036430 Msa0934290:CDS 55.0%
GGGCCACTCCTAGATAGTTC+TGG + chr6_3:4036853-4036872 Msa0934290:CDS 55.0%
TCTCCATCTGGTGCATCCTC+TGG + chr6_3:4036907-4036926 Msa0934290:CDS 55.0%
ACACCAGAGGATGCACCAGA+TGG - chr6_3:4036913-4036932 None:intergenic 55.0%
TCTGGTGCATCCTCTGGTGT+TGG + chr6_3:4036913-4036932 Msa0934290:CDS 55.0%
GGGGTGTAGGAGGAAAAGGG+TGG - chr6_3:4033760-4033779 None:intergenic 60.0%
GTTCCTCAGGGATCTGGGTC+AGG + chr6_3:4035316-4035335 Msa0934290:CDS 60.0%
!! TCAGGGGTGCTTCGGATCTC+AGG + chr6_3:4035386-4035405 Msa0934290:CDS 60.0%
GGGTGCTTCGGATCTCAGGT+TGG + chr6_3:4035390-4035409 Msa0934290:intron 60.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr6_3:4036107-4036126 Msa0934290:intron 60.0%
CCAGCAAGACCACCAGGTCA+TGG - chr6_3:4037107-4037126 None:intergenic 60.0%
! CCATGACCTGGTGGTCTTGC+TGG + chr6_3:4037104-4037123 Msa0934290:intron 60.0%
GACGAACCAGCAAGACCACC+AGG - chr6_3:4037113-4037132 None:intergenic 60.0%
!! GGTCTTGCTGGTTCGTCGTC+CGG + chr6_3:4037116-4037135 Msa0934290:intron 60.0%
GTCTTGGATGCTCCTGCCAC+TGG + chr6_3:4037346-4037365 Msa0934290:CDS 60.0%
TGCTTTCCCAGCTGGACCAG+TGG - chr6_3:4037365-4037384 None:intergenic 60.0%
! CCTTCGGCTCGAGAATGACG+GGG - chr6_3:4038819-4038838 None:intergenic 60.0%
! GCCTTCGGCTCGAGAATGAC+GGG - chr6_3:4038820-4038839 None:intergenic 60.0%
! GGCCTTCGGCTCGAGAATGA+CGG - chr6_3:4038821-4038840 None:intergenic 60.0%
AGTGGCCCTCCGCTGTTACC+AGG - chr6_3:4036841-4036860 None:intergenic 65.0%
CTCCTGCCACTGGTCCAGCT+GGG + chr6_3:4037356-4037375 Msa0934290:CDS 65.0%
TTCCCAGCTGGACCAGTGGC+AGG - chr6_3:4037361-4037380 None:intergenic 65.0%
CCCCGTCATTCTCGAGCCGA+AGG + chr6_3:4038816-4038835 Msa0934290:CDS 65.0%
GGTGGCCGGGGTTTGAACCC+CGG - chr6_3:4036115-4036134 None:intergenic 70.0%
GCTCCTGCCACTGGTCCAGC+TGG + chr6_3:4037355-4037374 Msa0934290:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 4033591 4039337 4033591 ID=Msa0934290;Name=Msa0934290
chr6_3 mRNA 4033591 4039337 4033591 ID=Msa0934290-mRNA-1;Parent=Msa0934290;Name=Msa0934290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=33|1|1|1|0.87|0.77|9|356|432
chr6_3 exon 4033591 4034024 4033591 ID=Msa0934290-mRNA-1:exon:1214;Parent=Msa0934290-mRNA-1
chr6_3 exon 4035285 4035407 4035285 ID=Msa0934290-mRNA-1:exon:1215;Parent=Msa0934290-mRNA-1
chr6_3 exon 4036328 4036499 4036328 ID=Msa0934290-mRNA-1:exon:1216;Parent=Msa0934290-mRNA-1
chr6_3 exon 4036624 4036661 4036624 ID=Msa0934290-mRNA-1:exon:1217;Parent=Msa0934290-mRNA-1
chr6_3 exon 4036759 4036957 4036759 ID=Msa0934290-mRNA-1:exon:1218;Parent=Msa0934290-mRNA-1
chr6_3 exon 4037232 4037384 4037232 ID=Msa0934290-mRNA-1:exon:1219;Parent=Msa0934290-mRNA-1
chr6_3 exon 4037887 4038021 4037887 ID=Msa0934290-mRNA-1:exon:1220;Parent=Msa0934290-mRNA-1
chr6_3 exon 4038775 4039113 4038775 ID=Msa0934290-mRNA-1:exon:1221;Parent=Msa0934290-mRNA-1
chr6_3 exon 4039243 4039337 4039243 ID=Msa0934290-mRNA-1:exon:1222;Parent=Msa0934290-mRNA-1
chr6_3 five_prime_UTR 4033591 4033623 4033591 ID=Msa0934290-mRNA-1:five_prime_utr;Parent=Msa0934290-mRNA-1
chr6_3 CDS 4033624 4034024 4033624 ID=Msa0934290-mRNA-1:cds;Parent=Msa0934290-mRNA-1
chr6_3 CDS 4035285 4035407 4035285 ID=Msa0934290-mRNA-1:cds;Parent=Msa0934290-mRNA-1
chr6_3 CDS 4036328 4036499 4036328 ID=Msa0934290-mRNA-1:cds;Parent=Msa0934290-mRNA-1
chr6_3 CDS 4036624 4036661 4036624 ID=Msa0934290-mRNA-1:cds;Parent=Msa0934290-mRNA-1
chr6_3 CDS 4036759 4036957 4036759 ID=Msa0934290-mRNA-1:cds;Parent=Msa0934290-mRNA-1
chr6_3 CDS 4037232 4037384 4037232 ID=Msa0934290-mRNA-1:cds;Parent=Msa0934290-mRNA-1
chr6_3 CDS 4037887 4038021 4037887 ID=Msa0934290-mRNA-1:cds;Parent=Msa0934290-mRNA-1
chr6_3 CDS 4038775 4038852 4038775 ID=Msa0934290-mRNA-1:cds;Parent=Msa0934290-mRNA-1
chr6_3 three_prime_UTR 4038853 4039113 4038853 ID=Msa0934290-mRNA-1:three_prime_utr;Parent=Msa0934290-mRNA-1
chr6_3 three_prime_UTR 4039243 4039337 4039243 ID=Msa0934290-mRNA-1:three_prime_utr;Parent=Msa0934290-mRNA-1
Gene Sequence

>Msa0934290

ATGGCCATAGCTTCTTCTTCCTCTTCACTCATTTCCACATTCTTCTTCAACTCTTCCTCATTCCCTCGCTCTTCAATCACCAAACCCAAATCTCTTCATCTTCATCACACACCAACTCACTTACTTTCTCACCCCACCCTTTTCCTCCTACACCCCCCTTCATCATCAAAACCACCACTTTCACTTCCAAAACTCACTATACCAAAAACATGCTTTGATTCTGTACTCATTCTATGTACTTCACTTGCACTATCTTTGACTCTCTTCATTTCAAATGTTGATTCAGCTTCTGCTTTTGTTGTAAATGCTCCTAGGAAGCTGCAGTCTGATGAACTTGCTACTGTTCGTTTGTTTCAAGAGAATACTCCTTCTGTTGTTTATATAACTAACCTTGCTGTTAAGCAGGATGCGTTTACTTTGGATGTGTTGGAGGTTCCTCAGGGATCTGGGTCAGGTTTCGTTTGGGATAAGGATGGTCATATAGTCACCAATTATCATGTTATCAGGGGTGCTTCGGATCTCAGGGTCACTCTTGCTGACCAATCAACCTACGATGCAAAAGTTGTTGGTTTTGACCAAGACAAGGATGTTGCTGTGCTGCGTGTTGACGCGCCTAAAGACAAGCTCAGGCCAATACCTGTTGGTGTCTCTGCTGACTTGCTTGTTGGTCAGAAAGTGTTTGCTATTGGGAACCCGTTTGGACTAGATCACACGCTTACAACTGGAGTTATCAGTGGACTTCGGCGAGAAATTAGTTCGGCTGCAACTGGTCGTCCTATCCAAGATGTTATACAGACTGATGCAGCAATTAATCCTGGTAACAGCGGAGGGCCACTCCTAGATAGTTCTGGAAACCTCATTGGGATAAATACGGCTATATACTCTCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCTGTCGATACTGTCAATGGCATTGTTGATCAATTGGTGAAGTTTGGGAAGGTTACTAGACCTATATTAGGAATCAAGTTTGCTCCAGATCAATCTGTGGAGCAATTGGGAGTAAGTGGAGTGCTTGTCTTGGATGCTCCTGCCACTGGTCCAGCTGGGAAAGCAGGCTTACAATCAACAAAGCGTGATTCCTATGGTAGACTCATTTTAGGTGACATCATAACATCTGTGAATGGTAATAAGGTTTCTAATGGAAGTGATTTGTACAGAATTCTTGACCAATGTAAAGTTGGTGATAAGGTGATTGTGGAAGTGTTGCGAGGCGACCACAAAGAAAAGATCCCCGTCATTCTCGAGCCGAAGGCCGACGAAACATGA

Protein sequence

>Msa0934290

MAIASSSSSLISTFFFNSSSFPRSSITKPKSLHLHHTPTHLLSHPTLFLLHPPSSSKPPLSLPKLTIPKTCFDSVLILCTSLALSLTLFISNVDSASAFVVNAPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQSTYDAKVVGFDQDKDVAVLRVDAPKDKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPATGPAGKAGLQSTKRDSYGRLILGDIITSVNGNKVSNGSDLYRILDQCKVGDKVIVEVLRGDHKEKIPVILEPKADET*