AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129120 MtrunA17_Chr7g0273731 91.164 464 22 1 1 464 84 528 0.0 879
Msa1129120 MtrunA17_Chr7g0273791 80.603 464 71 1 1 464 1 445 0.0 788
Msa1129120 MtrunA17_Chr7g0273781 78.664 464 80 1 1 464 34 478 0.0 778
Msa1129120 MtrunA17_Chr5g0433641 74.839 465 97 2 1 464 1 446 0.0 730
Msa1129120 MtrunA17_Chr7g0273761 74.409 465 98 3 2 464 374 819 0.0 724
Msa1129120 MtrunA17_Chr7g0273761 74.000 300 77 1 166 464 32 331 8.58e-162 478
Msa1129120 MtrunA17_Chr7g0273721 73.333 465 103 3 2 464 3 448 0.0 719
Msa1129120 MtrunA17_Chr1g0165671 56.550 458 172 6 6 460 23 456 0.0 533
Msa1129120 MtrunA17_Chr1g0165661 52.183 458 194 6 6 460 5 440 1.23e-169 485
Msa1129120 MtrunA17_Chr1g0191081 53.879 464 190 5 3 464 11 452 2.98e-169 484
Msa1129120 MtrunA17_Chr1g0165681 51.965 458 195 6 6 460 5 440 1.52e-168 482
Msa1129120 MtrunA17_Chr1g0165711 47.712 459 175 7 6 463 5 399 3.20e-142 414
Msa1129120 MtrunA17_Chr7g0273741 82.993 147 25 0 1 147 1 147 1.77e-84 256
Msa1129120 MtrunA17_Chr6g0471381 54.435 248 105 5 217 460 6 249 3.54e-84 260
Msa1129120 MtrunA17_Chr7g0273701 72.500 160 44 0 305 464 1 160 8.96e-82 250
Msa1129120 MtrunA17_Chr3g0098961 76.871 147 34 0 1 147 4 150 8.21e-78 240
Msa1129120 MtrunA17_Chr3g0132001 32.143 448 266 10 10 452 14 428 2.19e-68 224
Msa1129120 MtrunA17_Chr8g0386141 32.353 408 242 10 8 409 5 384 7.36e-68 223
Msa1129120 MtrunA17_Chr7g0224391 31.514 403 246 7 13 411 19 395 1.88e-65 217
Msa1129120 MtrunA17_Chr6g0471971 46.667 240 96 6 181 414 1 214 2.20e-65 209
Msa1129120 MtrunA17_Chr6g0471371 63.087 149 55 0 6 154 5 153 3.15e-65 207
Msa1129120 MtrunA17_Chr1g0165741 63.380 142 52 0 6 147 5 146 2.03e-62 199
Msa1129120 MtrunA17_Chr8g0353421 62.992 127 47 0 3 129 2 128 1.28e-57 186
Msa1129120 MtrunA17_Chr3g0141851 30.170 411 241 12 18 415 20 397 2.30e-51 180
Msa1129120 MtrunA17_Chr2g0306321 29.158 463 285 15 8 456 24 457 3.22e-48 172
Msa1129120 MtrunA17_Chr7g0273691 74.227 97 24 1 185 280 1 97 5.35e-45 152
Msa1129120 MtrunA17_Chr4g0027071 27.897 466 280 15 17 457 19 453 4.05e-43 158
Msa1129120 MtrunA17_Chr6g0471891 44.444 198 81 5 251 445 1 172 1.79e-42 150
Msa1129120 MtrunA17_Chr2g0334001 27.511 458 288 13 6 452 1 425 3.34e-42 155
Msa1129120 MtrunA17_Chr4g0001861 27.945 433 250 12 42 452 34 426 1.43e-41 153
Msa1129120 MtrunA17_Chr3g0113821 27.802 464 285 14 9 455 4 434 2.32e-39 147
Msa1129120 MtrunA17_Chr7g0270771 28.115 313 174 7 6 310 1 270 5.63e-38 139
Msa1129120 MtrunA17_Chr8g0371821 26.407 462 292 14 6 456 1 425 7.40e-38 143
Msa1129120 MtrunA17_Chr2g0283361 27.252 444 272 13 31 453 25 438 1.41e-32 129
Msa1129120 MtrunA17_Chr7g0253501 27.536 483 265 21 17 454 9 451 3.81e-32 127
Msa1129120 MtrunA17_Chr7g0253531 26.752 471 268 19 17 447 9 442 1.72e-31 125
Msa1129120 MtrunA17_Chr4g0072041 25.223 448 274 14 36 454 39 454 1.26e-30 123
Msa1129120 MtrunA17_Chr3g0087401 25.000 428 261 12 18 413 10 409 2.09e-30 122
Msa1129120 MtrunA17_Chr7g0273681 92.308 52 4 0 92 143 1 52 3.49e-29 108
Msa1129120 MtrunA17_Chr3g0106691 27.251 422 265 13 4 408 52 448 4.10e-29 119
Msa1129120 MtrunA17_Chr1g0165721 57.292 96 40 1 366 460 1 96 1.17e-27 106
Msa1129120 MtrunA17_Chr7g0253541 25.407 492 275 22 18 460 12 460 1.33e-27 114
Msa1129120 MtrunA17_Chr6g0470591 25.822 426 261 16 60 459 66 462 1.52e-27 114
Msa1129120 MtrunA17_Chr4g0054081 23.778 450 279 14 36 454 34 450 2.80e-27 114
Msa1129120 MtrunA17_Chr2g0311401 28.000 300 197 8 166 454 6 297 3.64e-27 110
Msa1129120 MtrunA17_Chr7g0252731 25.537 419 254 14 3 409 8 380 1.80e-26 111
Msa1129120 MtrunA17_Chr1g0165731 42.727 110 59 3 181 288 1 108 4.86e-25 99.4
Msa1129120 MtrunA17_Chr5g0442691 23.093 472 294 16 8 444 31 468 6.75e-25 107
Msa1129120 MtrunA17_Chr5g0442701 23.517 472 292 16 8 444 8 445 3.59e-24 104
Msa1129120 MtrunA17_Chr3g0106711 31.081 222 122 6 4 217 6 204 1.32e-23 99.4
Msa1129120 MtrunA17_Chr3g0106661 25.988 481 285 17 17 459 17 464 6.11e-23 101
Msa1129120 MtrunA17_Chr3g0106721 26.184 359 221 10 17 358 17 348 2.09e-22 99.4
Msa1129120 MtrunA17_Chr5g0442721 22.912 419 258 12 62 447 64 450 3.23e-22 99.0
Msa1129120 MtrunA17_Chr8g0354371 22.796 465 272 17 24 459 31 437 2.11e-20 93.2
Msa1129120 MtrunA17_Chr3g0095731 23.009 452 280 16 43 460 43 460 8.31e-20 91.7
Msa1129120 MtrunA17_Chr3g0095721 23.239 426 264 13 65 460 72 464 4.96e-19 89.4
Msa1129120 MtrunA17_Chr7g0273671 88.372 43 5 0 1 43 1 43 6.45e-19 80.1
Msa1129120 MtrunA17_Chr3g0123061 22.101 457 283 18 16 457 11 409 8.35e-19 88.2
Msa1129120 MtrunA17_Chr4g0004691 28.108 185 108 3 20 204 14 173 2.08e-18 83.2
Msa1129120 MtrunA17_Chr3g0134091 26.724 464 261 22 24 458 30 443 3.45e-18 86.7
Msa1129120 MtrunA17_Chr3g0134121 26.667 450 262 22 25 449 31 437 6.25e-18 86.3
Msa1129120 MtrunA17_Chr3g0134061 26.464 427 250 19 37 438 42 429 8.10e-18 85.9
Msa1129120 MtrunA17_Chr3g0106761 25.613 367 227 13 60 408 9 347 9.09e-18 85.1
Msa1129120 MtrunA17_Chr4g0010331 23.438 448 282 17 24 455 25 427 3.73e-17 83.6
Msa1129120 MtrunA17_Chr6g0471981 64.706 51 18 0 101 151 1 51 4.40e-17 75.5
Msa1129120 MtrunA17_Chr3g0106741 29.297 256 164 9 166 408 127 378 1.34e-16 81.6
Msa1129120 MtrunA17_Chr8g0376911 22.222 486 264 21 16 457 9 424 2.47e-16 80.9
Msa1129120 MtrunA17_Chr4g0010361 25.721 416 245 20 24 416 25 399 5.16e-16 80.1
Msa1129120 MtrunA17_Chr4g0010311 24.508 457 272 20 24 455 25 433 6.73e-16 79.7
Msa1129120 MtrunA17_Chr8g0374641 22.010 418 257 15 24 418 30 401 1.08e-15 79.0
Msa1129120 MtrunA17_Chr1g0199561 22.197 437 280 15 16 427 9 410 2.51e-15 77.8
Msa1129120 MtrunA17_Chr8g0376901 23.256 473 274 19 16 456 9 424 6.30e-15 76.6
Msa1129120 MtrunA17_Chr5g0414431 55.357 56 20 1 52 107 2 52 4.24e-14 66.6
Msa1129120 MtrunA17_Chr7g0224131 22.819 447 289 15 24 455 25 430 5.22e-14 73.9
Msa1129120 MtrunA17_Chr4g0053111 21.861 462 282 17 24 455 28 440 1.23e-13 72.8
Msa1129120 MtrunA17_Chr4g0010351 25.392 319 189 15 24 328 25 308 4.29e-13 70.5
Msa1129120 MtrunA17_Chr3g0106631 28.571 140 95 3 167 302 2 140 2.27e-11 62.4
Msa1129120 MtrunA17_Chr2g0311411 31.532 111 72 3 6 116 1 107 7.26e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129120 AT5G17540.1 47.210 466 217 9 3 463 2 443 1.68e-141 414
Msa1129120 AT3G03480.1 45.161 465 225 9 2 461 11 450 1.46e-135 398
Msa1129120 AT3G48720.1 32.353 408 246 10 8 411 7 388 1.60e-69 228
Msa1129120 AT5G41040.1 32.108 408 245 8 10 411 33 414 6.58e-65 216
Msa1129120 AT5G63560.1 33.907 407 233 10 10 411 9 384 7.61e-65 215
Msa1129120 AT5G41040.2 32.108 408 245 8 10 411 17 398 8.09e-65 216
Msa1129120 AT1G27620.1 30.751 413 243 12 13 415 12 391 6.58e-52 181
Msa1129120 AT1G03390.1 30.222 450 270 15 8 444 23 441 1.04e-47 171
Msa1129120 AT5G48930.1 27.451 459 282 14 17 459 10 433 2.18e-42 155
Msa1129120 AT2G19070.1 28.477 453 262 15 36 458 29 449 4.05e-41 152
Msa1129120 AT2G40230.1 29.024 410 247 12 17 412 12 391 8.29e-39 146
Msa1129120 AT3G62160.1 26.316 418 250 12 6 409 1 374 3.95e-37 141
Msa1129120 AT1G28680.1 26.697 442 286 11 31 459 27 443 2.32e-35 137
Msa1129120 AT5G57840.1 27.044 477 283 15 10 461 3 439 4.13e-35 136
Msa1129120 AT1G28680.2 28.653 349 217 9 31 372 27 350 3.52e-32 127
Msa1129120 AT1G65450.1 26.291 426 266 13 3 410 8 403 5.48e-31 124
Msa1129120 AT5G07080.1 25.527 427 267 11 3 408 7 403 1.70e-30 123
Msa1129120 AT3G47170.1 24.280 486 306 17 8 460 10 466 1.68e-28 117
Msa1129120 AT2G25150.1 27.934 426 253 17 5 408 7 400 2.42e-27 114
Msa1129120 AT2G23510.1 26.066 422 267 16 2 408 7 398 1.88e-25 108
Msa1129120 AT1G32910.1 24.103 390 236 12 63 428 63 416 2.77e-21 96.7
Msa1129120 AT3G50280.1 25.537 419 247 17 24 418 28 405 3.09e-20 93.2
Msa1129120 AT1G78990.1 22.779 439 280 12 43 460 45 445 1.87e-19 90.9
Msa1129120 AT3G26040.1 22.747 466 281 18 16 455 9 421 6.59e-19 89.4
Msa1129120 AT1G24430.1 23.218 435 261 15 44 460 41 420 1.55e-18 88.2
Msa1129120 AT4G31910.1 24.454 458 286 18 26 454 27 453 3.26e-18 87.4
Msa1129120 AT5G07850.1 25.732 478 278 20 14 459 17 449 1.12e-17 85.5
Msa1129120 AT5G07860.1 24.893 466 289 18 14 458 17 442 3.66e-17 84.0
Msa1129120 AT5G16410.1 22.283 368 229 12 65 411 91 422 4.77e-17 84.0
Msa1129120 AT3G50270.1 23.227 409 257 13 36 418 33 410 6.35e-16 80.1
Msa1129120 AT5G47980.1 24.569 464 278 21 14 452 9 425 5.34e-15 77.4
Msa1129120 AT1G24420.2 22.500 400 211 12 76 441 76 410 2.52e-14 75.1
Msa1129120 AT1G24420.1 22.500 400 211 12 76 441 76 410 2.52e-14 75.1
Msa1129120 AT5G07870.1 23.517 472 304 19 14 459 17 457 1.55e-12 69.7
Msa1129120 AT1G65450.3 23.729 295 200 9 179 460 3 285 2.68e-12 67.8
Msa1129120 AT5G47950.1 24.735 283 167 9 16 294 12 252 6.71e-12 67.8

Find 135 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATAAAGATTGATGTATT+TGG 0.213067 7_3:-81077854 None:intergenic
GCATGTCTAAGAACTTTAAT+AGG 0.218647 7_3:-81074855 None:intergenic
AGCAGATCTTATGGTTATTA+AGG 0.242062 7_3:+81077412 Msa1129120:CDS
AAGTTCAAAGAAGTGGATTT+TGG 0.248604 7_3:+81077491 Msa1129120:CDS
ATGTAACACTTGATCAATTT+GGG 0.256344 7_3:+81074997 Msa1129120:CDS
ACTTGACAAGATTTAGTTAC+AGG 0.266265 7_3:-81074336 None:intergenic
TGTAGTATCTTCTTCCTTGA+TGG 0.282783 7_3:-81077030 None:intergenic
ATCCCACATAAGAATGTAAA+AGG 0.288527 7_3:+81077584 Msa1129120:CDS
GATGTAACACTTGATCAATT+TGG 0.298925 7_3:+81074996 Msa1129120:CDS
TGCTTGGCAACGACACAATA+AGG 0.312592 7_3:+81074514 Msa1129120:five_prime_UTR
AAACTGGCACATGAAATTTA+AGG 0.316301 7_3:-81074449 None:intergenic
ATCCATTTGCAGGAAGGATT+AGG 0.320371 7_3:+81074904 Msa1129120:CDS
ATGAATATTATTGGGAAAAC+TGG 0.323391 7_3:-81074465 None:intergenic
CCATTCAACCTGTATGGAAT+AGG 0.323735 7_3:+81076931 Msa1129120:CDS
GCATTCTGTAGCAGATCTTA+TGG 0.324794 7_3:+81077403 Msa1129120:CDS
TCCATTTGCAGGAAGGATTA+GGG 0.331515 7_3:+81074905 Msa1129120:CDS
TCGCCACTTGTTGGATATTA+CGG 0.334686 7_3:+81077263 Msa1129120:CDS
TTTGGGTGATGAATATTATT+GGG 0.337019 7_3:-81074473 None:intergenic
CATAGCTGCGCTTCGTCTCT+TGG 0.337255 7_3:+81077091 Msa1129120:CDS
AAGCTTTGTGGAAACTCATT+AGG 0.345233 7_3:+81077326 Msa1129120:CDS
AACTAGGAACCATTTGCTTT+AGG 0.348486 7_3:-81077701 None:intergenic
CCCGCGGTGGTGACAGCTGC+CGG 0.349688 7_3:-81077302 None:intergenic
GCAGCTGGTGGCACCAGCTC+TGG 0.355758 7_3:-81074717 None:intergenic
GTGTATTACTATCCATTTGC+AGG 0.355829 7_3:+81074894 Msa1129120:CDS
CACAAAAGCATTGCAGTTAG+AGG 0.365161 7_3:+81077178 Msa1129120:CDS
ATTCTTATGTGGGATGATAT+AGG 0.365851 7_3:-81077576 None:intergenic
GGATGGGGTGAGGCGGTGTA+TGG 0.375232 7_3:+81077512 Msa1129120:CDS
GGGTGCTGGGCGTAAGTTGA+TGG 0.381264 7_3:+81074929 Msa1129120:CDS
CATGAATGCCTGGGCAGAAA+TGG 0.382624 7_3:+81076887 Msa1129120:CDS
CTCCGCACTGTGAACAATAA+TGG 0.390252 7_3:-81074687 None:intergenic
GGATCACAAATAATTATTTA+CGG 0.390810 7_3:-81077908 None:intergenic
CATGTCTAAGAACTTTAATA+GGG 0.395837 7_3:-81074854 None:intergenic
CATTCAACCTGTATGGAATA+GGG 0.408225 7_3:+81076932 Msa1129120:CDS
TATTCATGAACACGTGGAAT+AGG 0.410021 7_3:-81074398 None:intergenic
TCCCTAATCCTTCCTGCAAA+TGG 0.413944 7_3:-81074906 None:intergenic
GTTCTTTGAAGCATGGGAAT+GGG 0.414516 7_3:-81075034 None:intergenic
AACCTTCCATTCAACCTGTA+TGG 0.427456 7_3:+81076925 Msa1129120:CDS
GGAAGGATTAGGGAGGGTGC+TGG 0.433324 7_3:+81074915 Msa1129120:CDS
TGAAACTATTCATGAATGCC+TGG 0.438374 7_3:+81076877 Msa1129120:CDS
TCCCTTCACCACACCGGTCA+AGG 0.439345 7_3:+81076371 Msa1129120:CDS
GAACTTCTATACGATGTTCC+AGG 0.439564 7_3:+81075053 Msa1129120:CDS
TTTACCTGTATGAGTCGAAT+GGG 0.448569 7_3:-81075098 None:intergenic
CAGCTCCATCGCTCATTGTA+TGG 0.451440 7_3:-81076851 None:intergenic
CAAAATTAACCTAAAGCAAA+TGG 0.452519 7_3:+81077692 Msa1129120:exon
CCTATTCCATACAGGTTGAA+TGG 0.453015 7_3:-81076931 None:intergenic
GTTTATATCACATGCTTACA+TGG 0.453078 7_3:+81074545 Msa1129120:five_prime_UTR
ACCACCGCGGGGAAGCTTTG+TGG 0.458585 7_3:+81077314 Msa1129120:CDS
CTGGTGGCACCAGCTCTGGT+TGG 0.466144 7_3:-81074713 None:intergenic
TGACGATAGATAAACATCAT+AGG 0.470860 7_3:-81074807 None:intergenic
AAGAATGTAAAAGGAGAAGA+AGG 0.472789 7_3:+81077593 Msa1129120:CDS
GCCCTTGACCGGTGTGGTGA+AGG 0.473028 7_3:-81076373 None:intergenic
TCCTCGAGCCATTTCTGCCC+AGG 0.474546 7_3:-81076895 None:intergenic
AGAATCTCCCTATTCCATAC+AGG 0.480630 7_3:-81076939 None:intergenic
TCAATAATTAGTTCTGATCC+TGG 0.483822 7_3:-81075071 None:intergenic
TTCCATACAGGTTGAATGGA+AGG 0.484244 7_3:-81076927 None:intergenic
GTCAACCATTCGCCACTTGT+TGG 0.484423 7_3:+81077254 Msa1129120:CDS
AGTTCTTTGAAGCATGGGAA+TGG 0.487665 7_3:-81075035 None:intergenic
ATATAGGCTGCTCCAGGAAA+AGG 0.487690 7_3:-81077560 None:intergenic
TGGGGTGAGGCGGTGTATGG+TGG 0.491453 7_3:+81077515 Msa1129120:CDS
GCGGAGGAGCCAACCAGAGC+TGG 0.493190 7_3:+81074704 Msa1129120:CDS
CCGCCCCATTCGACTCATAC+AGG 0.494546 7_3:+81075094 Msa1129120:CDS
AAATATGTTCGTATTCATGA+TGG 0.495591 7_3:-81076995 None:intergenic
CCCTTGACCGGTGTGGTGAA+GGG 0.498111 7_3:-81076372 None:intergenic
CCGGCAGCTGTCACCACCGC+GGG 0.498263 7_3:+81077302 Msa1129120:CDS
ATGGAATAGGGAGATTCTAA+TGG 0.500842 7_3:+81076944 Msa1129120:CDS
ATACAGGAATTGAAAAGATA+AGG 0.505757 7_3:-81074569 None:intergenic
TCGTATAAAGTTCAAAGAAG+TGG 0.508593 7_3:+81077484 Msa1129120:CDS
TAGTTTAACTTCACGAGGAG+TGG 0.511679 7_3:-81074742 None:intergenic
TATAGAAGTTCTTTGAAGCA+TGG 0.512144 7_3:-81075041 None:intergenic
GAAGGATTAGGGAGGGTGCT+GGG 0.520089 7_3:+81074916 Msa1129120:CDS
TTCTTTGAAGCATGGGAATG+GGG 0.526135 7_3:-81075033 None:intergenic
ATGATAAACATGACAAAACT+AGG 0.530951 7_3:-81077717 None:intergenic
CAAGGGCCTCATCGTAAGAA+TGG 0.533526 7_3:+81076389 Msa1129120:CDS
CCGCGGTGGTGACAGCTGCC+GGG 0.534362 7_3:-81077301 None:intergenic
ATAGAAGTTCTTTGAAGCAT+GGG 0.535113 7_3:-81075040 None:intergenic
CCCTTCACCACACCGGTCAA+GGG 0.541833 7_3:+81076372 Msa1129120:CDS
AAACCTCTTCATATCTTCAA+AGG 0.555864 7_3:-81077639 None:intergenic
ATGGTGGATTGTACTGGTGA+GGG 0.557820 7_3:+81074948 Msa1129120:CDS
GAAACTATTCATGAATGCCT+GGG 0.560588 7_3:+81076878 Msa1129120:CDS
ATTACTATCCATTTGCAGGA+AGG 0.563934 7_3:+81074898 Msa1129120:CDS
GGACAGAAGTCTAACTTGAA+AGG 0.564133 7_3:-81074377 None:intergenic
ATCTTATGGTTATTAAGGAA+CGG 0.564453 7_3:+81077417 Msa1129120:CDS
ATTAGGTTATGCTGTGGAGT+TGG 0.566011 7_3:+81077343 Msa1129120:CDS
AGAAGAAAGATTGATGAACC+AGG 0.568559 7_3:-81077055 None:intergenic
GGTTGCATGTAATGTGTGGT+GGG 0.570054 7_3:-81076974 None:intergenic
GATGGTGGATTGTACTGGTG+AGG 0.570539 7_3:+81074947 Msa1129120:CDS
TCACGAGGAGTGGAAGCAGC+TGG 0.571211 7_3:-81074732 None:intergenic
AACTTGAAAGGATTTAGTAT+CGG 0.571421 7_3:-81074365 None:intergenic
GGTGTTTATTTACAACTACA+AGG 0.572054 7_3:+81077438 Msa1129120:CDS
TCCACAAAGCTTCCCCGCGG+TGG 0.581894 7_3:-81077315 None:intergenic
CTTACGATGAGGCCCTTGAC+CGG 0.583352 7_3:-81076384 None:intergenic
AAGTTGATGGTGGATTGTAC+TGG 0.588782 7_3:+81074942 Msa1129120:CDS
TGTCCTTTGAAGATATGAAG+AGG 0.589462 7_3:+81077636 Msa1129120:CDS
TGGTTGCATGTAATGTGTGG+TGG 0.590063 7_3:-81076975 None:intergenic
AAAGAGTTAGATGAGATGCT+TGG 0.590438 7_3:+81077665 Msa1129120:CDS
GGGATGATATAGGCTGCTCC+AGG 0.591783 7_3:-81077566 None:intergenic
GGAAGAAGATACTACAACCC+TGG 0.593991 7_3:+81077037 Msa1129120:CDS
GCATGAAACCACCGCACTTG+AGG 0.601841 7_3:-81076812 None:intergenic
TTGAACCATACAATGAGCGA+TGG 0.603418 7_3:+81076846 Msa1129120:CDS
GTACAATGACGAAGGTGAGA+TGG 0.604232 7_3:-81077116 None:intergenic
TGCTGGGCGTAAGTTGATGG+TGG 0.605454 7_3:+81074932 Msa1129120:CDS
CATACAATGAGCGATGGAGC+TGG 0.610758 7_3:+81076852 Msa1129120:CDS
TCTTTGAAGCATGGGAATGG+GGG 0.613320 7_3:-81075032 None:intergenic
GAAGAAAGATTGATGAACCA+GGG 0.616617 7_3:-81077054 None:intergenic
AATATCCAACAAGTGGCGAA+TGG 0.616842 7_3:-81077259 None:intergenic
ATCCATGTAAAATAAAGTTG+TGG 0.619116 7_3:+81077927 Msa1129120:three_prime_UTR
TTACCGTAATATCCAACAAG+TGG 0.632459 7_3:-81077266 None:intergenic
ATTAAAAGCTGAAGTTACAG+AGG 0.635766 7_3:+81077373 Msa1129120:CDS
TGTAACACTTGATCAATTTG+GGG 0.637489 7_3:+81074998 Msa1129120:CDS
TCTGACATAGATGATCAAGA+AGG 0.638298 7_3:+81074768 Msa1129120:CDS
CGAGGAGTGGAAGCAGCTGG+TGG 0.639794 7_3:-81074729 None:intergenic
TTGACCGGTGTGGTGAAGGG+AGG 0.647402 7_3:-81076369 None:intergenic
GTTGAACCATTCTTACGATG+AGG 0.647528 7_3:-81076395 None:intergenic
CATTATTGTTCACAGTGCGG+AGG 0.651919 7_3:+81074688 Msa1129120:CDS
GCCTGGGCAGAAATGGCTCG+AGG 0.654434 7_3:+81076894 Msa1129120:CDS
GCATCGTCAATGCACGCTCG+AGG 0.662333 7_3:+81077225 Msa1129120:CDS
TCTACCTCCCTTCACCACAC+CGG 0.662546 7_3:+81076365 Msa1129120:CDS
TTTGCAGGAAGGATTAGGGA+GGG 0.663911 7_3:+81074909 Msa1129120:CDS
AAACTCATTAGGTTATGCTG+TGG 0.666130 7_3:+81077337 Msa1129120:CDS
GATAATAGTTTAACTTCACG+AGG 0.669478 7_3:-81074747 None:intergenic
TTACCTGTATGAGTCGAATG+GGG 0.671022 7_3:-81075097 None:intergenic
CACCATTATTGTTCACAGTG+CGG 0.673411 7_3:+81074685 Msa1129120:CDS
ATTTGCAGGAAGGATTAGGG+AGG 0.677174 7_3:+81074908 Msa1129120:CDS
TGATGGTTGCATGTAATGTG+TGG 0.678806 7_3:-81076978 None:intergenic
ATTACGTATTCATGAACACG+TGG 0.680316 7_3:-81074404 None:intergenic
GTGACACGCCTCAAGTGCGG+TGG 0.681359 7_3:+81076804 Msa1129120:CDS
CCTGTATGAGTCGAATGGGG+CGG 0.682735 7_3:-81075094 None:intergenic
TAGGTGACACGCCTCAAGTG+CGG 0.682839 7_3:+81076801 Msa1129120:intron
TCGTAAGAATGGTTCAACGA+GGG 0.694699 7_3:+81076400 Msa1129120:CDS
CGAATGTCGTACAATGACGA+AGG 0.701737 7_3:-81077124 None:intergenic
GATGAGGCCCTTGACCGGTG+TGG 0.732876 7_3:-81076379 None:intergenic
GAATTGTGTACGTAAACCTG+TGG 0.747356 7_3:-81074603 None:intergenic
CGGCAGCTGTCACCACCGCG+GGG 0.749713 7_3:+81077303 Msa1129120:CDS
ATCGTAAGAATGGTTCAACG+AGG 0.760120 7_3:+81076399 Msa1129120:CDS
GTTTCCACAAAGCTTCCCCG+CGG 0.764073 7_3:-81077318 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTATAAATTAAAAAA+TGG + chr7_3:81075962-81075981 Msa1129120:intron 0.0%
!!! ACATTTTAAGATATTATATT+TGG - chr7_3:81075759-81075778 None:intergenic 10.0%
!! ACTATATATAAAAAACATAA+GGG - chr7_3:81076728-81076747 None:intergenic 10.0%
!! TACTATATATAAAAAACATA+AGG - chr7_3:81076729-81076748 None:intergenic 10.0%
!!! AATCGCATTTTTTATTTTTT+GGG - chr7_3:81074493-81074512 None:intergenic 15.0%
!!! AAATCGCATTTTTTATTTTT+TGG - chr7_3:81074494-81074513 None:intergenic 15.0%
!!! TTTTTTTTATAATATGTTCC+AGG + chr7_3:81075193-81075212 Msa1129120:intron 15.0%
!! TAAACCCTATTTAAAAAAAT+TGG + chr7_3:81075731-81075750 Msa1129120:intron 15.0%
!! ATGTATAAGTGATTTAAATT+TGG + chr7_3:81075775-81075794 Msa1129120:intron 15.0%
!! TGTATAAGTGATTTAAATTT+GGG + chr7_3:81075776-81075795 Msa1129120:intron 15.0%
!! AAAAGTTATGAAAATTAACA+TGG + chr7_3:81075846-81075865 Msa1129120:intron 15.0%
!! AAAGTTATGAAAATTAACAT+GGG + chr7_3:81075847-81075866 Msa1129120:intron 15.0%
!!! CTTTTTTTATTTTAGATTAG+AGG - chr7_3:81076222-81076241 None:intergenic 15.0%
!!! CTCTAATCTAAAATAAAAAA+AGG + chr7_3:81076220-81076239 Msa1129120:intron 15.0%
!! TAATACATGTAAATTATGAA+CGG + chr7_3:81076497-81076516 Msa1129120:intron 15.0%
!!! TATTATATTTGCTATATTGT+TGG - chr7_3:81076624-81076643 None:intergenic 15.0%
!! TATAACATATATCTTGATAT+TGG + chr7_3:81076765-81076784 Msa1129120:intron 15.0%
!!! TAAACTTTTACTTAAATTTG+AGG + chr7_3:81077878-81077897 Msa1129120:three_prime_UTR 15.0%
!!! ATTGGAATATACGATTTTTT+TGG - chr7_3:81075512-81075531 None:intergenic 20.0%
!! ATTCCATTTCAAAAAATTTG+TGG - chr7_3:81075683-81075702 None:intergenic 20.0%
!!! GGATCCAATTTTTTTAAATA+GGG - chr7_3:81075738-81075757 None:intergenic 20.0%
!!! TGGATCCAATTTTTTTAAAT+AGG - chr7_3:81075739-81075758 None:intergenic 20.0%
!! GTATAAGTGATTTAAATTTG+GGG + chr7_3:81075777-81075796 Msa1129120:intron 20.0%
!!! GTTTATGCAATTTTTTTTAG+AGG + chr7_3:81076023-81076042 Msa1129120:intron 20.0%
!!! ATTTTTTTTAGAGGATGTTT+AGG + chr7_3:81076032-81076051 Msa1129120:intron 20.0%
!!! TGATTTTCATGTAAAAAAGA+CGG + chr7_3:81076437-81076456 Msa1129120:intron 20.0%
!!! AAATTTGTTCTGTTTATAAC+TGG + chr7_3:81076689-81076708 Msa1129120:intron 20.0%
!!! TAAAAAACATAAGGGATTTT+GGG - chr7_3:81076720-81076739 None:intergenic 20.0%
!!! ATAAAAAACATAAGGGATTT+TGG - chr7_3:81076721-81076740 None:intergenic 20.0%
!! TATTGGATTCAAAATATGAT+AGG + chr7_3:81076782-81076801 Msa1129120:intron 20.0%
!! TCTATAAAGATTGATGTATT+TGG - chr7_3:81077857-81077876 None:intergenic 20.0%
!! GGATCACAAATAATTATTTA+CGG - chr7_3:81077911-81077930 None:intergenic 20.0%
! AACTTGAAAGGATTTAGTAT+CGG - chr7_3:81074368-81074387 None:intergenic 25.0%
! ATGAATATTATTGGGAAAAC+TGG - chr7_3:81074468-81074487 None:intergenic 25.0%
! TTTGGGTGATGAATATTATT+GGG - chr7_3:81074476-81074495 None:intergenic 25.0%
!!! TTTTGGGTGATGAATATTAT+TGG - chr7_3:81074477-81074496 None:intergenic 25.0%
!! ATAAAAAATGCGATTTTGCT+TGG + chr7_3:81074498-81074517 Msa1129120:five_prime_UTR 25.0%
! ATACAGGAATTGAAAAGATA+AGG - chr7_3:81074572-81074591 None:intergenic 25.0%
!!! TTTCAATTCCTGTATTTTTG+TGG + chr7_3:81074577-81074596 Msa1129120:five_prime_UTR 25.0%
! CATGTCTAAGAACTTTAATA+GGG - chr7_3:81074857-81074876 None:intergenic 25.0%
! ATGTAACACTTGATCAATTT+GGG + chr7_3:81074997-81075016 Msa1129120:CDS 25.0%
! AGTGAGTATGTCAAATTTAT+TGG - chr7_3:81075172-81075191 None:intergenic 25.0%
! CATCTGTAACAACATAAAAT+TGG - chr7_3:81075530-81075549 None:intergenic 25.0%
!! CAAAATCACATCAATTTTCT+AGG + chr7_3:81076101-81076120 Msa1129120:intron 25.0%
! TATTAGCGCAATAAAAAGAA+CGG - chr7_3:81076482-81076501 None:intergenic 25.0%
! AAATATGTTCGTATTCATGA+TGG - chr7_3:81076998-81077017 None:intergenic 25.0%
!! ATCTTATCACTTCATGTTTT+TGG + chr7_3:81077147-81077166 Msa1129120:CDS 25.0%
! ATCTTATGGTTATTAAGGAA+CGG + chr7_3:81077417-81077436 Msa1129120:CDS 25.0%
! CAAAATTAACCTAAAGCAAA+TGG + chr7_3:81077692-81077711 Msa1129120:exon 25.0%
! ATGATAAACATGACAAAACT+AGG - chr7_3:81077720-81077739 None:intergenic 25.0%
! ATCCATGTAAAATAAAGTTG+TGG + chr7_3:81077927-81077946 Msa1129120:three_prime_UTR 25.0%
ACTTGACAAGATTTAGTTAC+AGG - chr7_3:81074339-81074358 None:intergenic 30.0%
AAACTGGCACATGAAATTTA+AGG - chr7_3:81074452-81074471 None:intergenic 30.0%
GTTTATATCACATGCTTACA+TGG + chr7_3:81074545-81074564 Msa1129120:five_prime_UTR 30.0%
! GATAATAGTTTAACTTCACG+AGG - chr7_3:81074750-81074769 None:intergenic 30.0%
TGACGATAGATAAACATCAT+AGG - chr7_3:81074810-81074829 None:intergenic 30.0%
!!! GGGTTTTTTTCTTTCATTGA+CGG - chr7_3:81074837-81074856 None:intergenic 30.0%
GCATGTCTAAGAACTTTAAT+AGG - chr7_3:81074858-81074877 None:intergenic 30.0%
GATGTAACACTTGATCAATT+TGG + chr7_3:81074996-81075015 Msa1129120:CDS 30.0%
TGTAACACTTGATCAATTTG+GGG + chr7_3:81074998-81075017 Msa1129120:CDS 30.0%
!! ATAGAAGTTCTTTGAAGCAT+GGG - chr7_3:81075043-81075062 None:intergenic 30.0%
!! TATAGAAGTTCTTTGAAGCA+TGG - chr7_3:81075044-81075063 None:intergenic 30.0%
!! TCAATAATTAGTTCTGATCC+TGG - chr7_3:81075074-81075093 None:intergenic 30.0%
TATGTAATTAGTTCAGATCC+TGG - chr7_3:81075214-81075233 None:intergenic 30.0%
TTTATGTTGTTACAGATGCA+TGG + chr7_3:81075532-81075551 Msa1129120:intron 30.0%
! GTCATCTTTTGTTAAAGGTT+TGG - chr7_3:81075568-81075587 None:intergenic 30.0%
! TAGAGGTCATCTTTTGTTAA+AGG - chr7_3:81075573-81075592 None:intergenic 30.0%
ATCTTTAAGCAACTCTTTAG+AGG - chr7_3:81075590-81075609 None:intergenic 30.0%
!!! GCTCCACAAATTTTTTGAAA+TGG + chr7_3:81075677-81075696 Msa1129120:intron 30.0%
GTCATCGTAAAAGATAAACA+TGG - chr7_3:81076600-81076619 None:intergenic 30.0%
! TTTTTCGTCAAATACCATCA+AGG + chr7_3:81077016-81077035 Msa1129120:CDS 30.0%
ATTAAAAGCTGAAGTTACAG+AGG + chr7_3:81077373-81077392 Msa1129120:CDS 30.0%
AGCAGATCTTATGGTTATTA+AGG + chr7_3:81077412-81077431 Msa1129120:CDS 30.0%
GGTGTTTATTTACAACTACA+AGG + chr7_3:81077438-81077457 Msa1129120:CDS 30.0%
TCGTATAAAGTTCAAAGAAG+TGG + chr7_3:81077484-81077503 Msa1129120:CDS 30.0%
!! AAGTTCAAAGAAGTGGATTT+TGG + chr7_3:81077491-81077510 Msa1129120:CDS 30.0%
ATTCTTATGTGGGATGATAT+AGG - chr7_3:81077579-81077598 None:intergenic 30.0%
ATCCCACATAAGAATGTAAA+AGG + chr7_3:81077584-81077603 Msa1129120:CDS 30.0%
! CTCCTTTTACATTCTTATGT+GGG - chr7_3:81077589-81077608 None:intergenic 30.0%
! TCTCCTTTTACATTCTTATG+TGG - chr7_3:81077590-81077609 None:intergenic 30.0%
AAGAATGTAAAAGGAGAAGA+AGG + chr7_3:81077593-81077612 Msa1129120:CDS 30.0%
AAACCTCTTCATATCTTCAA+AGG - chr7_3:81077642-81077661 None:intergenic 30.0%
!! CTTTTACTTAAATTTGAGGC+TGG + chr7_3:81077882-81077901 Msa1129120:three_prime_UTR 30.0%
!!! GTCCACAACTTTATTTTACA+TGG - chr7_3:81077932-81077951 None:intergenic 30.0%
TATTCATGAACACGTGGAAT+AGG - chr7_3:81074401-81074420 None:intergenic 35.0%
ATTACGTATTCATGAACACG+TGG - chr7_3:81074407-81074426 None:intergenic 35.0%
TCTGACATAGATGATCAAGA+AGG + chr7_3:81074768-81074787 Msa1129120:CDS 35.0%
GTGTATTACTATCCATTTGC+AGG + chr7_3:81074894-81074913 Msa1129120:CDS 35.0%
ATTACTATCCATTTGCAGGA+AGG + chr7_3:81074898-81074917 Msa1129120:CDS 35.0%
TTTACCTGTATGAGTCGAAT+GGG - chr7_3:81075101-81075120 None:intergenic 35.0%
! TTTTACCTGTATGAGTCGAA+TGG - chr7_3:81075102-81075121 None:intergenic 35.0%
GAATGCGATAATTGAAACGT+AGG - chr7_3:81075150-81075169 None:intergenic 35.0%
ACATGAGAAATCAACATGCA+TGG + chr7_3:81076164-81076183 Msa1129120:intron 35.0%
TGAAACTATTCATGAATGCC+TGG + chr7_3:81076877-81076896 Msa1129120:CDS 35.0%
GAAACTATTCATGAATGCCT+GGG + chr7_3:81076878-81076897 Msa1129120:CDS 35.0%
CATTCAACCTGTATGGAATA+GGG + chr7_3:81076932-81076951 Msa1129120:CDS 35.0%
ATGGAATAGGGAGATTCTAA+TGG + chr7_3:81076944-81076963 Msa1129120:CDS 35.0%
TGTAGTATCTTCTTCCTTGA+TGG - chr7_3:81077033-81077052 None:intergenic 35.0%
GAAGAAAGATTGATGAACCA+GGG - chr7_3:81077057-81077076 None:intergenic 35.0%
AGAAGAAAGATTGATGAACC+AGG - chr7_3:81077058-81077077 None:intergenic 35.0%
TTACCGTAATATCCAACAAG+TGG - chr7_3:81077269-81077288 None:intergenic 35.0%
! AAGCTTTGTGGAAACTCATT+AGG + chr7_3:81077326-81077345 Msa1129120:CDS 35.0%
AAACTCATTAGGTTATGCTG+TGG + chr7_3:81077337-81077356 Msa1129120:CDS 35.0%
!! TCAAAGAAGTGGATTTTGGA+TGG + chr7_3:81077495-81077514 Msa1129120:CDS 35.0%
!! CAAAGAAGTGGATTTTGGAT+GGG + chr7_3:81077496-81077515 Msa1129120:CDS 35.0%
!! AAAGAAGTGGATTTTGGATG+GGG + chr7_3:81077497-81077516 Msa1129120:CDS 35.0%
! TGTCCTTTGAAGATATGAAG+AGG + chr7_3:81077636-81077655 Msa1129120:CDS 35.0%
AAAGAGTTAGATGAGATGCT+TGG + chr7_3:81077665-81077684 Msa1129120:CDS 35.0%
AACTAGGAACCATTTGCTTT+AGG - chr7_3:81077704-81077723 None:intergenic 35.0%
GGACAGAAGTCTAACTTGAA+AGG - chr7_3:81074380-81074399 None:intergenic 40.0%
TGTGGTGACCACAAAAATAC+AGG - chr7_3:81074588-81074607 None:intergenic 40.0%
!! TGTATTTTTGTGGTCACCAC+AGG + chr7_3:81074587-81074606 Msa1129120:five_prime_UTR 40.0%
GAATTGTGTACGTAAACCTG+TGG - chr7_3:81074606-81074625 None:intergenic 40.0%
CACCATTATTGTTCACAGTG+CGG + chr7_3:81074685-81074704 Msa1129120:CDS 40.0%
! TAGTTTAACTTCACGAGGAG+TGG - chr7_3:81074745-81074764 None:intergenic 40.0%
ATCCATTTGCAGGAAGGATT+AGG + chr7_3:81074904-81074923 Msa1129120:CDS 40.0%
TCCATTTGCAGGAAGGATTA+GGG + chr7_3:81074905-81074924 Msa1129120:CDS 40.0%
!! AAGTTGATGGTGGATTGTAC+TGG + chr7_3:81074942-81074961 Msa1129120:CDS 40.0%
!! TTCTTTGAAGCATGGGAATG+GGG - chr7_3:81075036-81075055 None:intergenic 40.0%
!! GTTCTTTGAAGCATGGGAAT+GGG - chr7_3:81075037-81075056 None:intergenic 40.0%
!! AGTTCTTTGAAGCATGGGAA+TGG - chr7_3:81075038-81075057 None:intergenic 40.0%
GAACTTCTATACGATGTTCC+AGG + chr7_3:81075053-81075072 Msa1129120:CDS 40.0%
TTACCTGTATGAGTCGAATG+GGG - chr7_3:81075100-81075119 None:intergenic 40.0%
! ATGAGTGTACGCCTTTTAAG+TGG + chr7_3:81075632-81075651 Msa1129120:intron 40.0%
GTTGAACCATTCTTACGATG+AGG - chr7_3:81076398-81076417 None:intergenic 40.0%
ATCGTAAGAATGGTTCAACG+AGG + chr7_3:81076399-81076418 Msa1129120:CDS 40.0%
TCGTAAGAATGGTTCAACGA+GGG + chr7_3:81076400-81076419 Msa1129120:CDS 40.0%
!! TCAACGAGGGTATTCAGATA+AGG + chr7_3:81076413-81076432 Msa1129120:intron 40.0%
TTGAACCATACAATGAGCGA+TGG + chr7_3:81076846-81076865 Msa1129120:CDS 40.0%
AACCTTCCATTCAACCTGTA+TGG + chr7_3:81076925-81076944 Msa1129120:CDS 40.0%
! TTCCATACAGGTTGAATGGA+AGG - chr7_3:81076930-81076949 None:intergenic 40.0%
! CCTATTCCATACAGGTTGAA+TGG - chr7_3:81076934-81076953 None:intergenic 40.0%
CCATTCAACCTGTATGGAAT+AGG + chr7_3:81076931-81076950 Msa1129120:CDS 40.0%
AGAATCTCCCTATTCCATAC+AGG - chr7_3:81076942-81076961 None:intergenic 40.0%
TGATGGTTGCATGTAATGTG+TGG - chr7_3:81076981-81077000 None:intergenic 40.0%
! CTAACTGCAATGCTTTTGTG+CGG - chr7_3:81077178-81077197 None:intergenic 40.0%
!! CACAAAAGCATTGCAGTTAG+AGG + chr7_3:81077178-81077197 Msa1129120:CDS 40.0%
AATATCCAACAAGTGGCGAA+TGG - chr7_3:81077262-81077281 None:intergenic 40.0%
! TCGCCACTTGTTGGATATTA+CGG + chr7_3:81077263-81077282 Msa1129120:CDS 40.0%
!! CGGTAATTGTTTTGCTTACC+CGG + chr7_3:81077283-81077302 Msa1129120:CDS 40.0%
ATTAGGTTATGCTGTGGAGT+TGG + chr7_3:81077343-81077362 Msa1129120:CDS 40.0%
GCATTCTGTAGCAGATCTTA+TGG + chr7_3:81077403-81077422 Msa1129120:CDS 40.0%
TGCTTGGCAACGACACAATA+AGG + chr7_3:81074514-81074533 Msa1129120:five_prime_UTR 45.0%
CTCCGCACTGTGAACAATAA+TGG - chr7_3:81074690-81074709 None:intergenic 45.0%
CATTATTGTTCACAGTGCGG+AGG + chr7_3:81074688-81074707 Msa1129120:CDS 45.0%
TCCCTAATCCTTCCTGCAAA+TGG - chr7_3:81074909-81074928 None:intergenic 45.0%
ATTTGCAGGAAGGATTAGGG+AGG + chr7_3:81074908-81074927 Msa1129120:CDS 45.0%
TTTGCAGGAAGGATTAGGGA+GGG + chr7_3:81074909-81074928 Msa1129120:CDS 45.0%
!! ATGGTGGATTGTACTGGTGA+GGG + chr7_3:81074948-81074967 Msa1129120:CDS 45.0%
!! TCTTTGAAGCATGGGAATGG+GGG - chr7_3:81075035-81075054 None:intergenic 45.0%
!! AGTGTACGCCTTTTAAGTGG+CGG + chr7_3:81075635-81075654 Msa1129120:intron 45.0%
GGTTGCATGTAATGTGTGGT+GGG - chr7_3:81076977-81076996 None:intergenic 45.0%
TGGTTGCATGTAATGTGTGG+TGG - chr7_3:81076978-81076997 None:intergenic 45.0%
GGAAGAAGATACTACAACCC+TGG + chr7_3:81077037-81077056 Msa1129120:CDS 45.0%
GTACAATGACGAAGGTGAGA+TGG - chr7_3:81077119-81077138 None:intergenic 45.0%
CGAATGTCGTACAATGACGA+AGG - chr7_3:81077127-81077146 None:intergenic 45.0%
! TATGGTGGAGCTGCAAAAAG+TGG + chr7_3:81077530-81077549 Msa1129120:CDS 45.0%
! ATGGTGGAGCTGCAAAAAGT+GGG + chr7_3:81077531-81077550 Msa1129120:CDS 45.0%
ATATAGGCTGCTCCAGGAAA+AGG - chr7_3:81077563-81077582 None:intergenic 45.0%
!!! TTTTATATTTATTATATTGT+TGG - chr7_3:81075399-81075418 None:intergenic 5.0%
!! GATGGTGGATTGTACTGGTG+AGG + chr7_3:81074947-81074966 Msa1129120:CDS 50.0%
CAAGGGCCTCATCGTAAGAA+TGG + chr7_3:81076389-81076408 Msa1129120:CDS 50.0%
CAGCTCCATCGCTCATTGTA+TGG - chr7_3:81076854-81076873 None:intergenic 50.0%
CATACAATGAGCGATGGAGC+TGG + chr7_3:81076852-81076871 Msa1129120:CDS 50.0%
CATGAATGCCTGGGCAGAAA+TGG + chr7_3:81076887-81076906 Msa1129120:CDS 50.0%
GTCAACCATTCGCCACTTGT+TGG + chr7_3:81077254-81077273 Msa1129120:CDS 50.0%
!! AGTGGATTTTGGATGGGGTG+AGG + chr7_3:81077502-81077521 Msa1129120:CDS 50.0%
TGGTGGAGCTGCAAAAAGTG+GGG + chr7_3:81077532-81077551 Msa1129120:CDS 50.0%
!! GAAGGATTAGGGAGGGTGCT+GGG + chr7_3:81074916-81074935 Msa1129120:CDS 55.0%
!! TGCTGGGCGTAAGTTGATGG+TGG + chr7_3:81074932-81074951 Msa1129120:CDS 55.0%
CCTGTATGAGTCGAATGGGG+CGG - chr7_3:81075097-81075116 None:intergenic 55.0%
GTGTGGCTCCGCCACTTAAA+AGG - chr7_3:81075646-81075665 None:intergenic 55.0%
CGGAGCCACACACAACATGA+GGG + chr7_3:81075655-81075674 Msa1129120:intron 55.0%
TGGAGCCCTCATGTTGTGTG+TGG - chr7_3:81075663-81075682 None:intergenic 55.0%
TCTACCTCCCTTCACCACAC+CGG + chr7_3:81076365-81076384 Msa1129120:CDS 55.0%
CTTACGATGAGGCCCTTGAC+CGG - chr7_3:81076387-81076406 None:intergenic 55.0%
TAGGTGACACGCCTCAAGTG+CGG + chr7_3:81076801-81076820 Msa1129120:intron 55.0%
GCATGAAACCACCGCACTTG+AGG - chr7_3:81076815-81076834 None:intergenic 55.0%
CATAGCTGCGCTTCGTCTCT+TGG + chr7_3:81077091-81077110 Msa1129120:CDS 55.0%
GTTTCCACAAAGCTTCCCCG+CGG - chr7_3:81077321-81077340 None:intergenic 55.0%
! GGATTTTGGATGGGGTGAGG+CGG + chr7_3:81077505-81077524 Msa1129120:CDS 55.0%
GAGCTGCAAAAAGTGGGGCT+GGG + chr7_3:81077537-81077556 Msa1129120:CDS 55.0%
GGGATGATATAGGCTGCTCC+AGG - chr7_3:81077569-81077588 None:intergenic 55.0%
TCACGAGGAGTGGAAGCAGC+TGG - chr7_3:81074735-81074754 None:intergenic 60.0%
! GGAAGGATTAGGGAGGGTGC+TGG + chr7_3:81074915-81074934 Msa1129120:CDS 60.0%
!! GGGTGCTGGGCGTAAGTTGA+TGG + chr7_3:81074929-81074948 Msa1129120:CDS 60.0%
CCGCCCCATTCGACTCATAC+AGG + chr7_3:81075094-81075113 Msa1129120:CDS 60.0%
GCGGAGCCACACACAACATG+AGG + chr7_3:81075654-81075673 Msa1129120:intron 60.0%
TTGACCGGTGTGGTGAAGGG+AGG - chr7_3:81076372-81076391 None:intergenic 60.0%
TCCCTTCACCACACCGGTCA+AGG + chr7_3:81076371-81076390 Msa1129120:CDS 60.0%
CCCTTGACCGGTGTGGTGAA+GGG - chr7_3:81076375-81076394 None:intergenic 60.0%
CCCTTCACCACACCGGTCAA+GGG + chr7_3:81076372-81076391 Msa1129120:CDS 60.0%
TCCTCGAGCCATTTCTGCCC+AGG - chr7_3:81076898-81076917 None:intergenic 60.0%
GCATCGTCAATGCACGCTCG+AGG + chr7_3:81077225-81077244 Msa1129120:CDS 60.0%
GGAGCTGCAAAAAGTGGGGC+TGG + chr7_3:81077536-81077555 Msa1129120:CDS 60.0%
! CTGGTGGCACCAGCTCTGGT+TGG - chr7_3:81074716-81074735 None:intergenic 65.0%
CGAGGAGTGGAAGCAGCTGG+TGG - chr7_3:81074732-81074751 None:intergenic 65.0%
GCCCTTGACCGGTGTGGTGA+AGG - chr7_3:81076376-81076395 None:intergenic 65.0%
GATGAGGCCCTTGACCGGTG+TGG - chr7_3:81076382-81076401 None:intergenic 65.0%
GTGACACGCCTCAAGTGCGG+TGG + chr7_3:81076804-81076823 Msa1129120:CDS 65.0%
GCCTGGGCAGAAATGGCTCG+AGG + chr7_3:81076894-81076913 Msa1129120:CDS 65.0%
ACCACCGCGGGGAAGCTTTG+TGG + chr7_3:81077314-81077333 Msa1129120:CDS 65.0%
TCCACAAAGCTTCCCCGCGG+TGG - chr7_3:81077318-81077337 None:intergenic 65.0%
GGATGGGGTGAGGCGGTGTA+TGG + chr7_3:81077512-81077531 Msa1129120:CDS 65.0%
TGGGGTGAGGCGGTGTATGG+TGG + chr7_3:81077515-81077534 Msa1129120:CDS 65.0%
! AGTGGGGCTGGGCCTTTTCC+TGG + chr7_3:81077548-81077567 Msa1129120:CDS 65.0%
GCGGAGGAGCCAACCAGAGC+TGG + chr7_3:81074704-81074723 Msa1129120:CDS 70.0%
GCAGCTGGTGGCACCAGCTC+TGG - chr7_3:81074720-81074739 None:intergenic 70.0%
CCGCGGTGGTGACAGCTGCC+GGG - chr7_3:81077304-81077323 None:intergenic 75.0%
CCCGGCAGCTGTCACCACCG+CGG + chr7_3:81077301-81077320 Msa1129120:CDS 75.0%
CCCGCGGTGGTGACAGCTGC+CGG - chr7_3:81077305-81077324 None:intergenic 75.0%
CCGGCAGCTGTCACCACCGC+GGG + chr7_3:81077302-81077321 Msa1129120:CDS 75.0%
CGGCAGCTGTCACCACCGCG+GGG + chr7_3:81077303-81077322 Msa1129120:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81074330 81077984 81074330 ID=Msa1129120;Name=Msa1129120
chr7_3 mRNA 81074330 81077984 81074330 ID=Msa1129120-mRNA-1;Parent=Msa1129120;Name=Msa1129120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=345|0|0.66|0.66|1|1|3|284|464
chr7_3 exon 81074330 81075115 81074330 ID=Msa1129120-mRNA-1:exon:23435;Parent=Msa1129120-mRNA-1
chr7_3 exon 81076365 81076421 81076365 ID=Msa1129120-mRNA-1:exon:23436;Parent=Msa1129120-mRNA-1
chr7_3 exon 81076804 81077984 81076804 ID=Msa1129120-mRNA-1:exon:23437;Parent=Msa1129120-mRNA-1
chr7_3 five_prime_UTR 81074330 81074674 81074330 ID=Msa1129120-mRNA-1:five_prime_utr;Parent=Msa1129120-mRNA-1
chr7_3 CDS 81074675 81075115 81074675 ID=Msa1129120-mRNA-1:cds;Parent=Msa1129120-mRNA-1
chr7_3 CDS 81076365 81076421 81076365 ID=Msa1129120-mRNA-1:cds;Parent=Msa1129120-mRNA-1
chr7_3 CDS 81076804 81077700 81076804 ID=Msa1129120-mRNA-1:cds;Parent=Msa1129120-mRNA-1
chr7_3 three_prime_UTR 81077701 81077984 81077701 ID=Msa1129120-mRNA-1:three_prime_utr;Parent=Msa1129120-mRNA-1
Gene Sequence

>Msa1129120

ATGACTTCAGCACCATTATTGTTCACAGTGCGGAGGAGCCAACCAGAGCTGGTGCCACCAGCTGCTTCCACTCCTCGTGAAGTTAAACTATTATCTGACATAGATGATCAAGAAGGCTTGCGTTTCAATATTCCTATGATGTTTATCTATCGTCATGAACCGTCAATGAAAGAAAAAAACCCTATTAAAGTTCTTAGACATGCACTCTCACAAGCACTTGTGTATTACTATCCATTTGCAGGAAGGATTAGGGAGGGTGCTGGGCGTAAGTTGATGGTGGATTGTACTGGTGAGGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGATCAATTTGGGGACGCTTTGCATCCCCCATTCCCATGCTTCAAAGAACTTCTATACGATGTTCCAGGATCAGAACTAATTATTGACCGCCCCATTCGACTCATACAGTCTACCTCCCTTCACCACACCGGTCAAGGGCCTCATCGTAAGAATGGTTCAACGAGGGTGACACGCCTCAAGTGCGGTGGTTTCATGCTAGTCGTGTATTTGAACCATACAATGAGCGATGGAGCTGGTTTGAAACTATTCATGAATGCCTGGGCAGAAATGGCTCGAGGAGCACATAAACCTTCCATTCAACCTGTATGGAATAGGGAGATTCTAATGGCAAGAGACCCACCACACATTACATGCAACCATCATGAATACGAACATATTTTTTCGTCAAATACCATCAAGGAAGAAGATACTACAACCCTGGTTCATCAATCTTTCTTCTTTAGAACTTCTGACATAGCTGCGCTTCGTCTCTTGGTTCCATCTCACCTTCGTCATTGTACGACATTCGATCTTATCACTTCATGTTTTTGGTGCTGCCGCACAAAAGCATTGCAGTTAGAGGCAGATGAAGAGATACGAATGATGTGCATCGTCAATGCACGCTCGAGGTTTAGCGTCAACCATTCGCCACTTGTTGGATATTACGGTAATTGTTTTGCTTACCCGGCAGCTGTCACCACCGCGGGGAAGCTTTGTGGAAACTCATTAGGTTATGCTGTGGAGTTGGTGAGAAAATTAAAAGCTGAAGTTACAGAGGAATACATGCATTCTGTAGCAGATCTTATGGTTATTAAGGAACGGTGTTTATTTACAACTACAAGGTCTTGTGTTGTTTCAGATGTGACTCGTATAAAGTTCAAAGAAGTGGATTTTGGATGGGGTGAGGCGGTGTATGGTGGAGCTGCAAAAAGTGGGGCTGGGCCTTTTCCTGGAGCAGCCTATATCATCCCACATAAGAATGTAAAAGGAGAAGAAGGTTTCATATTACTAGTTTGTTTGTCCTTTGAAGATATGAAGAGGTTTGCTAAAGAGTTAGATGAGATGCTTGGTAAACAAAATTAA
Protein sequence

>Msa1129120

MTSAPLLFTVRRSQPELVPPAASTPREVKLLSDIDDQEGLRFNIPMMFIYRHEPSMKEKNPIKVLRHALSQALVYYYPFAGRIREGAGRKLMVDCTGEGVMFIEAEADVTLDQFGDALHPPFPCFKELLYDVPGSELIIDRPIRLIQSTSLHHTGQGPHRKNGSTRVTRLKCGGFMLVVYLNHTMSDGAGLKLFMNAWAEMARGAHKPSIQPVWNREILMARDPPHITCNHHEYEHIFSSNTIKEEDTTTLVHQSFFFRTSDIAALRLLVPSHLRHCTTFDLITSCFWCCRTKALQLEADEEIRMMCIVNARSRFSVNHSPLVGYYGNCFAYPAAVTTAGKLCGNSLGYAVELVRKLKAEVTEEYMHSVADLMVIKERCLFTTTRSCVVSDVTRIKFKEVDFGWGEAVYGGAAKSGAGPFPGAAYIIPHKNVKGEEGFILLVCLSFEDMKRFAKELDEMLGKQN*