AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116260 MtrunA17_Chr1g0200511 91.855 221 18 0 4 224 8 228 1.12e-149 415
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116260 AT4G09620.1 55.814 215 91 2 11 224 1 212 1.88e-79 237
Msa0116260 AT4G09620.3 55.814 215 91 2 11 224 1 212 1.88e-79 237
Msa0116260 AT4G09620.2 56.338 213 89 2 13 224 1 210 5.36e-79 236

Find 68 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTTGTTCATTCTCCTTAC+TGG 0.079985 1_3:-35120511 Msa0116260:CDS
GTCAAACAGGATTTATTATT+TGG 0.092352 1_3:-35119780 Msa0116260:three_prime_UTR
TCCATTTACTGCCTCAAATT+TGG 0.102598 1_3:+35120463 None:intergenic
AACAGTGAGTTTCTTGATTA+TGG 0.154781 1_3:-35123433 Msa0116260:five_prime_UTR
ATTGCATGGTTCTCACATTT+TGG 0.171163 1_3:-35120089 Msa0116260:three_prime_UTR
CCTTCGAAATCCAAAAGTTT+TGG 0.174584 1_3:-35120273 Msa0116260:CDS
CCCAAATTTGAGGCAGTAAA+TGG 0.185063 1_3:-35120464 Msa0116260:CDS
GTCTATTTCCTCTTAACTTT+TGG 0.228846 1_3:+35123467 None:intergenic
AAATTACATCCAAGAACTTC+TGG 0.252185 1_3:+35120374 None:intergenic
ATATTAAAACCCAAAACTTT+TGG 0.261186 1_3:+35120263 None:intergenic
CCATTTACTGCCTCAAATTT+GGG 0.285378 1_3:+35120464 None:intergenic
CCTTGTTCATTCTCCTTACT+GGG 0.302250 1_3:-35120510 Msa0116260:CDS
GATATTTGGCGATGGAATAA+TGG 0.339231 1_3:+35120733 None:intergenic
TGGTGAGAGCGTAGATGATA+TGG 0.359980 1_3:-35123395 Msa0116260:exon
CAATACTCCACTGCTCCTTC+AGG 0.365711 1_3:+35120321 None:intergenic
CTCAACCACCAAAAGTTAAG+AGG 0.388853 1_3:-35123475 None:intergenic
AAGATACTTGGAAAAGCATT+TGG 0.395197 1_3:-35120533 Msa0116260:CDS
ATGGAACATTAGATTATCTA+AGG 0.403508 1_3:-35120445 Msa0116260:CDS
ATCGTGCAGGCTGATCTTGC+TGG 0.416752 1_3:-35120764 Msa0116260:intron
ATTGTAATTTGTATCAACTT+AGG 0.421605 1_3:+35119847 None:intergenic
ACCTATTGATGATGTCAAAC+AGG 0.424650 1_3:-35119793 Msa0116260:three_prime_UTR
CGACTTCGCAAGTATGCATA+TGG 0.429873 1_3:-35120024 Msa0116260:three_prime_UTR
TGATTGTAAGGGAGATTGTA+AGG 0.441638 1_3:-35120240 Msa0116260:CDS
GTATTGAAGGAAAATCTCTT+AGG 0.453881 1_3:-35120304 Msa0116260:CDS
TCCTGTTTGACATCATCAAT+AGG 0.454728 1_3:+35119792 None:intergenic
AGGCACAATGCACTAGATGC+TGG 0.458361 1_3:-35120220 Msa0116260:CDS
CCTTCACCTTCTCGCCGCTC+TGG 0.459797 1_3:-35123352 Msa0116260:intron
TAACTTCGACGATGAAGAAA+AGG 0.469350 1_3:-35120558 Msa0116260:CDS
TATGAATTGATGAAGTTACT+TGG 0.469958 1_3:-35119987 Msa0116260:three_prime_UTR
AAGGAGCAGTGGAGTATTGA+AGG 0.472993 1_3:-35120317 Msa0116260:CDS
TGGGTTCGATTCTAGTTGAT+TGG 0.477953 1_3:-35120200 Msa0116260:exon
GAAGAAAAGGACAAGATACT+TGG 0.482017 1_3:-35120545 Msa0116260:CDS
AATGAATTATTTCTGCAACT+TGG 0.490911 1_3:+35120063 None:intergenic
AAATAAACCACTTTGAAAGC+TGG 0.497008 1_3:+35119691 None:intergenic
TGGCGATGGAATAATGGAAA+AGG 0.502232 1_3:+35120739 None:intergenic
GTGATGAAGATCGGAGTATG+TGG 0.505034 1_3:-35120610 Msa0116260:CDS
TTGACATCATCAATAGGTTG+AGG 0.508507 1_3:+35119798 None:intergenic
AATATCAGAGACATGGAAGC+TGG 0.514777 1_3:+35119754 None:intergenic
TCACGATCTTCTCCCCAGTA+AGG 0.522126 1_3:+35120497 None:intergenic
TGACATCATCAATAGGTTGA+GGG 0.525521 1_3:+35119799 None:intergenic
CAAATCATTCTACCAACCAT+TGG 0.536249 1_3:-35120673 Msa0116260:CDS
TGATGAAGTTACTTGGACAA+TGG 0.538545 1_3:-35119980 Msa0116260:three_prime_UTR
GAACAATGATGTTATGCTGC+AGG 0.558364 1_3:+35120148 None:intergenic
TATGGTATCGTGCAAGTGAA+TGG 0.560960 1_3:-35123415 Msa0116260:five_prime_UTR
GGCACAATGCACTAGATGCT+GGG 0.562129 1_3:-35120219 Msa0116260:CDS
GAAGGAAGTTCCCAAATTTG+AGG 0.566069 1_3:-35120474 Msa0116260:CDS
GAACGAAGATACTCACAGTA+AGG 0.568225 1_3:-35119958 Msa0116260:three_prime_UTR
AGCACAGTTCTTGTGTTGCA+AGG 0.570294 1_3:-35122957 Msa0116260:intron
TAATCTCAAGTGATGAAGAT+CGG 0.572690 1_3:-35120619 Msa0116260:CDS
GCAGAATCAGTAGCGAGAAG+AGG 0.578077 1_3:+35122980 None:intergenic
TTTATTTACGGTGGAGAGGG+CGG 0.581343 1_3:+35120119 None:intergenic
CCAGAGCGGCGAGAAGGTGA+AGG 0.582029 1_3:+35123352 None:intergenic
CCCAGTAAGGAGAATGAACA+AGG 0.586733 1_3:+35120510 None:intergenic
AACTAACCAGAGCGGCGAGA+AGG 0.588677 1_3:+35123346 None:intergenic
CTTGTTCATTCTCCTTACTG+GGG 0.596220 1_3:-35120509 Msa0116260:CDS
TAAAGATCCTGAAGGAGCAG+TGG 0.596954 1_3:-35120328 Msa0116260:CDS
ATGGTTGGTAGAATGATTTG+AGG 0.603312 1_3:+35120676 None:intergenic
AGAACGCAATATCCAATGGT+TGG 0.612381 1_3:+35120661 None:intergenic
TCGTAGAACGCAATATCCAA+TGG 0.625607 1_3:+35120657 None:intergenic
TCATGATAATATCAGAGACA+TGG 0.627851 1_3:+35119747 None:intergenic
CTGGGTTCCAGCTTTCAAAG+TGG 0.629627 1_3:-35119698 Msa0116260:three_prime_UTR
AGCTAATATAAAGATCCTGA+AGG 0.630758 1_3:-35120336 Msa0116260:CDS
CTGGGGAGAAGATCGTGAGA+AGG 0.634124 1_3:-35120492 Msa0116260:CDS
CAAGTCTTGCAAAAGCAAAG+TGG 0.634464 1_3:-35120700 Msa0116260:CDS
TGATGAAGATCGGAGTATGT+GGG 0.637812 1_3:-35120609 Msa0116260:CDS
AAATAAAAGACAGAATTGCA+TGG 0.657141 1_3:-35120103 Msa0116260:three_prime_UTR
AATTCATTCTCAAGTTAACG+CGG 0.707885 1_3:-35120048 Msa0116260:three_prime_UTR
TTGAAGCTAACTAACCAGAG+CGG 0.785278 1_3:+35123338 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAAAGTCAATGTTTTT+GGG + chr1_3:35119877-35119896 None:intergenic 15.0%
!!! AAAAATAAAGTCAATGTTTT+TGG + chr1_3:35119878-35119897 None:intergenic 15.0%
!!! ATTTTTAAATTAATAGAGTG+AGG + chr1_3:35120513-35120532 None:intergenic 15.0%
!!! TTTTAATTGTAAAGCTTTAA+AGG - chr1_3:35121211-35121230 Msa0116260:intron 15.0%
!!! TTTAATTGTAAAGCTTTAAA+GGG - chr1_3:35121212-35121231 Msa0116260:intron 15.0%
!!! TAGATAAAATTTTAGTTATC+TGG - chr1_3:35123442-35123461 Msa0116260:five_prime_UTR 15.0%
!!! AGATAAAATTTTAGTTATCT+GGG - chr1_3:35123443-35123462 Msa0116260:five_prime_UTR 15.0%
!!! TGACTTTATTTTTCAATTTC+TGG - chr1_3:35119885-35119904 Msa0116260:three_prime_UTR 20.0%
!!! TTAGTTATGTGTTGTTTTTT+TGG - chr1_3:35120122-35120141 Msa0116260:three_prime_UTR 20.0%
!!! TCTTAACATTTATTTTCTAG+TGG - chr1_3:35120235-35120254 Msa0116260:CDS 20.0%
!!! CTTAACATTTATTTTCTAGT+GGG - chr1_3:35120236-35120255 Msa0116260:CDS 20.0%
!! TAAACTATTCATGTTTAGAA+AGG - chr1_3:35120314-35120333 Msa0116260:CDS 20.0%
!! ATTAATTGGTTATCTTTCTT+TGG - chr1_3:35121525-35121544 Msa0116260:intron 20.0%
!!! TTTTAGGACTTTGTATTTAA+AGG - chr1_3:35121884-35121903 Msa0116260:intron 20.0%
!! ATGCATAAGTTTAATATTGA+TGG + chr1_3:35122262-35122281 None:intergenic 20.0%
!!! ATATTAAAACCCAAAACTTT+TGG + chr1_3:35122899-35122918 None:intergenic 20.0%
!!! GGTTTTAATATTGATTGTAA+GGG - chr1_3:35122908-35122927 Msa0116260:intron 20.0%
!!! ATTGTAATTTGTATCAACTT+AGG + chr1_3:35123315-35123334 None:intergenic 20.0%
!!! CCACTTTTTCAAATTATTAC+CGG - chr1_3:35120004-35120023 Msa0116260:three_prime_UTR 25.0%
!!! ATTGCTGTTTTGTTACAATT+CGG - chr1_3:35120096-35120115 Msa0116260:three_prime_UTR 25.0%
!! AATGGTTTGTCTGTATTAAT+TGG - chr1_3:35120291-35120310 Msa0116260:CDS 25.0%
! TCTGCGTATATTCATAAATT+GGG + chr1_3:35120404-35120423 None:intergenic 25.0%
!! TAATATGGATGATTTGTGTA+AGG + chr1_3:35120478-35120497 None:intergenic 25.0%
! TACACAAATCATCCATATTA+AGG - chr1_3:35120478-35120497 Msa0116260:CDS 25.0%
! AGGATTATGAATCCTTAATA+TGG + chr1_3:35120493-35120512 None:intergenic 25.0%
! AATGCAAATAGTAATGATGT+AGG - chr1_3:35121255-35121274 Msa0116260:intron 25.0%
! GGTTGAAAAAAACTTGAATT+TGG - chr1_3:35121283-35121302 Msa0116260:intron 25.0%
! TAGTACAAAATGTTGTCAAA+TGG + chr1_3:35121645-35121664 None:intergenic 25.0%
!! TTTTGTACTAAATAGTGCAT+CGG - chr1_3:35121655-35121674 Msa0116260:intron 25.0%
! CAAGCATTCAAAATTAATCA+TGG - chr1_3:35121787-35121806 Msa0116260:intron 25.0%
! GTATTTAAAGGATATCTTCA+TGG - chr1_3:35121896-35121915 Msa0116260:intron 25.0%
! CTATGTTTACCATACATATT+AGG - chr1_3:35121962-35121981 Msa0116260:intron 25.0%
!! CTAAAACTGTATTCTTTTCA+AGG + chr1_3:35122005-35122024 None:intergenic 25.0%
!!! AAAGAATACAGTTTTAGTTC+TGG - chr1_3:35122008-35122027 Msa0116260:intron 25.0%
! CAAGATGTAAAAAAATTCAC+TGG - chr1_3:35122321-35122340 Msa0116260:intron 25.0%
! ATGTAAAAAAATTCACTGGT+AGG - chr1_3:35122325-35122344 Msa0116260:intron 25.0%
! ATGGAACATTAGATTATCTA+AGG - chr1_3:35122714-35122733 Msa0116260:intron 25.0%
!!! TGGAAATTTTTTAAGCAACT+TGG + chr1_3:35122768-35122787 None:intergenic 25.0%
! AAAAAATTTCCAGAAGTTCT+TGG - chr1_3:35122776-35122795 Msa0116260:intron 25.0%
!!! GGGTTTTAATATTGATTGTA+AGG - chr1_3:35122907-35122926 Msa0116260:intron 25.0%
!!! GCAATTCTGTCTTTTATTTA+CGG + chr1_3:35123055-35123074 None:intergenic 25.0%
! AAATAAAAGACAGAATTGCA+TGG - chr1_3:35123056-35123075 Msa0116260:intron 25.0%
!!! AATGAATTATTTCTGCAACT+TGG + chr1_3:35123099-35123118 None:intergenic 25.0%
! TATGAATTGATGAAGTTACT+TGG - chr1_3:35123172-35123191 Msa0116260:intron 25.0%
! GTCAAACAGGATTTATTATT+TGG - chr1_3:35123379-35123398 Msa0116260:CDS 25.0%
AACAGTGAGTTTCTTGATTA+TGG - chr1_3:35119726-35119745 Msa0116260:three_prime_UTR 30.0%
AAAGAGACATGAGATTGAAA+AGG + chr1_3:35119847-35119866 None:intergenic 30.0%
CCGGTAATAATTTGAAAAAG+TGG + chr1_3:35120007-35120026 None:intergenic 30.0%
!!! TGTTGTTTTTTTGGTAATGC+AGG - chr1_3:35120131-35120150 Msa0116260:three_prime_UTR 30.0%
!!! TTTTTTTGGTAATGCAGGTA+TGG - chr1_3:35120136-35120155 Msa0116260:three_prime_UTR 30.0%
!!! ATTTATTTTCTAGTGGGTTG+TGG - chr1_3:35120242-35120261 Msa0116260:CDS 30.0%
! TCATGTTTAGAAAGGTGTAA+TGG - chr1_3:35120322-35120341 Msa0116260:CDS 30.0%
! CATGTTTAGAAAGGTGTAAT+GGG - chr1_3:35120323-35120342 Msa0116260:CDS 30.0%
! ATGTTTAGAAAGGTGTAATG+GGG - chr1_3:35120324-35120343 Msa0116260:CDS 30.0%
AATGGGGTAAAATGAATTGA+AGG - chr1_3:35120340-35120359 Msa0116260:CDS 30.0%
!! CTGACTGTTTTATTGAATTG+TGG - chr1_3:35120366-35120385 Msa0116260:CDS 30.0%
CTCTGCGTATATTCATAAAT+TGG + chr1_3:35120405-35120424 None:intergenic 30.0%
CAATTTATGAATATACGCAG+AGG - chr1_3:35120403-35120422 Msa0116260:CDS 30.0%
!!! AGGAGAGAACTTTTAGAATA+AGG - chr1_3:35120438-35120457 Msa0116260:CDS 30.0%
!!! GGAGAGAACTTTTAGAATAA+GGG - chr1_3:35120439-35120458 Msa0116260:CDS 30.0%
!!! AACTTTTAGAATAAGGGAAG+TGG - chr1_3:35120445-35120464 Msa0116260:CDS 30.0%
! ATATTCTAGAAGAATCGATG+GGG + chr1_3:35120616-35120635 None:intergenic 30.0%
! CATATTCTAGAAGAATCGAT+GGG + chr1_3:35120617-35120636 None:intergenic 30.0%
!! TTAAAGAGGAAGGTATTGTA+AGG + chr1_3:35120683-35120702 None:intergenic 30.0%
!! AAAGTCGATTTTAAAGAGGA+AGG + chr1_3:35120693-35120712 None:intergenic 30.0%
TTCCAATTATTGCCAAGATT+GGG + chr1_3:35121005-35121024 None:intergenic 30.0%
TTTCCAATTATTGCCAAGAT+TGG + chr1_3:35121006-35121025 None:intergenic 30.0%
ATCTTGGCAATAATTGGAAA+TGG - chr1_3:35121006-35121025 Msa0116260:intron 30.0%
!! TCTCTGTCTTCTGAAATTAA+AGG - chr1_3:35121147-35121166 Msa0116260:intron 30.0%
!! TGTCTTCTGAAATTAAAGGT+TGG - chr1_3:35121151-35121170 Msa0116260:intron 30.0%
ATAGTAATGATGTAGGTGAA+TGG - chr1_3:35121262-35121281 Msa0116260:intron 30.0%
TGAATTTGGTTATTCTGTGT+TGG - chr1_3:35121297-35121316 Msa0116260:intron 30.0%
! CAATTGTTGATGAAAAGCAT+TGG + chr1_3:35121367-35121386 None:intergenic 30.0%
TACAAAATGTTGTCAAATGG+CGG + chr1_3:35121642-35121661 None:intergenic 30.0%
TTTGTACTAAATAGTGCATC+GGG - chr1_3:35121656-35121675 Msa0116260:intron 30.0%
! GTTTTACGGTGACTATTATA+TGG - chr1_3:35121704-35121723 Msa0116260:intron 30.0%
! ATATTTAACTTCCCATAGAC+TGG - chr1_3:35121842-35121861 Msa0116260:intron 30.0%
GACTTTAAATTCCAGTCTAT+GGG + chr1_3:35121856-35121875 None:intergenic 30.0%
! TTAAAGTCCCAATGTCTTTT+AGG - chr1_3:35121868-35121887 Msa0116260:intron 30.0%
ACAAAGTCCTAAAAGACATT+GGG + chr1_3:35121878-35121897 None:intergenic 30.0%
TACAAAGTCCTAAAAGACAT+TGG + chr1_3:35121879-35121898 None:intergenic 30.0%
! TCATGGTTTCATACTTTTGT+TGG - chr1_3:35121913-35121932 Msa0116260:intron 30.0%
AGCTAATAGCCTAATATGTA+TGG + chr1_3:35121974-35121993 None:intergenic 30.0%
TCTTCAACATACCTAGATAT+AGG - chr1_3:35122100-35122119 Msa0116260:intron 30.0%
ATGACATGTAACCTATATCT+AGG + chr1_3:35122114-35122133 None:intergenic 30.0%
! AAGATTTTTGAATTCTGCTG+TGG - chr1_3:35122168-35122187 Msa0116260:intron 30.0%
AATGTTACAATTTCCAACTC+TGG + chr1_3:35122298-35122317 None:intergenic 30.0%
AAAAATCTGATATTTGGCGA+TGG + chr1_3:35122437-35122456 None:intergenic 30.0%
CTTGGCAAAAATCTGATATT+TGG + chr1_3:35122443-35122462 None:intergenic 30.0%
TAATCTCAAGTGATGAAGAT+CGG - chr1_3:35122540-35122559 Msa0116260:intron 30.0%
!! AAGATACTTGGAAAAGCATT+TGG - chr1_3:35122626-35122645 Msa0116260:intron 30.0%
AAATTACATCCAAGAACTTC+TGG + chr1_3:35122788-35122807 None:intergenic 30.0%
AGCTAATATAAAGATCCTGA+AGG - chr1_3:35122823-35122842 Msa0116260:intron 30.0%
GTATTGAAGGAAAATCTCTT+AGG - chr1_3:35122855-35122874 Msa0116260:intron 30.0%
! CTTCGAAATCCAAAAGTTTT+GGG - chr1_3:35122887-35122906 Msa0116260:intron 30.0%
!! ATTCTGTCTTTTATTTACGG+TGG + chr1_3:35123052-35123071 None:intergenic 30.0%
AATTCATTCTCAAGTTAACG+CGG - chr1_3:35123111-35123130 Msa0116260:intron 30.0%
TCATGATAATATCAGAGACA+TGG + chr1_3:35123415-35123434 None:intergenic 30.0%
!!! CAAGAAACTCACTGTTTTTG+TGG + chr1_3:35119722-35119741 None:intergenic 35.0%
ATATCGACACATGTGATATG+CGG - chr1_3:35119965-35119984 Msa0116260:three_prime_UTR 35.0%
TATGTGTGTAGTGTAGGAAA+TGG - chr1_3:35120273-35120292 Msa0116260:CDS 35.0%
AAGATCATTCAGCCTTGAAT+TGG - chr1_3:35120544-35120563 Msa0116260:CDS 35.0%
! GCATATTCTAGAAGAATCGA+TGG + chr1_3:35120618-35120637 None:intergenic 35.0%
ATGACAAAGGAAGAGAAGAT+AGG + chr1_3:35120648-35120667 None:intergenic 35.0%
!! GGACAAAGTCGATTTTAAAG+AGG + chr1_3:35120697-35120716 None:intergenic 35.0%
! TAAAATCGACTTTGTCCTCA+AGG - chr1_3:35120700-35120719 Msa0116260:CDS 35.0%
TGAAGTTGGGATAATGATGT+AGG - chr1_3:35120724-35120743 Msa0116260:CDS 35.0%
GGGATAATGATGTAGGATAT+TGG - chr1_3:35120731-35120750 Msa0116260:CDS 35.0%
! TCATAGGAAGAGGTATGTAA+AGG - chr1_3:35120883-35120902 Msa0116260:intron 35.0%
TCTCTTAAACAGTTTCAGCT+GGG - chr1_3:35120918-35120937 Msa0116260:intron 35.0%
AGCTGGGATATGTAAAAAAC+TGG - chr1_3:35120934-35120953 Msa0116260:intron 35.0%
GCTGGGATATGTAAAAAACT+GGG - chr1_3:35120935-35120954 Msa0116260:intron 35.0%
TCCAATTATTGCCAAGATTG+GGG + chr1_3:35121004-35121023 None:intergenic 35.0%
! CAGAGATGCTTTATTGAATC+TGG + chr1_3:35121133-35121152 None:intergenic 35.0%
AGTAACGATATGCTAGTTGA+TGG - chr1_3:35121341-35121360 Msa0116260:intron 35.0%
TACTACATCCATAGCCAAAA+TGG + chr1_3:35121406-35121425 None:intergenic 35.0%
AATCCAATAAGCTGGTTGAA+TGG - chr1_3:35121451-35121470 Msa0116260:intron 35.0%
AGAATGCGTAGCAGATTAAT+TGG - chr1_3:35121511-35121530 Msa0116260:intron 35.0%
!! GGTTATCTTTCTTTGGAGTT+AGG - chr1_3:35121532-35121551 Msa0116260:intron 35.0%
TTGTACTAAATAGTGCATCG+GGG - chr1_3:35121657-35121676 Msa0116260:intron 35.0%
!! CTCCATTCTGATTCGTTTTA+CGG - chr1_3:35121690-35121709 Msa0116260:intron 35.0%
GTGACTATTATATGGAGAGT+GGG - chr1_3:35121712-35121731 Msa0116260:intron 35.0%
GGACTTTAAATTCCAGTCTA+TGG + chr1_3:35121857-35121876 None:intergenic 35.0%
!!! GAATACAGTTTTAGTTCTGG+AGG - chr1_3:35122011-35122030 Msa0116260:intron 35.0%
GTTCTTTGATGAATATCAGC+TGG + chr1_3:35122139-35122158 None:intergenic 35.0%
ACTTATGCATACAGATCCAA+AGG - chr1_3:35122272-35122291 Msa0116260:intron 35.0%
CGTACACAATATTTAGACTC+TGG + chr1_3:35122375-35122394 None:intergenic 35.0%
GATATTTGGCGATGGAATAA+TGG + chr1_3:35122429-35122448 None:intergenic 35.0%
!! ATGGTTGGTAGAATGATTTG+AGG + chr1_3:35122486-35122505 None:intergenic 35.0%
CAAATCATTCTACCAACCAT+TGG - chr1_3:35122486-35122505 Msa0116260:intron 35.0%
TAACTTCGACGATGAAGAAA+AGG - chr1_3:35122601-35122620 Msa0116260:intron 35.0%
GAAGAAAAGGACAAGATACT+TGG - chr1_3:35122614-35122633 Msa0116260:intron 35.0%
CCATTTACTGCCTCAAATTT+GGG + chr1_3:35122698-35122717 None:intergenic 35.0%
TCCATTTACTGCCTCAAATT+TGG + chr1_3:35122699-35122718 None:intergenic 35.0%
! CCAAAACTTTTGGATTTCGA+AGG + chr1_3:35122889-35122908 None:intergenic 35.0%
! CCTTCGAAATCCAAAAGTTT+TGG - chr1_3:35122886-35122905 Msa0116260:intron 35.0%
TGATTGTAAGGGAGATTGTA+AGG - chr1_3:35122919-35122938 Msa0116260:intron 35.0%
!! TCTTTTATTTACGGTGGAGA+GGG + chr1_3:35123046-35123065 None:intergenic 35.0%
! ATTGCATGGTTCTCACATTT+TGG - chr1_3:35123070-35123089 Msa0116260:intron 35.0%
TGATGAAGTTACTTGGACAA+TGG - chr1_3:35123179-35123198 Msa0116260:intron 35.0%
! TGACATCATCAATAGGTTGA+GGG + chr1_3:35123363-35123382 None:intergenic 35.0%
TTGACATCATCAATAGGTTG+AGG + chr1_3:35123364-35123383 None:intergenic 35.0%
!! ACCTATTGATGATGTCAAAC+AGG - chr1_3:35123366-35123385 Msa0116260:CDS 35.0%
TCCTGTTTGACATCATCAAT+AGG + chr1_3:35123370-35123389 None:intergenic 35.0%
TATGGTATCGTGCAAGTGAA+TGG - chr1_3:35119744-35119763 Msa0116260:three_prime_UTR 40.0%
TTGAAGCTAACTAACCAGAG+CGG + chr1_3:35119824-35119843 None:intergenic 40.0%
ACGAAACTACACGTTGATAC+CGG + chr1_3:35120026-35120045 None:intergenic 40.0%
!! TTTGGTAATGCAGGTATGGT+TGG - chr1_3:35120140-35120159 Msa0116260:three_prime_UTR 40.0%
!! TTGGTAATGCAGGTATGGTT+GGG - chr1_3:35120141-35120160 Msa0116260:three_prime_UTR 40.0%
!!! TATTTTCTAGTGGGTTGTGG+TGG - chr1_3:35120245-35120264 Msa0116260:CDS 40.0%
GCTTTGTATGTGTGTAGTGT+AGG - chr1_3:35120267-35120286 Msa0116260:CDS 40.0%
TATGAATATACGCAGAGGAG+AGG - chr1_3:35120408-35120427 Msa0116260:CDS 40.0%
TTCTCTTCCTTTGTCATAGC+TGG - chr1_3:35120651-35120670 Msa0116260:CDS 40.0%
TTTGTCCTCAAGGTTGAAGT+TGG - chr1_3:35120710-35120729 Msa0116260:CDS 40.0%
TTGTCCTCAAGGTTGAAGTT+GGG - chr1_3:35120711-35120730 Msa0116260:CDS 40.0%
TTATCCCAACTTCAACCTTG+AGG + chr1_3:35120718-35120737 None:intergenic 40.0%
ATATTGGCATAGTCCTCACA+GGG - chr1_3:35120747-35120766 Msa0116260:CDS 40.0%
TGTGATAGGACCTAATTCAC+TGG - chr1_3:35120857-35120876 Msa0116260:intron 40.0%
CCTATGACAACCAGTGAATT+AGG + chr1_3:35120870-35120889 None:intergenic 40.0%
! CCTAATTCACTGGTTGTCAT+AGG - chr1_3:35120867-35120886 Msa0116260:intron 40.0%
GTCTCTTAAACAGTTTCAGC+TGG - chr1_3:35120917-35120936 Msa0116260:intron 40.0%
AATTATTGCCAAGATTGGGG+TGG + chr1_3:35121001-35121020 None:intergenic 40.0%
ACCCCAATCTTGGCAATAAT+TGG - chr1_3:35121000-35121019 Msa0116260:intron 40.0%
!!! AGAAGTTGCCATTTTGGCTA+TGG - chr1_3:35121395-35121414 Msa0116260:intron 40.0%
TTGCTCACAATCCAATAAGC+TGG - chr1_3:35121443-35121462 Msa0116260:intron 40.0%
TGACCATTCAACCAGCTTAT+TGG + chr1_3:35121457-35121476 None:intergenic 40.0%
ATCTATGATTGACAACGCTG+AGG + chr1_3:35121559-35121578 None:intergenic 40.0%
CACCGTAAAACGAATCAGAA+TGG + chr1_3:35121695-35121714 None:intergenic 40.0%
GGTGACTATTATATGGAGAG+TGG - chr1_3:35121711-35121730 Msa0116260:intron 40.0%
! TTTTTACAGCTCCTTCTACG+AGG - chr1_3:35121755-35121774 Msa0116260:intron 40.0%
TGTTGAAAATGCCTCGTAGA+AGG + chr1_3:35121769-35121788 None:intergenic 40.0%
!!! ACAGTTTTAGTTCTGGAGGT+TGG - chr1_3:35122015-35122034 Msa0116260:intron 40.0%
!!! TCTGGAGGTTGGCTTTTATA+CGG - chr1_3:35122026-35122045 Msa0116260:intron 40.0%
AAATTCACTGGTAGGACTGT+AGG - chr1_3:35122333-35122352 Msa0116260:intron 40.0%
GGACTGTAGGAGGATAATAA+TGG - chr1_3:35122346-35122365 Msa0116260:intron 40.0%
AATATTGTGTACGATCGTGC+AGG - chr1_3:35122382-35122401 Msa0116260:intron 40.0%
! TGGCGATGGAATAATGGAAA+AGG + chr1_3:35122423-35122442 None:intergenic 40.0%
!! CACTTTGCTTTTGCAAGACT+TGG + chr1_3:35122461-35122480 None:intergenic 40.0%
CAAGTCTTGCAAAAGCAAAG+TGG - chr1_3:35122459-35122478 Msa0116260:intron 40.0%
AGAACGCAATATCCAATGGT+TGG + chr1_3:35122501-35122520 None:intergenic 40.0%
TCGTAGAACGCAATATCCAA+TGG + chr1_3:35122505-35122524 None:intergenic 40.0%
TGATGAAGATCGGAGTATGT+GGG - chr1_3:35122550-35122569 Msa0116260:intron 40.0%
CCTTGTTCATTCTCCTTACT+GGG - chr1_3:35122649-35122668 Msa0116260:intron 40.0%
CTTGTTCATTCTCCTTACTG+GGG - chr1_3:35122650-35122669 Msa0116260:intron 40.0%
GAAGGAAGTTCCCAAATTTG+AGG - chr1_3:35122685-35122704 Msa0116260:intron 40.0%
! CCCAAATTTGAGGCAGTAAA+TGG - chr1_3:35122695-35122714 Msa0116260:intron 40.0%
! CTTTTGGATTTCGAAGGAGA+AGG + chr1_3:35122883-35122902 None:intergenic 40.0%
! TGGGTTCGATTCTAGTTGAT+TGG - chr1_3:35122959-35122978 Msa0116260:CDS 40.0%
GAACAATGATGTTATGCTGC+AGG + chr1_3:35123014-35123033 None:intergenic 40.0%
!! GTCTTTTATTTACGGTGGAG+AGG + chr1_3:35123047-35123066 None:intergenic 40.0%
GAACGAAGATACTCACAGTA+AGG - chr1_3:35123201-35123220 Msa0116260:intron 40.0%
AATATCAGAGACATGGAAGC+TGG + chr1_3:35123408-35123427 None:intergenic 40.0%
! TGGTGAGAGCGTAGATGATA+TGG - chr1_3:35119764-35119783 Msa0116260:three_prime_UTR 45.0%
AGCACAGTTCTTGTGTTGCA+AGG - chr1_3:35120202-35120221 Msa0116260:exon 45.0%
AGCAACGGCTAACCAATTCA+AGG + chr1_3:35120559-35120578 None:intergenic 45.0%
! TTCTAGAAGAATCGATGGGG+AGG + chr1_3:35120613-35120632 None:intergenic 45.0%
GATATTGGCATAGTCCTCAC+AGG - chr1_3:35120746-35120765 Msa0116260:CDS 45.0%
GGAAACTAATGTTCCCTGTG+AGG + chr1_3:35120763-35120782 None:intergenic 45.0%
TTGTTCAGTGGGAACACTTG+GGG + chr1_3:35120785-35120804 None:intergenic 45.0%
CTTGTTCAGTGGGAACACTT+GGG + chr1_3:35120786-35120805 None:intergenic 45.0%
TCTTGTTCAGTGGGAACACT+TGG + chr1_3:35120787-35120806 None:intergenic 45.0%
ACAGCAAGCTCTTGTTCAGT+GGG + chr1_3:35120796-35120815 None:intergenic 45.0%
GCTGTCCTTGAATGATCTCA+CGG - chr1_3:35120811-35120830 Msa0116260:intron 45.0%
CTGTCCTTGAATGATCTCAC+GGG - chr1_3:35120812-35120831 Msa0116260:intron 45.0%
! TCACTGGTTGTCATAGGAAG+AGG - chr1_3:35120873-35120892 Msa0116260:intron 45.0%
GTATTCTACCACCCCAATCT+TGG - chr1_3:35120990-35121009 Msa0116260:intron 45.0%
!! GAGTGCAGAAGTTGCCATTT+TGG - chr1_3:35121389-35121408 Msa0116260:intron 45.0%
! CAATTTCCAACTCTGGCCTT+TGG + chr1_3:35122291-35122310 None:intergenic 45.0%
GTGATGAAGATCGGAGTATG+TGG - chr1_3:35122549-35122568 Msa0116260:intron 45.0%
! GCCTTGTTCATTCTCCTTAC+TGG - chr1_3:35122648-35122667 Msa0116260:intron 45.0%
CCCAGTAAGGAGAATGAACA+AGG + chr1_3:35122652-35122671 None:intergenic 45.0%
TAAAGATCCTGAAGGAGCAG+TGG - chr1_3:35122831-35122850 Msa0116260:intron 45.0%
!! AAGGAGCAGTGGAGTATTGA+AGG - chr1_3:35122842-35122861 Msa0116260:intron 45.0%
TTTATTTACGGTGGAGAGGG+CGG + chr1_3:35123043-35123062 None:intergenic 45.0%
CGACTTCGCAAGTATGCATA+TGG - chr1_3:35123135-35123154 Msa0116260:intron 45.0%
GCAGAATCAGTAGCGAGAAG+AGG + chr1_3:35120182-35120201 None:intergenic 50.0%
ATATACGCAGAGGAGAGGAG+AGG - chr1_3:35120413-35120432 Msa0116260:CDS 50.0%
GAAGCTGCCAGCTATGACAA+AGG + chr1_3:35120661-35120680 None:intergenic 50.0%
TGTTCAGTGGGAACACTTGG+GGG + chr1_3:35120784-35120803 None:intergenic 50.0%
GACAGCAAGCTCTTGTTCAG+TGG + chr1_3:35120797-35120816 None:intergenic 50.0%
CAGACCCGTGAGATCATTCA+AGG + chr1_3:35120819-35120838 None:intergenic 50.0%
CGGGTCTGTAAAACTGCTAC+TGG - chr1_3:35120831-35120850 Msa0116260:intron 50.0%
! ACTGCTACTGGCTGTGTGAT+AGG - chr1_3:35120843-35120862 Msa0116260:intron 50.0%
! CAAGCTCTAGCATCTTGCAG+AGG + chr1_3:35120971-35120990 None:intergenic 50.0%
!! ACTGCAGGTTGGTGGTGATA+AGG + chr1_3:35121052-35121071 None:intergenic 50.0%
AAGACAGGATGTGCAACTGC+AGG + chr1_3:35121067-35121086 None:intergenic 50.0%
!! TTCTGTGTTGGCTCGCTAAG+TGG - chr1_3:35121309-35121328 Msa0116260:intron 50.0%
! TTGGCTCGCTAAGTGGAAAC+TGG - chr1_3:35121316-35121335 Msa0116260:intron 50.0%
GGTCAGCGTTGTAGTGTTCA+TGG - chr1_3:35121472-35121491 Msa0116260:intron 50.0%
ACAGATCCAAAGGCCAGAGT+TGG - chr1_3:35122282-35122301 Msa0116260:intron 50.0%
TTCACTGGTAGGACTGTAGG+AGG - chr1_3:35122336-35122355 Msa0116260:intron 50.0%
TCACGATCTTCTCCCCAGTA+AGG + chr1_3:35122665-35122684 None:intergenic 50.0%
CAATACTCCACTGCTCCTTC+AGG + chr1_3:35122841-35122860 None:intergenic 50.0%
AGGCACAATGCACTAGATGC+TGG - chr1_3:35122939-35122958 Msa0116260:intron 50.0%
GGCACAATGCACTAGATGCT+GGG - chr1_3:35122940-35122959 Msa0116260:intron 50.0%
CTGGGTTCCAGCTTTCAAAG+TGG - chr1_3:35123461-35123480 Msa0116260:five_prime_UTR 50.0%
AACTAACCAGAGCGGCGAGA+AGG + chr1_3:35119816-35119835 None:intergenic 55.0%
CGTGTAGTTTCGTGCTGTGC+TGG - chr1_3:35120033-35120052 Msa0116260:three_prime_UTR 55.0%
! AGTTTCGTGCTGTGCTGGTG+TGG - chr1_3:35120038-35120057 Msa0116260:three_prime_UTR 55.0%
TGCTGGTGTGGTGTCTGTGT+TGG - chr1_3:35120050-35120069 Msa0116260:three_prime_UTR 55.0%
TGGTGTGGTGTCTGTGTTGG+TGG - chr1_3:35120053-35120072 Msa0116260:three_prime_UTR 55.0%
AGAATCCAGGAAGCAGGGAG+AGG + chr1_3:35120587-35120606 None:intergenic 55.0%
CTCCCTGCTTCCTGGATTCT+CGG - chr1_3:35120587-35120606 Msa0116260:CDS 55.0%
! GATGTGCAACTGCAGGTTGG+TGG + chr1_3:35121060-35121079 None:intergenic 55.0%
CAGGATGTGCAACTGCAGGT+TGG + chr1_3:35121063-35121082 None:intergenic 55.0%
TTTGAGCCCTCGTGACCTGT+TGG - chr1_3:35121085-35121104 Msa0116260:intron 55.0%
TTGAGCCCTCGTGACCTGTT+GGG - chr1_3:35121086-35121105 Msa0116260:intron 55.0%
TAACTTGACCCGCACCCAAC+AGG + chr1_3:35121103-35121122 None:intergenic 55.0%
ATCGTGCAGGCTGATCTTGC+TGG - chr1_3:35122395-35122414 Msa0116260:intron 55.0%
CTGGGGAGAAGATCGTGAGA+AGG - chr1_3:35122667-35122686 Msa0116260:intron 55.0%
! CAGGGAGAGGAGTGCAGCAA+CGG + chr1_3:35120574-35120593 None:intergenic 60.0%
GGCCGAGAATCCAGGAAGCA+GGG + chr1_3:35120592-35120611 None:intergenic 60.0%
AGGCCGAGAATCCAGGAAGC+AGG + chr1_3:35120593-35120612 None:intergenic 60.0%
GGTCACGAGGGCTCAAAGAC+AGG + chr1_3:35121082-35121101 None:intergenic 60.0%
CCAGAGCGGCGAGAAGGTGA+AGG + chr1_3:35119810-35119829 None:intergenic 65.0%
CCTTCACCTTCTCGCCGCTC+TGG - chr1_3:35119807-35119826 Msa0116260:three_prime_UTR 65.0%
CGCAGAGGAGAGGAGAGGAG+AGG - chr1_3:35120418-35120437 Msa0116260:CDS 65.0%
GCACTCCTCTCCCTGCTTCC+TGG - chr1_3:35120579-35120598 Msa0116260:CDS 65.0%
GATGGGGAGGCCGAGAATCC+AGG + chr1_3:35120600-35120619 None:intergenic 65.0%
CCGCACCCAACAGGTCACGA+GGG + chr1_3:35121094-35121113 None:intergenic 65.0%
CCCTCGTGACCTGTTGGGTG+CGG - chr1_3:35121091-35121110 Msa0116260:intron 65.0%
CCTCGTGACCTGTTGGGTGC+GGG - chr1_3:35121092-35121111 Msa0116260:intron 65.0%
CCCGCACCCAACAGGTCACG+AGG + chr1_3:35121095-35121114 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 35119693 35123488 35119693 ID=Msa0116260;Name=Msa0116260
chr1_3 mRNA 35119693 35123488 35119693 ID=Msa0116260-mRNA-1;Parent=Msa0116260;Name=Msa0116260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=85|0.5|0.66|1|1|1|3|515|224
chr1_3 exon 35119693 35120777 35119693 ID=Msa0116260-mRNA-1:exon:11249;Parent=Msa0116260-mRNA-1
chr1_3 exon 35122958 35123011 35122958 ID=Msa0116260-mRNA-1:exon:11248;Parent=Msa0116260-mRNA-1
chr1_3 exon 35123353 35123488 35123353 ID=Msa0116260-mRNA-1:exon:11247;Parent=Msa0116260-mRNA-1
chr1_3 five_prime_UTR 35123404 35123488 35123404 ID=Msa0116260-mRNA-1:five_prime_utr;Parent=Msa0116260-mRNA-1
chr1_3 CDS 35123353 35123403 35123353 ID=Msa0116260-mRNA-1:cds;Parent=Msa0116260-mRNA-1
chr1_3 CDS 35122958 35123011 35122958 ID=Msa0116260-mRNA-1:cds;Parent=Msa0116260-mRNA-1
chr1_3 CDS 35120208 35120777 35120208 ID=Msa0116260-mRNA-1:cds;Parent=Msa0116260-mRNA-1
chr1_3 three_prime_UTR 35119693 35120207 35119693 ID=Msa0116260-mRNA-1:three_prime_utr;Parent=Msa0116260-mRNA-1
Gene Sequence

>Msa0116260

ATGATATGGAGTGTCTCAACTTCGCATCGCCTTCACCTTCTCGCCGCTCTGTTGAATTCTCCTCTTCTCGCTACTGATTCTGCAGCACAGTTCTTGTGTTGCAAGGCTGATCTTGCTGGTGCCTTTTCCATTATTCCATCGCCAAATATCAGATTTTTGCCAAGTCTTGCAAAAGCAAAGTGGACCTCAAATCATTCTACCAACCATTGGATATTGCGTTCTACGACACAGATAGAGAATGTAATCTCAAGTGATGAAGATCGGAGTATGTGGGAAGCATGTAGACAAGCTCTTTCTGCATTTAACTTCGACGATGAAGAAAAGGACAAGATACTTGGAAAAGCATTTGGCCTTGTTCATTCTCCTTACTGGGGAGAAGATCGTGAGAAGGAAGTTCCCAAATTTGAGGCAGTAAATGGAACATTAGATTATCTAAGGAGTTTAAATCTTTCTGACGATGATTTGTCCAAGTTGCTTAAAAAATTTCCAGAAGTTCTTGGATGTAATTTAGAAGAAGAGTTGAAAGCTAATATAAAGATCCTGAAGGAGCAGTGGAGTATTGAAGGAAAATCTCTTAGGAACCTTCTCCTTCGAAATCCAAAAGTTTTGGGTTTTAATATTGATTGTAAGGGAGATTGTAAGGCACAATGCACTAGATGCTGGGTTCGATTCTAG

Protein sequence

>Msa0116260

MIWSVSTSHRLHLLAALLNSPLLATDSAAQFLCCKADLAGAFSIIPSPNIRFLPSLAKAKWTSNHSTNHWILRSTTQIENVISSDEDRSMWEACRQALSAFNFDDEEKDKILGKAFGLVHSPYWGEDREKEVPKFEAVNGTLDYLRSLNLSDDDLSKLLKKFPEVLGCNLEEELKANIKILKEQWSIEGKSLRNLLLRNPKVLGFNIDCKGDCKAQCTRCWVRF*