AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357210 MtrunA17_Chr3g0093971 94.040 453 27 0 1 453 2 454 0.0 899
Msa0357210 MtrunA17_Chr2g0285351 44.348 460 233 6 8 449 11 465 4.04e-137 402
Msa0357210 MtrunA17_Chr2g0285371 44.091 440 228 5 23 449 31 465 9.34e-134 393
Msa0357210 MtrunA17_Chr2g0285381 44.342 433 230 4 23 449 34 461 4.61e-133 391
Msa0357210 MtrunA17_Chr4g0009681 43.274 446 235 9 14 449 26 463 1.02e-125 373
Msa0357210 MtrunA17_Chr4g0009701 42.152 446 240 9 14 449 29 466 5.19e-124 369
Msa0357210 MtrunA17_Chr3g0133011 42.605 453 237 6 16 449 44 492 6.90e-124 369
Msa0357210 MtrunA17_Chr4g0009711 42.444 450 242 8 10 449 24 466 7.11e-124 368
Msa0357210 MtrunA17_Chr4g0009651 41.256 446 244 9 14 449 29 466 5.70e-121 361
Msa0357210 MtrunA17_Chr4g0009661 41.704 446 242 9 14 449 29 466 5.03e-120 358
Msa0357210 MtrunA17_Chr4g0009671 41.395 430 231 9 32 449 11 431 3.39e-115 345
Msa0357210 MtrunA17_Chr4g0009641 38.530 449 237 9 10 449 24 442 1.72e-106 323
Msa0357210 MtrunA17_Chr4g0009721 37.168 452 220 9 8 449 18 415 5.97e-97 297
Msa0357210 MtrunA17_Chr8g0338461 32.863 496 275 9 7 453 9 495 1.74e-88 278
Msa0357210 MtrunA17_Chr7g0234051 32.041 490 280 8 7 449 8 491 1.27e-84 268
Msa0357210 MtrunA17_Chr7g0249431 31.224 490 282 11 7 448 11 493 1.95e-81 260
Msa0357210 MtrunA17_Chr7g0234041 31.364 440 229 11 23 408 24 444 4.68e-62 208
Msa0357210 MtrunA17_Chr2g0281621 29.911 448 272 17 25 452 35 460 4.70e-49 174
Msa0357210 MtrunA17_Chr4g0068841 27.790 457 284 12 21 449 34 472 3.02e-48 172
Msa0357210 MtrunA17_Chr3g0094811 27.778 468 287 16 6 448 7 448 9.16e-48 170
Msa0357210 MtrunA17_Chr2g0309511 28.637 433 279 12 25 445 39 453 2.43e-47 169
Msa0357210 MtrunA17_Chr1g0199991 27.778 432 283 11 26 445 33 447 4.84e-47 168
Msa0357210 MtrunA17_Chr1g0199971 27.293 458 297 12 7 445 7 447 1.43e-46 167
Msa0357210 MtrunA17_Chr2g0304931 27.546 432 283 12 29 447 41 455 3.99e-46 166
Msa0357210 MtrunA17_Chr4g0038311 26.407 462 312 12 6 448 5 457 5.85e-46 166
Msa0357210 MtrunA17_Chr4g0047861 28.176 433 274 16 25 437 53 468 7.04e-46 166
Msa0357210 MtrunA17_Chr3g0118851 28.706 425 277 12 29 448 81 484 1.99e-45 164
Msa0357210 MtrunA17_Chr2g0309521 27.816 435 280 14 25 445 39 453 2.45e-45 164
Msa0357210 MtrunA17_Chr7g0219051 27.294 436 289 13 28 449 38 459 3.51e-45 163
Msa0357210 MtrunA17_Chr3g0118841 27.934 426 284 10 26 448 79 484 5.74e-45 163
Msa0357210 MtrunA17_Chr2g0279381 36.916 214 114 3 209 407 4 211 2.88e-44 154
Msa0357210 MtrunA17_Chr2g0309541 27.335 439 289 12 24 449 37 458 6.70e-44 160
Msa0357210 MtrunA17_Chr2g0318911 26.667 435 293 12 25 449 40 458 1.21e-42 157
Msa0357210 MtrunA17_Chr4g0068861 28.814 413 250 16 21 405 80 476 3.80e-42 155
Msa0357210 MtrunA17_Chr4g0028271 27.830 424 266 11 42 452 99 495 4.94e-42 155
Msa0357210 MtrunA17_Chr4g0020241 26.959 434 280 14 26 448 74 481 6.34e-42 155
Msa0357210 MtrunA17_Chr2g0279371 41.489 188 94 2 6 192 8 180 9.04e-42 146
Msa0357210 MtrunA17_Chr1g0153881 27.336 428 280 12 26 448 90 491 2.50e-41 154
Msa0357210 MtrunA17_Chr1g0171411 28.605 423 255 14 42 447 85 477 1.20e-40 151
Msa0357210 MtrunA17_Chr2g0281641 28.941 387 237 13 72 437 1 370 2.10e-40 149
Msa0357210 MtrunA17_Chr3g0090331 24.654 434 294 13 26 449 75 485 8.03e-40 149
Msa0357210 MtrunA17_Chr3g0118881 28.182 440 278 13 29 453 81 497 1.31e-39 149
Msa0357210 MtrunA17_Chr4g0028281 27.187 423 270 11 42 452 97 493 1.35e-39 149
Msa0357210 MtrunA17_Chr2g0327401 27.191 445 288 11 16 453 85 500 5.30e-39 147
Msa0357210 MtrunA17_Chr3g0131731 24.654 434 301 10 29 448 34 455 6.25e-39 146
Msa0357210 MtrunA17_Chr1g0199171 26.591 440 286 12 28 452 71 488 8.53e-39 146
Msa0357210 MtrunA17_Chr7g0221551 23.871 465 306 13 7 448 12 451 2.79e-38 144
Msa0357210 MtrunA17_Chr4g0028261 26.698 427 268 11 42 452 120 517 1.38e-37 143
Msa0357210 MtrunA17_Chr3g0126051 25.602 457 312 13 3 443 8 452 3.04e-37 142
Msa0357210 MtrunA17_Chr3g0118831 26.620 432 262 11 26 453 78 458 6.96e-37 140
Msa0357210 MtrunA17_Chr3g0118861 27.438 441 256 14 26 452 76 466 8.98e-37 140
Msa0357210 MtrunA17_Chr3g0126031 24.766 428 303 9 25 443 28 445 2.27e-36 139
Msa0357210 MtrunA17_Chr8g0385871 25.612 449 282 16 26 448 34 456 2.69e-36 139
Msa0357210 MtrunA17_Chr5g0431301 25.342 438 300 12 25 447 29 454 4.09e-36 139
Msa0357210 MtrunA17_Chr4g0028241 25.882 425 275 11 43 452 92 491 1.09e-35 138
Msa0357210 MtrunA17_Chr2g0327371 26.240 484 277 18 17 453 65 515 1.26e-35 138
Msa0357210 MtrunA17_Chr2g0327381 25.510 490 290 17 20 452 67 538 1.98e-35 138
Msa0357210 MtrunA17_Chr1g0153941 25.870 460 273 14 26 448 78 506 2.15e-34 134
Msa0357210 MtrunA17_Chr3g0118891 26.698 427 250 14 29 448 81 451 3.38e-32 127
Msa0357210 MtrunA17_Chr5g0447441 24.528 424 277 13 36 447 39 431 5.26e-29 118
Msa0357210 MtrunA17_Chr1g0204191 24.318 440 267 15 26 447 92 483 4.88e-28 116
Msa0357210 MtrunA17_Chr4g0044051 23.150 419 281 10 41 447 46 435 6.07e-26 109
Msa0357210 MtrunA17_Chr1g0153931 35.326 184 110 5 26 205 76 254 4.92e-25 103
Msa0357210 MtrunA17_Chr1g0165811 28.507 221 143 6 26 244 31 238 5.28e-24 100
Msa0357210 MtrunA17_Chr1g0153921 29.614 233 129 9 225 448 4 210 5.46e-17 79.7
Msa0357210 MtrunA17_Chr2g0285401 38.095 84 40 1 342 413 7 90 6.32e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357210 AT1G33540.1 46.050 443 221 7 20 449 23 460 7.17e-135 396
Msa0357210 AT5G36180.1 45.602 432 212 5 20 449 27 437 9.22e-132 388
Msa0357210 AT1G73300.1 45.139 432 214 5 20 449 27 437 7.19e-131 385
Msa0357210 AT1G73300.2 45.139 432 214 5 20 449 27 437 7.19e-131 385
Msa0357210 AT1G73280.1 43.722 446 228 5 4 447 11 435 2.08e-130 384
Msa0357210 AT1G73310.1 45.833 432 211 5 20 449 27 437 7.43e-130 383
Msa0357210 AT1G73270.2 46.296 432 209 5 20 449 27 437 4.51e-129 381
Msa0357210 AT1G73270.1 46.296 432 209 5 20 449 27 437 7.41e-129 380
Msa0357210 AT3G10450.1 44.289 429 218 4 22 449 25 433 3.75e-128 378
Msa0357210 AT2G23000.1 45.538 437 209 6 20 449 19 433 8.19e-128 377
Msa0357210 AT2G23000.2 45.538 437 209 6 20 449 19 433 8.19e-128 377
Msa0357210 AT3G12203.1 43.151 438 227 4 13 449 17 433 1.66e-126 374
Msa0357210 AT1G73290.1 44.444 432 215 6 20 449 26 434 2.27e-126 374
Msa0357210 AT3G12203.3 43.187 433 224 4 18 449 1 412 3.14e-126 373
Msa0357210 AT2G22980.1 44.342 433 212 7 20 449 20 426 1.71e-124 369
Msa0357210 AT2G22920.2 43.880 433 220 5 20 449 19 431 2.72e-124 368
Msa0357210 AT1G33540.2 45.107 419 212 7 44 449 4 417 3.46e-124 367
Msa0357210 AT2G22970.1 44.444 432 217 6 20 449 19 429 1.04e-123 367
Msa0357210 AT2G23010.1 43.665 442 232 6 9 449 8 433 5.10e-123 365
Msa0357210 AT2G23010.2 43.439 442 233 6 9 449 8 433 1.32e-122 364
Msa0357210 AT2G22990.1 42.459 431 229 5 20 449 17 429 1.94e-122 363
Msa0357210 AT3G12220.1 43.779 434 221 5 22 453 23 435 6.17e-121 360
Msa0357210 AT1G73310.2 46.076 395 195 3 20 412 27 405 1.01e-120 359
Msa0357210 AT3G10450.4 45.063 395 201 2 22 415 25 404 1.15e-120 358
Msa0357210 AT5G09640.1 40.481 457 249 9 8 447 9 459 8.11e-118 353
Msa0357210 AT1G73290.3 44.924 394 197 4 20 411 26 401 9.49e-117 348
Msa0357210 AT2G22970.3 44.417 412 207 5 20 429 19 410 2.66e-116 348
Msa0357210 AT2G22970.4 44.282 411 207 5 20 428 19 409 4.37e-116 347
Msa0357210 AT2G22990.5 41.531 431 224 6 20 449 17 420 9.80e-116 346
Msa0357210 AT2G22980.2 43.447 412 205 6 20 428 20 406 1.15e-115 345
Msa0357210 AT2G22980.4 43.552 411 204 6 20 427 20 405 5.11e-115 345
Msa0357210 AT3G10450.2 42.260 407 214 4 44 449 4 390 1.54e-114 342
Msa0357210 AT2G22990.3 42.195 410 219 4 20 428 17 409 2.66e-114 343
Msa0357210 AT2G22990.4 42.298 409 218 4 20 427 17 408 2.71e-114 342
Msa0357210 AT2G22920.1 44.133 392 201 3 20 408 19 395 6.38e-113 338
Msa0357210 AT3G12230.1 41.026 429 232 4 22 449 23 431 4.89e-112 337
Msa0357210 AT3G12240.1 40.698 430 232 5 22 449 24 432 9.45e-112 336
Msa0357210 AT3G12220.2 42.233 412 215 5 44 453 15 405 5.36e-109 328
Msa0357210 AT3G12203.2 41.162 396 211 4 55 449 1 375 5.00e-108 325
Msa0357210 AT3G10450.3 42.895 373 197 2 44 415 4 361 8.57e-107 322
Msa0357210 AT1G73280.2 43.869 367 188 3 4 368 11 361 2.78e-103 313
Msa0357210 AT2G22980.3 43.785 354 173 6 20 368 20 352 1.20e-94 290
Msa0357210 AT3G12220.3 38.799 433 192 5 22 453 23 383 3.69e-94 289
Msa0357210 AT2G22920.4 46.302 311 151 2 20 329 19 314 1.06e-90 278
Msa0357210 AT2G22970.2 46.302 311 150 3 20 329 19 313 1.14e-89 276
Msa0357210 AT1G73280.4 40.171 351 188 4 98 447 4 333 3.76e-88 272
Msa0357210 AT5G36180.5 40.510 353 188 4 98 449 4 335 4.19e-88 272
Msa0357210 AT5G36180.3 40.510 353 188 4 98 449 4 335 4.19e-88 272
Msa0357210 AT4G12910.1 32.530 498 285 8 1 453 6 497 7.72e-87 274
Msa0357210 AT1G73290.2 49.248 266 132 2 20 284 26 289 9.08e-87 268
Msa0357210 AT3G25420.1 31.873 502 277 10 1 449 1 490 5.06e-84 267
Msa0357210 AT1G73280.3 40.122 329 175 4 120 447 1 308 4.40e-82 256
Msa0357210 AT2G22990.6 38.739 333 186 4 117 449 1 315 3.01e-81 254
Msa0357210 AT5G36180.2 40.060 332 178 3 98 428 4 315 4.02e-81 254
Msa0357210 AT2G22990.2 38.438 333 187 4 117 449 1 315 1.33e-80 252
Msa0357210 AT1G73310.3 41.139 316 169 2 98 412 4 303 4.26e-80 251
Msa0357210 AT5G36180.4 41.158 311 166 2 98 407 4 298 5.43e-78 246
Msa0357210 AT4G12910.2 32.522 452 258 7 1 407 6 455 1.77e-77 249
Msa0357210 AT2G22980.5 39.172 314 164 5 117 428 1 289 3.27e-70 224
Msa0357210 AT2G22920.3 37.453 267 145 4 185 449 6 252 2.58e-55 185
Msa0357210 AT5G23210.1 29.176 449 273 12 26 444 52 485 5.23e-55 191
Msa0357210 AT2G05850.1 28.605 430 277 12 25 443 63 473 5.12e-51 180
Msa0357210 AT3G52020.1 28.670 436 283 12 25 451 79 495 9.94e-50 177
Msa0357210 AT3G52000.1 27.059 425 285 9 25 443 63 468 1.50e-49 176
Msa0357210 AT3G52010.1 28.538 431 275 13 25 443 64 473 1.97e-49 176
Msa0357210 AT1G61130.1 28.637 433 273 13 25 439 31 445 2.74e-49 175
Msa0357210 AT4G15100.1 28.256 453 281 13 18 444 37 471 3.92e-49 175
Msa0357210 AT2G35770.1 27.851 456 288 12 3 438 8 442 1.09e-47 170
Msa0357210 AT2G35780.1 28.538 431 273 13 29 445 33 442 4.07e-47 169
Msa0357210 AT1G11080.2 29.318 440 269 13 25 438 50 473 3.43e-46 167
Msa0357210 AT1G11080.1 29.318 440 269 13 25 438 50 473 3.49e-46 167
Msa0357210 AT5G23210.3 28.049 410 255 11 26 405 52 451 7.10e-46 166
Msa0357210 AT5G22980.1 29.009 424 260 12 42 452 100 495 1.97e-45 165
Msa0357210 AT3G10410.1 29.343 426 258 12 42 453 101 497 2.34e-45 165
Msa0357210 AT3G17180.1 27.146 431 276 15 42 449 55 470 2.38e-45 164
Msa0357210 AT4G30810.1 24.839 467 316 11 4 449 5 457 1.52e-44 162
Msa0357210 AT2G24010.1 26.728 434 292 13 25 449 30 446 3.34e-44 161
Msa0357210 AT3G63470.1 26.807 429 281 15 25 443 81 486 5.66e-44 161
Msa0357210 AT3G45010.1 27.739 429 269 12 38 452 99 500 1.81e-43 160
Msa0357210 AT1G28110.1 26.096 456 269 14 26 448 32 452 3.81e-43 158
Msa0357210 AT1G28110.2 26.096 456 269 14 26 448 32 452 3.81e-43 158
Msa0357210 AT2G24000.1 26.802 444 287 13 26 449 31 456 4.50e-43 158
Msa0357210 AT5G08260.1 26.531 441 291 15 31 449 42 471 8.53e-43 157
Msa0357210 AT1G43780.1 25.694 432 299 10 25 443 37 459 1.73e-42 157
Msa0357210 AT4G30610.1 26.244 442 291 14 26 449 33 457 1.92e-42 156
Msa0357210 AT3G07990.1 26.340 429 293 10 26 445 34 448 2.50e-42 156
Msa0357210 AT5G23210.5 27.708 397 243 11 78 444 8 390 8.52e-42 153
Msa0357210 AT5G23210.2 27.525 396 243 11 79 444 8 389 5.84e-41 151
Msa0357210 AT3G17180.2 26.972 393 253 14 42 411 55 436 1.37e-39 148
Msa0357210 AT2G33530.1 25.164 457 274 16 26 448 34 456 1.50e-39 148
Msa0357210 AT2G24010.2 25.612 449 293 14 25 449 30 461 2.45e-39 148
Msa0357210 AT3G02110.1 25.053 475 298 15 9 445 8 462 3.98e-39 147
Msa0357210 AT2G12480.3 25.214 468 308 14 4 449 5 452 2.66e-36 139
Msa0357210 AT2G24010.3 24.895 474 290 17 25 449 1 457 4.10e-36 139
Msa0357210 AT2G12480.4 24.565 460 297 14 4 449 5 428 2.95e-35 136
Msa0357210 AT2G12480.1 24.348 460 296 14 4 449 5 426 2.59e-34 133
Msa0357210 AT2G12480.2 24.130 460 298 14 4 449 5 427 3.54e-33 130
Msa0357210 AT5G42230.1 24.027 437 309 11 25 448 28 454 4.58e-33 130
Msa0357210 AT5G42230.2 24.027 437 309 11 25 448 28 454 4.58e-33 130
Msa0357210 AT2G22960.1 42.222 135 73 2 315 449 51 180 4.93e-33 123
Msa0357210 AT5G42240.1 25.055 455 284 16 25 449 32 459 4.95e-33 130
Msa0357210 AT1G15000.1 26.168 428 266 16 33 447 30 420 6.30e-33 129
Msa0357210 AT5G23210.4 26.050 357 225 10 79 405 8 355 8.15e-32 125
Msa0357210 AT3G56540.1 37.821 156 91 3 25 179 79 229 8.84e-27 108
Msa0357210 AT2G24010.4 25.272 368 239 13 25 368 1 356 5.17e-24 103
Msa0357210 AT5G22960.1 26.380 163 96 2 42 204 36 174 2.36e-16 77.8
Msa0357210 AT2G24000.2 23.050 282 187 8 185 449 125 393 1.71e-15 78.6

Find 113 sgRNAs with CRISPR-Local

Find 428 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTGTGCATTGAAATTT+TGG 0.074854 3_1:-38450604 None:intergenic
GAGACACACTTTGTGTTATT+TGG 0.142435 3_1:-38455330 None:intergenic
AACATCCAAGCTCTCATTTA+TGG 0.152486 3_1:+38455932 Msa0357210:CDS
AGACAATTGAATTGCATTAT+TGG 0.162334 3_1:-38450551 None:intergenic
TTCAAGATGATCAAGAATTT+TGG 0.210650 3_1:+38455540 Msa0357210:CDS
CGTTTACCAATGATGGAAAT+TGG 0.228815 3_1:+38457521 Msa0357210:three_prime_UTR
AGGAATATGCTTCCTTATAT+TGG 0.245065 3_1:+38450621 Msa0357210:five_prime_UTR
CCAACGAACCAAAGTAAAAT+TGG 0.255453 3_1:-38452782 None:intergenic
TCTGCCATTCATGGTTTATT+CGG 0.256799 3_1:+38450979 Msa0357210:CDS
TTAGAGTTATTATCATATTC+TGG 0.265014 3_1:+38455658 Msa0357210:intron
GTAACCTCATAGAGTTCTTT+TGG 0.276248 3_1:-38455129 None:intergenic
GATCAATAAAGGGATTTCTT+TGG 0.279427 3_1:-38452760 None:intergenic
GAACAGGTTGTCGAATTATC+TGG 0.296761 3_1:-38455520 None:intergenic
ACATGAGCATACATGATAAA+TGG 0.302757 3_1:+38456337 Msa0357210:CDS
TTTAATGCTTCTGCCATTCA+TGG 0.306015 3_1:+38450970 Msa0357210:CDS
ATCAATAAAGGGATTTCTTT+GGG 0.306892 3_1:-38452759 None:intergenic
AAGTAAAATTGGATCAATAA+AGG 0.309391 3_1:-38452771 None:intergenic
GAGCCACCACCTATGTAAAA+TGG 0.310655 3_1:-38454440 None:intergenic
CTTTATTCGTTTACCAATGA+TGG 0.320045 3_1:+38457514 Msa0357210:three_prime_UTR
TAATCGTCATCCATTGTTAA+TGG 0.320811 3_1:-38454127 None:intergenic
CTTCCATTCAAGCTTGAAAC+AGG 0.320931 3_1:+38451040 Msa0357210:CDS
CATAGGCTTAAATGAATATA+TGG 0.324271 3_1:-38457479 None:intergenic
AAAATAAAAGTGCCAATATA+AGG 0.326613 3_1:-38450633 None:intergenic
CTAATTGTACTTCGATTTGA+TGG 0.327834 3_1:+38457442 Msa0357210:exon
CAATTACCAATTTCCATCAT+TGG 0.345478 3_1:-38457527 None:intergenic
CTGCCATTCATGGTTTATTC+GGG 0.352819 3_1:+38450980 Msa0357210:CDS
ATCATATTCTGGTCGACATA+TGG 0.356883 3_1:+38455669 Msa0357210:CDS
CACCCTGTTTCAAGCTTGAA+TGG 0.358249 3_1:-38451043 None:intergenic
ATAGGTGGTGGCTCATATTC+AGG 0.362426 3_1:+38454449 Msa0357210:CDS
TCTATTGTCAAGAAACTTCC+TGG 0.362765 3_1:+38451004 Msa0357210:CDS
TATGGATTCAATTTAAGCTT+TGG 0.364416 3_1:-38454163 None:intergenic
GATCATATTATAAACTTCCT+TGG 0.367287 3_1:-38457393 None:intergenic
AATAATTCAGAACCATTATC+TGG 0.378302 3_1:+38450693 Msa0357210:five_prime_UTR
AATGGATTTGAGCTAAACTT+TGG 0.381264 3_1:-38454422 None:intergenic
ATCATATTATAAACTTCCTT+GGG 0.382265 3_1:-38457392 None:intergenic
CATTTAAGCCTATGTCTTTG+TGG 0.387571 3_1:+38457488 Msa0357210:three_prime_UTR
TGAATAAACTCACCAGATAA+TGG 0.391136 3_1:-38450705 None:intergenic
CTTTGGTTCGTTGGAGGTCC+AGG 0.395793 3_1:+38452791 Msa0357210:CDS
ACATCCAAGCTCTCATTTAT+GGG 0.397259 3_1:+38455933 Msa0357210:CDS
AATTCTTGATCATCTTGAAC+AGG 0.398440 3_1:-38455536 None:intergenic
AGTAAAATTGGATCAATAAA+GGG 0.403601 3_1:-38452770 None:intergenic
AAGCTTAAATTGAATCCATA+TGG 0.406503 3_1:+38454166 Msa0357210:CDS
TCACGTTTATATGCTTATAC+AGG 0.423746 3_1:-38455074 None:intergenic
CACAACTGAGTACACAATCT+TGG 0.425607 3_1:+38456301 Msa0357210:CDS
GTCATTGGAGGAAAATTGTA+AGG 0.427277 3_1:+38455287 Msa0357210:intron
AACATATGTGTCCAACCATA+TGG 0.429002 3_1:-38454181 None:intergenic
TAATCAGCACGATTGATTGC+AGG 0.432478 3_1:+38457655 Msa0357210:three_prime_UTR
CTTACTTTGATGTTTATATG+TGG 0.434551 3_1:-38454932 None:intergenic
CTTCCGGTTGTGTAGTGTGA+TGG 0.436707 3_1:+38450916 Msa0357210:intron
TCATATTCTGGTCGACATAT+GGG 0.442425 3_1:+38455670 Msa0357210:CDS
TGTCCAAAATTTCAATGCAC+AGG 0.450191 3_1:+38450601 Msa0357210:five_prime_UTR
TTCTGAATTATTGTGAGAAA+TGG 0.451258 3_1:-38450682 None:intergenic
AGATGCAGCTGTATTGTGTT+AGG 0.452210 3_1:+38450944 Msa0357210:CDS
CAATTTAAATAGGGAACTAA+AGG 0.455614 3_1:+38455824 Msa0357210:intron
TTTGAGATGCAACAAGACTT+TGG 0.458687 3_1:+38455853 Msa0357210:CDS
TGCTTATACAGGTCAACAGC+AGG 0.461979 3_1:-38455063 None:intergenic
AATTTAAATAGGGAACTAAA+GGG 0.469468 3_1:+38455825 Msa0357210:intron
CGAATTATCTGGTTTACAGC+AGG 0.475505 3_1:-38455509 None:intergenic
ATTGTCATTCTACAGGGTGC+TGG 0.485614 3_1:+38457347 Msa0357210:intron
TAATTGTACTTCGATTTGAT+GGG 0.497555 3_1:+38457443 Msa0357210:exon
TTTGTTGAAGGTCAAGTAGC+CGG 0.506940 3_1:+38456369 Msa0357210:CDS
TTCCGGTTGTGTAGTGTGAT+GGG 0.507466 3_1:+38450917 Msa0357210:intron
GTTACCCATAAATGAGAGCT+TGG 0.518502 3_1:-38455937 None:intergenic
TAAAGAATCCACAAAGACAT+AGG 0.521424 3_1:-38457496 None:intergenic
TTGTTGAAGGTCAAGTAGCC+GGG 0.522863 3_1:+38456370 Msa0357210:CDS
GAACCCGAATAAACCATGAA+TGG 0.531753 3_1:-38450983 None:intergenic
GCGATAATATTCTACAGCAC+TGG 0.536867 3_1:-38455894 None:intergenic
TATAATGTTGCAGTCATTGG+AGG 0.537774 3_1:+38455275 Msa0357210:intron
GATTCAATTTAAGCTTTGGA+AGG 0.537959 3_1:-38454159 None:intergenic
TTAAATTGAATCCATATGGT+TGG 0.543123 3_1:+38454170 Msa0357210:CDS
GCTGAAAGTGCAGAACATCC+TGG 0.543233 3_1:-38452809 None:intergenic
CAAGACATAGTTGCTAGGAA+TGG 0.549822 3_1:-38457575 None:intergenic
TATACCAAAAGAACTCTATG+AGG 0.551652 3_1:+38455125 Msa0357210:CDS
TTCCTAGCAACTATGTCTTG+TGG 0.553141 3_1:+38457578 Msa0357210:three_prime_UTR
TGGCGTGCATGGTTTGTTGA+AGG 0.557717 3_1:+38456357 Msa0357210:CDS
TCTACAGGGTGCTGGACATG+TGG 0.561147 3_1:+38457355 Msa0357210:intron
TTTATAATATGATCAAGAGA+TGG 0.561717 3_1:+38457402 Msa0357210:CDS
CTTAACATATGTGGCTGTGA+AGG 0.562221 3_1:+38457016 Msa0357210:CDS
AAACGATGAAAATGTGCGCA+AGG 0.564951 3_1:+38455694 Msa0357210:CDS
TCTTACTCAGAAACACAAGA+AGG 0.568210 3_1:+38454244 Msa0357210:CDS
TCATATTCAGGATTTACTAC+CGG 0.568587 3_1:+38454461 Msa0357210:CDS
TTGTGTAGATACATAGGAGT+GGG 0.572101 3_1:+38452695 Msa0357210:intron
TACATGATAAATGGCGTGCA+TGG 0.576655 3_1:+38456346 Msa0357210:CDS
GGCTCATACATTTAAGCCCA+AGG 0.580263 3_1:+38457376 Msa0357210:CDS
TGTGTATTGTGTAGATACAT+AGG 0.592376 3_1:+38452689 Msa0357210:intron
AGACCACTACTTAACATATG+TGG 0.592789 3_1:+38457007 Msa0357210:CDS
CAAGATTGTGTACTCAGTTG+TGG 0.595973 3_1:-38456300 None:intergenic
AGGAGTGGGAGAAGGAGCAA+AGG 0.597291 3_1:+38452709 Msa0357210:CDS
AATTGTACTTCGATTTGATG+GGG 0.600906 3_1:+38457444 Msa0357210:exon
TTATACAGGGCCATTAACAA+TGG 0.601640 3_1:+38454117 Msa0357210:intron
GGTTGTGTAGTGTGATGGGT+TGG 0.602148 3_1:+38450921 Msa0357210:intron
GAGAGCTTGGATGTTGGCGT+TGG 0.610183 3_1:-38455924 None:intergenic
AGATTATGAAGCTTATTCTG+AGG 0.610998 3_1:+38455353 Msa0357210:CDS
ATAAATGAGAGCTTGGATGT+TGG 0.612398 3_1:-38455930 None:intergenic
GGAAGTTCCCCATCAAAACC+AGG 0.614528 3_1:-38451022 None:intergenic
TTCCACAAGACATAGTTGCT+AGG 0.617252 3_1:-38457580 None:intergenic
CAGCCACATATGTTAAGTAG+TGG 0.621576 3_1:-38457010 None:intergenic
AGATACATAGGAGTGGGAGA+AGG 0.622687 3_1:+38452701 Msa0357210:intron
TAGCAGTGACACACTGTGGG+TGG 0.627959 3_1:+38454273 Msa0357210:CDS
ATTGTGTAGATACATAGGAG+TGG 0.639457 3_1:+38452694 Msa0357210:intron
GCTTATACAGGTCAACAGCA+GGG 0.641149 3_1:-38455062 None:intergenic
ATAGATATACCAGTAGGGAC+TGG 0.642117 3_1:+38454217 Msa0357210:CDS
TGTACATAGATATACCAGTA+GGG 0.651617 3_1:+38454212 Msa0357210:CDS
ATTATTGTGAGAAATGGTCA+AGG 0.654166 3_1:-38450676 None:intergenic
CTATAGCAGTGACACACTGT+GGG 0.654695 3_1:+38454270 Msa0357210:CDS
TTCCATTCAAGCTTGAAACA+GGG 0.655856 3_1:+38451041 Msa0357210:CDS
ATGTACATAGATATACCAGT+AGG 0.657583 3_1:+38454211 Msa0357210:CDS
ATTTAAATAGGGAACTAAAG+GGG 0.669063 3_1:+38455826 Msa0357210:intron
ACTATAGCAGTGACACACTG+TGG 0.674845 3_1:+38454269 Msa0357210:CDS
TCATTGGAGGAAAATTGTAA+GGG 0.680464 3_1:+38455288 Msa0357210:CDS
CAAGGCTCTTCATGTCAGAG+AGG 0.710069 3_1:+38455712 Msa0357210:CDS
ACAATGGATGACGATTACAG+TGG 0.739292 3_1:+38454133 Msa0357210:CDS
GCAGGTGTAGTGATACAGAG+AGG 0.739848 3_1:-38455491 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAATTTATTTTAAAT+AGG - chr3_1:38451704-38451723 None:intergenic 0.0%
!!! ATTTTTTTTTAAAAAAAAAT+GGG - chr3_1:38452400-38452419 None:intergenic 0.0%
!!! AATTTTTTTTTAAAAAAAAA+TGG - chr3_1:38452401-38452420 None:intergenic 0.0%
!!! ATTTTAATTAAAAACATGTT+TGG + chr3_1:38452189-38452208 Msa0357210:intron 10.0%
!!! TTAATTTGATGATTTAAATT+TGG + chr3_1:38454845-38454864 Msa0357210:intron 10.0%
!! TAAGATAATTAGTTATATAT+AGG - chr3_1:38455012-38455031 None:intergenic 10.0%
!! TAATTACAAGTTTATAATTA+GGG - chr3_1:38456746-38456765 None:intergenic 10.0%
!! TTAATTACAAGTTTATAATT+AGG - chr3_1:38456747-38456766 None:intergenic 10.0%
!! ATGAATTTCAATAAAAAAAA+AGG + chr3_1:38456845-38456864 Msa0357210:intron 10.0%
!!! ATTTTCTTTGATTTTCATTT+TGG + chr3_1:38450738-38450757 Msa0357210:intron 15.0%
!!! ATCTTTTGCATATAATAAAA+AGG + chr3_1:38451179-38451198 Msa0357210:intron 15.0%
!! TGAAAAGAATAAACAAAATA+AGG + chr3_1:38451237-38451256 Msa0357210:intron 15.0%
!! AATAAACAAAATAAGGATAA+GGG + chr3_1:38451244-38451263 Msa0357210:intron 15.0%
!!! AAATACTGCTATTAATTTTT+TGG + chr3_1:38451919-38451938 Msa0357210:intron 15.0%
!!! TCATTCTTACTTAAATTTTA+AGG - chr3_1:38452261-38452280 None:intergenic 15.0%
!! GATTAATATCATTATTACAT+TGG - chr3_1:38452322-38452341 None:intergenic 15.0%
!!! TACATATTCTTTTTTACAAA+AGG + chr3_1:38454300-38454319 Msa0357210:CDS 15.0%
!! AATGATTATAAGATTCATAA+TGG - chr3_1:38455159-38455178 None:intergenic 15.0%
!! TTCAATAATCCAATTTAAAT+AGG + chr3_1:38455814-38455833 Msa0357210:intron 15.0%
!! TCAATAATCCAATTTAAATA+GGG + chr3_1:38455815-38455834 Msa0357210:intron 15.0%
!! TAACATTATCAAAGAAAAAA+AGG - chr3_1:38456216-38456235 None:intergenic 15.0%
!! AAATTAAAAACAAAATTACC+CGG - chr3_1:38456391-38456410 None:intergenic 15.0%
!!! TGAATTTTATAATCCAAATA+GGG - chr3_1:38457157-38457176 None:intergenic 15.0%
!!! TTGAATTTTATAATCCAAAT+AGG - chr3_1:38457158-38457177 None:intergenic 15.0%
!!! AAAATAAAAGTGCCAATATA+AGG - chr3_1:38450636-38450655 None:intergenic 20.0%
!!! AACCTAATTTTTTTTTCTTC+CGG + chr3_1:38450900-38450919 Msa0357210:intron 20.0%
!! GAATAAACAAAATAAGGATA+AGG + chr3_1:38451243-38451262 Msa0357210:intron 20.0%
!!! TTGTTTTTCTCATTTCTTAT+TGG - chr3_1:38451563-38451582 None:intergenic 20.0%
!! AATAAGAAATGAGAAAAACA+AGG + chr3_1:38451562-38451581 Msa0357210:intron 20.0%
!! AACTTTATCTTCAATATGAT+TGG - chr3_1:38451760-38451779 None:intergenic 20.0%
!!! TCTCTAAAAAACTCTAATTT+GGG + chr3_1:38452352-38452371 Msa0357210:intron 20.0%
!!! TTTAACTTATTAGCCAATTA+TGG + chr3_1:38452665-38452684 Msa0357210:intron 20.0%
!! AGTAAAATTGGATCAATAAA+GGG - chr3_1:38452773-38452792 None:intergenic 20.0%
!! AAGTAAAATTGGATCAATAA+AGG - chr3_1:38452774-38452793 None:intergenic 20.0%
!!! TTATTGATCCAATTTTACTT+TGG + chr3_1:38452774-38452793 Msa0357210:CDS 20.0%
!!! TAAAGTTGTTTTATTGTTCT+AGG + chr3_1:38452857-38452876 Msa0357210:intron 20.0%
!! GAATGAGAAAAATATACATT+TGG - chr3_1:38452908-38452927 None:intergenic 20.0%
!! TGACTTATCATAGTATAAAA+AGG - chr3_1:38453004-38453023 None:intergenic 20.0%
!! TTATACTATGATAAGTCATT+AGG + chr3_1:38453006-38453025 Msa0357210:intron 20.0%
!! AACAAAAATTGTTATAGTCA+AGG - chr3_1:38453894-38453913 None:intergenic 20.0%
!!! TACACTTCACTTATAATTTT+GGG - chr3_1:38454059-38454078 None:intergenic 20.0%
!! TTTATGATTTATCAATGCAA+AGG + chr3_1:38454347-38454366 Msa0357210:intron 20.0%
!!! ATCAAATTAACATTTGTTAC+TGG - chr3_1:38454835-38454854 None:intergenic 20.0%
!!! ATGATAATAACTCTAAAAGA+CGG - chr3_1:38455654-38455673 None:intergenic 20.0%
!! TTAGAGTTATTATCATATTC+TGG + chr3_1:38455658-38455677 Msa0357210:intron 20.0%
!! AATTTAAATAGGGAACTAAA+GGG + chr3_1:38455825-38455844 Msa0357210:intron 20.0%
!!! GTACCATTTTATTAATTACA+TGG + chr3_1:38456935-38456954 Msa0357210:intron 20.0%
!!! AAAAAGTAGAGCTTTTTTAA+AGG + chr3_1:38457177-38457196 Msa0357210:intron 20.0%
!!! ATTATAAATCTGAAATCCAT+AGG + chr3_1:38457248-38457267 Msa0357210:intron 20.0%
!!! TTATAAATCTGAAATCCATA+GGG + chr3_1:38457249-38457268 Msa0357210:intron 20.0%
!!! ATGACATTGCTATTAAATTT+TGG - chr3_1:38457310-38457329 None:intergenic 20.0%
!! AAATTTAATAGCAATGTCAT+TGG + chr3_1:38457310-38457329 Msa0357210:intron 20.0%
!! ATCATATTATAAACTTCCTT+GGG - chr3_1:38457395-38457414 None:intergenic 20.0%
!! TTTATAATATGATCAAGAGA+TGG + chr3_1:38457402-38457421 Msa0357210:CDS 20.0%
! AGACAATTGAATTGCATTAT+TGG - chr3_1:38450554-38450573 None:intergenic 25.0%
! TTCTGAATTATTGTGAGAAA+TGG - chr3_1:38450685-38450704 None:intergenic 25.0%
! AATAATTCAGAACCATTATC+TGG + chr3_1:38450693-38450712 Msa0357210:five_prime_UTR 25.0%
! AACCGGAAGAAAAAAAAATT+AGG - chr3_1:38450905-38450924 None:intergenic 25.0%
! AAGATGCTTACATATATGAA+CGG - chr3_1:38451164-38451183 None:intergenic 25.0%
!!! AAATAAGGATAAGGGTATTT+AGG + chr3_1:38451252-38451271 Msa0357210:intron 25.0%
!!! AATAAGGATAAGGGTATTTA+GGG + chr3_1:38451253-38451272 Msa0357210:intron 25.0%
! GTTAGGTATGCTAATAAATA+AGG - chr3_1:38451380-38451399 None:intergenic 25.0%
! ATTTCTCTTAAGCCAAATAT+GGG - chr3_1:38451434-38451453 None:intergenic 25.0%
!!! AACCACTTTTTAACAACTTT+TGG + chr3_1:38451465-38451484 Msa0357210:intron 25.0%
! AAAACAATGGAGAAAGAAAA+AGG - chr3_1:38451537-38451556 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr3_1:38451550-38451569 None:intergenic 25.0%
! TTCAATAAGATTACTTTCGA+TGG + chr3_1:38451672-38451691 Msa0357210:intron 25.0%
! GCTATATTTCTTAGATGTTA+AGG + chr3_1:38451879-38451898 Msa0357210:intron 25.0%
!!! GTTTTAGTTAAACATATGTG+TGG + chr3_1:38452134-38452153 Msa0357210:intron 25.0%
!! CTCTCTAAAAAACTCTAATT+TGG + chr3_1:38452351-38452370 Msa0357210:intron 25.0%
!! CTCTAAAAAACTCTAATTTG+GGG + chr3_1:38452353-38452372 Msa0357210:intron 25.0%
! TCTAAAAAACTCTAATTTGG+GGG + chr3_1:38452354-38452373 Msa0357210:intron 25.0%
!! GCAAATGTTTTACTATTTTG+TGG + chr3_1:38452733-38452752 Msa0357210:CDS 25.0%
! ATCAATAAAGGGATTTCTTT+GGG - chr3_1:38452762-38452781 None:intergenic 25.0%
! AATTGTTATAGTCAAGGTAA+GGG - chr3_1:38453888-38453907 None:intergenic 25.0%
! AAATTGTTATAGTCAAGGTA+AGG - chr3_1:38453889-38453908 None:intergenic 25.0%
!!! TCAGACTTTACTTATTTTTC+CGG + chr3_1:38453913-38453932 Msa0357210:intron 25.0%
!! TTGATATTTTTCACCTAAAC+CGG - chr3_1:38454013-38454032 None:intergenic 25.0%
!! CTACACTTCACTTATAATTT+TGG - chr3_1:38454060-38454079 None:intergenic 25.0%
! ATGAATTGCAATGTTTATAC+AGG + chr3_1:38454103-38454122 Msa0357210:intron 25.0%
! TGAATTGCAATGTTTATACA+GGG + chr3_1:38454104-38454123 Msa0357210:intron 25.0%
! TATGGATTCAATTTAAGCTT+TGG - chr3_1:38454166-38454185 None:intergenic 25.0%
! AAGCTTAAATTGAATCCATA+TGG + chr3_1:38454166-38454185 Msa0357210:CDS 25.0%
! TTAAATTGAATCCATATGGT+TGG + chr3_1:38454170-38454189 Msa0357210:CDS 25.0%
!!! TCATATACTTTTTGAACAAC+AGG - chr3_1:38454488-38454507 None:intergenic 25.0%
!! GTTGTTCAAAAAGTATATGA+AGG + chr3_1:38454488-38454507 Msa0357210:CDS 25.0%
! AAACATATACTAGTCAATAC+AGG - chr3_1:38454612-38454631 None:intergenic 25.0%
! AAGTAAAAAAAACGTGTGTT+TGG + chr3_1:38454647-38454666 Msa0357210:intron 25.0%
! TTACTGGAAACTTAATTAGT+AGG - chr3_1:38454819-38454838 None:intergenic 25.0%
! CTTACTTTGATGTTTATATG+TGG - chr3_1:38454935-38454954 None:intergenic 25.0%
! ATTATCTTATTCTTATCGTC+AGG + chr3_1:38455023-38455042 Msa0357210:intron 25.0%
! TTATCTTATTCTTATCGTCA+GGG + chr3_1:38455024-38455043 Msa0357210:intron 25.0%
!! CTTTTGGTATAAGATTCATA+TGG - chr3_1:38455116-38455135 None:intergenic 25.0%
! AAATATAATGTTGCAGTCAT+TGG + chr3_1:38455272-38455291 Msa0357210:intron 25.0%
!! TTCAAGATGATCAAGAATTT+TGG + chr3_1:38455540-38455559 Msa0357210:CDS 25.0%
! TAATCAAGTTAGCACAATTT+GGG - chr3_1:38455621-38455640 None:intergenic 25.0%
! TTAATCAAGTTAGCACAATT+TGG - chr3_1:38455622-38455641 None:intergenic 25.0%
! TTGAAATTATCATGAAGCTA+AGG + chr3_1:38455785-38455804 Msa0357210:intron 25.0%
!! CTTTAGTTCCCTATTTAAAT+TGG - chr3_1:38455826-38455845 None:intergenic 25.0%
! CAATTTAAATAGGGAACTAA+AGG + chr3_1:38455824-38455843 Msa0357210:intron 25.0%
! ATTTAAATAGGGAACTAAAG+GGG + chr3_1:38455826-38455845 Msa0357210:intron 25.0%
!!! GACACAAACACATTTTAATT+TGG + chr3_1:38456180-38456199 Msa0357210:intron 25.0%
! ATTATGTCACACTCATTATT+TGG + chr3_1:38456241-38456260 Msa0357210:intron 25.0%
! TTATGTCACACTCATTATTT+GGG + chr3_1:38456242-38456261 Msa0357210:intron 25.0%
! TATACTCAAACTACAACAAT+TGG - chr3_1:38456432-38456451 None:intergenic 25.0%
!!! ATTTTAATATGCTATAGTCG+AGG - chr3_1:38456669-38456688 None:intergenic 25.0%
!!! TTTTTCTTTTGGCTCTTTAT+TGG + chr3_1:38456888-38456907 Msa0357210:intron 25.0%
! GGACCATGTAATTAATAAAA+TGG - chr3_1:38456941-38456960 None:intergenic 25.0%
!!! GTGTTTTAACGTATTTTGAA+GGG + chr3_1:38457199-38457218 Msa0357210:intron 25.0%
! GATCATATTATAAACTTCCT+TGG - chr3_1:38457396-38457415 None:intergenic 25.0%
!! TAATTGTACTTCGATTTGAT+GGG + chr3_1:38457443-38457462 Msa0357210:exon 25.0%
! CATAGGCTTAAATGAATATA+TGG - chr3_1:38457482-38457501 None:intergenic 25.0%
! TGCATTGAAATTTTGGACAA+AGG - chr3_1:38450600-38450619 None:intergenic 30.0%
! ATTCCTGTGCATTGAAATTT+TGG - chr3_1:38450607-38450626 None:intergenic 30.0%
AGGAATATGCTTCCTTATAT+TGG + chr3_1:38450621-38450640 Msa0357210:five_prime_UTR 30.0%
ATTATTGTGAGAAATGGTCA+AGG - chr3_1:38450679-38450698 None:intergenic 30.0%
TGAATAAACTCACCAGATAA+TGG - chr3_1:38450708-38450727 None:intergenic 30.0%
!!! TCATTTTGGTGTTAATCATC+CGG + chr3_1:38450752-38450771 Msa0357210:intron 30.0%
! GGATAAGAATTCTTTTACTC+TGG + chr3_1:38450831-38450850 Msa0357210:intron 30.0%
GTTAATGAACTCTACCAAAT+AGG - chr3_1:38450874-38450893 None:intergenic 30.0%
!! ATAAGGATAAGGGTATTTAG+GGG + chr3_1:38451254-38451273 Msa0357210:intron 30.0%
TAGATCGAATTTCTCATGTT+AGG - chr3_1:38451397-38451416 None:intergenic 30.0%
CATTTCTCTTAAGCCAAATA+TGG - chr3_1:38451435-38451454 None:intergenic 30.0%
GTCCAAAAGTTGTTAAAAAG+TGG - chr3_1:38451470-38451489 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr3_1:38451588-38451607 Msa0357210:intron 30.0%
GTTAGTAAGATTACTTTCCA+TGG + chr3_1:38451728-38451747 Msa0357210:intron 30.0%
!! AATATGATTGGTTTCATCCA+TGG - chr3_1:38451748-38451767 None:intergenic 30.0%
ACTCAAGATATGAAAACACA+GGG + chr3_1:38451850-38451869 Msa0357210:intron 30.0%
! ATCCAGAAATCATAACTTGT+GGG - chr3_1:38452071-38452090 None:intergenic 30.0%
TGTGTATTGTGTAGATACAT+AGG + chr3_1:38452689-38452708 Msa0357210:intron 30.0%
GATCAATAAAGGGATTTCTT+TGG - chr3_1:38452763-38452782 None:intergenic 30.0%
!!! TCAGCATTCTTTTTCGAAAA+TGG + chr3_1:38452827-38452846 Msa0357210:CDS 30.0%
! TTGTTTTCTTTGCCAATCAA+AGG - chr3_1:38452938-38452957 None:intergenic 30.0%
! TGTGAGAGAATTCTTTGAAA+AGG + chr3_1:38452958-38452977 Msa0357210:intron 30.0%
! GAATTCTTTGAAAAGGACTA+AGG + chr3_1:38452965-38452984 Msa0357210:intron 30.0%
CAATGAAAACACCAATTGTT+AGG + chr3_1:38453628-38453647 Msa0357210:intron 30.0%
!!! ATCTAATGGACTAGTCTTTT+GGG - chr3_1:38453679-38453698 None:intergenic 30.0%
! ACACTTTTATCTACTCGATA+TGG + chr3_1:38453731-38453750 Msa0357210:intron 30.0%
! CACTTTTATCTACTCGATAT+GGG + chr3_1:38453732-38453751 Msa0357210:intron 30.0%
TCCTAACAAGATGTCAAAAT+AGG + chr3_1:38453757-38453776 Msa0357210:intron 30.0%
CCTAACAAGATGTCAAAATA+GGG + chr3_1:38453758-38453777 Msa0357210:intron 30.0%
TCACATATACTCATGTTAGT+TGG + chr3_1:38453812-38453831 Msa0357210:intron 30.0%
!!! TGAGTGAGTTTTTTAAGACT+TGG - chr3_1:38453976-38453995 None:intergenic 30.0%
! ACTCAACAAGAATTTTGTAC+CGG + chr3_1:38453991-38454010 Msa0357210:intron 30.0%
TAATCGTCATCCATTGTTAA+TGG - chr3_1:38454130-38454149 None:intergenic 30.0%
!! GATTCAATTTAAGCTTTGGA+AGG - chr3_1:38454162-38454181 None:intergenic 30.0%
ATGTACATAGATATACCAGT+AGG + chr3_1:38454211-38454230 Msa0357210:CDS 30.0%
TGTACATAGATATACCAGTA+GGG + chr3_1:38454212-38454231 Msa0357210:CDS 30.0%
ATATTCTACTTTCAATGCAG+TGG + chr3_1:38454387-38454406 Msa0357210:intron 30.0%
! AATGGATTTGAGCTAAACTT+TGG - chr3_1:38454425-38454444 None:intergenic 30.0%
! AGCTCAAATCCATTTTACAT+AGG + chr3_1:38454431-38454450 Msa0357210:CDS 30.0%
! TCAAATCCATTTTACATAGG+TGG + chr3_1:38454434-38454453 Msa0357210:CDS 30.0%
TCATATTCAGGATTTACTAC+CGG + chr3_1:38454461-38454480 Msa0357210:CDS 30.0%
TATGAAGGTAAACACTAACT+AGG + chr3_1:38454503-38454522 Msa0357210:intron 30.0%
!! GGACTTCTAAAATCTTGTTT+CGG - chr3_1:38454560-38454579 None:intergenic 30.0%
TCACGTTTATATGCTTATAC+AGG - chr3_1:38455077-38455096 None:intergenic 30.0%
TATACCAAAAGAACTCTATG+AGG + chr3_1:38455125-38455144 Msa0357210:CDS 30.0%
! TAATTTGCATCTAGCTATGA+AGG + chr3_1:38455215-38455234 Msa0357210:intron 30.0%
TCATTGGAGGAAAATTGTAA+GGG + chr3_1:38455288-38455307 Msa0357210:CDS 30.0%
AGATTATGAAGCTTATTCTG+AGG + chr3_1:38455353-38455372 Msa0357210:CDS 30.0%
AGCATTCATAGTAATGCATT+TGG + chr3_1:38455392-38455411 Msa0357210:intron 30.0%
GCATTCATAGTAATGCATTT+GGG + chr3_1:38455393-38455412 Msa0357210:intron 30.0%
AATTCTTGATCATCTTGAAC+AGG - chr3_1:38455539-38455558 None:intergenic 30.0%
ACATGAGCATACATGATAAA+TGG + chr3_1:38456337-38456356 Msa0357210:CDS 30.0%
AAAACATTGATGTGTCAAGT+AGG + chr3_1:38456597-38456616 Msa0357210:intron 30.0%
AAACATTGATGTGTCAAGTA+GGG + chr3_1:38456598-38456617 Msa0357210:intron 30.0%
!!! TGGTTTTGTTAGATTGAGTT+AGG - chr3_1:38456702-38456721 None:intergenic 30.0%
CAAATCTTCAACTTACAAGT+TGG - chr3_1:38456722-38456741 None:intergenic 30.0%
!!! TTTTGGCTCTTTATTGGATT+TGG + chr3_1:38456894-38456913 Msa0357210:intron 30.0%
CTTTATTGGATTTGGATGAA+AGG + chr3_1:38456902-38456921 Msa0357210:intron 30.0%
ATCTGGGTGAAATATTCAAA+AGG - chr3_1:38456962-38456981 None:intergenic 30.0%
TTGTAGATTTCTGTGAATCT+GGG - chr3_1:38456978-38456997 None:intergenic 30.0%
!!! GGTGTTTTAACGTATTTTGA+AGG + chr3_1:38457198-38457217 Msa0357210:intron 30.0%
!! TAACGTATTTTGAAGGGTTT+TGG + chr3_1:38457205-38457224 Msa0357210:intron 30.0%
TAATTCCATTGTCATTCTAC+AGG + chr3_1:38457340-38457359 Msa0357210:intron 30.0%
AATTCCATTGTCATTCTACA+GGG + chr3_1:38457341-38457360 Msa0357210:intron 30.0%
! CTAATTGTACTTCGATTTGA+TGG + chr3_1:38457442-38457461 Msa0357210:exon 30.0%
! AATTGTACTTCGATTTGATG+GGG + chr3_1:38457444-38457463 Msa0357210:exon 30.0%
TAAAGAATCCACAAAGACAT+AGG - chr3_1:38457499-38457518 None:intergenic 30.0%
CTTTATTCGTTTACCAATGA+TGG + chr3_1:38457514-38457533 Msa0357210:three_prime_UTR 30.0%
CAATTACCAATTTCCATCAT+TGG - chr3_1:38457530-38457549 None:intergenic 30.0%
!! GAAATTTTGGACAAAGGTAC+TGG - chr3_1:38450594-38450613 None:intergenic 35.0%
TGTCCAAAATTTCAATGCAC+AGG + chr3_1:38450601-38450620 Msa0357210:five_prime_UTR 35.0%
! CGAATTCAAGTTCTCCTATT+TGG + chr3_1:38450857-38450876 Msa0357210:intron 35.0%
TTTAATGCTTCTGCCATTCA+TGG + chr3_1:38450970-38450989 Msa0357210:CDS 35.0%
TCTGCCATTCATGGTTTATT+CGG + chr3_1:38450979-38450998 Msa0357210:CDS 35.0%
TCTATTGTCAAGAAACTTCC+TGG + chr3_1:38451004-38451023 Msa0357210:CDS 35.0%
!!! AAGAAACTTCCTGGTTTTGA+TGG + chr3_1:38451013-38451032 Msa0357210:CDS 35.0%
!!! AGAAACTTCCTGGTTTTGAT+GGG + chr3_1:38451014-38451033 Msa0357210:CDS 35.0%
TTCCATTCAAGCTTGAAACA+GGG + chr3_1:38451041-38451060 Msa0357210:CDS 35.0%
ATGCTTACATATATGAACGG+AGG - chr3_1:38451161-38451180 None:intergenic 35.0%
!!! CAATCATTGCTGTTTTGTTG+TGG + chr3_1:38451204-38451223 Msa0357210:intron 35.0%
TCTGTGAAGAAGGAAAAAAG+TGG + chr3_1:38451326-38451345 Msa0357210:intron 35.0%
TGAAGAAGGAAAAAAGTGGT+GGG + chr3_1:38451330-38451349 Msa0357210:intron 35.0%
AGAAAGAAAAAGGAAGAGAG+AGG - chr3_1:38451527-38451546 None:intergenic 35.0%
GAGCACTCTAACATTATGTT+TGG - chr3_1:38451644-38451663 None:intergenic 35.0%
CACTCAAGATATGAAAACAC+AGG + chr3_1:38451849-38451868 Msa0357210:intron 35.0%
ATCCCACAAGTTATGATTTC+TGG + chr3_1:38452066-38452085 Msa0357210:intron 35.0%
GATCCAGAAATCATAACTTG+TGG - chr3_1:38452072-38452091 None:intergenic 35.0%
!! AAACATGTTTGGTTCTCAAG+AGG + chr3_1:38452200-38452219 Msa0357210:intron 35.0%
! CTTTGTTATGTCCATTTGGT+CGG - chr3_1:38452457-38452476 None:intergenic 35.0%
! ATGCCTTTGTTATGTCCATT+TGG - chr3_1:38452461-38452480 None:intergenic 35.0%
TGAAAGATGTTCCACGATTA+AGG + chr3_1:38452539-38452558 Msa0357210:intron 35.0%
GAAAGATGTTCCACGATTAA+GGG + chr3_1:38452540-38452559 Msa0357210:intron 35.0%
AAAGATGTTCCACGATTAAG+GGG + chr3_1:38452541-38452560 Msa0357210:intron 35.0%
ACACAATACACAGCCATAAT+TGG - chr3_1:38452681-38452700 None:intergenic 35.0%
ATTGTGTAGATACATAGGAG+TGG + chr3_1:38452694-38452713 Msa0357210:intron 35.0%
TTGTGTAGATACATAGGAGT+GGG + chr3_1:38452695-38452714 Msa0357210:intron 35.0%
CCAACGAACCAAAGTAAAAT+TGG - chr3_1:38452785-38452804 None:intergenic 35.0%
!! CCAATTTTACTTTGGTTCGT+TGG + chr3_1:38452782-38452801 Msa0357210:CDS 35.0%
!! ATTTTACTTTGGTTCGTTGG+AGG + chr3_1:38452785-38452804 Msa0357210:CDS 35.0%
! GTTCTAGGTTGTGATTAAGA+AGG + chr3_1:38452872-38452891 Msa0357210:intron 35.0%
CATTCACATGTTCCTTTGAT+TGG + chr3_1:38452923-38452942 Msa0357210:intron 35.0%
CCAATAAAGTGAATGTCGTA+CGG - chr3_1:38453111-38453130 None:intergenic 35.0%
TACCTGGATTAAGTGATAGT+GGG - chr3_1:38453140-38453159 None:intergenic 35.0%
TTACCTGGATTAAGTGATAG+TGG - chr3_1:38453141-38453160 None:intergenic 35.0%
AGAAAGGACTACTTATTACC+TGG - chr3_1:38453156-38453175 None:intergenic 35.0%
TGTTGTCCAACTCTCAATAT+TGG + chr3_1:38453175-38453194 Msa0357210:intron 35.0%
TCATAGCCAATATTGAGAGT+TGG - chr3_1:38453184-38453203 None:intergenic 35.0%
GGCTATGATGATAAGTCATT+AGG + chr3_1:38453196-38453215 Msa0357210:intron 35.0%
CCAATAAAGTGAATGTCGTA+CGG - chr3_1:38453111-38453130 None:intergenic 35.0%
TACCTGGATTAAGTGATAGT+GGG - chr3_1:38453140-38453159 None:intergenic 35.0%
TTACCTGGATTAAGTGATAG+TGG - chr3_1:38453141-38453160 None:intergenic 35.0%
TGTTGTCCAACTCTCAATAT+TGG + chr3_1:38453175-38453194 Msa0357210:intron 35.0%
TCATAGCCAATATTGAGAGT+TGG - chr3_1:38453184-38453203 None:intergenic 35.0%
GGCTATGATGATAAGTCATT+AGG + chr3_1:38453196-38453215 Msa0357210:intron 35.0%
CAGTACGACATTCACTTTAT+TGG + chr3_1:38453544-38453563 Msa0357210:intron 35.0%
TACCTGGATTAAGTGATAGT+GGG - chr3_1:38453140-38453159 None:intergenic 35.0%
TTACCTGGATTAAGTGATAG+TGG - chr3_1:38453141-38453160 None:intergenic 35.0%
! GTGTTTTCATTGAGAGTAGT+TGG - chr3_1:38453620-38453639 None:intergenic 35.0%
TGGGATTAAGTCCTAACAAT+TGG - chr3_1:38453642-38453661 None:intergenic 35.0%
!!! CATCTAATGGACTAGTCTTT+TGG - chr3_1:38453680-38453699 None:intergenic 35.0%
!!! CCCTATTTTGACATCTTGTT+AGG - chr3_1:38453761-38453780 None:intergenic 35.0%
AATGGAAACAACTCTAGTCA+TGG - chr3_1:38453856-38453875 None:intergenic 35.0%
! AGGTAAGGGTATATGTCAAA+TGG - chr3_1:38453874-38453893 None:intergenic 35.0%
!!! TTTTTAAGACTTGGTTCCCA+AGG - chr3_1:38453967-38453986 None:intergenic 35.0%
!!! CAAGAATTTTGTACCGGTTT+AGG + chr3_1:38453997-38454016 Msa0357210:intron 35.0%
TTATACAGGGCCATTAACAA+TGG + chr3_1:38454117-38454136 Msa0357210:intron 35.0%
AACATATGTGTCCAACCATA+TGG - chr3_1:38454184-38454203 None:intergenic 35.0%
TCTTACTCAGAAACACAAGA+AGG + chr3_1:38454244-38454263 Msa0357210:CDS 35.0%
! AATCCATTTTACATAGGTGG+TGG + chr3_1:38454437-38454456 Msa0357210:CDS 35.0%
!! TACTTTTTGAACAACAGGAC+CGG - chr3_1:38454483-38454502 None:intergenic 35.0%
ACTAGGCGAAAATGCAATAT+CGG + chr3_1:38454520-38454539 Msa0357210:intron 35.0%
AGTCCTGAAAGTTGTGAAAT+TGG + chr3_1:38454575-38454594 Msa0357210:intron 35.0%
GTCCTGAAAGTTGTGAAATT+GGG + chr3_1:38454576-38454595 Msa0357210:intron 35.0%
CTAGTATATGTTTGCTCTAG+TGG + chr3_1:38454619-38454638 Msa0357210:intron 35.0%
!! GTTTTTGAAAAGCTAGCAGT+TGG - chr3_1:38454682-38454701 None:intergenic 35.0%
!!! TGCTAGCTTTTCAAAAACCA+CGG + chr3_1:38454684-38454703 Msa0357210:intron 35.0%
!!! TTAGACTTTTAGAGCGTGTT+TGG - chr3_1:38454753-38454772 None:intergenic 35.0%
TGAATTCTTGCTTGAATTGC+AGG + chr3_1:38454890-38454909 Msa0357210:intron 35.0%
! GTAACCTCATAGAGTTCTTT+TGG - chr3_1:38455132-38455151 None:intergenic 35.0%
TATAATGTTGCAGTCATTGG+AGG + chr3_1:38455275-38455294 Msa0357210:intron 35.0%
GTCATTGGAGGAAAATTGTA+AGG + chr3_1:38455287-38455306 Msa0357210:intron 35.0%
! GAGACACACTTTGTGTTATT+TGG - chr3_1:38455333-38455352 None:intergenic 35.0%
ATCGAACTAGCTGCAAAAAA+AGG - chr3_1:38455445-38455464 None:intergenic 35.0%
ATCATATTCTGGTCGACATA+TGG + chr3_1:38455669-38455688 Msa0357210:CDS 35.0%
TCATATTCTGGTCGACATAT+GGG + chr3_1:38455670-38455689 Msa0357210:CDS 35.0%
! TTTGAGATGCAACAAGACTT+TGG + chr3_1:38455853-38455872 Msa0357210:CDS 35.0%
ATAAATGAGAGCTTGGATGT+TGG - chr3_1:38455933-38455952 None:intergenic 35.0%
AACATCCAAGCTCTCATTTA+TGG + chr3_1:38455932-38455951 Msa0357210:CDS 35.0%
ACATCCAAGCTCTCATTTAT+GGG + chr3_1:38455933-38455952 Msa0357210:CDS 35.0%
! CAGTGATATATAGGTTTGCT+TGG - chr3_1:38455983-38456002 None:intergenic 35.0%
TTGAAGCAGCAGTGATATAT+AGG - chr3_1:38455992-38456011 None:intergenic 35.0%
AACATTGATGTGTCAAGTAG+GGG + chr3_1:38456599-38456618 Msa0357210:intron 35.0%
TTGCTCAAGTTAAAGGACAA+TGG - chr3_1:38456782-38456801 None:intergenic 35.0%
CTTGTAGATTTCTGTGAATC+TGG - chr3_1:38456979-38456998 None:intergenic 35.0%
AGACCACTACTTAACATATG+TGG + chr3_1:38457007-38457026 Msa0357210:CDS 35.0%
CACACGAGAAACTAATAGAA+TGG + chr3_1:38457272-38457291 Msa0357210:intron 35.0%
CATTTAAGCCTATGTCTTTG+TGG + chr3_1:38457488-38457507 Msa0357210:three_prime_UTR 35.0%
! CGTTTACCAATGATGGAAAT+TGG + chr3_1:38457521-38457540 Msa0357210:three_prime_UTR 35.0%
CGGTTATCGAGATTTATGTC+TGG + chr3_1:38450793-38450812 Msa0357210:intron 40.0%
! GTCTGGAGTTGAATGAAGTT+TGG + chr3_1:38450810-38450829 Msa0357210:intron 40.0%
AGATGCAGCTGTATTGTGTT+AGG + chr3_1:38450944-38450963 Msa0357210:CDS 40.0%
CTGCCATTCATGGTTTATTC+GGG + chr3_1:38450980-38450999 Msa0357210:CDS 40.0%
GAACCCGAATAAACCATGAA+TGG - chr3_1:38450986-38451005 None:intergenic 40.0%
!!! GAAACTTCCTGGTTTTGATG+GGG + chr3_1:38451015-38451034 Msa0357210:CDS 40.0%
CTTCCATTCAAGCTTGAAAC+AGG + chr3_1:38451040-38451059 Msa0357210:CDS 40.0%
!!! CATTGCTGTTTTGTTGTGGT+TGG + chr3_1:38451208-38451227 Msa0357210:intron 40.0%
TCTTCGCATATCTGTGAAGA+AGG + chr3_1:38451316-38451335 Msa0357210:intron 40.0%
GTGAAGAAGGAAAAAAGTGG+TGG + chr3_1:38451329-38451348 Msa0357210:intron 40.0%
AAGAGAGATGAGATTGTGGT+GGG - chr3_1:38451357-38451376 None:intergenic 40.0%
AAGGAAGAGAGATGAGATTG+TGG - chr3_1:38451361-38451380 None:intergenic 40.0%
TCTCCAACTTCTCCCATATT+TGG + chr3_1:38451419-38451438 Msa0357210:intron 40.0%
AAGCCAAATATGGGAGAAGT+TGG - chr3_1:38451425-38451444 None:intergenic 40.0%
GTGTGGTTCAAGAAAGAGAA+AGG + chr3_1:38452151-38452170 Msa0357210:intron 40.0%
!! ATGTTTGGTTCTCAAGAGGA+GGG + chr3_1:38452204-38452223 Msa0357210:intron 40.0%
CGACCAAATGGACATAACAA+AGG + chr3_1:38452455-38452474 Msa0357210:intron 40.0%
AAGATGTTCCACGATTAAGG+GGG + chr3_1:38452542-38452561 Msa0357210:intron 40.0%
CCGTACGACATTCACTTTAT+TGG + chr3_1:38453108-38453127 Msa0357210:intron 40.0%
TTGAGAGTTGGACAACAGAA+AGG - chr3_1:38453172-38453191 None:intergenic 40.0%
TACGTCTTCATGGCAATGTT+AGG - chr3_1:38453281-38453300 None:intergenic 40.0%
TTAGGAGTTCTACGTCTTCA+TGG - chr3_1:38453291-38453310 None:intergenic 40.0%
CCGTACGACATTCACTTTAT+TGG + chr3_1:38453108-38453127 Msa0357210:intron 40.0%
AGAGAGGACTACTTATTACC+TGG - chr3_1:38453374-38453393 None:intergenic 40.0%
TACGTCTTCATGGCAATGTT+AGG - chr3_1:38453281-38453300 None:intergenic 40.0%
TTAGGAGTTCTACGTCTTCA+TGG - chr3_1:38453291-38453310 None:intergenic 40.0%
AGAAAGGACTACGTATTACC+TGG - chr3_1:38453592-38453611 None:intergenic 40.0%
AGAGTAGTTGGACAACAGAA+AGG - chr3_1:38453608-38453627 None:intergenic 40.0%
!!! ATGGACTAGTCTTTTGGGTT+AGG - chr3_1:38453674-38453693 None:intergenic 40.0%
CATGAGACTCTCTCATCTAA+TGG - chr3_1:38453693-38453712 None:intergenic 40.0%
GGAAAAAGGACCTGGTAATT+TGG - chr3_1:38453946-38453965 None:intergenic 40.0%
! ATTACCAGGTCCTTTTTCCT+TGG + chr3_1:38453947-38453966 Msa0357210:intron 40.0%
! TTACCAGGTCCTTTTTCCTT+GGG + chr3_1:38453948-38453967 Msa0357210:intron 40.0%
ACAATGGATGACGATTACAG+TGG + chr3_1:38454133-38454152 Msa0357210:CDS 40.0%
ATAGATATACCAGTAGGGAC+TGG + chr3_1:38454217-38454236 Msa0357210:CDS 40.0%
TAAGAAAAACCAGTCCCTAC+TGG - chr3_1:38454229-38454248 None:intergenic 40.0%
CTCCCAATTTCACAACTTTC+AGG - chr3_1:38454581-38454600 None:intergenic 40.0%
! AAACCACGGTAAAAGTGCAT+AGG + chr3_1:38454698-38454717 Msa0357210:intron 40.0%
! AACCACGGTAAAAGTGCATA+GGG + chr3_1:38454699-38454718 Msa0357210:intron 40.0%
! TTAGAGCGTGTTTGGTTTAG+CGG - chr3_1:38454745-38454764 None:intergenic 40.0%
! CGAATTATCTGGTTTACAGC+AGG - chr3_1:38455512-38455531 None:intergenic 40.0%
GAACAGGTTGTCGAATTATC+TGG - chr3_1:38455523-38455542 None:intergenic 40.0%
AAACGATGAAAATGTGCGCA+AGG + chr3_1:38455694-38455713 Msa0357210:CDS 40.0%
GCGATAATATTCTACAGCAC+TGG - chr3_1:38455897-38455916 None:intergenic 40.0%
GTTACCCATAAATGAGAGCT+TGG - chr3_1:38455940-38455959 None:intergenic 40.0%
! TACAGGTGTTAGTTTCGTGT+TGG - chr3_1:38456063-38456082 None:intergenic 40.0%
! GTGTTAGTTTCGTGTTCTAC+AGG - chr3_1:38456080-38456099 None:intergenic 40.0%
CAAGATTGTGTACTCAGTTG+TGG - chr3_1:38456303-38456322 None:intergenic 40.0%
CACAACTGAGTACACAATCT+TGG + chr3_1:38456301-38456320 Msa0357210:CDS 40.0%
TACATGATAAATGGCGTGCA+TGG + chr3_1:38456346-38456365 Msa0357210:CDS 40.0%
TTTGTTGAAGGTCAAGTAGC+CGG + chr3_1:38456369-38456388 Msa0357210:CDS 40.0%
GACAATATCTCGTACACTTG+TGG + chr3_1:38456564-38456583 Msa0357210:intron 40.0%
TATGCTATAGTCGAGGCTAA+GGG - chr3_1:38456662-38456681 None:intergenic 40.0%
ATATGCTATAGTCGAGGCTA+AGG - chr3_1:38456663-38456682 None:intergenic 40.0%
! GACGAGTTTGCTCAAGTTAA+AGG - chr3_1:38456789-38456808 None:intergenic 40.0%
CAGCCACATATGTTAAGTAG+TGG - chr3_1:38457013-38457032 None:intergenic 40.0%
CTTAACATATGTGGCTGTGA+AGG + chr3_1:38457016-38457035 Msa0357210:CDS 40.0%
ATTCTCTCACGTACCCTATT+TGG + chr3_1:38457141-38457160 Msa0357210:intron 40.0%
!! CGTATTTTGAAGGGTTTTGG+TGG + chr3_1:38457208-38457227 Msa0357210:intron 40.0%
CAAGACATAGTTGCTAGGAA+TGG - chr3_1:38457578-38457597 None:intergenic 40.0%
TTCCTAGCAACTATGTCTTG+TGG + chr3_1:38457578-38457597 Msa0357210:three_prime_UTR 40.0%
TTCCACAAGACATAGTTGCT+AGG - chr3_1:38457583-38457602 None:intergenic 40.0%
TCATCCGGTTCTCAGTAGAA+AGG + chr3_1:38450767-38450786 Msa0357210:intron 45.0%
CATCCGGTTCTCAGTAGAAA+GGG + chr3_1:38450768-38450787 Msa0357210:intron 45.0%
TTCCGGTTGTGTAGTGTGAT+GGG + chr3_1:38450917-38450936 Msa0357210:intron 45.0%
AACCCATCACACTACACAAC+CGG - chr3_1:38450922-38450941 None:intergenic 45.0%
CACCCTGTTTCAAGCTTGAA+TGG - chr3_1:38451046-38451065 None:intergenic 45.0%
GAAGAGAGATGAGATTGTGG+TGG - chr3_1:38451358-38451377 None:intergenic 45.0%
!! CATGTTTGGTTCTCAAGAGG+AGG + chr3_1:38452203-38452222 Msa0357210:intron 45.0%
!! TGTTTGGTTCTCAAGAGGAG+GGG + chr3_1:38452205-38452224 Msa0357210:intron 45.0%
! ATTTGGTCGGAGGATTTTGG+AGG - chr3_1:38452444-38452463 None:intergenic 45.0%
TCCAAAATCCTCCGACCAAA+TGG + chr3_1:38452443-38452462 Msa0357210:intron 45.0%
! TCCATTTGGTCGGAGGATTT+TGG - chr3_1:38452447-38452466 None:intergenic 45.0%
TGTTATGTCCATTTGGTCGG+AGG - chr3_1:38452454-38452473 None:intergenic 45.0%
AGATACATAGGAGTGGGAGA+AGG + chr3_1:38452701-38452720 Msa0357210:intron 45.0%
CATTAGGTGATAGAGCCTCA+TGG + chr3_1:38453022-38453041 Msa0357210:intron 45.0%
GACGTGATACATATGCCATG+AGG - chr3_1:38453040-38453059 None:intergenic 45.0%
CACCCACTATCACTTAATCC+AGG + chr3_1:38453135-38453154 Msa0357210:intron 45.0%
CATTAGGTGATAGAGCCTCA+TGG + chr3_1:38453022-38453041 Msa0357210:intron 45.0%
GACGTGATACTTATGCCATG+AGG - chr3_1:38453230-38453249 None:intergenic 45.0%
CACCCACTATCACTTAATCC+AGG + chr3_1:38453135-38453154 Msa0357210:intron 45.0%
TTGAGAGTTGGACAACAGAG+AGG - chr3_1:38453390-38453409 None:intergenic 45.0%
CATTAGGTGATAGAGCCTCA+TGG + chr3_1:38453022-38453041 Msa0357210:intron 45.0%
GACGTGATACTTATGCCATG+AGG - chr3_1:38453230-38453249 None:intergenic 45.0%
CTGCTCTTCATGGCAATGTT+AGG - chr3_1:38453527-38453546 None:intergenic 45.0%
GAATGTCGTACTGCTCTTCA+TGG - chr3_1:38453537-38453556 None:intergenic 45.0%
CACCCACTATCACTTAATCC+AGG + chr3_1:38453135-38453154 Msa0357210:intron 45.0%
! TTGGGTTAGGCTCTGTTCAT+GGG - chr3_1:38453661-38453680 None:intergenic 45.0%
! TTTGGGTTAGGCTCTGTTCA+TGG - chr3_1:38453662-38453681 None:intergenic 45.0%
! GACTTGGTTCCCAAGGAAAA+AGG - chr3_1:38453960-38453979 None:intergenic 45.0%
ACTATAGCAGTGACACACTG+TGG + chr3_1:38454269-38454288 Msa0357210:CDS 45.0%
CTATAGCAGTGACACACTGT+GGG + chr3_1:38454270-38454289 Msa0357210:CDS 45.0%
GAGCCACCACCTATGTAAAA+TGG - chr3_1:38454443-38454462 None:intergenic 45.0%
! ATAGGTGGTGGCTCATATTC+AGG + chr3_1:38454449-38454468 Msa0357210:CDS 45.0%
AAGCTAGCAGTTGGAGAGTT+TGG - chr3_1:38454673-38454692 None:intergenic 45.0%
GCTTATACAGGTCAACAGCA+GGG - chr3_1:38455065-38455084 None:intergenic 45.0%
TGCTTATACAGGTCAACAGC+AGG - chr3_1:38455066-38455085 None:intergenic 45.0%
TTGTTGAAGGTCAAGTAGCC+GGG + chr3_1:38456370-38456389 Msa0357210:CDS 45.0%
! CACGATTTTGTCCTTCGCAA+AGG - chr3_1:38456520-38456539 None:intergenic 45.0%
TTGCGAAGGACAAAATCGTG+AGG + chr3_1:38456520-38456539 Msa0357210:intron 45.0%
TGCGAAGGACAAAATCGTGA+GGG + chr3_1:38456521-38456540 Msa0357210:intron 45.0%
GTACGAGATATTGTCCGCTT+TGG - chr3_1:38456559-38456578 None:intergenic 45.0%
CTCGTACACTTGTGGATTTG+AGG + chr3_1:38456572-38456591 Msa0357210:intron 45.0%
ATGCTATAGTCGAGGCTAAG+GGG - chr3_1:38456661-38456680 None:intergenic 45.0%
TAGGGTACGTGAGAGAATAG+TGG - chr3_1:38457139-38457158 None:intergenic 45.0%
TTAGTTTCTCGTGTGCCCTA+TGG - chr3_1:38457267-38457286 None:intergenic 45.0%
AGCACCCTGTAGAATGACAA+TGG - chr3_1:38457348-38457367 None:intergenic 45.0%
ATTGTCATTCTACAGGGTGC+TGG + chr3_1:38457347-38457366 Msa0357210:intron 45.0%
GGCTCATACATTTAAGCCCA+AGG + chr3_1:38457376-38457395 Msa0357210:CDS 45.0%
!!! ATTTTTTTTTTTTTTTCTTT+TGG + chr3_1:38456877-38456896 Msa0357210:intron 5.0%
GAGCCCTTTCTACTGAGAAC+CGG - chr3_1:38450774-38450793 None:intergenic 50.0%
GGTTCTCAGTAGAAAGGGCT+CGG + chr3_1:38450773-38450792 Msa0357210:intron 50.0%
CTTCCGGTTGTGTAGTGTGA+TGG + chr3_1:38450916-38450935 Msa0357210:intron 50.0%
!! GGTTGTGTAGTGTGATGGGT+TGG + chr3_1:38450921-38450940 Msa0357210:intron 50.0%
GGAAGTTCCCCATCAAAACC+AGG - chr3_1:38451025-38451044 None:intergenic 50.0%
TGGATCCGTCCTTGATGTGA+GGG + chr3_1:38452086-38452105 Msa0357210:intron 50.0%
!! GGATTTTGGAGGAGTGAGGA+GGG - chr3_1:38452433-38452452 None:intergenic 50.0%
!! AGGATTTTGGAGGAGTGAGG+AGG - chr3_1:38452434-38452453 None:intergenic 50.0%
TGTTCCACGATTAAGGGGGT+AGG + chr3_1:38452546-38452565 Msa0357210:intron 50.0%
GTTCCACGATTAAGGGGGTA+GGG + chr3_1:38452547-38452566 Msa0357210:intron 50.0%
ATACCCTACCCCCTTAATCG+TGG - chr3_1:38452553-38452572 None:intergenic 50.0%
! GCTGAAAGTGCAGAACATCC+TGG - chr3_1:38452812-38452831 None:intergenic 50.0%
CGGCTCTTCATGGCAATGTT+AGG - chr3_1:38453091-38453110 None:intergenic 50.0%
GAATGTCGTACGGCTCTTCA+TGG - chr3_1:38453101-38453120 None:intergenic 50.0%
CGGCTCTTCATGGCAATGTT+AGG - chr3_1:38453091-38453110 None:intergenic 50.0%
GAATGTCGTACGGCTCTTCA+TGG - chr3_1:38453101-38453120 None:intergenic 50.0%
! CTGGTAATTTGGAGTCTGGC+CGG - chr3_1:38453935-38453954 None:intergenic 50.0%
! GGACCTGGTAATTTGGAGTC+TGG - chr3_1:38453939-38453958 None:intergenic 50.0%
GTTCCCAAGGAAAAAGGACC+TGG - chr3_1:38453954-38453973 None:intergenic 50.0%
! GTCCCTATGCACTTTTACCG+TGG - chr3_1:38454704-38454723 None:intergenic 50.0%
! TGTTTGGTTTAGCGGCAAGC+AGG - chr3_1:38454737-38454756 None:intergenic 50.0%
GCAGGTGTAGTGATACAGAG+AGG - chr3_1:38455494-38455513 None:intergenic 50.0%
CAAGGCTCTTCATGTCAGAG+AGG + chr3_1:38455712-38455731 Msa0357210:CDS 50.0%
!! TGGCGTGCATGGTTTGTTGA+AGG + chr3_1:38456357-38456376 Msa0357210:CDS 50.0%
! CCTTCGCAAAGGCATGTCAT+AGG - chr3_1:38456509-38456528 None:intergenic 50.0%
CCTATGACATGCCTTTGCGA+AGG + chr3_1:38456506-38456525 Msa0357210:intron 50.0%
CTGGATCCGTCCTTGATGTG+AGG + chr3_1:38452085-38452104 Msa0357210:intron 55.0%
GGATCCGTCCTTGATGTGAG+GGG + chr3_1:38452087-38452106 Msa0357210:intron 55.0%
! TTGGTTCTCAAGAGGAGGGG+AGG + chr3_1:38452208-38452227 Msa0357210:intron 55.0%
!! CGGAGGATTTTGGAGGAGTG+AGG - chr3_1:38452437-38452456 None:intergenic 55.0%
AGGAGTGGGAGAAGGAGCAA+AGG + chr3_1:38452709-38452728 Msa0357210:CDS 55.0%
! CTTTGGTTCGTTGGAGGTCC+AGG + chr3_1:38452791-38452810 Msa0357210:CDS 55.0%
CGGCCAGACTCCAAATTACC+AGG + chr3_1:38453933-38453952 Msa0357210:intron 55.0%
TAGCAGTGACACACTGTGGG+TGG + chr3_1:38454273-38454292 Msa0357210:CDS 55.0%
GAGAGCTTGGATGTTGGCGT+TGG - chr3_1:38455927-38455946 None:intergenic 55.0%
GGCTCACGCAAGATCCAAAG+CGG + chr3_1:38456542-38456561 Msa0357210:intron 55.0%
AAGGGTCTTGCCATCGAGTG+TGG - chr3_1:38456635-38456654 None:intergenic 55.0%
GTCGAGGCTAAGGGGCTAAA+GGG - chr3_1:38456653-38456672 None:intergenic 55.0%
AGTCGAGGCTAAGGGGCTAA+AGG - chr3_1:38456654-38456673 None:intergenic 55.0%
!! TCTACAGGGTGCTGGACATG+TGG + chr3_1:38457355-38457374 Msa0357210:intron 55.0%
CCGTCCCCTCACATCAAGGA+CGG - chr3_1:38452094-38452113 None:intergenic 60.0%
CCGTCCTTGATGTGAGGGGA+CGG + chr3_1:38452091-38452110 Msa0357210:intron 60.0%
CGTCCTTGATGTGAGGGGAC+GGG + chr3_1:38452092-38452111 Msa0357210:intron 60.0%
TCTCCCGTCCCCTCACATCA+AGG - chr3_1:38452098-38452117 None:intergenic 60.0%
TTGATGTGAGGGGACGGGAG+AGG + chr3_1:38452097-38452116 Msa0357210:intron 60.0%
TCAACCCACGCCACACTCGA+TGG + chr3_1:38456622-38456641 Msa0357210:intron 60.0%
CTTGCCATCGAGTGTGGCGT+GGG - chr3_1:38456629-38456648 None:intergenic 60.0%
TCTTGCCATCGAGTGTGGCG+TGG - chr3_1:38456630-38456649 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 38450548 38457676 38450548 ID=Msa0357210;Name=Msa0357210
chr3_1 mRNA 38450548 38457676 38450548 ID=Msa0357210-mRNA-1;Parent=Msa0357210;Name=Msa0357210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=171|1|1|1|0.92|0.85|14|231|453
chr3_1 exon 38450548 38450714 38450548 ID=Msa0357210-mRNA-1:exon:6936;Parent=Msa0357210-mRNA-1
chr3_1 exon 38450931 38451062 38450931 ID=Msa0357210-mRNA-1:exon:6937;Parent=Msa0357210-mRNA-1
chr3_1 exon 38452703 38452848 38452703 ID=Msa0357210-mRNA-1:exon:6938;Parent=Msa0357210-mRNA-1
chr3_1 exon 38454125 38454321 38454125 ID=Msa0357210-mRNA-1:exon:6939;Parent=Msa0357210-mRNA-1
chr3_1 exon 38454407 38454509 38454407 ID=Msa0357210-mRNA-1:exon:6940;Parent=Msa0357210-mRNA-1
chr3_1 exon 38454912 38454949 38454912 ID=Msa0357210-mRNA-1:exon:6941;Parent=Msa0357210-mRNA-1
chr3_1 exon 38455045 38455146 38455045 ID=Msa0357210-mRNA-1:exon:6942;Parent=Msa0357210-mRNA-1
chr3_1 exon 38455288 38455374 38455288 ID=Msa0357210-mRNA-1:exon:6943;Parent=Msa0357210-mRNA-1
chr3_1 exon 38455455 38455568 38455455 ID=Msa0357210-mRNA-1:exon:6944;Parent=Msa0357210-mRNA-1
chr3_1 exon 38455662 38455733 38455662 ID=Msa0357210-mRNA-1:exon:6945;Parent=Msa0357210-mRNA-1
chr3_1 exon 38455836 38455954 38455836 ID=Msa0357210-mRNA-1:exon:6946;Parent=Msa0357210-mRNA-1
chr3_1 exon 38456278 38456391 38456278 ID=Msa0357210-mRNA-1:exon:6947;Parent=Msa0357210-mRNA-1
chr3_1 exon 38456980 38457037 38456980 ID=Msa0357210-mRNA-1:exon:6948;Parent=Msa0357210-mRNA-1
chr3_1 exon 38457362 38457676 38457362 ID=Msa0357210-mRNA-1:exon:6949;Parent=Msa0357210-mRNA-1
chr3_1 five_prime_UTR 38450548 38450714 38450548 ID=Msa0357210-mRNA-1:five_prime_utr;Parent=Msa0357210-mRNA-1
chr3_1 five_prime_UTR 38450931 38450934 38450931 ID=Msa0357210-mRNA-1:five_prime_utr;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38450935 38451062 38450935 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38452703 38452848 38452703 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38454125 38454321 38454125 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38454407 38454509 38454407 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38454912 38454949 38454912 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38455045 38455146 38455045 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38455288 38455374 38455288 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38455455 38455568 38455455 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38455662 38455733 38455662 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38455836 38455954 38455836 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38456278 38456391 38456278 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38456980 38457037 38456980 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 CDS 38457362 38457445 38457362 ID=Msa0357210-mRNA-1:cds;Parent=Msa0357210-mRNA-1
chr3_1 three_prime_UTR 38457446 38457676 38457446 ID=Msa0357210-mRNA-1:three_prime_utr;Parent=Msa0357210-mRNA-1
Gene Sequence

>Msa0357210

ATGGGTTGGAGATGCAGCTGTATTGTGTTAGGTACTTTAATGCTTCTGCCATTCATGGTTTATTCGGGTTCTATTGTCAAGAAACTTCCTGGTTTTGATGGGGAACTTCCATTCAAGCTTGAAACAGGATACATAGGAGTGGGAGAAGGAGCAAAGGTGCAAATGTTTTACTATTTTGTGGAGTCCCAAAGAAATCCCTTTATTGATCCAATTTTACTTTGGTTCGTTGGAGGTCCAGGATGTTCTGCACTTTCAGCATTCTTTTTCGAAAATGGGCCATTAACAATGGATGACGATTACAGTGGAATCCTTCCAAAGCTTAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATGTACATAGATATACCAGTAGGGACTGGTTTTTCTTACTCAGAAACACAAGAAGGCTACTATAGCAGTGACACACTGTGGGTGGATCATACATATTCTTTTTTACAAAAGTGGATTATTGATCATCCAAAGTTTAGCTCAAATCCATTTTACATAGGTGGTGGCTCATATTCAGGATTTACTACCGGTCCTGTTGTTCAAAAAGTATATGAAGGATACATAGCAAGACATAAGCCACATATAAACATCAAAGGTTATGTGCTTGCAAGCCCTGCTGTTGACCTGTATAAGCATATAAACGTGAAAGTTTTATATGCATACCATATGAATCTTATACCAAAAGAACTCTATGAGTCATTGGAGGAAAATTGTAAGGGTGATTATGTAAACATTGATCCAAATAACACAAAGTGTGTCTCAGATTATGAAGCTTATTCTGAGCTAGTTCGATATATAAACGAACAACAAATTTTAGAACCTCTCTGTATCACTACACCTGCTGTAAACCAGATAATTCGACAACCTGTTCAAGATGATCAAGAATTTTGGTGTAGAAGTTATTATCATATTCTGGTCGACATATGGGCAAACGATGAAAATGTGCGCAAGGCTCTTCATGTCAGAGAGGGAACTAAAGGGGAGTTTTTGAGATGCAACAAGACTTTGGCATACACACAAACACTAACCAGTGCTGTAGAATATTATCGCAATCTCACCAACGCCAACATCCAAGCTCTCATTTATGGTTCTGATCTTGACTTTTCTGTACCACAACTGAGTACACAATCTTGGATCAAGTCATTCAACATGAGCATACATGATAAATGGCGTGCATGGTTTGTTGAAGGTCAAGTAGCCGGATTCACAGAAATCTACAAGATGAAAGAAGACCACTACTTAACATATGTGGCTGTGAAGGGTGCTGGACATGTGGCTCATACATTTAAGCCCAAGGAAGTTTATAATATGATCAAGAGATGGTTTTCATTTTCTCTTATCTAA
Protein sequence

>Msa0357210

MGWRCSCIVLGTLMLLPFMVYSGSIVKKLPGFDGELPFKLETGYIGVGEGAKVQMFYYFVESQRNPFIDPILLWFVGGPGCSALSAFFFENGPLTMDDDYSGILPKLKLNPYGWTHMLNMMYIDIPVGTGFSYSETQEGYYSSDTLWVDHTYSFLQKWIIDHPKFSSNPFYIGGGSYSGFTTGPVVQKVYEGYIARHKPHINIKGYVLASPAVDLYKHINVKVLYAYHMNLIPKELYESLEENCKGDYVNIDPNNTKCVSDYEAYSELVRYINEQQILEPLCITTPAVNQIIRQPVQDDQEFWCRSYYHILVDIWANDENVRKALHVREGTKGEFLRCNKTLAYTQTLTSAVEYYRNLTNANIQALIYGSDLDFSVPQLSTQSWIKSFNMSIHDKWRAWFVEGQVAGFTEIYKMKEDHYLTYVAVKGAGHVAHTFKPKEVYNMIKRWFSFSLI*