AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0208390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0208390 MtrunA17_Chr2g0307121 97.688 346 8 0 1 346 1 346 0.0 690
Msa0208390 MtrunA17_Chr8g0337361 48.266 346 173 2 2 346 62 402 1.80e-112 332
Msa0208390 MtrunA17_Chr7g0214831 45.821 347 181 3 2 346 5 346 2.44e-112 330
Msa0208390 MtrunA17_Chr8g0337471 45.954 346 182 2 2 346 3 344 7.69e-111 326
Msa0208390 MtrunA17_Chr8g0337451 45.665 346 183 2 2 346 3 344 1.59e-109 323
Msa0208390 MtrunA17_Chr8g0337491 45.014 351 183 3 2 343 3 352 6.06e-106 317
Msa0208390 MtrunA17_Chr8g0337371 46.686 347 176 4 2 346 498 837 3.20e-102 319
Msa0208390 MtrunA17_Chr8g0337371 46.921 341 172 4 2 340 51 384 6.53e-101 315
Msa0208390 MtrunA17_Chr4g0043061 42.319 345 196 1 2 346 9 350 6.51e-101 301
Msa0208390 MtrunA17_Chr8g0337481 47.794 272 142 0 75 346 14 285 9.05e-94 281
Msa0208390 MtrunA17_Chr8g0335881 49.774 221 105 2 2 221 3 218 3.43e-69 216
Msa0208390 MtrunA17_Chr2g0322531 35.072 345 214 7 3 341 5 345 5.72e-68 217
Msa0208390 MtrunA17_Chr2g0322551 35.569 343 212 5 4 341 8 346 1.64e-67 216
Msa0208390 MtrunA17_Chr2g0322541 34.104 346 220 5 1 341 4 346 1.17e-61 202
Msa0208390 MtrunA17_Chr5g0445921 41.732 127 74 0 217 343 9 135 1.57e-31 115
Msa0208390 MtrunA17_Chr4g0045061 34.123 211 131 6 140 344 415 623 3.13e-24 103
Msa0208390 MtrunA17_Chr4g0045041 33.649 211 132 6 140 344 415 623 3.10e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0208390 AT5G16970.1 46.398 347 183 2 1 346 1 345 4.69e-116 340
Msa0208390 AT5G16990.1 46.377 345 181 2 3 346 2 343 3.04e-114 335
Msa0208390 AT5G17000.1 46.974 347 181 2 1 346 1 345 4.41e-114 335
Msa0208390 AT1G26320.1 47.826 345 177 2 3 346 9 351 1.12e-111 329
Msa0208390 AT3G03080.1 46.221 344 183 1 3 346 9 350 6.88e-111 327
Msa0208390 AT1G65560.1 45.429 350 179 5 3 346 7 350 5.94e-108 320
Msa0208390 AT3G59845.1 45.748 341 181 2 3 341 5 343 2.44e-107 318
Msa0208390 AT1G26320.2 46.667 345 176 3 3 346 9 346 3.94e-107 317
Msa0208390 AT5G16960.2 45.882 340 181 2 5 343 6 343 1.93e-106 315
Msa0208390 AT5G16960.1 45.882 340 181 2 5 343 6 343 1.93e-106 315
Msa0208390 AT5G38000.1 45.723 339 182 2 4 341 11 348 5.63e-105 312
Msa0208390 AT5G37940.1 44.186 344 190 2 4 346 11 353 1.67e-103 308
Msa0208390 AT5G37980.1 44.186 344 190 2 4 346 11 353 1.71e-103 308
Msa0208390 AT5G38000.3 44.675 338 182 3 4 337 11 347 2.69e-100 300
Msa0208390 AT5G38000.2 42.183 339 175 3 4 341 11 329 6.34e-90 273
Msa0208390 AT1G65560.2 48.175 274 136 3 78 346 2 274 7.99e-90 271
Msa0208390 AT3G59845.2 51.037 241 118 0 101 341 1 241 1.34e-86 261
Msa0208390 AT5G16980.1 52.000 225 108 0 122 346 15 239 2.22e-83 253
Msa0208390 AT5G16980.3 52.000 225 108 0 122 346 15 239 2.22e-83 253
Msa0208390 AT5G16980.2 52.000 225 108 0 122 346 81 305 8.46e-83 254
Msa0208390 AT5G17000.2 47.982 223 113 2 1 222 1 221 3.43e-71 222
Msa0208390 AT1G49670.1 31.754 211 136 6 140 344 411 619 5.23e-22 97.4
Msa0208390 AT1G49670.2 32.143 196 125 6 155 344 449 642 4.19e-21 95.1

Find 77 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTATGTTGTTGGCTGTGC+TGG 0.188280 2_1:-43057213 Msa0208390:CDS
GCTATTGATGCTCTAGTTAT+TGG 0.197686 2_1:-43057707 Msa0208390:CDS
CACTTCCATTTCACTTTGAT+TGG 0.213484 2_1:+43059190 None:intergenic
TATACAACATCCATCATATT+TGG 0.217301 2_1:+43056523 None:intergenic
CTTCAAAATGTGACTCCTTT+GGG 0.232194 2_1:+43059126 None:intergenic
ATTGGAAGAGTTGTGACTTC+TGG 0.238593 2_1:-43057689 Msa0208390:CDS
ACTTATCATCTTGGAATTCT+TGG 0.247958 2_1:-43057551 Msa0208390:intron
ATCTAAACTCCACTCTTAAA+AGG 0.259045 2_1:-43057029 Msa0208390:intron
AGTACCTGGCCTGGAGTTAA+TGG 0.270568 2_1:+43058960 None:intergenic
TGCCTCAGGAACTTAATCTT+TGG 0.284422 2_1:-43056255 Msa0208390:three_prime_UTR
TGAGAAAGATGATTTGGTTA+TGG 0.293811 2_1:-43057654 Msa0208390:CDS
GAGAAAGATGATTTGGTTAT+GGG 0.296791 2_1:-43057653 Msa0208390:CDS
TTGATTGGTTGCTAACTCTT+TGG 0.299019 2_1:+43059205 None:intergenic
TTGGAAATGTCGCTTCTTGC+AGG 0.312220 2_1:-43059345 Msa0208390:five_prime_UTR
TTTAGTGGACTGTCAGCTTA+TGG 0.321184 2_1:-43057342 Msa0208390:CDS
TGAAATTTGCAAACCACAAA+AGG 0.339905 2_1:-43057310 Msa0208390:CDS
ACTTCAAAATGTGACTCCTT+TGG 0.341261 2_1:+43059125 None:intergenic
TAAGTTTGAGAAAGATGATT+TGG 0.344609 2_1:-43057660 Msa0208390:CDS
CTTTATCACTATGTATTTGT+TGG 0.353004 2_1:+43059166 None:intergenic
AGCATCCCTTCTGCATTTGT+TGG 0.353234 2_1:-43056367 Msa0208390:CDS
ACAGATAGGACTATGAAAAT+TGG 0.358288 2_1:+43059307 None:intergenic
TTTCCACTCACTTATCATCT+TGG 0.363774 2_1:-43057560 Msa0208390:CDS
TTGGAAGAGTTGTGACTTCT+GGG 0.364560 2_1:-43057688 Msa0208390:CDS
GCATTTGTTGGACTCTTCAA+TGG 0.366825 2_1:-43056355 Msa0208390:CDS
AAATCATAGTTTAGTCAAAC+AGG 0.374159 2_1:+43056190 None:intergenic
GTATTTGTTTCAGCAGCATC+TGG 0.388705 2_1:-43057279 Msa0208390:CDS
TCTTCGCAATGGTCAGTTGC+AGG 0.394420 2_1:-43056419 Msa0208390:CDS
GTTGCTAACATGAAAGCATT+TGG 0.399078 2_1:-43056604 Msa0208390:CDS
GGTTTCTTCCTTGTAGTTGA+AGG 0.426312 2_1:+43057053 None:intergenic
AGCAACCAATCAAAGTGAAA+TGG 0.440276 2_1:-43059195 Msa0208390:exon
GGCTGAGTACAGTGTAGTTA+AGG 0.443379 2_1:-43057618 Msa0208390:CDS
GCTATGTTGTTGGCTGTGCT+GGG 0.443602 2_1:-43057212 Msa0208390:CDS
TTCATGCGGTTAATAAGATA+AGG 0.447040 2_1:+43059023 None:intergenic
GGATCAGTTGGAAATATTGT+AGG 0.464203 2_1:-43057258 Msa0208390:CDS
ACTAAAGAAAGTTAACAGAT+AGG 0.481564 2_1:+43059293 None:intergenic
TTTGGTAGAGTGTCTGTTTG+TGG 0.484471 2_1:-43056586 Msa0208390:CDS
GTGATTGAAGACAGGTCGTT+GGG 0.490083 2_1:-43056397 Msa0208390:CDS
TAATGGAGTTGCAAAGCTAA+TGG 0.491094 2_1:+43058977 None:intergenic
TTTAGTCTTTCGTTGAAGCC+AGG 0.494169 2_1:-43059089 Msa0208390:CDS
CAAACCACAAAAGGGTGAAA+AGG 0.495171 2_1:-43057301 Msa0208390:CDS
ATTTCTGAGTATACTGATGT+TGG 0.495880 2_1:-43056559 Msa0208390:CDS
AAAATATATGTCAATTCCAT+CGG 0.496992 2_1:+43056660 None:intergenic
TGGTTATGGGAGTATTCACT+TGG 0.497920 2_1:-43057640 Msa0208390:CDS
GAAATTTGCAAACCACAAAA+GGG 0.506126 2_1:-43057309 Msa0208390:CDS
AAATATATGTCAATTCCATC+GGG 0.511624 2_1:+43056661 None:intergenic
TTTGCAACTCCATTAACTCC+AGG 0.512264 2_1:-43058969 Msa0208390:CDS
GAGAGCTTCACCAAATATGA+TGG 0.514085 2_1:-43056533 Msa0208390:CDS
TCAGCAGCATCTGGATCAGT+TGG 0.518867 2_1:-43057270 Msa0208390:CDS
CAAATGATGAGTACCTGGCC+TGG 0.527096 2_1:+43058951 None:intergenic
GAAGATGAGTGATCATGTAA+TGG 0.527399 2_1:-43056301 Msa0208390:exon
TGATGATGCCTTCAACTACA+AGG 0.530215 2_1:-43057061 Msa0208390:CDS
TTTAAGAGTGGAGTTTAGAT+CGG 0.530559 2_1:+43057032 None:intergenic
ATCTAGAATCCGTCACGCTA+TGG 0.531981 2_1:+43056150 None:intergenic
TTCAAAATGTGACTCCTTTG+GGG 0.537629 2_1:+43059127 None:intergenic
ATTATCACTTCATCAGAACC+TGG 0.540233 2_1:+43059071 None:intergenic
TTTCCAATAGCAGACAAAAG+TGG 0.548365 2_1:+43059361 None:intergenic
AACTCCATTAACTCCAGGCC+AGG 0.553286 2_1:-43058964 Msa0208390:intron
TATTTCAGGTACTTTCCCGA+TGG 0.559890 2_1:-43056676 Msa0208390:intron
ATAAGTGAGTGGAAATTCAA+AGG 0.566962 2_1:+43057568 None:intergenic
TAAAATGCTACTATTGCCTC+AGG 0.567075 2_1:-43056269 Msa0208390:three_prime_UTR
AAGAGTCCAACAAATGCAGA+AGG 0.573531 2_1:+43056361 None:intergenic
TGAGTGATCATGTAATGGAT+AGG 0.573759 2_1:-43056296 Msa0208390:exon
TTCCAAAGATTAAGTTCCTG+AGG 0.577597 2_1:+43056253 None:intergenic
AGTTGCAGGTGATTGAAGAC+AGG 0.582175 2_1:-43056405 Msa0208390:CDS
ACATTACTCAAAGAAGAGCT+AGG 0.588928 2_1:-43057087 Msa0208390:CDS
CTCTTCAATGGAGATAACGT+TGG 0.603986 2_1:-43056343 Msa0208390:CDS
TACAAGAGAATCACTATCAG+AGG 0.605599 2_1:-43056502 Msa0208390:CDS
GTGATCATGTAATGGATAGG+AGG 0.606334 2_1:-43056293 Msa0208390:exon
GGTTATGGGAGTATTCACTT+GGG 0.610812 2_1:-43057639 Msa0208390:CDS
GGTGATTGAAGACAGGTCGT+TGG 0.611028 2_1:-43056398 Msa0208390:CDS
ACATTGGATTATCTTCGCAA+TGG 0.613205 2_1:-43056430 Msa0208390:CDS
AGTGGACTGTCAGCTTATGG+AGG 0.616255 2_1:-43057339 Msa0208390:CDS
ATTCCAAGATGATAAGTGAG+TGG 0.641007 2_1:+43057557 None:intergenic
AGAGTCCAACAAATGCAGAA+GGG 0.673061 2_1:+43056362 None:intergenic
TTGAACAAACCATAGCGTGA+CGG 0.687254 2_1:-43056159 Msa0208390:three_prime_UTR
TCGCATTGAAGATTCCCCAA+AGG 0.693369 2_1:-43059141 Msa0208390:CDS
ATAGGACTATGAAAATTGGA+CGG 0.704111 2_1:+43059311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTATTTGTTAATAAT+TGG - chr2_1:43056635-43056654 Msa0208390:CDS 10.0%
!!! ATTTAAGTTAGAATTAAAAA+AGG + chr2_1:43056922-43056941 None:intergenic 10.0%
!!! TATAAAAAGATACATTTTTT+GGG + chr2_1:43057005-43057024 None:intergenic 10.0%
!!! ATATAAAAAGATACATTTTT+TGG + chr2_1:43057006-43057025 None:intergenic 10.0%
!! AAAAATAATAATAATTGAGT+TGG - chr2_1:43057358-43057377 Msa0208390:intron 10.0%
!! AAAATAATAATAATTGAGTT+GGG - chr2_1:43057359-43057378 Msa0208390:intron 10.0%
!! TTGAATAAAAATACAAAAAA+AGG + chr2_1:43057557-43057576 None:intergenic 10.0%
!! ATTTACAAAAATCATTAATT+AGG + chr2_1:43057647-43057666 None:intergenic 10.0%
!!! ACAATTTTATATATATTCTA+TGG - chr2_1:43057675-43057694 Msa0208390:CDS 10.0%
!!! ATTTTAAGTTTTCTGAAAAT+TGG + chr2_1:43056278-43056297 None:intergenic 15.0%
!! AAACAAATAAAAATGAAAAC+AGG + chr2_1:43056740-43056759 None:intergenic 15.0%
!!! AAATAATAATAATTGAGTTG+GGG - chr2_1:43057360-43057379 Msa0208390:intron 15.0%
!!! ATATATATTCTATGGATTTT+TGG - chr2_1:43057683-43057702 Msa0208390:CDS 15.0%
!! CTAAGATAAAAATAAATTCA+TGG + chr2_1:43058415-43058434 None:intergenic 15.0%
!!! CATGAATTTATTTTTATCTT+AGG - chr2_1:43058413-43058432 Msa0208390:intron 15.0%
!!! TAATTTGTTTTGAATATTTC+AGG - chr2_1:43058835-43058854 Msa0208390:intron 15.0%
!! ATAAAACAAATCAAACACTA+TGG - chr2_1:43057089-43057108 Msa0208390:CDS 20.0%
!! TAATGTAAAAAAGAACATGA+CGG + chr2_1:43057160-43057179 None:intergenic 20.0%
!!! TTTTTCTAACTCATAATCTT+GGG + chr2_1:43057239-43057258 None:intergenic 20.0%
!! ACAAAAATCATTAATTAGGA+TGG + chr2_1:43057643-43057662 None:intergenic 20.0%
!! TCCTATTTATAGAAGAATAT+TGG - chr2_1:43058549-43058568 Msa0208390:intron 20.0%
!! CCTATTTATAGAAGAATATT+GGG - chr2_1:43058550-43058569 Msa0208390:intron 20.0%
!! TTCAAAACAAATTACATCAA+AGG + chr2_1:43058829-43058848 None:intergenic 20.0%
!! AAAATATATGTCAATTCCAT+CGG + chr2_1:43058868-43058887 None:intergenic 20.0%
! ACTAAAGAAAGTTAACAGAT+AGG + chr2_1:43056235-43056254 None:intergenic 25.0%
! CTTTATCACTATGTATTTGT+TGG + chr2_1:43056362-43056381 None:intergenic 25.0%
! GTACTCAAAATTCTTGATAT+AGG - chr2_1:43056601-43056620 Msa0208390:CDS 25.0%
! TGCTTTAATTATTTACCATC+CGG - chr2_1:43056773-43056792 Msa0208390:intron 25.0%
!! GTTTTTCTAACTCATAATCT+TGG + chr2_1:43057240-43057259 None:intergenic 25.0%
! AAAAATACAAAAAAAGGCAG+CGG + chr2_1:43057551-43057570 None:intergenic 25.0%
! TAAGTTTGAGAAAGATGATT+TGG - chr2_1:43057865-43057884 Msa0208390:intron 25.0%
!! TTATAAGATATCCTTTTTGC+AGG - chr2_1:43058159-43058178 Msa0208390:intron 25.0%
!!! TAATAAAGCTCACCTTTTTT+TGG + chr2_1:43058341-43058360 None:intergenic 25.0%
!!! AAAAAAAGGTGAGCTTTATT+AGG - chr2_1:43058340-43058359 Msa0208390:intron 25.0%
! CCCAATATTCTTCTATAAAT+AGG + chr2_1:43058553-43058572 None:intergenic 25.0%
! TCAACAAAAGTTTATGTATC+TGG + chr2_1:43058612-43058631 None:intergenic 25.0%
! CCTAATTATAAGAGAAAGTT+GGG + chr2_1:43058635-43058654 None:intergenic 25.0%
! TCCTAATTATAAGAGAAAGT+TGG + chr2_1:43058636-43058655 None:intergenic 25.0%
! AAATATATGTCAATTCCATC+GGG + chr2_1:43058867-43058886 None:intergenic 25.0%
!!! GACATATATTTTGACAATGT+CGG - chr2_1:43058876-43058895 Msa0208390:intron 25.0%
!!! ACATATATTTTGACAATGTC+GGG - chr2_1:43058877-43058896 Msa0208390:intron 25.0%
! TATACAACATCCATCATATT+TGG + chr2_1:43059005-43059024 None:intergenic 25.0%
!! GCTGATTATATGAATGTTTT+TGG - chr2_1:43059056-43059075 Msa0208390:CDS 25.0%
!! AGATTTTTCTGCTAAAACAT+TGG - chr2_1:43059079-43059098 Msa0208390:CDS 25.0%
! AAATCATAGTTTAGTCAAAC+AGG + chr2_1:43059338-43059357 None:intergenic 25.0%
ATAGGACTATGAAAATTGGA+CGG + chr2_1:43056217-43056236 None:intergenic 30.0%
ACAGATAGGACTATGAAAAT+TGG + chr2_1:43056221-43056240 None:intergenic 30.0%
!!! ACATTTTGAAGTCAAAACTG+AGG - chr2_1:43056411-43056430 Msa0208390:CDS 30.0%
TTCATGCGGTTAATAAGATA+AGG + chr2_1:43056505-43056524 None:intergenic 30.0%
TTGATATTACTGATGTGATG+TGG - chr2_1:43056827-43056846 Msa0208390:intron 30.0%
!!! GTCTCAGGTTTCATTTTTTT+CGG - chr2_1:43057469-43057488 Msa0208390:intron 30.0%
AAATATTGCACCCTAGAAAA+GGG + chr2_1:43057605-43057624 None:intergenic 30.0%
TAAATATTGCACCCTAGAAA+AGG + chr2_1:43057606-43057625 None:intergenic 30.0%
AAACCATACTAGATAACCAA+TGG + chr2_1:43057737-43057756 None:intergenic 30.0%
!! TTCTTCTTGTTGTCCTATTT+TGG - chr2_1:43057784-43057803 Msa0208390:intron 30.0%
!! TGAGAAAGATGATTTGGTTA+TGG - chr2_1:43057871-43057890 Msa0208390:intron 30.0%
!! GAGAAAGATGATTTGGTTAT+GGG - chr2_1:43057872-43057891 Msa0208390:intron 30.0%
ATAAGTGAGTGGAAATTCAA+AGG + chr2_1:43057960-43057979 None:intergenic 30.0%
ACTTATCATCTTGGAATTCT+TGG - chr2_1:43057974-43057993 Msa0208390:intron 30.0%
GAAGAAAAATGTCTAGTGAA+TGG - chr2_1:43058063-43058082 Msa0208390:intron 30.0%
TGAAATTTGCAAACCACAAA+AGG - chr2_1:43058215-43058234 Msa0208390:intron 30.0%
GAAATTTGCAAACCACAAAA+GGG - chr2_1:43058216-43058235 Msa0208390:intron 30.0%
! GGACAATATGCAAAACTTTT+AGG - chr2_1:43058288-43058307 Msa0208390:intron 30.0%
TTTAAGAGTGGAGTTTAGAT+CGG + chr2_1:43058496-43058515 None:intergenic 30.0%
ATCTAAACTCCACTCTTAAA+AGG - chr2_1:43058496-43058515 Msa0208390:intron 30.0%
CCCAACTTTCTCTTATAATT+AGG - chr2_1:43058632-43058651 Msa0208390:intron 30.0%
!!! CATATATTTTGACAATGTCG+GGG - chr2_1:43058878-43058897 Msa0208390:intron 30.0%
!!! ATATATTTTGACAATGTCGG+GGG - chr2_1:43058879-43058898 Msa0208390:intron 30.0%
ATTTCTGAGTATACTGATGT+TGG - chr2_1:43058966-43058985 Msa0208390:CDS 30.0%
!! ATTCCACTTTTGTCTGCTAT+TGG - chr2_1:43056161-43056180 Msa0208390:three_prime_UTR 35.0%
TTTCCAATAGCAGACAAAAG+TGG + chr2_1:43056167-43056186 None:intergenic 35.0%
! TTGATTGGTTGCTAACTCTT+TGG + chr2_1:43056323-43056342 None:intergenic 35.0%
AGCAACCAATCAAAGTGAAA+TGG - chr2_1:43056330-43056349 Msa0208390:CDS 35.0%
CACTTCCATTTCACTTTGAT+TGG + chr2_1:43056338-43056357 None:intergenic 35.0%
TTCAAAATGTGACTCCTTTG+GGG + chr2_1:43056401-43056420 None:intergenic 35.0%
CTTCAAAATGTGACTCCTTT+GGG + chr2_1:43056402-43056421 None:intergenic 35.0%
ACTTCAAAATGTGACTCCTT+TGG + chr2_1:43056403-43056422 None:intergenic 35.0%
ATTATCACTTCATCAGAACC+TGG + chr2_1:43056457-43056476 None:intergenic 35.0%
TAATGGAGTTGCAAAGCTAA+TGG + chr2_1:43056551-43056570 None:intergenic 35.0%
AATCAAACACTATGGTCTAG+TGG - chr2_1:43057097-43057116 Msa0208390:intron 35.0%
!! AATAATAATTGAGTTGGGGC+TGG - chr2_1:43057364-43057383 Msa0208390:intron 35.0%
! TTGAAGAGAAGCATACTTCA+AGG + chr2_1:43057448-43057467 None:intergenic 35.0%
TTGAAGTATGCTTCTCTTCA+AGG - chr2_1:43057447-43057466 Msa0208390:intron 35.0%
!!! TTTTTTTCGGTGATTGAAGC+TGG - chr2_1:43057482-43057501 Msa0208390:intron 35.0%
! AAGACTTGAACCCTTTTCTA+GGG - chr2_1:43057592-43057611 Msa0208390:CDS 35.0%
! GGATCTTGAGTGATTTTGTT+GGG + chr2_1:43057713-43057732 None:intergenic 35.0%
GCTATTGATGCTCTAGTTAT+TGG - chr2_1:43057818-43057837 Msa0208390:intron 35.0%
TTTCCACTCACTTATCATCT+TGG - chr2_1:43057965-43057984 Msa0208390:intron 35.0%
ATTCCAAGATGATAAGTGAG+TGG + chr2_1:43057971-43057990 None:intergenic 35.0%
TTCTTCAACTTTATGACAGC+AGG + chr2_1:43058049-43058068 None:intergenic 35.0%
! ATCCTTTTTGCAGGATTTAG+TGG - chr2_1:43058168-43058187 Msa0208390:intron 35.0%
! AATACCTTTTCACCCTTTTG+TGG + chr2_1:43058231-43058250 None:intergenic 35.0%
GGATCAGTTGGAAATATTGT+AGG - chr2_1:43058267-43058286 Msa0208390:intron 35.0%
!!! CTTTTAGGTTGCTATGTTGT+TGG - chr2_1:43058303-43058322 Msa0208390:intron 35.0%
GCCAAAATCTTTGTACTCAA+GGG + chr2_1:43058372-43058391 None:intergenic 35.0%
AGCCAAAATCTTTGTACTCA+AGG + chr2_1:43058373-43058392 None:intergenic 35.0%
ACATTACTCAAAGAAGAGCT+AGG - chr2_1:43058438-43058457 Msa0208390:intron 35.0%
!! GCTAACAAACCTTTTAAGAG+TGG + chr2_1:43058508-43058527 None:intergenic 35.0%
CTTCTATAAATAGGACCAGA+GGG + chr2_1:43058544-43058563 None:intergenic 35.0%
TCTTCTATAAATAGGACCAG+AGG + chr2_1:43058545-43058564 None:intergenic 35.0%
!! TCTGGACTGATTTTTGAACT+AGG + chr2_1:43058594-43058613 None:intergenic 35.0%
CTCTTATAATTAGGACCAGA+TGG - chr2_1:43058641-43058660 Msa0208390:intron 35.0%
GTGTCGAATATCTATGTATG+TGG + chr2_1:43058678-43058697 None:intergenic 35.0%
!! GTTGCTAACATGAAAGCATT+TGG - chr2_1:43058921-43058940 Msa0208390:intron 35.0%
TACAAGAGAATCACTATCAG+AGG - chr2_1:43059023-43059042 Msa0208390:CDS 35.0%
ACATTGGATTATCTTCGCAA+TGG - chr2_1:43059095-43059114 Msa0208390:CDS 35.0%
GAAGATGAGTGATCATGTAA+TGG - chr2_1:43059224-43059243 Msa0208390:five_prime_UTR 35.0%
!! TGAGTGATCATGTAATGGAT+AGG - chr2_1:43059229-43059248 Msa0208390:five_prime_UTR 35.0%
TAAAATGCTACTATTGCCTC+AGG - chr2_1:43059256-43059275 Msa0208390:five_prime_UTR 35.0%
TTCCAAAGATTAAGTTCCTG+AGG + chr2_1:43059275-43059294 None:intergenic 35.0%
AAAATTGGACGGCGAAAAAG+TGG + chr2_1:43056206-43056225 None:intergenic 40.0%
! TTTAGTCTTTCGTTGAAGCC+AGG - chr2_1:43056436-43056455 Msa0208390:CDS 40.0%
TTTGCAACTCCATTAACTCC+AGG - chr2_1:43056556-43056575 Msa0208390:CDS 40.0%
CCAAACAAATGATGAGTACC+TGG + chr2_1:43056582-43056601 None:intergenic 40.0%
CCAGGTACTCATCATTTGTT+TGG - chr2_1:43056579-43056598 Msa0208390:CDS 40.0%
AAACCAACCTGTGAATTGGT+CGG + chr2_1:43056689-43056708 None:intergenic 40.0%
GATCAAACCAACCTGTGAAT+TGG + chr2_1:43056693-43056712 None:intergenic 40.0%
! CAGGTTGAATTAACTGCTGT+TGG + chr2_1:43056721-43056740 None:intergenic 40.0%
TTACCATCCGGTTCAATATC+CGG - chr2_1:43056785-43056804 Msa0208390:intron 40.0%
!! AGGTTCTAAGTTAACACCAC+CGG + chr2_1:43057428-43057447 None:intergenic 40.0%
CTAGAAAAGGGTTCAAGTCT+TGG + chr2_1:43057593-43057612 None:intergenic 40.0%
! CAAGACTTGAACCCTTTTCT+AGG - chr2_1:43057591-43057610 Msa0208390:CDS 40.0%
! CGGATCTTGAGTGATTTTGT+TGG + chr2_1:43057714-43057733 None:intergenic 40.0%
CCATACTAGATAACCAATGG+CGG + chr2_1:43057734-43057753 None:intergenic 40.0%
!!! TCCTATTTTGGCACTTTTCC+AGG - chr2_1:43057796-43057815 Msa0208390:intron 40.0%
! TAACTAGAGCATCAATAGCC+TGG + chr2_1:43057817-43057836 None:intergenic 40.0%
ATTGGAAGAGTTGTGACTTC+TGG - chr2_1:43057836-43057855 Msa0208390:intron 40.0%
TTGGAAGAGTTGTGACTTCT+GGG - chr2_1:43057837-43057856 Msa0208390:intron 40.0%
!! TGGTTATGGGAGTATTCACT+TGG - chr2_1:43057885-43057904 Msa0208390:intron 40.0%
!! GGTTATGGGAGTATTCACTT+GGG - chr2_1:43057886-43057905 Msa0208390:intron 40.0%
! CCAGAAAAGAGAGTGTAGTT+CGG + chr2_1:43058020-43058039 None:intergenic 40.0%
GTCCACTAAATCCTGCAAAA+AGG + chr2_1:43058173-43058192 None:intergenic 40.0%
!! TTTAGTGGACTGTCAGCTTA+TGG - chr2_1:43058183-43058202 Msa0208390:intron 40.0%
CAAACCACAAAAGGGTGAAA+AGG - chr2_1:43058224-43058243 Msa0208390:intron 40.0%
GTATTTGTTTCAGCAGCATC+TGG - chr2_1:43058246-43058265 Msa0208390:intron 40.0%
! GCCCTTGAGTACAAAGATTT+TGG - chr2_1:43058368-43058387 Msa0208390:intron 40.0%
! TGATGATGCCTTCAACTACA+AGG - chr2_1:43058464-43058483 Msa0208390:intron 40.0%
GGTTTCTTCCTTGTAGTTGA+AGG + chr2_1:43058475-43058494 None:intergenic 40.0%
! TATTTCAGGTACTTTCCCGA+TGG - chr2_1:43058849-43058868 Msa0208390:intron 40.0%
! TTTGGTAGAGTGTCTGTTTG+TGG - chr2_1:43058939-43058958 Msa0208390:intron 40.0%
GAGAGCTTCACCAAATATGA+TGG - chr2_1:43058992-43059011 Msa0208390:CDS 40.0%
AGAGTCCAACAAATGCAGAA+GGG + chr2_1:43059166-43059185 None:intergenic 40.0%
AAGAGTCCAACAAATGCAGA+AGG + chr2_1:43059167-43059186 None:intergenic 40.0%
! GCATTTGTTGGACTCTTCAA+TGG - chr2_1:43059170-43059189 Msa0208390:CDS 40.0%
CTCTTCAATGGAGATAACGT+TGG - chr2_1:43059182-43059201 Msa0208390:exon 40.0%
!! GTGATCATGTAATGGATAGG+AGG - chr2_1:43059232-43059251 Msa0208390:five_prime_UTR 40.0%
TGCCTCAGGAACTTAATCTT+TGG - chr2_1:43059270-43059289 Msa0208390:five_prime_UTR 40.0%
! TTGGAAATGTCGCTTCTTGC+AGG - chr2_1:43056180-43056199 Msa0208390:three_prime_UTR 45.0%
TCGCATTGAAGATTCCCCAA+AGG - chr2_1:43056384-43056403 Msa0208390:CDS 45.0%
!! AAGCGCTGTAGCTTTTCATG+CGG + chr2_1:43056519-43056538 None:intergenic 45.0%
TCAAGAACCGACCAATTCAC+AGG - chr2_1:43056679-43056698 Msa0208390:intron 45.0%
!! TTCACAGGTTGGTTTGATCG+TGG - chr2_1:43056694-43056713 Msa0208390:intron 45.0%
! AGAACATGACGGAATCGACA+CGG + chr2_1:43057149-43057168 None:intergenic 45.0%
!! GGTTCTAAGTTAACACCACC+GGG + chr2_1:43057427-43057446 None:intergenic 45.0%
ATGCTTCTCTTCAAGGTCTC+AGG - chr2_1:43057454-43057473 Msa0208390:intron 45.0%
AATCACTCAAGATCCGCCAT+TGG - chr2_1:43057718-43057737 Msa0208390:intron 45.0%
! CCGCCATTGGTTATCTAGTA+TGG - chr2_1:43057731-43057750 Msa0208390:intron 45.0%
!! GCCTGGAAAAGTGCCAAAAT+AGG + chr2_1:43057800-43057819 None:intergenic 45.0%
GGCTGAGTACAGTGTAGTTA+AGG - chr2_1:43057907-43057926 Msa0208390:intron 45.0%
! CCGAACTACACTCTCTTTTC+TGG - chr2_1:43058017-43058036 Msa0208390:intron 45.0%
GTGGTTCTTAGTACTCCATC+TGG + chr2_1:43058659-43058678 None:intergenic 45.0%
AGTTGCAGGTGATTGAAGAC+AGG - chr2_1:43059120-43059139 Msa0208390:CDS 45.0%
GTGATTGAAGACAGGTCGTT+GGG - chr2_1:43059128-43059147 Msa0208390:CDS 45.0%
AGCATCCCTTCTGCATTTGT+TGG - chr2_1:43059158-43059177 Msa0208390:CDS 45.0%
!!! TATATCATATATTTTTAATT+TGG + chr2_1:43057315-43057334 None:intergenic 5.0%
AACTCCATTAACTCCAGGCC+AGG - chr2_1:43056561-43056580 Msa0208390:CDS 50.0%
AGTACCTGGCCTGGAGTTAA+TGG + chr2_1:43056568-43056587 None:intergenic 50.0%
CAAATGATGAGTACCTGGCC+TGG + chr2_1:43056577-43056596 None:intergenic 50.0%
GAACCGACCAATTCACAGGT+TGG - chr2_1:43056683-43056702 Msa0208390:intron 50.0%
TAAGTTAACACCACCGGGCA+GGG + chr2_1:43057422-43057441 None:intergenic 50.0%
!! AGTGGACTGTCAGCTTATGG+AGG - chr2_1:43058186-43058205 Msa0208390:intron 50.0%
TCAGCAGCATCTGGATCAGT+TGG - chr2_1:43058255-43058274 Msa0208390:intron 50.0%
! TGCTATGTTGTTGGCTGTGC+TGG - chr2_1:43058312-43058331 Msa0208390:intron 50.0%
! GCTATGTTGTTGGCTGTGCT+GGG - chr2_1:43058313-43058332 Msa0208390:intron 50.0%
CTGTGCTGGGAGCCAAAAAA+AGG - chr2_1:43058326-43058345 Msa0208390:intron 50.0%
GCGATGTCAAATACTCCCTC+TGG - chr2_1:43058526-43058545 Msa0208390:intron 50.0%
TCTTCGCAATGGTCAGTTGC+AGG - chr2_1:43059106-43059125 Msa0208390:CDS 50.0%
GGTGATTGAAGACAGGTCGT+TGG - chr2_1:43059127-43059146 Msa0208390:CDS 50.0%
CCACCGGATATTGAACCGGA+TGG + chr2_1:43056791-43056810 None:intergenic 55.0%
CCATCCGGTTCAATATCCGG+TGG - chr2_1:43056788-43056807 Msa0208390:intron 55.0%
CCTGCCACCGGATATTGAAC+CGG + chr2_1:43056795-43056814 None:intergenic 55.0%
CGGTTCAATATCCGGTGGCA+GGG - chr2_1:43056793-43056812 Msa0208390:intron 55.0%
GGTTCAATATCCGGTGGCAG+GGG - chr2_1:43056794-43056813 Msa0208390:intron 55.0%
ATAGCCACACCCAGCCTTGA+AGG - chr2_1:43057389-43057408 Msa0208390:intron 55.0%
TAGCCACACCCAGCCTTGAA+GGG - chr2_1:43057390-43057409 Msa0208390:intron 55.0%
CTAAGTTAACACCACCGGGC+AGG + chr2_1:43057423-43057442 None:intergenic 55.0%
ACTATCTGCGTGCGATGGCA+TGG + chr2_1:43057514-43057533 None:intergenic 55.0%
TGCAGACTATCTGCGTGCGA+TGG + chr2_1:43057519-43057538 None:intergenic 55.0%
CCGGTTCAATATCCGGTGGC+AGG - chr2_1:43056792-43056811 Msa0208390:intron 60.0%
TCAATATCCGGTGGCAGGGG+CGG - chr2_1:43056797-43056816 Msa0208390:intron 60.0%
GATCCCTTCAAGGCTGGGTG+TGG + chr2_1:43057396-43057415 None:intergenic 60.0%
GGACGGATCCCTTCAAGGCT+GGG + chr2_1:43057401-43057420 None:intergenic 60.0%
TTAACACCACCGGGCAGGGA+CGG + chr2_1:43057418-43057437 None:intergenic 60.0%
GGGACGGATCCCTTCAAGGC+TGG + chr2_1:43057402-43057421 None:intergenic 65.0%
GGCAGGGACGGATCCCTTCA+AGG + chr2_1:43057406-43057425 None:intergenic 65.0%
TGAAGGGATCCGTCCCTGCC+CGG - chr2_1:43057406-43057425 Msa0208390:intron 65.0%
TCCGGTGGCAGGGGCGGATC+TGG - chr2_1:43056803-43056822 Msa0208390:intron 75.0%
CCCAGATCCGCCCCTGCCAC+CGG + chr2_1:43056807-43056826 None:intergenic 75.0%
CCGGTGGCAGGGGCGGATCT+GGG - chr2_1:43056804-43056823 Msa0208390:intron 75.0%
AGGGATCCGTCCCTGCCCGG+TGG - chr2_1:43057409-43057428 Msa0208390:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 43056159 43059388 43056159 ID=Msa0208390;Name=Msa0208390
chr2_1 mRNA 43056159 43059388 43056159 ID=Msa0208390-mRNA-1;Parent=Msa0208390;Name=Msa0208390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|1|1|5|153|346
chr2_1 exon 43056159 43056690 43056159 ID=Msa0208390-mRNA-1:exon:12828;Parent=Msa0208390-mRNA-1
chr2_1 exon 43057030 43057112 43057030 ID=Msa0208390-mRNA-1:exon:12827;Parent=Msa0208390-mRNA-1
chr2_1 exon 43057200 43057366 43057200 ID=Msa0208390-mRNA-1:exon:12826;Parent=Msa0208390-mRNA-1
chr2_1 exon 43057552 43057729 43057552 ID=Msa0208390-mRNA-1:exon:12825;Parent=Msa0208390-mRNA-1
chr2_1 exon 43058965 43059388 43058965 ID=Msa0208390-mRNA-1:exon:12824;Parent=Msa0208390-mRNA-1
chr2_1 five_prime_UTR 43059199 43059388 43059199 ID=Msa0208390-mRNA-1:five_prime_utr;Parent=Msa0208390-mRNA-1
chr2_1 CDS 43058965 43059198 43058965 ID=Msa0208390-mRNA-1:cds;Parent=Msa0208390-mRNA-1
chr2_1 CDS 43057552 43057729 43057552 ID=Msa0208390-mRNA-1:cds;Parent=Msa0208390-mRNA-1
chr2_1 CDS 43057200 43057366 43057200 ID=Msa0208390-mRNA-1:cds;Parent=Msa0208390-mRNA-1
chr2_1 CDS 43057030 43057112 43057030 ID=Msa0208390-mRNA-1:cds;Parent=Msa0208390-mRNA-1
chr2_1 CDS 43056312 43056690 43056312 ID=Msa0208390-mRNA-1:cds;Parent=Msa0208390-mRNA-1
chr2_1 three_prime_UTR 43056159 43056311 43056159 ID=Msa0208390-mRNA-1:three_prime_utr;Parent=Msa0208390-mRNA-1
Gene Sequence

>Msa0208390

ATGGAAGTGACCAACAAATACATAGTGATAAAGCATCGCATTGAAGATTCCCCAAAGGAGTCACATTTTGAAGTCAAAACTGAGGCGTTTAGTCTTTCGTTGAAGCCAGGTTCTGATGAAGTGATAATAAAGAATCTATATATCTCTATTGATCCTTATCTTATTAACCGCATGAAAAGCTACAGCGCTTCTCATAATGCCATTAGCTTTGCAACTCCATTAACTCCAGGCCAGGCTATTGATGCTCTAGTTATTGGAAGAGTTGTGACTTCTGGGAATGCTAAGTTTGAGAAAGATGATTTGGTTATGGGAGTATTCACTTGGGCTGAGTACAGTGTAGTTAAGGAACAAAGCATCATAAAAAAATTAGAGTCCTTTGAATTTCCACTCACTTATCATCTTGGAATTCTTGGATTTAGTGGACTGTCAGCTTATGGAGGATTTTTTGAAATTTGCAAACCACAAAAGGGTGAAAAGGTATTTGTTTCAGCAGCATCTGGATCAGTTGGAAATATTGTAGGACAATATGCAAAACTTTTAGGTTGCTATGTTGTTGGCTGTGCTGGGAGCCAAAAAAAGGTGACATTACTCAAAGAAGAGCTAGGATTTGATGATGCCTTCAACTACAAGGAAGAAACCGATCTAAACTCCACTCTTAAAAGGTACTTTCCCGATGGAATTGACATATATTTTGACAATGTCGGGGGAGAAATGCTAGAAGCAGCAGTTGCTAACATGAAAGCATTTGGTAGAGTGTCTGTTTGTGGTGTAATTTCTGAGTATACTGATGTTGGAAAGAGAGCTTCACCAAATATGATGGATGTTGTATACAAGAGAATCACTATCAGAGGATTTTTAGCTGCTGATTATATGAATGTTTTTGGAGATTTTTCTGCTAAAACATTGGATTATCTTCGCAATGGTCAGTTGCAGGTGATTGAAGACAGGTCGTTGGGTGTAGAGAGCATCCCTTCTGCATTTGTTGGACTCTTCAATGGAGATAACGTTGGAAAGAAAGTTGTTGTTTTAGAAGATGAGTGA

Protein sequence

>Msa0208390

MEVTNKYIVIKHRIEDSPKESHFEVKTEAFSLSLKPGSDEVIIKNLYISIDPYLINRMKSYSASHNAISFATPLTPGQAIDALVIGRVVTSGNAKFEKDDLVMGVFTWAEYSVVKEQSIIKKLESFEFPLTYHLGILGFSGLSAYGGFFEICKPQKGEKVFVSAASGSVGNIVGQYAKLLGCYVVGCAGSQKKVTLLKEELGFDDAFNYKEETDLNSTLKRYFPDGIDIYFDNVGGEMLEAAVANMKAFGRVSVCGVISEYTDVGKRASPNMMDVVYKRITIRGFLAADYMNVFGDFSAKTLDYLRNGQLQVIEDRSLGVESIPSAFVGLFNGDNVGKKVVVLEDE*