AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046410 MtrunA17_Chr1g0200511 91.855 221 18 0 4 224 8 228 1.12e-149 415
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046410 AT4G09620.1 55.814 215 91 2 11 224 1 212 1.88e-79 237
Msa0046410 AT4G09620.3 55.814 215 91 2 11 224 1 212 1.88e-79 237
Msa0046410 AT4G09620.2 56.338 213 89 2 13 224 1 210 5.36e-79 236

Find 67 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTTGTTCATTCTCCTTAC+TGG 0.079985 1_1:+78578638 Msa0046410:CDS
GTCAAACAGGATTTATTATT+TGG 0.092352 1_1:+78579369 Msa0046410:three_prime_UTR
TCCATTTACTGCCTCAAATT+TGG 0.102598 1_1:-78578686 None:intergenic
ATTGCATGGTTCTCACATTT+TGG 0.171163 1_1:+78579060 Msa0046410:three_prime_UTR
CCTTCGAAATCCAAAAGTTT+TGG 0.174584 1_1:+78578876 Msa0046410:CDS
CCCAAATTTGAGGCAGTAAA+TGG 0.185063 1_1:+78578685 Msa0046410:CDS
GTCTATTTCCTCTTAACTTT+TGG 0.228846 1_1:-78575704 None:intergenic
AAATTACATCCAAGAACTTC+TGG 0.252185 1_1:-78578775 None:intergenic
ATATTAAAACCCAAAACTTT+TGG 0.261186 1_1:-78578886 None:intergenic
CCATTTACTGCCTCAAATTT+GGG 0.285378 1_1:-78578685 None:intergenic
CCTTGTTCATTCTCCTTACT+GGG 0.302250 1_1:+78578639 Msa0046410:CDS
GATATTTGGCGATGGAATAA+TGG 0.339231 1_1:-78578416 None:intergenic
TGGTGAGAGCGTAGATGATA+TGG 0.359980 1_1:+78575775 Msa0046410:exon
CAATACTCCACTGCTCCTTC+AGG 0.365711 1_1:-78578828 None:intergenic
CTCAACCACCAAAAGTTAAG+AGG 0.388853 1_1:+78575696 None:intergenic
AAGATACTTGGAAAAGCATT+TGG 0.395197 1_1:+78578616 Msa0046410:CDS
ATGGAACATTAGATTATCTA+AGG 0.403508 1_1:+78578704 Msa0046410:CDS
ATCGTGCAGGCTGATCTTGC+TGG 0.416752 1_1:+78578385 Msa0046410:intron
ATTGTAATTTGTATCAACTT+AGG 0.421605 1_1:-78579302 None:intergenic
ACCTATTGATGATGTCAAAC+AGG 0.424650 1_1:+78579356 Msa0046410:three_prime_UTR
CGACTTCGCAAGTATGCATA+TGG 0.429873 1_1:+78579125 Msa0046410:three_prime_UTR
TGATTGTAAGGGAGATTGTA+AGG 0.441638 1_1:+78578909 Msa0046410:CDS
GTATTGAAGGAAAATCTCTT+AGG 0.453881 1_1:+78578845 Msa0046410:CDS
TCCTGTTTGACATCATCAAT+AGG 0.454728 1_1:-78579357 None:intergenic
AGGCACAATGCACTAGATGC+TGG 0.458361 1_1:+78578929 Msa0046410:CDS
CCTTCACCTTCTCGCCGCTC+TGG 0.459797 1_1:+78575818 Msa0046410:CDS
TAACTTCGACGATGAAGAAA+AGG 0.469350 1_1:+78578591 Msa0046410:CDS
TATGAATTGATGAAGTTACT+TGG 0.469958 1_1:+78579162 Msa0046410:three_prime_UTR
AAGGAGCAGTGGAGTATTGA+AGG 0.472993 1_1:+78578832 Msa0046410:CDS
TGGGTTCGATTCTAGTTGAT+TGG 0.477953 1_1:+78578949 Msa0046410:exon
GAAGAAAAGGACAAGATACT+TGG 0.482017 1_1:+78578604 Msa0046410:CDS
AATGAATTATTTCTGCAACT+TGG 0.490911 1_1:-78579086 None:intergenic
AAATAAACCACTTTGAAAGC+TGG 0.497008 1_1:-78579458 None:intergenic
TGGCGATGGAATAATGGAAA+AGG 0.502232 1_1:-78578410 None:intergenic
GTGATGAAGATCGGAGTATG+TGG 0.505034 1_1:+78578539 Msa0046410:CDS
TTGACATCATCAATAGGTTG+AGG 0.508507 1_1:-78579351 None:intergenic
AATATCAGAGACATGGAAGC+TGG 0.514777 1_1:-78579395 None:intergenic
TCACGATCTTCTCCCCAGTA+AGG 0.522126 1_1:-78578652 None:intergenic
TGACATCATCAATAGGTTGA+GGG 0.525521 1_1:-78579350 None:intergenic
CAAATCATTCTACCAACCAT+TGG 0.536249 1_1:+78578476 Msa0046410:CDS
TGATGAAGTTACTTGGACAA+TGG 0.538545 1_1:+78579169 Msa0046410:three_prime_UTR
GAACAATGATGTTATGCTGC+AGG 0.558364 1_1:-78579001 None:intergenic
TATGGTATCGTGCAAGTGAA+TGG 0.560960 1_1:+78575755 Msa0046410:five_prime_UTR
GGCACAATGCACTAGATGCT+GGG 0.562129 1_1:+78578930 Msa0046410:CDS
GAAGGAAGTTCCCAAATTTG+AGG 0.566069 1_1:+78578675 Msa0046410:CDS
GAACGAAGATACTCACAGTA+AGG 0.568225 1_1:+78579191 Msa0046410:three_prime_UTR
AGCACAGTTCTTGTGTTGCA+AGG 0.570294 1_1:+78576189 Msa0046410:CDS
TAATCTCAAGTGATGAAGAT+CGG 0.572690 1_1:+78578530 Msa0046410:CDS
GCAGAATCAGTAGCGAGAAG+AGG 0.578077 1_1:-78576166 None:intergenic
TTTATTTACGGTGGAGAGGG+CGG 0.581343 1_1:-78579030 None:intergenic
CCAGAGCGGCGAGAAGGTGA+AGG 0.582029 1_1:-78575818 None:intergenic
CCCAGTAAGGAGAATGAACA+AGG 0.586733 1_1:-78578639 None:intergenic
AACTAACCAGAGCGGCGAGA+AGG 0.588677 1_1:-78575824 None:intergenic
CTTGTTCATTCTCCTTACTG+GGG 0.596220 1_1:+78578640 Msa0046410:CDS
TAAAGATCCTGAAGGAGCAG+TGG 0.596954 1_1:+78578821 Msa0046410:CDS
ATGGTTGGTAGAATGATTTG+AGG 0.603312 1_1:-78578473 None:intergenic
AGAACGCAATATCCAATGGT+TGG 0.612381 1_1:-78578488 None:intergenic
TCGTAGAACGCAATATCCAA+TGG 0.625607 1_1:-78578492 None:intergenic
TCATGATAATATCAGAGACA+TGG 0.627851 1_1:-78579402 None:intergenic
CTGGGTTCCAGCTTTCAAAG+TGG 0.629627 1_1:+78579451 Msa0046410:three_prime_UTR
AGCTAATATAAAGATCCTGA+AGG 0.630758 1_1:+78578813 Msa0046410:CDS
CTGGGGAGAAGATCGTGAGA+AGG 0.634124 1_1:+78578657 Msa0046410:CDS
CAAGTCTTGCAAAAGCAAAG+TGG 0.634464 1_1:+78578449 Msa0046410:CDS
TGATGAAGATCGGAGTATGT+GGG 0.637812 1_1:+78578540 Msa0046410:CDS
AAATAAAAGACAGAATTGCA+TGG 0.657141 1_1:+78579046 Msa0046410:three_prime_UTR
AATTCATTCTCAAGTTAACG+CGG 0.707885 1_1:+78579101 Msa0046410:three_prime_UTR
TTGAAGCTAACTAACCAGAG+CGG 0.785278 1_1:-78575832 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAAAGTCAATGTTTTT+GGG - chr1_1:78575888-78575907 None:intergenic 15.0%
!!! AAAAATAAAGTCAATGTTTT+TGG - chr1_1:78575889-78575908 None:intergenic 15.0%
!!! ATTTTTAAATTAATAGAGTG+AGG - chr1_1:78576503-78576522 None:intergenic 15.0%
!!! TTTTAATTGTAAAGCTTTAA+AGG + chr1_1:78577201-78577220 Msa0046410:intron 15.0%
!!! TTTAATTGTAAAGCTTTAAA+GGG + chr1_1:78577202-78577221 Msa0046410:intron 15.0%
!!! TAGATAAAATTTTAGTTATC+TGG + chr1_1:78579432-78579451 Msa0046410:three_prime_UTR 15.0%
!!! AGATAAAATTTTAGTTATCT+GGG + chr1_1:78579433-78579452 Msa0046410:three_prime_UTR 15.0%
!!! TGACTTTATTTTTCAATTTC+TGG + chr1_1:78575896-78575915 Msa0046410:intron 20.0%
!!! TCTTAACATTTATTTTCTAG+TGG + chr1_1:78576222-78576241 Msa0046410:intron 20.0%
!!! CTTAACATTTATTTTCTAGT+GGG + chr1_1:78576223-78576242 Msa0046410:intron 20.0%
!! ACTATTATTCATGTTTAGAA+AGG + chr1_1:78576304-78576323 Msa0046410:intron 20.0%
!! ATTAATTGGTTATCTTTCTT+TGG + chr1_1:78577515-78577534 Msa0046410:intron 20.0%
!!! TTTTAGGACTTTGTATTTAA+AGG + chr1_1:78577874-78577893 Msa0046410:intron 20.0%
!! ATGCATAAGTTTAATATTGA+TGG - chr1_1:78578252-78578271 None:intergenic 20.0%
!!! ATATTAAAACCCAAAACTTT+TGG - chr1_1:78578889-78578908 None:intergenic 20.0%
!!! GGTTTTAATATTGATTGTAA+GGG + chr1_1:78578898-78578917 Msa0046410:CDS 20.0%
!!! ATTGTAATTTGTATCAACTT+AGG - chr1_1:78579305-78579324 None:intergenic 20.0%
!!! AAACAGTGAGTTTTTGATTA+TGG + chr1_1:78575737-78575756 Msa0046410:five_prime_UTR 25.0%
!!! CCACTTTTTCAAATTATTAC+CGG + chr1_1:78576007-78576026 Msa0046410:intron 25.0%
!! AATGGTTTGTCTGTATTAAT+TGG + chr1_1:78576278-78576297 Msa0046410:intron 25.0%
! TCTGCGTATATTCATAAATT+GGG - chr1_1:78576394-78576413 None:intergenic 25.0%
!! TAATATGGATGATTTGTGTA+AGG - chr1_1:78576468-78576487 None:intergenic 25.0%
! TACACAAATCATCCATATTA+AGG + chr1_1:78576468-78576487 Msa0046410:intron 25.0%
! AGGATTATGAATCCTTAATA+TGG - chr1_1:78576483-78576502 None:intergenic 25.0%
! AATGCAAATAGTAATGATGT+AGG + chr1_1:78577245-78577264 Msa0046410:intron 25.0%
! GGTTGAAAAAAACTTGAATT+TGG + chr1_1:78577273-78577292 Msa0046410:intron 25.0%
! TAGTACAAAATGTTGTCAAA+TGG - chr1_1:78577635-78577654 None:intergenic 25.0%
!! TTTTGTACTAAATAGTGCAT+CGG + chr1_1:78577645-78577664 Msa0046410:intron 25.0%
! CAAGCATTCAAAATTAATCA+TGG + chr1_1:78577777-78577796 Msa0046410:intron 25.0%
! GTATTTAAAGGATATCTTCA+TGG + chr1_1:78577886-78577905 Msa0046410:intron 25.0%
! CTATGTTTACCATACATATT+AGG + chr1_1:78577952-78577971 Msa0046410:intron 25.0%
!! CTAAAACTGTATTCTTTTCA+AGG - chr1_1:78577995-78578014 None:intergenic 25.0%
!!! AAAGAATACAGTTTTAGTTC+TGG + chr1_1:78577998-78578017 Msa0046410:intron 25.0%
! CAAGATGTAAAAAAATTCAC+TGG + chr1_1:78578311-78578330 Msa0046410:intron 25.0%
! ATGTAAAAAAATTCACTGGT+AGG + chr1_1:78578315-78578334 Msa0046410:intron 25.0%
! ATGGAACATTAGATTATCTA+AGG + chr1_1:78578704-78578723 Msa0046410:CDS 25.0%
!!! TGGAAATTTTTTAAGCAACT+TGG - chr1_1:78578758-78578777 None:intergenic 25.0%
! AAAAAATTTCCAGAAGTTCT+TGG + chr1_1:78578766-78578785 Msa0046410:CDS 25.0%
!!! GGGTTTTAATATTGATTGTA+AGG + chr1_1:78578897-78578916 Msa0046410:CDS 25.0%
!!! GCAATTCTGTCTTTTATTTA+CGG - chr1_1:78579045-78579064 None:intergenic 25.0%
! AAATAAAAGACAGAATTGCA+TGG + chr1_1:78579046-78579065 Msa0046410:three_prime_UTR 25.0%
!!! AATGAATTATTTCTGCAACT+TGG - chr1_1:78579089-78579108 None:intergenic 25.0%
! TATGAATTGATGAAGTTACT+TGG + chr1_1:78579162-78579181 Msa0046410:three_prime_UTR 25.0%
! GTCAAACAGGATTTATTATT+TGG + chr1_1:78579369-78579388 Msa0046410:three_prime_UTR 25.0%
!!! TCAAAAACTCACTGTTTTTG+TGG - chr1_1:78575734-78575753 None:intergenic 30.0%
!! GTTTTTGGGAAGAAATAAAG+AGG - chr1_1:78575874-78575893 None:intergenic 30.0%
CCGGTAATAATTTGAAAAAG+TGG - chr1_1:78576010-78576029 None:intergenic 30.0%
!!! TGTTGTTTTTTTGCTAATGC+AGG + chr1_1:78576118-78576137 Msa0046410:intron 30.0%
!!! TTTTTTTGCTAATGCAGGTA+TGG + chr1_1:78576123-78576142 Msa0046410:intron 30.0%
!!! ATTTATTTTCTAGTGGGTTG+TGG + chr1_1:78576229-78576248 Msa0046410:intron 30.0%
! TCATGTTTAGAAAGGTGTAA+TGG + chr1_1:78576312-78576331 Msa0046410:intron 30.0%
! CATGTTTAGAAAGGTGTAAT+GGG + chr1_1:78576313-78576332 Msa0046410:intron 30.0%
! ATGTTTAGAAAGGTGTAATG+GGG + chr1_1:78576314-78576333 Msa0046410:intron 30.0%
AATGGGGTAAAATGAATTGA+AGG + chr1_1:78576330-78576349 Msa0046410:intron 30.0%
!! CTGACTGTTTTATTGAATTG+TGG + chr1_1:78576356-78576375 Msa0046410:intron 30.0%
CTCTGCGTATATTCATAAAT+TGG - chr1_1:78576395-78576414 None:intergenic 30.0%
CAATTTATGAATATACGCAG+AGG + chr1_1:78576393-78576412 Msa0046410:intron 30.0%
!!! AGGAGAGAACTTTTAGAATA+AGG + chr1_1:78576428-78576447 Msa0046410:intron 30.0%
!!! GGAGAGAACTTTTAGAATAA+GGG + chr1_1:78576429-78576448 Msa0046410:intron 30.0%
!!! AACTTTTAGAATAAGGGAAG+TGG + chr1_1:78576435-78576454 Msa0046410:intron 30.0%
! ATATTCTAGAAGAATCGATG+GGG - chr1_1:78576606-78576625 None:intergenic 30.0%
! CATATTCTAGAAGAATCGAT+GGG - chr1_1:78576607-78576626 None:intergenic 30.0%
!! TTAAAGAGGAAGGTATTGTA+AGG - chr1_1:78576673-78576692 None:intergenic 30.0%
!! AAAGTCGATTTTAAAGAGGA+AGG - chr1_1:78576683-78576702 None:intergenic 30.0%
TTCCAATTATTGCCAAGATT+GGG - chr1_1:78576995-78577014 None:intergenic 30.0%
TTTCCAATTATTGCCAAGAT+TGG - chr1_1:78576996-78577015 None:intergenic 30.0%
ATCTTGGCAATAATTGGAAA+TGG + chr1_1:78576996-78577015 Msa0046410:intron 30.0%
!! TCTCTGTCTTCTGAAATTAA+AGG + chr1_1:78577137-78577156 Msa0046410:intron 30.0%
!! TGTCTTCTGAAATTAAAGGT+TGG + chr1_1:78577141-78577160 Msa0046410:intron 30.0%
ATAGTAATGATGTAGGTGAA+TGG + chr1_1:78577252-78577271 Msa0046410:intron 30.0%
TGAATTTGGTTATTCTGTGT+TGG + chr1_1:78577287-78577306 Msa0046410:intron 30.0%
! CAATTGTTGATGAAAAGCAT+TGG - chr1_1:78577357-78577376 None:intergenic 30.0%
TACAAAATGTTGTCAAATGG+CGG - chr1_1:78577632-78577651 None:intergenic 30.0%
TTTGTACTAAATAGTGCATC+GGG + chr1_1:78577646-78577665 Msa0046410:intron 30.0%
! GTTTTACGGTGACTATTATA+TGG + chr1_1:78577694-78577713 Msa0046410:intron 30.0%
! ATATTTAACTTCCCATAGAC+TGG + chr1_1:78577832-78577851 Msa0046410:intron 30.0%
GACTTTAAATTCCAGTCTAT+GGG - chr1_1:78577846-78577865 None:intergenic 30.0%
! TTAAAGTCCCAATGTCTTTT+AGG + chr1_1:78577858-78577877 Msa0046410:intron 30.0%
ACAAAGTCCTAAAAGACATT+GGG - chr1_1:78577868-78577887 None:intergenic 30.0%
TACAAAGTCCTAAAAGACAT+TGG - chr1_1:78577869-78577888 None:intergenic 30.0%
! TCATGGTTTCATACTTTTGT+TGG + chr1_1:78577903-78577922 Msa0046410:intron 30.0%
AGCTAATAGCCTAATATGTA+TGG - chr1_1:78577964-78577983 None:intergenic 30.0%
TCTTCAACATACCTAGATAT+AGG + chr1_1:78578090-78578109 Msa0046410:intron 30.0%
ATGACATGTAACCTATATCT+AGG - chr1_1:78578104-78578123 None:intergenic 30.0%
! AAGATTTTTGAATTCTGCTG+TGG + chr1_1:78578158-78578177 Msa0046410:intron 30.0%
AATGTTACAATTTCCAACTC+TGG - chr1_1:78578288-78578307 None:intergenic 30.0%
AAAAATCTGATATTTGGCGA+TGG - chr1_1:78578427-78578446 None:intergenic 30.0%
CTTGGCAAAAATCTGATATT+TGG - chr1_1:78578433-78578452 None:intergenic 30.0%
TAATCTCAAGTGATGAAGAT+CGG + chr1_1:78578530-78578549 Msa0046410:CDS 30.0%
!! AAGATACTTGGAAAAGCATT+TGG + chr1_1:78578616-78578635 Msa0046410:CDS 30.0%
AAATTACATCCAAGAACTTC+TGG - chr1_1:78578778-78578797 None:intergenic 30.0%
AGCTAATATAAAGATCCTGA+AGG + chr1_1:78578813-78578832 Msa0046410:CDS 30.0%
GTATTGAAGGAAAATCTCTT+AGG + chr1_1:78578845-78578864 Msa0046410:CDS 30.0%
! CTTCGAAATCCAAAAGTTTT+GGG + chr1_1:78578877-78578896 Msa0046410:CDS 30.0%
!! ATTCTGTCTTTTATTTACGG+TGG - chr1_1:78579042-78579061 None:intergenic 30.0%
AATTCATTCTCAAGTTAACG+CGG + chr1_1:78579101-78579120 Msa0046410:three_prime_UTR 30.0%
TCATGATAATATCAGAGACA+TGG - chr1_1:78579405-78579424 None:intergenic 30.0%
! AAAGAGGCATGAGATTGAAA+AGG - chr1_1:78575858-78575877 None:intergenic 35.0%
! ATGTCTTCAATCTGAAGTGT+CGG - chr1_1:78575947-78575966 None:intergenic 35.0%
ATATCGACACATGTGATATG+CGG + chr1_1:78575968-78575987 Msa0046410:intron 35.0%
TATGTGTGTAGTGTAGGAAA+TGG + chr1_1:78576260-78576279 Msa0046410:intron 35.0%
AAGATCATTCAGCCTTGAAT+TGG + chr1_1:78576534-78576553 Msa0046410:intron 35.0%
! GCATATTCTAGAAGAATCGA+TGG - chr1_1:78576608-78576627 None:intergenic 35.0%
ATGACAAAGGAAGAGAAGAT+AGG - chr1_1:78576638-78576657 None:intergenic 35.0%
!! GGACAAAGTCGATTTTAAAG+AGG - chr1_1:78576687-78576706 None:intergenic 35.0%
! TAAAATCGACTTTGTCCTCA+AGG + chr1_1:78576690-78576709 Msa0046410:intron 35.0%
TGAAGTTGGGATAATGATGT+AGG + chr1_1:78576714-78576733 Msa0046410:intron 35.0%
GGGATAATGATGTAGGATAT+TGG + chr1_1:78576721-78576740 Msa0046410:intron 35.0%
! TCATAGGAAGAGGTATGTAA+AGG + chr1_1:78576873-78576892 Msa0046410:intron 35.0%
TCTCTTAAACAGTTTCAGCT+GGG + chr1_1:78576908-78576927 Msa0046410:intron 35.0%
AGCTGGGATATGTAAAAAAC+TGG + chr1_1:78576924-78576943 Msa0046410:intron 35.0%
GCTGGGATATGTAAAAAACT+GGG + chr1_1:78576925-78576944 Msa0046410:intron 35.0%
TCCAATTATTGCCAAGATTG+GGG - chr1_1:78576994-78577013 None:intergenic 35.0%
! CAGAGATGCTTTATTGAATC+TGG - chr1_1:78577123-78577142 None:intergenic 35.0%
AGTAACGATATGCTAGTTGA+TGG + chr1_1:78577331-78577350 Msa0046410:intron 35.0%
TACTACATCCATAGCCAAAA+TGG - chr1_1:78577396-78577415 None:intergenic 35.0%
AATCCAATAAGCTGGTTGAA+TGG + chr1_1:78577441-78577460 Msa0046410:intron 35.0%
AGAATGCGTAGCAGATTAAT+TGG + chr1_1:78577501-78577520 Msa0046410:intron 35.0%
!! GGTTATCTTTCTTTGGAGTT+AGG + chr1_1:78577522-78577541 Msa0046410:intron 35.0%
TTGTACTAAATAGTGCATCG+GGG + chr1_1:78577647-78577666 Msa0046410:intron 35.0%
!! CTCCATTCTGATTCGTTTTA+CGG + chr1_1:78577680-78577699 Msa0046410:intron 35.0%
GTGACTATTATATGGAGAGT+GGG + chr1_1:78577702-78577721 Msa0046410:intron 35.0%
GGACTTTAAATTCCAGTCTA+TGG - chr1_1:78577847-78577866 None:intergenic 35.0%
!!! GAATACAGTTTTAGTTCTGG+AGG + chr1_1:78578001-78578020 Msa0046410:intron 35.0%
GTTCTTTGATGAATATCAGC+TGG - chr1_1:78578129-78578148 None:intergenic 35.0%
ACTTATGCATACAGATCCAA+AGG + chr1_1:78578262-78578281 Msa0046410:intron 35.0%
CGTACACAATATTTAGACTC+TGG - chr1_1:78578365-78578384 None:intergenic 35.0%
GATATTTGGCGATGGAATAA+TGG - chr1_1:78578419-78578438 None:intergenic 35.0%
!! ATGGTTGGTAGAATGATTTG+AGG - chr1_1:78578476-78578495 None:intergenic 35.0%
CAAATCATTCTACCAACCAT+TGG + chr1_1:78578476-78578495 Msa0046410:CDS 35.0%
TAACTTCGACGATGAAGAAA+AGG + chr1_1:78578591-78578610 Msa0046410:CDS 35.0%
GAAGAAAAGGACAAGATACT+TGG + chr1_1:78578604-78578623 Msa0046410:CDS 35.0%
CCATTTACTGCCTCAAATTT+GGG - chr1_1:78578688-78578707 None:intergenic 35.0%
TCCATTTACTGCCTCAAATT+TGG - chr1_1:78578689-78578708 None:intergenic 35.0%
! CCAAAACTTTTGGATTTCGA+AGG - chr1_1:78578879-78578898 None:intergenic 35.0%
! CCTTCGAAATCCAAAAGTTT+TGG + chr1_1:78578876-78578895 Msa0046410:CDS 35.0%
TGATTGTAAGGGAGATTGTA+AGG + chr1_1:78578909-78578928 Msa0046410:CDS 35.0%
!! TCTTTTATTTACGGTGGAGA+GGG - chr1_1:78579036-78579055 None:intergenic 35.0%
! ATTGCATGGTTCTCACATTT+TGG + chr1_1:78579060-78579079 Msa0046410:three_prime_UTR 35.0%
TGATGAAGTTACTTGGACAA+TGG + chr1_1:78579169-78579188 Msa0046410:three_prime_UTR 35.0%
! TGACATCATCAATAGGTTGA+GGG - chr1_1:78579353-78579372 None:intergenic 35.0%
TTGACATCATCAATAGGTTG+AGG - chr1_1:78579354-78579373 None:intergenic 35.0%
!! ACCTATTGATGATGTCAAAC+AGG + chr1_1:78579356-78579375 Msa0046410:three_prime_UTR 35.0%
TCCTGTTTGACATCATCAAT+AGG - chr1_1:78579360-78579379 None:intergenic 35.0%
TATGGTATCGTGCAAGTGAA+TGG + chr1_1:78575755-78575774 Msa0046410:five_prime_UTR 40.0%
TTGAAGCTAACTAACCAGAG+CGG - chr1_1:78575835-78575854 None:intergenic 40.0%
TATTACCGGTATCAACGTGT+TGG + chr1_1:78576021-78576040 Msa0046410:intron 40.0%
TTTGCTAATGCAGGTATGGT+TGG + chr1_1:78576127-78576146 Msa0046410:intron 40.0%
TTGCTAATGCAGGTATGGTT+GGG + chr1_1:78576128-78576147 Msa0046410:intron 40.0%
!!! TATTTTCTAGTGGGTTGTGG+TGG + chr1_1:78576232-78576251 Msa0046410:intron 40.0%
GCTTTGTATGTGTGTAGTGT+AGG + chr1_1:78576254-78576273 Msa0046410:intron 40.0%
TATGAATATACGCAGAGGAG+AGG + chr1_1:78576398-78576417 Msa0046410:intron 40.0%
TTCTCTTCCTTTGTCATAGC+TGG + chr1_1:78576641-78576660 Msa0046410:intron 40.0%
TTTGTCCTCAAGGTTGAAGT+TGG + chr1_1:78576700-78576719 Msa0046410:intron 40.0%
TTGTCCTCAAGGTTGAAGTT+GGG + chr1_1:78576701-78576720 Msa0046410:intron 40.0%
TTATCCCAACTTCAACCTTG+AGG - chr1_1:78576708-78576727 None:intergenic 40.0%
ATATTGGCATAGTCCTCACA+GGG + chr1_1:78576737-78576756 Msa0046410:intron 40.0%
TGTGATAGGACCTAATTCAC+TGG + chr1_1:78576847-78576866 Msa0046410:intron 40.0%
CCTATGACAACCAGTGAATT+AGG - chr1_1:78576860-78576879 None:intergenic 40.0%
! CCTAATTCACTGGTTGTCAT+AGG + chr1_1:78576857-78576876 Msa0046410:intron 40.0%
GTCTCTTAAACAGTTTCAGC+TGG + chr1_1:78576907-78576926 Msa0046410:intron 40.0%
AATTATTGCCAAGATTGGGG+TGG - chr1_1:78576991-78577010 None:intergenic 40.0%
ACCCCAATCTTGGCAATAAT+TGG + chr1_1:78576990-78577009 Msa0046410:intron 40.0%
!!! AGAAGTTGCCATTTTGGCTA+TGG + chr1_1:78577385-78577404 Msa0046410:intron 40.0%
TTGCTCACAATCCAATAAGC+TGG + chr1_1:78577433-78577452 Msa0046410:intron 40.0%
TGACCATTCAACCAGCTTAT+TGG - chr1_1:78577447-78577466 None:intergenic 40.0%
ATCTATGATTGACAACGCTG+AGG - chr1_1:78577549-78577568 None:intergenic 40.0%
CACCGTAAAACGAATCAGAA+TGG - chr1_1:78577685-78577704 None:intergenic 40.0%
GGTGACTATTATATGGAGAG+TGG + chr1_1:78577701-78577720 Msa0046410:intron 40.0%
! TTTTTACAGCTCCTTCTACG+AGG + chr1_1:78577745-78577764 Msa0046410:intron 40.0%
TGTTGAAAATGCCTCGTAGA+AGG - chr1_1:78577759-78577778 None:intergenic 40.0%
!!! ACAGTTTTAGTTCTGGAGGT+TGG + chr1_1:78578005-78578024 Msa0046410:intron 40.0%
!!! TCTGGAGGTTGGCTTTTATA+CGG + chr1_1:78578016-78578035 Msa0046410:intron 40.0%
AAATTCACTGGTAGGACTGT+AGG + chr1_1:78578323-78578342 Msa0046410:intron 40.0%
GGACTGTAGGAGGATAATAA+TGG + chr1_1:78578336-78578355 Msa0046410:intron 40.0%
AATATTGTGTACGATCGTGC+AGG + chr1_1:78578372-78578391 Msa0046410:intron 40.0%
! TGGCGATGGAATAATGGAAA+AGG - chr1_1:78578413-78578432 None:intergenic 40.0%
!! CACTTTGCTTTTGCAAGACT+TGG - chr1_1:78578451-78578470 None:intergenic 40.0%
CAAGTCTTGCAAAAGCAAAG+TGG + chr1_1:78578449-78578468 Msa0046410:CDS 40.0%
AGAACGCAATATCCAATGGT+TGG - chr1_1:78578491-78578510 None:intergenic 40.0%
TCGTAGAACGCAATATCCAA+TGG - chr1_1:78578495-78578514 None:intergenic 40.0%
TGATGAAGATCGGAGTATGT+GGG + chr1_1:78578540-78578559 Msa0046410:CDS 40.0%
CCTTGTTCATTCTCCTTACT+GGG + chr1_1:78578639-78578658 Msa0046410:CDS 40.0%
CTTGTTCATTCTCCTTACTG+GGG + chr1_1:78578640-78578659 Msa0046410:CDS 40.0%
GAAGGAAGTTCCCAAATTTG+AGG + chr1_1:78578675-78578694 Msa0046410:CDS 40.0%
! CCCAAATTTGAGGCAGTAAA+TGG + chr1_1:78578685-78578704 Msa0046410:CDS 40.0%
! CTTTTGGATTTCGAAGGAGA+AGG - chr1_1:78578873-78578892 None:intergenic 40.0%
! TGGGTTCGATTCTAGTTGAT+TGG + chr1_1:78578949-78578968 Msa0046410:exon 40.0%
GAACAATGATGTTATGCTGC+AGG - chr1_1:78579004-78579023 None:intergenic 40.0%
!! GTCTTTTATTTACGGTGGAG+AGG - chr1_1:78579037-78579056 None:intergenic 40.0%
GAACGAAGATACTCACAGTA+AGG + chr1_1:78579191-78579210 Msa0046410:three_prime_UTR 40.0%
AATATCAGAGACATGGAAGC+TGG - chr1_1:78579398-78579417 None:intergenic 40.0%
! TGGTGAGAGCGTAGATGATA+TGG + chr1_1:78575775-78575794 Msa0046410:exon 45.0%
AGACACCAACACGTTGATAC+CGG - chr1_1:78576029-78576048 None:intergenic 45.0%
AGCACAGTTCTTGTGTTGCA+AGG + chr1_1:78576189-78576208 Msa0046410:CDS 45.0%
AGCAACGGCTAACCAATTCA+AGG - chr1_1:78576549-78576568 None:intergenic 45.0%
! TTCTAGAAGAATCGATGGGG+AGG - chr1_1:78576603-78576622 None:intergenic 45.0%
GATATTGGCATAGTCCTCAC+AGG + chr1_1:78576736-78576755 Msa0046410:intron 45.0%
GGAAACTAATGTTCCCTGTG+AGG - chr1_1:78576753-78576772 None:intergenic 45.0%
TTGTTCAGTGGGAACACTTG+GGG - chr1_1:78576775-78576794 None:intergenic 45.0%
CTTGTTCAGTGGGAACACTT+GGG - chr1_1:78576776-78576795 None:intergenic 45.0%
TCTTGTTCAGTGGGAACACT+TGG - chr1_1:78576777-78576796 None:intergenic 45.0%
ACAGCAAGCTCTTGTTCAGT+GGG - chr1_1:78576786-78576805 None:intergenic 45.0%
GCTGTCCTTGAATGATCTCA+CGG + chr1_1:78576801-78576820 Msa0046410:intron 45.0%
CTGTCCTTGAATGATCTCAC+GGG + chr1_1:78576802-78576821 Msa0046410:intron 45.0%
! TCACTGGTTGTCATAGGAAG+AGG + chr1_1:78576863-78576882 Msa0046410:intron 45.0%
GTATTCTACCACCCCAATCT+TGG + chr1_1:78576980-78576999 Msa0046410:intron 45.0%
!! GAGTGCAGAAGTTGCCATTT+TGG + chr1_1:78577379-78577398 Msa0046410:intron 45.0%
! CAATTTCCAACTCTGGCCTT+TGG - chr1_1:78578281-78578300 None:intergenic 45.0%
GTGATGAAGATCGGAGTATG+TGG + chr1_1:78578539-78578558 Msa0046410:CDS 45.0%
! GCCTTGTTCATTCTCCTTAC+TGG + chr1_1:78578638-78578657 Msa0046410:CDS 45.0%
CCCAGTAAGGAGAATGAACA+AGG - chr1_1:78578642-78578661 None:intergenic 45.0%
TAAAGATCCTGAAGGAGCAG+TGG + chr1_1:78578821-78578840 Msa0046410:CDS 45.0%
!! AAGGAGCAGTGGAGTATTGA+AGG + chr1_1:78578832-78578851 Msa0046410:CDS 45.0%
TTTATTTACGGTGGAGAGGG+CGG - chr1_1:78579033-78579052 None:intergenic 45.0%
CGACTTCGCAAGTATGCATA+TGG + chr1_1:78579125-78579144 Msa0046410:three_prime_UTR 45.0%
! CAACGTGTTGGTGTCTGTGT+TGG + chr1_1:78576033-78576052 Msa0046410:intron 50.0%
GCAGAATCAGTAGCGAGAAG+AGG - chr1_1:78576169-78576188 None:intergenic 50.0%
ATATACGCAGAGGAGAGGAG+AGG + chr1_1:78576403-78576422 Msa0046410:intron 50.0%
GAAGCTGCCAGCTATGACAA+AGG - chr1_1:78576651-78576670 None:intergenic 50.0%
TGTTCAGTGGGAACACTTGG+GGG - chr1_1:78576774-78576793 None:intergenic 50.0%
GACAGCAAGCTCTTGTTCAG+TGG - chr1_1:78576787-78576806 None:intergenic 50.0%
CAGACCCGTGAGATCATTCA+AGG - chr1_1:78576809-78576828 None:intergenic 50.0%
CGGGTCTGTAAAACTGCTAC+TGG + chr1_1:78576821-78576840 Msa0046410:intron 50.0%
! ACTGCTACTGGCTGTGTGAT+AGG + chr1_1:78576833-78576852 Msa0046410:intron 50.0%
! CAAGCTCTAGCATCTTGCAG+AGG - chr1_1:78576961-78576980 None:intergenic 50.0%
!! ACTGCAGGTTGGTGGTGATA+AGG - chr1_1:78577042-78577061 None:intergenic 50.0%
AAGACAGGATGTGCAACTGC+AGG - chr1_1:78577057-78577076 None:intergenic 50.0%
!! TTCTGTGTTGGCTCGCTAAG+TGG + chr1_1:78577299-78577318 Msa0046410:intron 50.0%
! TTGGCTCGCTAAGTGGAAAC+TGG + chr1_1:78577306-78577325 Msa0046410:intron 50.0%
GGTCAGCGTTGTAGTGTTCA+TGG + chr1_1:78577462-78577481 Msa0046410:intron 50.0%
ACAGATCCAAAGGCCAGAGT+TGG + chr1_1:78578272-78578291 Msa0046410:intron 50.0%
TTCACTGGTAGGACTGTAGG+AGG + chr1_1:78578326-78578345 Msa0046410:intron 50.0%
TCACGATCTTCTCCCCAGTA+AGG - chr1_1:78578655-78578674 None:intergenic 50.0%
CAATACTCCACTGCTCCTTC+AGG - chr1_1:78578831-78578850 None:intergenic 50.0%
AGGCACAATGCACTAGATGC+TGG + chr1_1:78578929-78578948 Msa0046410:CDS 50.0%
GGCACAATGCACTAGATGCT+GGG + chr1_1:78578930-78578949 Msa0046410:CDS 50.0%
CTGGGTTCCAGCTTTCAAAG+TGG + chr1_1:78579451-78579470 Msa0046410:three_prime_UTR 50.0%
AACTAACCAGAGCGGCGAGA+AGG - chr1_1:78575827-78575846 None:intergenic 55.0%
! CGTGTTGGTGTCTGTGTTGG+TGG + chr1_1:78576036-78576055 Msa0046410:intron 55.0%
AGAATCCAGGAAGCAGGGAG+AGG - chr1_1:78576577-78576596 None:intergenic 55.0%
CTCCCTGCTTCCTGGATTCT+CGG + chr1_1:78576577-78576596 Msa0046410:intron 55.0%
! GATGTGCAACTGCAGGTTGG+TGG - chr1_1:78577050-78577069 None:intergenic 55.0%
CAGGATGTGCAACTGCAGGT+TGG - chr1_1:78577053-78577072 None:intergenic 55.0%
TTTGAGCCCTCGTGACCTGT+TGG + chr1_1:78577075-78577094 Msa0046410:intron 55.0%
TTGAGCCCTCGTGACCTGTT+GGG + chr1_1:78577076-78577095 Msa0046410:intron 55.0%
TAACTTGACCCGCACCCAAC+AGG - chr1_1:78577093-78577112 None:intergenic 55.0%
ATCGTGCAGGCTGATCTTGC+TGG + chr1_1:78578385-78578404 Msa0046410:intron 55.0%
CTGGGGAGAAGATCGTGAGA+AGG + chr1_1:78578657-78578676 Msa0046410:CDS 55.0%
! CAGGGAGAGGAGTGCAGCAA+CGG - chr1_1:78576564-78576583 None:intergenic 60.0%
GGCCGAGAATCCAGGAAGCA+GGG - chr1_1:78576582-78576601 None:intergenic 60.0%
AGGCCGAGAATCCAGGAAGC+AGG - chr1_1:78576583-78576602 None:intergenic 60.0%
GGTCACGAGGGCTCAAAGAC+AGG - chr1_1:78577072-78577091 None:intergenic 60.0%
CCAGAGCGGCGAGAAGGTGA+AGG - chr1_1:78575821-78575840 None:intergenic 65.0%
CCTTCACCTTCTCGCCGCTC+TGG + chr1_1:78575818-78575837 Msa0046410:CDS 65.0%
CGCAGAGGAGAGGAGAGGAG+AGG + chr1_1:78576408-78576427 Msa0046410:intron 65.0%
GCACTCCTCTCCCTGCTTCC+TGG + chr1_1:78576569-78576588 Msa0046410:intron 65.0%
GATGGGGAGGCCGAGAATCC+AGG - chr1_1:78576590-78576609 None:intergenic 65.0%
CCGCACCCAACAGGTCACGA+GGG - chr1_1:78577084-78577103 None:intergenic 65.0%
CCCTCGTGACCTGTTGGGTG+CGG + chr1_1:78577081-78577100 Msa0046410:intron 65.0%
CCTCGTGACCTGTTGGGTGC+GGG + chr1_1:78577082-78577101 Msa0046410:intron 65.0%
CCCGCACCCAACAGGTCACG+AGG - chr1_1:78577085-78577104 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78575705 78579478 78575705 ID=Msa0046410;Name=Msa0046410
chr1_1 mRNA 78575705 78579478 78575705 ID=Msa0046410-mRNA-1;Parent=Msa0046410;Name=Msa0046410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|0.5|0.66|1|1|1|3|515|224
chr1_1 exon 78575705 78575839 78575705 ID=Msa0046410-mRNA-1:exon:27025;Parent=Msa0046410-mRNA-1
chr1_1 exon 78576157 78576210 78576157 ID=Msa0046410-mRNA-1:exon:27026;Parent=Msa0046410-mRNA-1
chr1_1 exon 78578394 78579478 78578394 ID=Msa0046410-mRNA-1:exon:27027;Parent=Msa0046410-mRNA-1
chr1_1 five_prime_UTR 78575705 78575788 78575705 ID=Msa0046410-mRNA-1:five_prime_utr;Parent=Msa0046410-mRNA-1
chr1_1 CDS 78575789 78575839 78575789 ID=Msa0046410-mRNA-1:cds;Parent=Msa0046410-mRNA-1
chr1_1 CDS 78576157 78576210 78576157 ID=Msa0046410-mRNA-1:cds;Parent=Msa0046410-mRNA-1
chr1_1 CDS 78578394 78578963 78578394 ID=Msa0046410-mRNA-1:cds;Parent=Msa0046410-mRNA-1
chr1_1 three_prime_UTR 78578964 78579478 78578964 ID=Msa0046410-mRNA-1:three_prime_utr;Parent=Msa0046410-mRNA-1
Gene Sequence

>Msa0046410

ATGATATGGAGTGTCTCAACTTCGCATCGCCTTCACCTTCTCGCCGCTCTGTTGAATTCTCCTCTTCTCGCTACTGATTCTGCAGCACAGTTCTTGTGTTGCAAGGCTGATCTTGCTGGTGCCTTTTCCATTATTCCATCGCCAAATATCAGATTTTTGCCAAGTCTTGCAAAAGCAAAGTGGACCTCAAATCATTCTACCAACCATTGGATATTGCGTTCTACGACACAGATAGAGAATGTAATCTCAAGTGATGAAGATCGGAGTATGTGGGAAGCATGTAGACAAGCTCTTTCTGCATTTAACTTCGACGATGAAGAAAAGGACAAGATACTTGGAAAAGCATTTGGCCTTGTTCATTCTCCTTACTGGGGAGAAGATCGTGAGAAGGAAGTTCCCAAATTTGAGGCAGTAAATGGAACATTAGATTATCTAAGGAGTTTAAATCTTTCTGACGATGATTTGTCCAAGTTGCTTAAAAAATTTCCAGAAGTTCTTGGATGTAATTTAGAAGAAGAGTTGAAAGCTAATATAAAGATCCTGAAGGAGCAGTGGAGTATTGAAGGAAAATCTCTTAGGAACCTTCTCCTTCGAAATCCAAAAGTTTTGGGTTTTAATATTGATTGTAAGGGAGATTGTAAGGCACAATGCACTAGATGCTGGGTTCGATTCTAG

Protein sequence

>Msa0046410

MIWSVSTSHRLHLLAALLNSPLLATDSAAQFLCCKADLAGAFSIIPSPNIRFLPSLAKAKWTSNHSTNHWILRSTTQIENVISSDEDRSMWEACRQALSAFNFDDEEKDKILGKAFGLVHSPYWGEDREKEVPKFEAVNGTLDYLRSLNLSDDDLSKLLKKFPEVLGCNLEEELKANIKILKEQWSIEGKSLRNLLLRNPKVLGFNIDCKGDCKAQCTRCWVRF*