AlfalfaGEDB | Msa0443870

M. sativa cultivar zhongmu-4 / Msa0443870

KEGG: K14571
GO: -
PFAM: PF00004.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443870	XP_013459065.1	31.338	284	144	7	270	523	113	375	2.03e-25	123
Msa0443870	XP_013459065.1	93.617	470	28	1	73	540	208	677	0.0	877

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443870	sp\|Q9SS94\|CD48C_ARATH	52.000	475	198	7	73	538	348	801	8.43e-155	465
Msa0443870	sp\|Q9SS94\|CD48C_ARATH	35.200	250	131	5	252	491	232	460	5.57e-34	140

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443870	A0A072UVK5	31.338	284	144	7	270	523	113	375	9.68e-26	123
Msa0443870	A0A072UVK5	93.617	470	28	1	73	540	208	677	0.0	877

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0443870	0.811659	6.268635e-51	-8.615850e-47
Msa0026910	Msa0443870	0.808869	2.505567e-50	-8.615850e-47
Msa0045790	Msa0443870	0.807316	5.366040e-50	-8.615850e-47
Msa0046160	Msa0443870	0.801096	1.057899e-48	-8.615850e-47
Msa0054820	Msa0443870	0.803053	4.188064e-49	-8.615850e-47
Msa0056450	Msa0443870	0.822735	2.020340e-53	-8.615850e-47
Msa0082440	Msa0443870	0.813955	1.969012e-51	-8.615850e-47
Msa0131330	Msa0443870	0.811869	5.641392e-51	-8.615850e-47
Msa0183760	Msa0443870	0.812158	4.879113e-51	-8.615850e-47
Msa0187830	Msa0443870	0.801765	7.716746e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443870	MtrunA17_Chr3g0086401	93.617	470	28	1	73	540	208	677	0.0	877
Msa0443870	MtrunA17_Chr3g0086401	31.338	284	144	7	270	523	113	375	1.86e-29	123
Msa0443870	MtrunA17_Chr3g0086411	76.159	453	107	1	73	524	37	489	0.0	685
Msa0443870	MtrunA17_Chr3g0086411	33.953	215	97	6	338	523	7	205	2.23e-19	91.3
Msa0443870	MtrunA17_Chr2g0277831	63.983	472	144	5	73	539	360	810	0.0	587
Msa0443870	MtrunA17_Chr2g0277831	38.934	244	126	4	252	491	245	469	6.41e-39	152
Msa0443870	MtrunA17_Chr1g0180791	39.139	488	237	8	71	538	321	768	2.55e-103	328
Msa0443870	MtrunA17_Chr1g0180791	35.862	290	160	4	241	522	196	467	1.27e-42	162
Msa0443870	MtrunA17_Chr7g0264521	38.540	493	243	9	65	538	317	768	2.41e-102	326
Msa0443870	MtrunA17_Chr7g0264521	35.517	290	161	4	241	522	197	468	4.34e-42	161

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0443870	AT3G01610.1	52.000	475	198	7	73	538	348	801	8.57e-156	465
Msa0443870	AT3G01610.1	35.200	250	131	5	252	491	232	460	5.66e-35	140
Msa0443870	AT3G01610.2	52.000	475	198	7	73	538	348	801	1.20e-155	465
Msa0443870	AT3G01610.2	35.200	250	131	5	252	491	232	460	5.71e-35	140
Msa0443870	AT5G03340.1	38.525	488	240	8	71	538	320	767	1.87e-103	329
Msa0443870	AT5G03340.1	35.640	289	160	4	241	521	195	465	3.45e-42	162
Msa0443870	AT3G53230.1	38.008	492	246	9	65	538	316	766	1.01e-100	322
Msa0443870	AT3G53230.1	34.828	290	163	4	241	522	196	467	7.26e-41	158
Msa0443870	AT3G09840.1	38.934	488	238	8	71	538	320	767	1.76e-100	321
Msa0443870	AT3G09840.1	35.986	289	159	4	241	521	195	465	9.87e-43	163

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Find 153 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGCCAGGTCTACGCC+GGG	0.581172	3_3:+16053675	Msa0443870:CDS
AAAATATCCCGAGGATTATG+AGG	0.537880	3_3:+16054114	Msa0443870:CDS
AAACTTACTCCGATTACAGC+TGG	0.507849	3_3:+16051734	Msa0443870:five_prime_UTR
AAAGCTGGTGGAAGGAGCAT+TGG	0.555698	3_3:+16053811	Msa0443870:CDS
AAAGCTGTTGCAAATGAAGC+CGG	0.559617	3_3:+16054920	Msa0443870:CDS
AAATCAGCACCAACAAATCC+CGG	0.557005	3_3:-16053693	None:intergenic
AAATCCACACTGGCATCAAT+AGG	0.435530	3_3:-16055967	None:intergenic
AACAAATCCCGGCGTAGACC+TGG	0.509745	3_3:-16053682	None:intergenic
AAGGCGTATAAAATATCCCG+AGG	0.690244	3_3:+16054105	Msa0443870:CDS
AATAACATCAAGCCTATTTG+TGG	0.488984	3_3:-16053514	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCATACTCTTTAATCAATTC+AGG	-	chr3_3:16051997-16052016	None:intergenic	30.0%
CCTGAATTGATTAAAGAGTA+TGG	+	chr3_3:16051994-16052013	Msa0443870:five_prime_UTR	30.0%
TATGGAATGAAACCTAAAAC+AGG	+	chr3_3:16052012-16052031	Msa0443870:five_prime_UTR	30.0%
GTAGCAGAAATAGGATAAAA+GGG	-	chr3_3:16052111-16052130	None:intergenic	30.0%
AGTAGCAGAAATAGGATAAA+AGG	-	chr3_3:16052112-16052131	None:intergenic	30.0%
AAGAAGAGTAGATTAAATGG+AGG	+	chr3_3:16052186-16052205	Msa0443870:intron	30.0%
AGAAGAGTAGATTAAATGGA+GGG	+	chr3_3:16052187-16052206	Msa0443870:intron	30.0%
GTAATCAGATAACTAGAGAT+AGG	+	chr3_3:16052209-16052228	Msa0443870:intron	30.0%
ACCTCAATTGAAAAAATACG+TGG	+	chr3_3:16052311-16052330	Msa0443870:intron	30.0%
TAAAAGCCTCATTAATGAGT+TGG	+	chr3_3:16052509-16052528	Msa0443870:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	16051578	16057201	16051578	ID=Msa0443870;Name=Msa0443870
chr3_3	mRNA	16051578	16057201	16051578	ID=Msa0443870-mRNA-1;Parent=Msa0443870;Name=Msa0443870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=468\|1\|1\|1\|0.66\|0.69\|13\|338\|540
chr3_3	exon	16051578	16052144	16051578	ID=Msa0443870-mRNA-1:exon:3366;Parent=Msa0443870-mRNA-1
chr3_3	exon	16053294	16053881	16053294	ID=Msa0443870-mRNA-1:exon:3367;Parent=Msa0443870-mRNA-1
chr3_3	exon	16053983	16054135	16053983	ID=Msa0443870-mRNA-1:exon:3368;Parent=Msa0443870-mRNA-1
chr3_3	exon	16054848	16054964	16054848	ID=Msa0443870-mRNA-1:exon:3369;Parent=Msa0443870-mRNA-1
chr3_3	exon	16055063	16055167	16055063	ID=Msa0443870-mRNA-1:exon:3370;Parent=Msa0443870-mRNA-1
chr3_3	exon	16055507	16055572	16055507	ID=Msa0443870-mRNA-1:exon:3371;Parent=Msa0443870-mRNA-1
chr3_3	exon	16055652	16055716	16055652	ID=Msa0443870-mRNA-1:exon:3372;Parent=Msa0443870-mRNA-1
chr3_3	exon	16055801	16056050	16055801	ID=Msa0443870-mRNA-1:exon:3373;Parent=Msa0443870-mRNA-1
chr3_3	exon	16056260	16056391	16056260	ID=Msa0443870-mRNA-1:exon:3374;Parent=Msa0443870-mRNA-1
chr3_3	exon	16056481	16056574	16056481	ID=Msa0443870-mRNA-1:exon:3375;Parent=Msa0443870-mRNA-1
chr3_3	exon	16056756	16056830	16056756	ID=Msa0443870-mRNA-1:exon:3376;Parent=Msa0443870-mRNA-1
chr3_3	exon	16056931	16057065	16056931	ID=Msa0443870-mRNA-1:exon:3377;Parent=Msa0443870-mRNA-1
chr3_3	exon	16057120	16057201	16057120	ID=Msa0443870-mRNA-1:exon:3378;Parent=Msa0443870-mRNA-1
chr3_3	five_prime_UTR	16051578	16052045	16051578	ID=Msa0443870-mRNA-1:five_prime_utr;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16052046	16052144	16052046	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16053294	16053881	16053294	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16053983	16054135	16053983	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16054848	16054964	16054848	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16055063	16055167	16055063	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16055507	16055572	16055507	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16055652	16055716	16055652	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16055801	16056050	16055801	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16056260	16056391	16056260	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	CDS	16056481	16056528	16056481	ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3	three_prime_UTR	16056529	16056574	16056529	ID=Msa0443870-mRNA-1:three_prime_utr;Parent=Msa0443870-mRNA-1
chr3_3	three_prime_UTR	16056756	16056830	16056756	ID=Msa0443870-mRNA-1:three_prime_utr;Parent=Msa0443870-mRNA-1
chr3_3	three_prime_UTR	16056931	16057065	16056931	ID=Msa0443870-mRNA-1:three_prime_utr;Parent=Msa0443870-mRNA-1
chr3_3	three_prime_UTR	16057120	16057201	16057120	ID=Msa0443870-mRNA-1:three_prime_utr;Parent=Msa0443870-mRNA-1

Gene Sequence

>Msa0443870

ATGGGCCGTCAGGTTGTGGAAAAACTACACTTGCTTATGCAATTGCTAATGAAGCTGAAGTTCCCTTTTATCCTATTTCTGCTACTGATGTTGTTTCCGGGAGATCTGAAGAAAACATTGCAGCGCTTTTCTCTAAAGCAAAAGGGACTGCTCCATCTGTTATCTTTATTGATGAGATTGATGCAATTGCTTCGGAAAGAGAGAATTTACACAGGACAGATAGAGACACGAATTATGGCAGAATTATTAACTTGCATGGATGAAGCTTGTTGTTCAGGAAGTTCTGATGAAACTACTGGTTATGTTCTTGTAATTGGAGCCACAAATAGGCTTGATGTTATTGACTCTGCTCTTAGAAGGCCTGGTCGTTTTGATTGTGAAATTCTTGTTGGCATTCCTGATGAATCTGCGAGGGAGGAGATCCTTATCATGCATACTCGAAATTGCAGTCACAAGCTTGATGGTTCAGTTGATCTGAGAAAAATAGCCAGGTCTACGCCGGGATTTGTTGGTGCTGATTTAGAAGCTCTGGTTGGCAAAGTTGTCGAGCTGGCATTTCAGAGGATAATGGATGAAATGGAACCTGAATCATCTAATGATAGCATGAGTGATGATGAAAGCTGGTGGAAGGAGCATTGGTCGCCTGAACAAAAAAATAAATTTGCAATCAATATGTCTGACTTTGAGGAAGCAATCAAAATGGTACAACCTTCGTCAATAAGAGAAGGACTCTCTCCCATTCCTGATGTTAAATGGGAAGATGTTGGTGCGCTTGATCTTGTAAAAGAGGAGTTTGATCTCCACATTCTAAGGCGTATAAAATATCCCGAGGATTATGAGGGACTTGGGTTGGATCGAGACACGGGGTTTTTGCTTTACGGGCCTCCAGGATGTGGTAAAACACTGATTGGCAAAGCTGTTGCAAATGAAGCCGGAGTTAATTTCATTTATATTAAGGGTCCTGAGCTTCTAAATAAATATGTTGGAGAAAGCGAGCGTGGAGTCCAGAAATTATTTGATCGTGCAAGGGCATGTGCACCATGTATACTTTTTCTTGATGAGGTGGATGCTTTGACAACAAAACATGGCAATGAAGGTGCACTGGTTATTGAAAGAATATTGAAACAGTTGCTTATTGAGTTAGATAGCGCAGAGCAACGGACAGGTGTTTTCGTGATTGGTGCAACAAATAGGCCTGAGGTGATGGACAGTGCTCTCCTAAGGCCAGGTAGATTTGGTAATCTTATTCATATCCCTCTTCCAAGCCCAGACGACCGTGTTTCGATATTGAAAGCTCTTGCAAGGCGTAAGGAAACTCTTGCAAGGCGTAAGGAAACTCATGCAAGGTTTAAGCTTAAGCCTATTGATGCCAGTGTGGATTTGAACGACATAGCAAGAATGAAAGCTTGTAAAAACTTTAATGGTGCTGATCTTGCTGCATTGATGGACAATGCAATATTGGCTGCTCTCAAGGAGAAGTGGACCGCAACCAGGACAAAAGATGATACTTTGACTGTCAAGGCAAGGCATTTTGAGGTAGCACTGACTAAAGTCTCTCCCTCTGTGTCAGATATGCAAAGGAAGTACTATGAGGGTATTTCAAAGAGCTTTAAGGCAAAATGA

Protein sequence

>Msa0443870

MGRQVVEKLHLLMQLLMKLKFPFILFLLLMLFPGDLKKTLQRFSLKQKGLLHLLSLLMRLMQLLRKERIYTGQIETRIMAELLTCMDEACCSGSSDETTGYVLVIGATNRLDVIDSALRRPGRFDCEILVGIPDESAREEILIMHTRNCSHKLDGSVDLRKIARSTPGFVGADLEALVGKVVELAFQRIMDEMEPESSNDSMSDDESWWKEHWSPEQKNKFAINMSDFEEAIKMVQPSSIREGLSPIPDVKWEDVGALDLVKEEFDLHILRRIKYPEDYEGLGLDRDTGFLLYGPPGCGKTLIGKAVANEAGVNFIYIKGPELLNKYVGESERGVQKLFDRARACAPCILFLDEVDALTTKHGNEGALVIERILKQLLIELDSAEQRTGVFVIGATNRPEVMDSALLRPGRFGNLIHIPLPSPDDRVSILKALARRKETLARRKETHARFKLKPIDASVDLNDIARMKACKNFNGADLAALMDNAILAALKEKWTATRTKDDTLTVKARHFEVALTKVSPSVSDMQRKYYEGISKSFKAK*