AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0443870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443870 MtrunA17_Chr3g0086401 93.617 470 28 1 73 540 208 677 0.0 877
Msa0443870 MtrunA17_Chr3g0086401 31.338 284 144 7 270 523 113 375 1.86e-29 123
Msa0443870 MtrunA17_Chr3g0086411 76.159 453 107 1 73 524 37 489 0.0 685
Msa0443870 MtrunA17_Chr3g0086411 33.953 215 97 6 338 523 7 205 2.23e-19 91.3
Msa0443870 MtrunA17_Chr2g0277831 63.983 472 144 5 73 539 360 810 0.0 587
Msa0443870 MtrunA17_Chr2g0277831 38.934 244 126 4 252 491 245 469 6.41e-39 152
Msa0443870 MtrunA17_Chr1g0180791 39.139 488 237 8 71 538 321 768 2.55e-103 328
Msa0443870 MtrunA17_Chr1g0180791 35.862 290 160 4 241 522 196 467 1.27e-42 162
Msa0443870 MtrunA17_Chr7g0264521 38.540 493 243 9 65 538 317 768 2.41e-102 326
Msa0443870 MtrunA17_Chr7g0264521 35.517 290 161 4 241 522 197 468 4.34e-42 161
Msa0443870 MtrunA17_Chr2g0327121 38.934 488 238 9 71 538 323 770 6.28e-102 325
Msa0443870 MtrunA17_Chr2g0327121 34.629 283 157 4 249 522 206 469 8.86e-40 154
Msa0443870 MtrunA17_Chr7g0255721 36.203 453 243 9 102 538 524 946 2.83e-82 275
Msa0443870 MtrunA17_Chr7g0255721 34.400 250 139 3 260 502 394 625 1.08e-31 130
Msa0443870 MtrunA17_Chr7g0255641 37.358 439 223 9 102 538 531 919 7.65e-81 271
Msa0443870 MtrunA17_Chr7g0255641 33.193 238 137 5 287 522 430 647 3.26e-28 119
Msa0443870 MtrunA17_Chr7g0255651 34.430 456 246 8 77 529 138 543 2.69e-75 249
Msa0443870 MtrunA17_Chr7g0255651 26.971 241 148 7 290 523 53 272 1.71e-14 76.3
Msa0443870 MtrunA17_Chr2g0327231 40.625 320 163 7 95 407 207 506 4.16e-68 228
Msa0443870 MtrunA17_Chr2g0327231 40.594 101 56 2 241 341 144 240 2.60e-15 78.6
Msa0443870 MtrunA17_Chr7g0255691 33.619 467 253 8 73 536 138 550 1.31e-67 228
Msa0443870 MtrunA17_Chr7g0255691 30.855 269 153 9 267 523 29 276 3.76e-23 103
Msa0443870 MtrunA17_Chr4g0043381 32.809 445 251 8 100 537 705 1108 5.55e-61 217
Msa0443870 MtrunA17_Chr7g0255901 34.328 469 258 16 94 539 480 921 8.00e-61 216
Msa0443870 MtrunA17_Chr7g0217421 38.828 273 142 8 237 504 27 279 5.83e-45 163
Msa0443870 MtrunA17_Chr7g0217421 43.651 126 62 3 77 202 163 279 9.20e-19 88.6
Msa0443870 MtrunA17_Chr4g0052411 38.346 266 140 6 244 504 223 469 3.70e-43 163
Msa0443870 MtrunA17_Chr4g0052411 42.857 126 63 3 77 202 353 469 4.28e-18 87.8
Msa0443870 MtrunA17_Chr4g0050561 36.101 277 144 5 247 518 153 401 5.69e-43 158
Msa0443870 MtrunA17_Chr4g0050561 39.604 101 52 2 77 177 282 373 2.37e-11 65.9
Msa0443870 MtrunA17_Chr2g0297281 37.970 266 141 7 244 504 280 526 2.49e-42 161
Msa0443870 MtrunA17_Chr2g0297281 42.063 126 64 3 77 202 410 526 2.92e-17 85.5
Msa0443870 MtrunA17_Chr5g0432631 41.502 253 129 6 249 501 228 461 1.57e-41 159
Msa0443870 MtrunA17_Chr5g0432631 53.247 77 34 2 102 178 368 442 2.59e-11 66.6
Msa0443870 MtrunA17_Chr8g0362771 36.610 295 148 8 249 532 236 502 2.61e-40 155
Msa0443870 MtrunA17_Chr8g0362771 46.914 81 41 1 102 182 377 455 4.41e-12 68.9
Msa0443870 MtrunA17_Chr1g0158881 38.951 267 137 9 237 498 315 560 2.68e-40 155
Msa0443870 MtrunA17_Chr1g0158881 46.753 77 39 1 102 178 467 541 3.25e-12 69.3
Msa0443870 MtrunA17_Chr3g0135721 38.095 252 137 4 250 501 224 456 4.72e-40 154
Msa0443870 MtrunA17_Chr3g0135721 49.351 77 37 1 102 178 363 437 5.75e-11 65.5
Msa0443870 MtrunA17_Chr3g0108321 44.068 177 96 2 248 421 157 333 1.86e-39 147
Msa0443870 MtrunA17_Chr8g0345461 34.672 274 150 6 235 501 150 401 1.96e-39 149
Msa0443870 MtrunA17_Chr3g0145011 37.398 246 133 4 249 491 138 365 2.08e-39 148
Msa0443870 MtrunA17_Chr3g0143721 39.442 251 129 6 246 492 245 476 2.43e-39 152
Msa0443870 MtrunA17_Chr3g0143721 42.657 143 67 5 77 219 373 500 4.94e-19 90.9
Msa0443870 MtrunA17_Chr3g0094871 36.264 273 143 6 250 518 11 256 8.63e-39 147
Msa0443870 MtrunA17_Chr2g0331161 37.500 256 138 4 249 501 414 650 9.70e-39 151
Msa0443870 MtrunA17_Chr2g0331161 36.641 131 70 3 72 202 534 651 8.64e-12 68.2
Msa0443870 MtrunA17_Chr3g0141901 36.992 246 134 4 249 491 135 362 1.44e-38 145
Msa0443870 MtrunA17_Chr3g0135761 36.364 253 142 4 249 501 221 454 1.11e-37 147
Msa0443870 MtrunA17_Chr7g0248361 35.165 273 147 7 250 518 192 438 2.09e-37 146
Msa0443870 MtrunA17_Chr1g0200081 34.307 274 150 7 235 501 160 410 3.68e-37 142
Msa0443870 MtrunA17_Chr7g0260601 35.531 273 146 6 250 518 240 486 9.88e-37 144
Msa0443870 MtrunA17_Chr7g0260601 42.857 77 44 0 98 174 379 455 3.23e-11 66.2
Msa0443870 MtrunA17_Chr4g0031821 34.799 273 148 6 250 518 320 566 1.17e-36 145
Msa0443870 MtrunA17_Chr4g0031821 28.358 201 110 4 28 194 360 560 2.52e-11 66.6
Msa0443870 MtrunA17_Chr6g0459561 33.223 301 167 9 248 537 380 657 2.81e-36 143
Msa0443870 MtrunA17_Chr5g0429571 38.525 244 129 4 250 489 313 539 2.85e-36 144
Msa0443870 MtrunA17_Chr5g0429571 39.837 123 67 1 66 188 427 542 4.01e-14 75.5
Msa0443870 MtrunA17_Chr3g0104211 38.462 247 131 4 250 492 304 533 4.46e-36 143
Msa0443870 MtrunA17_Chr3g0104211 43.119 109 55 1 77 185 429 530 3.25e-14 75.9
Msa0443870 MtrunA17_Chr1g0182711 37.551 245 132 4 252 493 190 416 4.87e-36 139
Msa0443870 MtrunA17_Chr7g0262801 37.551 245 132 4 252 493 189 415 1.13e-35 138
Msa0443870 MtrunA17_Chr4g0033451 32.333 300 168 7 235 522 371 647 1.68e-35 142
Msa0443870 MtrunA17_Chr4g0033451 26.328 433 255 14 73 470 503 906 1.42e-16 83.6
Msa0443870 MtrunA17_Chr2g0316851 37.500 248 133 4 252 494 596 826 2.14e-35 142
Msa0443870 MtrunA17_Chr2g0316851 42.241 116 59 2 73 188 717 824 2.52e-16 82.8
Msa0443870 MtrunA17_Chr6g0476861 35.531 273 146 6 250 518 197 443 2.44e-35 140
Msa0443870 MtrunA17_Chr8g0388371 35.106 282 148 7 250 515 404 666 3.08e-35 141
Msa0443870 MtrunA17_Chr3g0135781 42.857 161 91 1 249 409 54 213 5.97e-35 130
Msa0443870 MtrunA17_Chr1g0192151 31.128 257 156 3 248 501 165 403 1.06e-34 135
Msa0443870 MtrunA17_Chr1g0192151 38.889 126 68 3 77 202 292 408 1.09e-11 67.0
Msa0443870 MtrunA17_Chr4g0014731 31.128 257 156 3 248 501 166 404 1.22e-34 135
Msa0443870 MtrunA17_Chr4g0014731 38.889 126 68 3 77 202 293 409 1.14e-11 67.0
Msa0443870 MtrunA17_Chr6g0456351 37.200 250 139 4 250 498 317 549 1.36e-34 137
Msa0443870 MtrunA17_Chr6g0456351 40.179 112 60 1 77 188 438 542 3.54e-13 72.0
Msa0443870 MtrunA17_Chr4g0004121 33.766 308 161 10 241 527 233 518 2.21e-33 133
Msa0443870 MtrunA17_Chr6g0459541 31.307 329 201 10 230 537 18 342 4.71e-33 129
Msa0443870 MtrunA17_Chr3g0129971 36.948 249 136 7 250 492 296 529 6.10e-33 134
Msa0443870 MtrunA17_Chr3g0129971 42.708 96 53 1 98 191 436 531 1.19e-11 67.8
Msa0443870 MtrunA17_Chr4g0052271 37.021 235 129 7 214 433 72 302 1.28e-32 129
Msa0443870 MtrunA17_Chr4g0026631 38.119 202 113 6 238 431 110 307 2.59e-32 129
Msa0443870 MtrunA17_Chr1g0204031 31.959 291 159 11 217 492 516 782 4.16e-32 131
Msa0443870 MtrunA17_Chr6g0459551 29.730 333 205 9 230 539 78 404 5.30e-32 127
Msa0443870 MtrunA17_Chr5g0432641 35.317 252 144 4 250 501 191 423 2.31e-31 128
Msa0443870 MtrunA17_Chr2g0321241 39.037 187 107 5 248 431 130 312 2.46e-31 126
Msa0443870 MtrunA17_Chr8g0387641 32.558 258 147 7 249 501 520 755 6.69e-31 127
Msa0443870 MtrunA17_Chr5g0397121 32.661 248 140 7 250 492 513 738 2.94e-30 125
Msa0443870 MtrunA17_Chr6g0462581 33.871 248 136 7 250 492 500 724 3.93e-30 125
Msa0443870 MtrunA17_Chr1g0202371 27.500 400 229 11 124 492 252 621 6.12e-30 124
Msa0443870 MtrunA17_Chr1g0202381 32.819 259 147 8 240 492 456 693 7.05e-30 124
Msa0443870 MtrunA17_Chr7g0246111 32.734 278 154 10 248 519 210 460 1.20e-28 119
Msa0443870 MtrunA17_Chr4g0038101 31.690 284 164 9 250 523 721 984 3.94e-28 119
Msa0443870 MtrunA17_Chr1g0195741 34.008 247 139 7 250 492 938 1164 5.14e-28 119
Msa0443870 MtrunA17_Chr4g0047411 30.961 281 161 9 272 533 198 464 6.93e-27 115
Msa0443870 MtrunA17_Chr4g0047411 25.337 371 229 13 74 433 306 639 1.41e-14 76.6
Msa0443870 MtrunA17_Chr3g0127431 30.364 247 149 5 249 492 83 309 1.80e-26 111
Msa0443870 MtrunA17_Chr3g0127401 28.966 290 164 10 216 492 46 306 1.94e-26 111
Msa0443870 MtrunA17_Chr1g0195731 32.389 247 143 7 250 492 934 1160 1.98e-26 114
Msa0443870 MtrunA17_Chr3g0116131 30.508 295 164 8 250 523 902 1176 2.19e-26 114
Msa0443870 MtrunA17_Chr1g0190401 31.651 218 124 6 242 440 657 868 7.59e-22 100
Msa0443870 MtrunA17_Chr2g0289231 31.633 196 123 3 249 435 296 489 1.18e-21 98.6
Msa0443870 MtrunA17_Chr5g0432391 36.216 185 97 4 317 501 73 236 1.07e-20 94.7
Msa0443870 MtrunA17_Chr8g0357301 27.830 212 124 4 289 491 508 699 1.27e-20 96.3
Msa0443870 MtrunA17_Chr1g0168321 33.005 203 107 6 320 518 196 373 3.70e-19 90.5
Msa0443870 MtrunA17_Chr6g0459531 26.014 296 168 8 248 537 65 315 6.50e-19 87.8
Msa0443870 MtrunA17_Chr4g0062081 41.026 78 45 1 254 330 11 88 1.35e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443870 AT3G01610.1 52.000 475 198 7 73 538 348 801 8.57e-156 465
Msa0443870 AT3G01610.1 35.200 250 131 5 252 491 232 460 5.66e-35 140
Msa0443870 AT3G01610.2 52.000 475 198 7 73 538 348 801 1.20e-155 465
Msa0443870 AT3G01610.2 35.200 250 131 5 252 491 232 460 5.71e-35 140
Msa0443870 AT5G03340.1 38.525 488 240 8 71 538 320 767 1.87e-103 329
Msa0443870 AT5G03340.1 35.640 289 160 4 241 521 195 465 3.45e-42 162
Msa0443870 AT3G53230.1 38.008 492 246 9 65 538 316 766 1.01e-100 322
Msa0443870 AT3G53230.1 34.828 290 163 4 241 522 196 467 7.26e-41 158
Msa0443870 AT3G09840.1 38.934 488 238 8 71 538 320 767 1.76e-100 321
Msa0443870 AT3G09840.1 35.986 289 159 4 241 521 195 465 9.87e-43 163
Msa0443870 AT3G56690.1 33.013 521 257 9 73 538 499 982 4.29e-81 273
Msa0443870 AT3G56690.1 34.762 210 120 3 282 491 413 605 2.10e-30 127
Msa0443870 AT2G03670.1 34.402 468 244 8 75 538 142 550 2.62e-66 226
Msa0443870 AT2G03670.1 30.916 262 148 6 269 523 38 273 2.09e-28 119
Msa0443870 AT1G03000.1 33.747 483 267 16 84 540 484 939 8.17e-63 222
Msa0443870 AT5G08470.1 35.056 445 239 10 100 537 711 1112 3.46e-59 213
Msa0443870 AT5G08470.3 35.056 445 239 10 100 537 702 1103 4.59e-59 212
Msa0443870 AT2G03670.2 37.025 316 161 5 75 386 142 423 1.31e-46 169
Msa0443870 AT2G03670.2 30.916 262 148 6 269 523 38 273 5.28e-29 119
Msa0443870 AT5G15250.1 40.226 266 135 6 244 504 215 461 1.24e-45 171
Msa0443870 AT5G15250.1 45.238 126 60 3 77 202 345 461 1.04e-18 90.1
Msa0443870 AT5G15250.2 38.462 273 153 7 244 504 215 484 5.72e-44 163
Msa0443870 AT5G15250.2 38.926 149 59 5 77 202 345 484 4.15e-15 78.6
Msa0443870 AT2G30950.4 38.346 266 140 6 244 504 222 468 6.10e-44 166
Msa0443870 AT2G30950.4 41.270 126 65 3 77 202 352 468 1.03e-16 84.0
Msa0443870 AT2G30950.1 38.346 266 140 6 244 504 218 464 6.89e-44 166
Msa0443870 AT2G30950.1 41.270 126 65 3 77 202 348 464 1.08e-16 84.0
Msa0443870 AT2G30950.2 38.346 266 140 6 244 504 218 464 6.89e-44 166
Msa0443870 AT2G30950.2 41.270 126 65 3 77 202 348 464 1.08e-16 84.0
Msa0443870 AT2G30950.3 38.346 266 140 6 244 504 218 464 6.89e-44 166
Msa0443870 AT2G30950.3 41.270 126 65 3 77 202 348 464 1.08e-16 84.0
Msa0443870 AT1G06430.1 37.970 266 141 6 244 504 211 457 1.13e-43 165
Msa0443870 AT1G06430.1 40.476 126 66 3 77 202 341 457 3.82e-16 82.0
Msa0443870 AT1G06430.3 37.970 266 141 6 244 504 211 457 1.13e-43 165
Msa0443870 AT1G06430.3 40.476 126 66 3 77 202 341 457 3.82e-16 82.0
Msa0443870 AT1G06430.2 37.970 266 141 6 244 504 211 457 1.13e-43 165
Msa0443870 AT1G06430.2 40.476 126 66 3 77 202 341 457 3.82e-16 82.0
Msa0443870 AT5G19990.2 36.823 277 142 6 247 518 97 345 2.52e-43 158
Msa0443870 AT5G19990.2 39.604 101 52 2 77 177 226 317 9.13e-11 64.3
Msa0443870 AT5G19990.1 36.823 277 142 6 247 518 155 403 5.73e-43 159
Msa0443870 AT5G19990.1 39.604 101 52 2 77 177 284 375 7.98e-11 64.7
Msa0443870 AT5G19990.3 36.823 277 142 6 247 518 155 403 5.73e-43 159
Msa0443870 AT5G19990.3 39.604 101 52 2 77 177 284 375 7.98e-11 64.7
Msa0443870 AT5G20000.1 36.823 277 142 6 247 518 155 403 9.41e-43 158
Msa0443870 AT5G20000.1 39.604 101 52 2 77 177 284 375 8.64e-11 64.7
Msa0443870 AT5G53170.1 39.922 258 132 8 237 492 345 581 3.69e-42 162
Msa0443870 AT5G53170.1 50.649 77 36 1 102 178 497 571 3.44e-13 72.8
Msa0443870 AT2G26140.1 36.806 288 154 8 250 532 224 488 1.06e-40 157
Msa0443870 AT2G26140.1 49.351 77 37 1 102 178 363 437 5.85e-11 65.9
Msa0443870 AT5G08470.2 35.548 301 166 5 100 396 711 987 1.13e-40 157
Msa0443870 AT5G42270.1 40.239 251 127 6 246 492 243 474 1.84e-40 156
Msa0443870 AT5G42270.1 42.657 143 67 5 77 219 371 498 3.39e-19 91.7
Msa0443870 AT1G50250.1 39.442 251 129 6 246 492 255 486 3.71e-40 155
Msa0443870 AT1G50250.1 42.657 143 67 5 77 219 383 510 6.55e-19 90.9
Msa0443870 AT5G58290.1 44.068 177 96 2 248 421 150 326 3.39e-39 148
Msa0443870 AT1G53750.1 34.672 274 150 6 235 501 150 401 3.44e-39 148
Msa0443870 AT1G45000.1 36.585 246 135 4 249 491 135 362 2.85e-38 145
Msa0443870 AT1G53780.1 33.942 274 152 6 235 501 322 573 5.70e-38 148
Msa0443870 AT1G53780.4 33.942 274 152 6 235 501 322 573 5.70e-38 148
Msa0443870 AT1G53780.3 33.942 274 152 6 235 501 321 572 5.76e-38 147
Msa0443870 AT1G53780.2 33.942 274 152 6 235 501 343 594 6.14e-38 148
Msa0443870 AT5G43010.1 36.179 246 136 4 249 491 135 362 8.29e-38 144
Msa0443870 AT3G27120.1 33.110 299 170 9 248 537 398 675 9.90e-38 148
Msa0443870 AT5G58870.1 38.583 254 134 5 250 498 326 562 4.53e-37 146
Msa0443870 AT5G58870.1 41.667 120 63 1 66 185 440 552 8.09e-16 81.3
Msa0443870 AT3G16290.1 36.328 256 141 4 249 501 406 642 1.11e-36 145
Msa0443870 AT3G47060.1 38.095 252 131 5 250 495 322 554 1.32e-36 145
Msa0443870 AT3G47060.1 41.525 118 62 1 77 194 447 557 1.47e-15 80.5
Msa0443870 AT4G23940.1 36.630 273 138 7 250 506 427 680 1.47e-36 145
Msa0443870 AT4G23940.1 31.206 141 92 2 65 202 537 675 2.43e-11 67.0
Msa0443870 AT2G20140.1 37.143 245 133 4 252 493 187 413 9.69e-36 139
Msa0443870 AT3G15120.1 34.138 290 165 5 252 536 718 986 1.27e-35 143
Msa0443870 AT3G15120.1 39.655 116 62 2 73 188 839 946 6.66e-15 79.0
Msa0443870 AT3G15120.2 34.138 290 165 5 252 536 728 996 1.27e-35 143
Msa0443870 AT3G15120.2 39.655 116 62 2 73 188 849 956 6.55e-15 79.0
Msa0443870 AT3G05530.1 31.907 257 154 3 248 501 166 404 2.54e-35 137
Msa0443870 AT3G05530.1 39.683 126 67 3 77 202 293 409 7.10e-12 67.8
Msa0443870 AT1G09100.1 31.907 257 154 3 248 501 165 403 2.75e-35 137
Msa0443870 AT1G09100.1 38.095 126 69 3 77 202 292 408 1.07e-11 67.4
Msa0443870 AT4G29040.1 36.735 245 134 4 252 493 187 413 3.54e-35 137
Msa0443870 AT3G02450.1 34.432 273 162 3 248 520 329 584 8.21e-35 139
Msa0443870 AT3G02450.1 41.071 112 59 1 77 188 452 556 3.40e-14 75.9
Msa0443870 AT1G05910.1 32.333 300 168 6 235 522 369 645 1.14e-34 140
Msa0443870 AT1G05910.1 34.091 176 80 5 73 241 501 647 3.00e-15 79.7
Msa0443870 AT2G29080.1 35.165 273 146 6 250 518 319 564 1.80e-34 139
Msa0443870 AT1G07510.1 34.432 273 149 6 250 518 324 570 3.03e-34 138
Msa0443870 AT5G64580.1 36.546 249 137 7 250 492 313 546 5.71e-34 137
Msa0443870 AT5G64580.1 41.667 96 54 1 98 191 453 548 1.88e-12 70.5
Msa0443870 AT2G34560.1 40.314 191 105 5 248 433 98 284 1.10e-33 132
Msa0443870 AT2G34560.2 40.314 191 105 5 248 433 107 293 1.14e-33 132
Msa0443870 AT1G80350.1 32.258 310 169 8 241 531 227 514 1.44e-33 134
Msa0443870 AT2G27600.1 37.624 202 114 6 238 431 112 309 8.37e-32 127
Msa0443870 AT1G64110.2 32.558 258 147 7 249 501 517 752 6.33e-31 128
Msa0443870 AT1G64110.4 32.558 258 147 7 249 501 517 752 6.33e-31 128
Msa0443870 AT1G64110.5 32.558 258 147 7 249 501 515 750 6.86e-31 128
Msa0443870 AT1G64110.3 32.558 258 147 7 249 501 515 750 6.86e-31 128
Msa0443870 AT1G64110.1 32.558 258 147 7 249 501 512 747 6.95e-31 128
Msa0443870 AT2G45500.4 32.271 251 140 7 248 492 78 304 2.67e-30 122
Msa0443870 AT2G45500.3 32.271 251 140 7 248 492 78 304 2.67e-30 122
Msa0443870 AT2G45500.5 32.271 251 140 7 248 492 221 447 1.71e-29 122
Msa0443870 AT2G45500.1 32.271 251 140 7 248 492 215 441 1.93e-29 122
Msa0443870 AT2G45500.2 32.271 251 140 7 248 492 211 437 2.14e-29 121
Msa0443870 AT5G52882.1 30.739 257 150 6 250 501 514 747 5.76e-29 122
Msa0443870 AT4G28000.3 31.452 248 142 6 250 492 517 741 6.55e-29 122
Msa0443870 AT4G28000.2 31.452 248 142 6 250 492 517 741 6.99e-29 122
Msa0443870 AT4G28000.1 31.452 248 142 6 250 492 515 739 7.10e-29 122
Msa0443870 AT4G02480.1 33.603 247 140 6 250 492 960 1186 1.02e-28 122
Msa0443870 AT3G19740.1 32.292 288 157 9 250 523 701 964 1.09e-28 121
Msa0443870 AT1G50140.2 31.507 292 154 8 250 523 689 952 2.22e-28 120
Msa0443870 AT1G50140.5 31.507 292 154 8 250 523 689 952 2.22e-28 120
Msa0443870 AT1G50140.3 31.507 292 154 8 250 523 711 974 2.29e-28 120
Msa0443870 AT1G50140.1 31.507 292 154 8 250 523 711 974 2.29e-28 120
Msa0443870 AT1G50140.4 31.507 292 154 8 250 523 711 974 2.29e-28 120
Msa0443870 AT1G02890.1 30.796 289 166 8 210 492 907 1167 2.45e-27 117
Msa0443870 AT5G53540.1 29.150 247 152 5 249 492 83 309 3.21e-27 114
Msa0443870 AT4G27680.1 28.854 253 157 5 249 498 80 312 3.23e-26 111
Msa0443870 AT4G04910.1 29.537 281 165 8 272 533 235 501 4.55e-26 113
Msa0443870 AT4G04910.1 27.740 292 172 9 74 358 343 602 3.30e-16 82.4
Msa0443870 AT4G24860.1 30.924 249 146 7 249 492 816 1043 2.68e-25 111
Msa0443870 AT4G24860.3 30.924 249 146 7 249 492 814 1041 2.82e-25 111
Msa0443870 AT4G24860.2 30.924 249 146 7 249 492 812 1039 3.34e-25 110
Msa0443870 AT4G24860.4 30.924 249 146 7 249 492 789 1016 3.68e-25 110
Msa0443870 AT4G04180.2 32.995 197 121 3 249 436 310 504 5.47e-25 109
Msa0443870 AT4G04180.1 32.995 197 121 3 249 436 315 509 6.43e-25 109
Msa0443870 AT1G45000.2 36.170 141 87 1 249 386 135 275 4.96e-22 97.8
Msa0443870 AT3G04340.1 29.911 224 136 6 248 456 779 996 6.87e-20 94.4
Msa0443870 AT1G62130.1 26.616 263 159 7 250 509 750 981 3.15e-19 92.4
Msa0443870 AT1G62130.2 26.616 263 159 7 250 509 743 974 3.40e-19 92.0
Msa0443870 AT1G79560.3 33.113 151 90 3 289 430 528 676 8.02e-19 90.9
Msa0443870 AT1G79560.1 33.113 151 90 3 289 430 528 676 8.14e-19 90.9
Msa0443870 AT1G79560.2 33.113 151 90 3 289 430 528 676 8.36e-19 90.9
Msa0443870 AT1G02890.2 26.990 289 149 9 210 492 907 1139 7.89e-15 78.6

Find 153 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGGTTATGTTCTTGTAAT+TGG 0.135121 3_3:+16053489 Msa0443870:CDS
CTCCCATTCCTGATGTTAAA+TGG 0.168037 3_3:+16054029 Msa0443870:CDS
TGAAGAGGTGACTATGTTTA+AGG 0.216548 3_3:+16051903 Msa0443870:five_prime_UTR
AGTAGCAGAAATAGGATAAA+AGG 0.221205 3_3:-16052109 None:intergenic
TCTGCTACTGATGTTGTTTC+CGG 0.233945 3_3:+16052123 Msa0443870:CDS
CCATACTCTTTAATCAATTC+AGG 0.237163 3_3:-16051994 None:intergenic
TCAGATTCATCTTTGGATTC+AGG 0.240596 3_3:-16051874 None:intergenic
GGGTATTTCAAAGAGCTTTA+AGG 0.244233 3_3:+16056498 Msa0443870:CDS
AGTTAATTTCATTTATATTA+AGG 0.277050 3_3:+16054943 Msa0443870:CDS
TTGCACGATCAAATAATTTC+TGG 0.277251 3_3:-16055110 None:intergenic
CCCTTCATTAACTGCATTGT+TGG 0.283723 3_3:+16057121 Msa0443870:three_prime_UTR
TTAGATGGACAATGCAATAT+TGG 0.287897 3_3:+16056256 Msa0443870:intron
CCTGAATTGATTAAAGAGTA+TGG 0.294083 3_3:+16051994 Msa0443870:five_prime_UTR
GTACCAAACTACCACCCTTT+TGG 0.298515 3_3:-16056767 None:intergenic
TCATCTTTGGATTCAGGTTC+AGG 0.299581 3_3:-16051868 None:intergenic
TTGGATTCAGGTTCAGGTTC+AGG 0.305950 3_3:-16051862 None:intergenic
ATCAGCATCAGATTCATCTT+TGG 0.313751 3_3:-16051881 None:intergenic
ACAACATCAGTAGCAGAAAT+AGG 0.321942 3_3:-16052117 None:intergenic
TCGTGATTGGTGCAACAAAT+AGG 0.326047 3_3:+16055695 Msa0443870:CDS
AATATCGAAACACGGTCGTC+TGG 0.329062 3_3:-16055874 None:intergenic
ACTTATTTATTTCAGGGACT+TGG 0.329436 3_3:+16054833 Msa0443870:intron
CTCCTAAGGCCAGGTAGATT+TGG 0.334562 3_3:+16055823 Msa0443870:CDS
AGTTTGATCTCCACATTCTA+AGG 0.353429 3_3:+16054086 Msa0443870:CDS
CTCTCCCTCTGTGTCAGATA+TGG 0.355691 3_3:+16056370 Msa0443870:CDS
TCAGGTTCAGGTACAGGTTC+AGG 0.361235 3_3:-16051850 None:intergenic
ATGCTATCATTAGATGATTC+AGG 0.361749 3_3:-16053777 None:intergenic
AATTGCAGTCACAAGCTTGA+TGG 0.362747 3_3:+16053636 Msa0443870:CDS
TTATTGACTCTGCTCTTAGA+AGG 0.364641 3_3:+16053532 Msa0443870:CDS
GCGATTTGATGGCCTGGTCT+AGG 0.365190 3_3:+16056980 Msa0443870:three_prime_UTR
TTTCCAAAAGGGTGGTAGTT+TGG 0.368352 3_3:+16056764 Msa0443870:three_prime_UTR
ACAGATAGAGACACGAATTA+TGG 0.387233 3_3:+16053410 Msa0443870:CDS
TATATGACTAAGCGATTTGA+TGG 0.387625 3_3:+16056969 Msa0443870:three_prime_UTR
GTCATATATACTAAAATGAT+TGG 0.389423 3_3:-16056954 None:intergenic
GGAATCTTGCGTTTCTTTGA+AGG 0.393299 3_3:-16051829 None:intergenic
TATTGAAAGAATATTGAAAC+AGG 0.393576 3_3:+16055551 Msa0443870:CDS
TCAGAGGATAATGGATGAAA+TGG 0.394269 3_3:+16053752 Msa0443870:CDS
TTTGATTGTGAAATTCTTGT+TGG 0.394293 3_3:+16053564 Msa0443870:CDS
GAAACACGGTCGTCTGGGCT+TGG 0.396429 3_3:-16055868 None:intergenic
TTGTAATTGGAGCCACAAAT+AGG 0.399492 3_3:+16053502 Msa0443870:CDS
TGAAATGAAGAAGATAATAA+AGG 0.405113 3_3:+16051939 Msa0443870:five_prime_UTR
GTTACAGGAAGCAATCAAAA+TGG 0.406327 3_3:+16053976 Msa0443870:intron
CTTATTTATTTCAGGGACTT+GGG 0.421134 3_3:+16054834 Msa0443870:intron
AATCAATATGTCTGACTTTG+AGG 0.422995 3_3:+16053860 Msa0443870:CDS
CTCTGCTGAGAAGCACTTGT+TGG 0.423060 3_3:-16051654 None:intergenic
GAGATAATCGGCGATCTCTT+CGG 0.425285 3_3:-16051707 None:intergenic
TTTATTTCAGGGACTTGGGT+TGG 0.428687 3_3:+16054838 Msa0443870:intron
TCCCATTCCTGATGTTAAAT+GGG 0.431232 3_3:+16054030 Msa0443870:CDS
TCAGGTTCAGGTTCAGGTAC+AGG 0.432093 3_3:-16051856 None:intergenic
GGCAGAATTATTAACTTGCA+TGG 0.433439 3_3:+16053431 Msa0443870:CDS
TGCAATATTGGCTGCTCTCA+AGG 0.434797 3_3:+16056268 Msa0443870:CDS
AAATCCACACTGGCATCAAT+AGG 0.435530 3_3:-16055967 None:intergenic
TGGTGCTGATTTAGAAGCTC+TGG 0.439517 3_3:+16053704 Msa0443870:CDS
GTAGAGTGATTATTTCCAAA+AGG 0.440856 3_3:+16056752 Msa0443870:intron
TTACATGGGCCGTCAGGTTG+TGG 0.443184 3_3:+16052042 Msa0443870:exon
TCCTCCCTCGCAGATTCATC+AGG 0.450136 3_3:-16053591 None:intergenic
TGGTGCTGATCTTGCTGCAT+TGG 0.455674 3_3:+16056029 Msa0443870:CDS
GCTGGCATTTCAGAGGATAA+TGG 0.458812 3_3:+16053743 Msa0443870:CDS
ACTATGTTTAAGGATTTAGT+TGG 0.460863 3_3:+16051913 Msa0443870:five_prime_UTR
CGATTTGATGGCCTGGTCTA+GGG 0.460952 3_3:+16056981 Msa0443870:three_prime_UTR
ATGGATGAAGCTTGTTGTTC+AGG 0.461950 3_3:+16053450 Msa0443870:CDS
AGGTCTACGCCGGGATTTGT+TGG 0.464912 3_3:+16053684 Msa0443870:CDS
ACATATTTATTTAGAAGCTC+AGG 0.470056 3_3:-16055066 None:intergenic
TATGGAATGAAACCTAAAAC+AGG 0.470090 3_3:+16052012 Msa0443870:five_prime_UTR
CTTGGGTTGGATCGAGACAC+GGG 0.470267 3_3:+16054851 Msa0443870:CDS
TCCCATTTAACATCAGGAAT+GGG 0.471510 3_3:-16054031 None:intergenic
CGGTCGTCTGGGCTTGGAAG+AGG 0.473988 3_3:-16055862 None:intergenic
TCCAACAATGCAGTTAATGA+AGG 0.477127 3_3:-16057122 None:intergenic
TAACATAACTTTCGCACGGC+GGG 0.477699 3_3:-16057024 None:intergenic
CTTTACGGGCCTCCAGGATG+TGG 0.484069 3_3:+16054881 Msa0443870:CDS
TTCCCATTTAACATCAGGAA+TGG 0.486715 3_3:-16054032 None:intergenic
GTAGCAGAAATAGGATAAAA+GGG 0.487190 3_3:-16052108 None:intergenic
AATAACATCAAGCCTATTTG+TGG 0.488984 3_3:-16053514 None:intergenic
ACATCTTCCCATTTAACATC+AGG 0.493691 3_3:-16054037 None:intergenic
GACTCTGCTCTTAGAAGGCC+TGG 0.493728 3_3:+16053537 Msa0443870:CDS
AGAAATTATTTGATCGTGCA+AGG 0.494982 3_3:+16055112 Msa0443870:CDS
ACAACAAAACATGGCAATGA+AGG 0.495721 3_3:+16055519 Msa0443870:CDS
ATATCGAAACACGGTCGTCT+GGG 0.498852 3_3:-16055873 None:intergenic
GGATGTGGTAAAACACTGAT+TGG 0.499237 3_3:+16054896 Msa0443870:CDS
TGAGATTGATGCAATTGCTT+CGG 0.500293 3_3:+16053367 Msa0443870:CDS
TCTATATCGTTTATTGAACT+AGG 0.500634 3_3:-16057180 None:intergenic
TGCGCTTGATCTTGTAAAAG+AGG 0.505749 3_3:+16054063 Msa0443870:CDS
AAACTTACTCCGATTACAGC+TGG 0.507849 3_3:+16051734 Msa0443870:five_prime_UTR
AACAAATCCCGGCGTAGACC+TGG 0.509745 3_3:-16053682 None:intergenic
TAGAGTGATTATTTCCAAAA+GGG 0.510245 3_3:+16056753 Msa0443870:intron
GGAAGTTCTGATGAAACTAC+TGG 0.510676 3_3:+16053471 Msa0443870:CDS
TACCAAATCTACCTGGCCTT+AGG 0.517273 3_3:-16055825 None:intergenic
GAGCTTCTAAATAAATATGT+TGG 0.517685 3_3:+16055069 Msa0443870:CDS
GACTAAGCGATTTGATGGCC+TGG 0.518109 3_3:+16056974 Msa0443870:three_prime_UTR
AGAGCACTGTCCATCACCTC+AGG 0.521214 3_3:-16055802 None:intergenic
ATAAATCACCTCATAATCCT+CGG 0.521598 3_3:-16054122 None:intergenic
AATATAAATGAAATTAACTC+CGG 0.522746 3_3:-16054939 None:intergenic
GACAGTGCTCTCCTAAGGCC+AGG 0.525290 3_3:+16055814 Msa0443870:CDS
CGATATTGAAAGCTCTTGCA+AGG 0.529803 3_3:+16055890 Msa0443870:CDS
TGATGGACAGTGCTCTCCTA+AGG 0.535742 3_3:+16055809 Msa0443870:CDS
GGTCGTCTGGGCTTGGAAGA+GGG 0.536186 3_3:-16055861 None:intergenic
AAAATATCCCGAGGATTATG+AGG 0.537880 3_3:+16054114 Msa0443870:CDS
AATTTCGAGTATGCATGATA+AGG 0.539319 3_3:-16053617 None:intergenic
TAAATCACCTCATAATCCTC+GGG 0.540757 3_3:-16054121 None:intergenic
GCAGCAAAGGAAGTACTATG+AGG 0.548396 3_3:+16056477 Msa0443870:intron
ACTTGGGTTGGATCGAGACA+CGG 0.550052 3_3:+16054850 Msa0443870:CDS
ACATGGCAATGAAGGTGCAC+TGG 0.551816 3_3:+16055527 Msa0443870:CDS
GAAAGCTCTTGCAAGGCGTA+AGG 0.553269 3_3:+16055897 Msa0443870:CDS
GGAAACTCTTGCAAGGCGTA+AGG 0.553269 3_3:+16055918 Msa0443870:CDS
AAAGCTGGTGGAAGGAGCAT+TGG 0.555698 3_3:+16053811 Msa0443870:CDS
AAATCAGCACCAACAAATCC+CGG 0.557005 3_3:-16053693 None:intergenic
GAGCTTTACGAACTAAATGA+AGG 0.559291 3_3:-16051774 None:intergenic
TGGCTGCTCTCAAGGAGAAG+TGG 0.559449 3_3:+16056276 Msa0443870:CDS
AAAGCTGTTGCAAATGAAGC+CGG 0.559617 3_3:+16054920 Msa0443870:CDS
GGTTGGCAAAGTTGTCGAGC+TGG 0.562479 3_3:+16053725 Msa0443870:CDS
TCCTGATGAATCTGCGAGGG+AGG 0.567717 3_3:+16053590 Msa0443870:CDS
GATAGCGCAGAGCAACGGAC+AGG 0.572248 3_3:+16055667 Msa0443870:CDS
CGAACTAAATGAAGGAGTGG+TGG 0.574607 3_3:-16051766 None:intergenic
AGATGATACTTTGACTGTCA+AGG 0.576655 3_3:+16056316 Msa0443870:CDS
TCATCAATAAAGATAACAGA+TGG 0.577081 3_3:-16053347 None:intergenic
AAAATAGCCAGGTCTACGCC+GGG 0.581172 3_3:+16053675 Msa0443870:CDS
TTGTCGAGCTGGCATTTCAG+AGG 0.597157 3_3:+16053736 Msa0443870:CDS
AGGAGAAGTGGACCGCAACC+AGG 0.600731 3_3:+16056288 Msa0443870:CDS
GAAATTATTTGATCGTGCAA+GGG 0.601004 3_3:+16055113 Msa0443870:CDS
AGTTAGATAGCGCAGAGCAA+CGG 0.604027 3_3:+16055662 Msa0443870:CDS
AGTCCTTCTCTTATTGACGA+AGG 0.605391 3_3:-16054004 None:intergenic
CAACCTTCGTCAATAAGAGA+AGG 0.616521 3_3:+16054001 Msa0443870:CDS
TGAATCTGATGCTGATGAAG+AGG 0.616794 3_3:+16051888 Msa0443870:five_prime_UTR
AGTGATTATTTCCAAAAGGG+TGG 0.620144 3_3:+16056756 Msa0443870:three_prime_UTR
TATGTTGGAGAAAGCGAGCG+TGG 0.622837 3_3:+16055084 Msa0443870:CDS
CAGCAAAGGAAGTACTATGA+GGG 0.626190 3_3:+16056478 Msa0443870:intron
GCATGAGTGATGATGAAAGC+TGG 0.629226 3_3:+16053796 Msa0443870:CDS
ATACTTTGACTGTCAAGGCA+AGG 0.632841 3_3:+16056321 Msa0443870:CDS
CATTCCTGATGAATCTGCGA+GGG 0.633001 3_3:+16053587 Msa0443870:CDS
GCTGATTTAGAAGCTCTGGT+TGG 0.633419 3_3:+16053708 Msa0443870:CDS
GGCGTAAGGAAACTCTTGCA+AGG 0.635393 3_3:+16055911 Msa0443870:CDS
ACACTCGCTCACCCTAGACC+AGG 0.645511 3_3:-16056992 None:intergenic
ATAAGATTACCAAATCTACC+TGG 0.645995 3_3:-16055832 None:intergenic
TGATGATGAAAGCTGGTGGA+AGG 0.646492 3_3:+16053803 Msa0443870:CDS
GGCGTAAGGAAACTCATGCA+AGG 0.647255 3_3:+16055932 Msa0443870:CDS
GATGCTTTGACAACAAAACA+TGG 0.647861 3_3:+16055510 Msa0443870:CDS
TATGTTAGTTGTTTAATGAG+TGG 0.648077 3_3:+16057040 Msa0443870:three_prime_UTR
CAACTAACATAACTTTCGCA+CGG 0.649432 3_3:-16057028 None:intergenic
TTACGAACTAAATGAAGGAG+TGG 0.654195 3_3:-16051769 None:intergenic
GATGTTAAATGGGAAGATGT+TGG 0.654359 3_3:+16054040 Msa0443870:CDS
CCAACAATGCAGTTAATGAA+GGG 0.654634 3_3:-16057121 None:intergenic
TAAGCCTATTGATGCCAGTG+TGG 0.668533 3_3:+16055963 Msa0443870:CDS
TTGGGTTGGATCGAGACACG+GGG 0.675788 3_3:+16054852 Msa0443870:CDS
CTAACATAACTTTCGCACGG+CGG 0.676799 3_3:-16057025 None:intergenic
AAGGCGTATAAAATATCCCG+AGG 0.690244 3_3:+16054105 Msa0443870:CDS
ATTTCACAATCAAAACGACC+AGG 0.691368 3_3:-16053555 None:intergenic
TGAGTGATGATGAAAGCTGG+TGG 0.696080 3_3:+16053799 Msa0443870:CDS
ATAATCGGCGATCTCTTCGG+CGG 0.701154 3_3:-16051704 None:intergenic
GCATTCCTGATGAATCTGCG+AGG 0.702401 3_3:+16053586 Msa0443870:CDS
TATGTCGTTCAAATCCACAC+TGG 0.705516 3_3:-16055977 None:intergenic
CGGAAAGAGAGAATTTACAC+AGG 0.707248 3_3:+16053387 Msa0443870:CDS
CATACCATATCTGACACAGA+GGG 0.719558 3_3:-16056374 None:intergenic
GAGCTTTCAATATCGAAACA+CGG 0.725006 3_3:-16055882 None:intergenic
CCATACCATATCTGACACAG+AGG 0.769635 3_3:-16056375 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAATTTCATTTATATTA+AGG + chr3_3:16054943-16054962 Msa0443870:CDS 10.0%
!!! TATTTCTTTTTCAATTTGTA+TGG - chr3_3:16051598-16051617 None:intergenic 15.0%
!! TTTAAATTCTAAACTAGATA+AGG + chr3_3:16052233-16052252 Msa0443870:intron 15.0%
!!! AGAATTAAGTGATTTTTTTA+GGG + chr3_3:16052864-16052883 Msa0443870:intron 15.0%
!!! AAAATTGATTTTTACATGTT+TGG + chr3_3:16053023-16053042 Msa0443870:intron 15.0%
!! AACAATACAAAAATTCATTA+TGG - chr3_3:16054408-16054427 None:intergenic 15.0%
!! AAAATGATACAAATTCATTA+TGG - chr3_3:16054710-16054729 None:intergenic 15.0%
!! AATATAAATGAAATTAACTC+CGG - chr3_3:16054942-16054961 None:intergenic 15.0%
!! AAATTGAAATCAATAGATTA+TGG - chr3_3:16055224-16055243 None:intergenic 15.0%
!!! TTGAAATTTATTCTGATTTT+TGG + chr3_3:16056453-16056472 Msa0443870:intron 15.0%
!!! TGAAATTTTTTTAATAGTTC+AGG + chr3_3:16057151-16057170 Msa0443870:three_prime_UTR 15.0%
!! TGAAATGAAGAAGATAATAA+AGG + chr3_3:16051939-16051958 Msa0443870:five_prime_UTR 20.0%
!!! TTAATGAGGCTTTTAAAAAA+CGG - chr3_3:16052504-16052523 None:intergenic 20.0%
!! TATGATAAAATAGAACACTA+TGG + chr3_3:16052546-16052565 Msa0443870:intron 20.0%
!!! TAGTGAAATAAAGCTTTTTT+TGG + chr3_3:16052599-16052618 Msa0443870:intron 20.0%
!!! GAGAATTAAGTGATTTTTTT+AGG + chr3_3:16052863-16052882 Msa0443870:intron 20.0%
!! TATCAGATTATTCTAAACTT+TGG + chr3_3:16053240-16053259 Msa0443870:intron 20.0%
!!! GCAAATTTATTTTTTTGTTC+AGG - chr3_3:16053840-16053859 None:intergenic 20.0%
!!! TATATCAAAGGTATAAAATC+CGG - chr3_3:16054242-16054261 None:intergenic 20.0%
!! AATACAAAAATTCATTATGG+TGG - chr3_3:16054405-16054424 None:intergenic 20.0%
!!! AAAATAAATGAAAAGGTGTT+TGG - chr3_3:16054650-16054669 None:intergenic 20.0%
!! TTATTGGACTTATTTATTTC+AGG + chr3_3:16054826-16054845 Msa0443870:intron 20.0%
!! TATTGGACTTATTTATTTCA+GGG + chr3_3:16054827-16054846 Msa0443870:intron 20.0%
!!! ATTGTTTTTGTTGTTCTTTT+AGG + chr3_3:16055041-16055060 Msa0443870:intron 20.0%
!!! TTGTTTTTGTTGTTCTTTTA+GGG + chr3_3:16055042-16055061 Msa0443870:intron 20.0%
!! TTTACTTAACAAAGAATATG+GGG - chr3_3:16055314-16055333 None:intergenic 20.0%
!! GTTTACTTAACAAAGAATAT+GGG - chr3_3:16055315-16055334 None:intergenic 20.0%
!!! ATTTACTTTTTGACATTTTC+AGG + chr3_3:16055485-16055504 Msa0443870:intron 20.0%
!! TATTGAAAGAATATTGAAAC+AGG + chr3_3:16055551-16055570 Msa0443870:CDS 20.0%
!! TAACTAATCATAAAATAGAG+AGG - chr3_3:16055735-16055754 None:intergenic 20.0%
!! AAAGCTTGTAAAAACTTTAA+TGG + chr3_3:16056009-16056028 Msa0443870:CDS 20.0%
!!! AATCTCTTAATTCTTTTTAG+AGG + chr3_3:16056083-16056102 Msa0443870:intron 20.0%
!!! ATCTCTTAATTCTTTTTAGA+GGG + chr3_3:16056084-16056103 Msa0443870:intron 20.0%
!! CTATAATCAAACATGTAAAA+TGG - chr3_3:16056195-16056214 None:intergenic 20.0%
!!! CATTTTACATGTTTGATTAT+AGG + chr3_3:16056193-16056212 Msa0443870:intron 20.0%
!!! ATTTTAATCTACAGAAGAAA+AGG + chr3_3:16056582-16056601 Msa0443870:intron 20.0%
!!! CTACTACCATTTTTTTTTAT+CGG - chr3_3:16056736-16056755 None:intergenic 20.0%
!! GTCATATATACTAAAATGAT+TGG - chr3_3:16056957-16056976 None:intergenic 20.0%
!!! CTTTTTTGAAGAAGTTGAAA+TGG + chr3_3:16051624-16051643 Msa0443870:five_prime_UTR 25.0%
!!! GTAAGTTTTATGGAGATAAT+CGG - chr3_3:16051722-16051741 None:intergenic 25.0%
! ACTATGTTTAAGGATTTAGT+TGG + chr3_3:16051913-16051932 Msa0443870:five_prime_UTR 25.0%
!! TGTAACAAAATTCCTGTTTT+AGG - chr3_3:16052027-16052046 None:intergenic 25.0%
!! AAAACAGGAATTTTGTTACA+TGG + chr3_3:16052027-16052046 Msa0443870:exon 25.0%
!! AAACAGGAATTTTGTTACAT+GGG + chr3_3:16052028-16052047 Msa0443870:exon 25.0%
! AACAAAAACACTATACTTAC+CGG - chr3_3:16052145-16052164 None:intergenic 25.0%
! AGTAAGAAGAGTAGATTAAA+TGG + chr3_3:16052183-16052202 Msa0443870:intron 25.0%
! TCTATAAAAGCGATGAAAAA+AGG + chr3_3:16052426-16052445 Msa0443870:intron 25.0%
! CTATAAAAGCGATGAAAAAA+GGG + chr3_3:16052427-16052446 Msa0443870:intron 25.0%
!!! AAAGCTTTATTTCACTAAGT+GGG - chr3_3:16052596-16052615 None:intergenic 25.0%
!!! AAAAGCTTTATTTCACTAAG+TGG - chr3_3:16052597-16052616 None:intergenic 25.0%
!!! TTTTTGGAATACCAAAGTTT+AGG + chr3_3:16052615-16052634 Msa0443870:intron 25.0%
!!! ATTAAGTGATTTTTTTAGGG+TGG + chr3_3:16052867-16052886 Msa0443870:intron 25.0%
!! AGTTTAGAATAATCTGATAG+TGG - chr3_3:16053239-16053258 None:intergenic 25.0%
! TCATCAATAAAGATAACAGA+TGG - chr3_3:16053350-16053369 None:intergenic 25.0%
! TTTGATTGTGAAATTCTTGT+TGG + chr3_3:16053564-16053583 Msa0443870:CDS 25.0%
! AATATCATATAGTCAAAAGC+CGG + chr3_3:16054220-16054239 Msa0443870:intron 25.0%
!!! AAAATTCATTATGGTGGATT+TGG - chr3_3:16054399-16054418 None:intergenic 25.0%
!!! TTACAAAAATTTGCTGACTA+TGG - chr3_3:16054531-16054550 None:intergenic 25.0%
!!! CTTGTTTTATACGTTTTCTT+TGG + chr3_3:16054744-16054763 Msa0443870:intron 25.0%
!!! GCAAAACTAGTTTTCAAAAA+TGG + chr3_3:16054779-16054798 Msa0443870:intron 25.0%
! AACTATTATTGAGAAATGGA+TGG - chr3_3:16054985-16055004 None:intergenic 25.0%
! TCCATTTCTCAATAATAGTT+TGG + chr3_3:16054985-16055004 Msa0443870:intron 25.0%
! ACCAAACTATTATTGAGAAA+TGG - chr3_3:16054989-16055008 None:intergenic 25.0%
! ACATATTTATTTAGAAGCTC+AGG - chr3_3:16055069-16055088 None:intergenic 25.0%
! GAGCTTCTAAATAAATATGT+TGG + chr3_3:16055069-16055088 Msa0443870:CDS 25.0%
!! TCATCAAGAAAAAGTATACA+TGG - chr3_3:16055147-16055166 None:intergenic 25.0%
!!! ATGTATACTTTTTCTTGATG+AGG + chr3_3:16055146-16055165 Msa0443870:CDS 25.0%
! GGTTTACTTAACAAAGAATA+TGG - chr3_3:16055316-16055335 None:intergenic 25.0%
! TTACATGTTTGATTATAGGT+CGG + chr3_3:16056197-16056216 Msa0443870:intron 25.0%
!! TTTTCTTCTCCATTATTAGA+TGG + chr3_3:16056241-16056260 Msa0443870:intron 25.0%
! TAGTGTCCGATAAAAAAAAA+TGG + chr3_3:16056727-16056746 Msa0443870:intron 25.0%
! TAGAGTGATTATTTCCAAAA+GGG + chr3_3:16056753-16056772 Msa0443870:intron 25.0%
! TATGTTAGTTGTTTAATGAG+TGG + chr3_3:16057040-16057059 Msa0443870:three_prime_UTR 25.0%
! TGTAATCGGAGTAAGTTTTA+TGG - chr3_3:16051732-16051751 None:intergenic 30.0%
CCATACTCTTTAATCAATTC+AGG - chr3_3:16051997-16052016 None:intergenic 30.0%
CCTGAATTGATTAAAGAGTA+TGG + chr3_3:16051994-16052013 Msa0443870:five_prime_UTR 30.0%
TATGGAATGAAACCTAAAAC+AGG + chr3_3:16052012-16052031 Msa0443870:five_prime_UTR 30.0%
GTAGCAGAAATAGGATAAAA+GGG - chr3_3:16052111-16052130 None:intergenic 30.0%
AGTAGCAGAAATAGGATAAA+AGG - chr3_3:16052112-16052131 None:intergenic 30.0%
AAGAAGAGTAGATTAAATGG+AGG + chr3_3:16052186-16052205 Msa0443870:intron 30.0%
AGAAGAGTAGATTAAATGGA+GGG + chr3_3:16052187-16052206 Msa0443870:intron 30.0%
GTAATCAGATAACTAGAGAT+AGG + chr3_3:16052209-16052228 Msa0443870:intron 30.0%
ACCTCAATTGAAAAAATACG+TGG + chr3_3:16052311-16052330 Msa0443870:intron 30.0%
!!! TCCACGTATTTTTTCAATTG+AGG - chr3_3:16052315-16052334 None:intergenic 30.0%
TAAAAGCCTCATTAATGAGT+TGG + chr3_3:16052509-16052528 Msa0443870:intron 30.0%
! TAATGAGTTGGATCGAATTA+TGG + chr3_3:16052521-16052540 Msa0443870:intron 30.0%
AACTCTCACTGCAAAATTTA+AGG - chr3_3:16052746-16052765 None:intergenic 30.0%
AATTATGATTGCTCAAAACG+TGG - chr3_3:16052989-16053008 None:intergenic 30.0%
! GCAATCATAATTGATTCTAG+AGG + chr3_3:16052997-16053016 Msa0443870:intron 30.0%
! CTTCAAGTTAGAATTGATTC+TGG - chr3_3:16053077-16053096 None:intergenic 30.0%
ATCAATTCTAACTTGAAGCT+AGG + chr3_3:16053079-16053098 Msa0443870:intron 30.0%
TGTGTATGTGTTTCTTAACT+AGG + chr3_3:16053272-16053291 Msa0443870:intron 30.0%
GTGTATGTGTTTCTTAACTA+GGG + chr3_3:16053273-16053292 Msa0443870:intron 30.0%
ACTGGTTATGTTCTTGTAAT+TGG + chr3_3:16053489-16053508 Msa0443870:CDS 30.0%
AATAACATCAAGCCTATTTG+TGG - chr3_3:16053517-16053536 None:intergenic 30.0%
! AATTTCGAGTATGCATGATA+AGG - chr3_3:16053620-16053639 None:intergenic 30.0%
ATGCTATCATTAGATGATTC+AGG - chr3_3:16053780-16053799 None:intergenic 30.0%
AATCAATATGTCTGACTTTG+AGG + chr3_3:16053860-16053879 Msa0443870:CDS 30.0%
AACATAGAAAAAGGCTTAGA+GGG - chr3_3:16053959-16053978 None:intergenic 30.0%
TAACATAGAAAAAGGCTTAG+AGG - chr3_3:16053960-16053979 None:intergenic 30.0%
! TAAGCCTTTTTCTATGTTAC+AGG + chr3_3:16053961-16053980 Msa0443870:intron 30.0%
! ATTTTATACGCCTTAGAATG+TGG - chr3_3:16054099-16054118 None:intergenic 30.0%
ATAAATCACCTCATAATCCT+CGG - chr3_3:16054125-16054144 None:intergenic 30.0%
! AAATGAGTTGGGTATATCAA+AGG - chr3_3:16054254-16054273 None:intergenic 30.0%
TTTGATATACCCAACTCATT+TGG + chr3_3:16054253-16054272 Msa0443870:intron 30.0%
AAAACTCAACCAAATGAGTT+GGG - chr3_3:16054265-16054284 None:intergenic 30.0%
AAAAACTCAACCAAATGAGT+TGG - chr3_3:16054266-16054285 None:intergenic 30.0%
TCAAATTGTAATTCTGCTCA+GGG - chr3_3:16054556-16054575 None:intergenic 30.0%
AATAGAACAGGTTGTCAAAA+GGG - chr3_3:16054604-16054623 None:intergenic 30.0%
TAATAGAACAGGTTGTCAAA+AGG - chr3_3:16054605-16054624 None:intergenic 30.0%
ACAACCTGTTCTATTAGTAA+GGG + chr3_3:16054609-16054628 Msa0443870:intron 30.0%
CAGCAGCAAAATAAATGAAA+AGG - chr3_3:16054657-16054676 None:intergenic 30.0%
ATCCAAAGATTGAGTGTTAT+TGG + chr3_3:16054810-16054829 Msa0443870:intron 30.0%
ACTTATTTATTTCAGGGACT+TGG + chr3_3:16054833-16054852 Msa0443870:intron 30.0%
CTTATTTATTTCAGGGACTT+GGG + chr3_3:16054834-16054853 Msa0443870:intron 30.0%
TTGCACGATCAAATAATTTC+TGG - chr3_3:16055113-16055132 None:intergenic 30.0%
AGAAATTATTTGATCGTGCA+AGG + chr3_3:16055112-16055131 Msa0443870:CDS 30.0%
GAAATTATTTGATCGTGCAA+GGG + chr3_3:16055113-16055132 Msa0443870:CDS 30.0%
TTTCTCAATAAGCACGTATA+AGG + chr3_3:16055399-16055418 Msa0443870:intron 30.0%
ATTCAAACTACTAAGCATAC+TGG - chr3_3:16055460-16055479 None:intergenic 30.0%
!! TACTTTTTGACATTTTCAGG+TGG + chr3_3:16055488-16055507 Msa0443870:intron 30.0%
AAAATTGAGTGAATACAGCA+AGG - chr3_3:16055770-16055789 None:intergenic 30.0%
!!! CACTCAATTTTTTGTTTTCC+AGG + chr3_3:16055779-16055798 Msa0443870:intron 30.0%
ATAAGATTACCAAATCTACC+TGG - chr3_3:16055835-16055854 None:intergenic 30.0%
!! TCTTAATTCTTTTTAGAGGG+TGG + chr3_3:16056087-16056106 Msa0443870:intron 30.0%
!! CTTAATTCTTTTTAGAGGGT+GGG + chr3_3:16056088-16056107 Msa0443870:intron 30.0%
TACATGTTTGATTATAGGTC+GGG + chr3_3:16056198-16056217 Msa0443870:intron 30.0%
TTGCATTGTCCATCTAATAA+TGG - chr3_3:16056253-16056272 None:intergenic 30.0%
TTAGATGGACAATGCAATAT+TGG + chr3_3:16056256-16056275 Msa0443870:intron 30.0%
! GGATACAATTTTGTCAATAG+TGG + chr3_3:16056677-16056696 Msa0443870:intron 30.0%
TTGTCAATAGTGGTAGTTTA+TGG + chr3_3:16056687-16056706 Msa0443870:intron 30.0%
GTAGAGTGATTATTTCCAAA+AGG + chr3_3:16056752-16056771 Msa0443870:intron 30.0%
TATATGACTAAGCGATTTGA+TGG + chr3_3:16056969-16056988 Msa0443870:three_prime_UTR 30.0%
! ATTCGTTTTCCAGCTGTAAT+CGG - chr3_3:16051746-16051765 None:intergenic 35.0%
TTACGAACTAAATGAAGGAG+TGG - chr3_3:16051772-16051791 None:intergenic 35.0%
GAGCTTTACGAACTAAATGA+AGG - chr3_3:16051777-16051796 None:intergenic 35.0%
TCAGATTCATCTTTGGATTC+AGG - chr3_3:16051877-16051896 None:intergenic 35.0%
ATCAGCATCAGATTCATCTT+TGG - chr3_3:16051884-16051903 None:intergenic 35.0%
TGAAGAGGTGACTATGTTTA+AGG + chr3_3:16051903-16051922 Msa0443870:five_prime_UTR 35.0%
ACAACATCAGTAGCAGAAAT+AGG - chr3_3:16052120-16052139 None:intergenic 35.0%
! GTCATGAATGACATTTTTCC+CGG + chr3_3:16052348-16052367 Msa0443870:intron 35.0%
AGAAAAAGGCCACAACAAAA+AGG - chr3_3:16052471-16052490 None:intergenic 35.0%
TTCGATCCAACTCATTAATG+AGG - chr3_3:16052518-16052537 None:intergenic 35.0%
TACCAAAGTTTAGGTGACTT+AGG + chr3_3:16052624-16052643 Msa0443870:intron 35.0%
TTACATATTCCTCACCAACA+AGG + chr3_3:16052708-16052727 Msa0443870:intron 35.0%
ATTGTTGAAGCAGTCAATGA+AGG - chr3_3:16052814-16052833 None:intergenic 35.0%
AAATCACACTCGTCTTTGTT+TGG + chr3_3:16052961-16052980 Msa0443870:intron 35.0%
!! GAATAATCTGATAGTGGTTG+TGG - chr3_3:16053233-16053252 None:intergenic 35.0%
!!! CGCTTTTCTCTAAAGCAAAA+GGG + chr3_3:16053318-16053337 Msa0443870:CDS 35.0%
TGAGATTGATGCAATTGCTT+CGG + chr3_3:16053367-16053386 Msa0443870:CDS 35.0%
ACAGATAGAGACACGAATTA+TGG + chr3_3:16053410-16053429 Msa0443870:CDS 35.0%
!! GGCAGAATTATTAACTTGCA+TGG + chr3_3:16053431-16053450 Msa0443870:CDS 35.0%
TTGTAATTGGAGCCACAAAT+AGG + chr3_3:16053502-16053521 Msa0443870:CDS 35.0%
!! TTATTGACTCTGCTCTTAGA+AGG + chr3_3:16053532-16053551 Msa0443870:CDS 35.0%
ATTTCACAATCAAAACGACC+AGG - chr3_3:16053558-16053577 None:intergenic 35.0%
TTGATCTGAGAAAAATAGCC+AGG + chr3_3:16053664-16053683 Msa0443870:CDS 35.0%
!! TCAGAGGATAATGGATGAAA+TGG + chr3_3:16053752-16053771 Msa0443870:CDS 35.0%
ACATAGAAAAAGGCTTAGAG+GGG - chr3_3:16053958-16053977 None:intergenic 35.0%
GCTTCCTGTAACATAGAAAA+AGG - chr3_3:16053968-16053987 None:intergenic 35.0%
GTTACAGGAAGCAATCAAAA+TGG + chr3_3:16053976-16053995 Msa0443870:intron 35.0%
TCCCATTCCTGATGTTAAAT+GGG + chr3_3:16054030-16054049 Msa0443870:CDS 35.0%
TCCCATTTAACATCAGGAAT+GGG - chr3_3:16054034-16054053 None:intergenic 35.0%
TTCCCATTTAACATCAGGAA+TGG - chr3_3:16054035-16054054 None:intergenic 35.0%
ACATCTTCCCATTTAACATC+AGG - chr3_3:16054040-16054059 None:intergenic 35.0%
GATGTTAAATGGGAAGATGT+TGG + chr3_3:16054040-16054059 Msa0443870:CDS 35.0%
AGTTTGATCTCCACATTCTA+AGG + chr3_3:16054086-16054105 Msa0443870:CDS 35.0%
AAAATATCCCGAGGATTATG+AGG + chr3_3:16054114-16054133 Msa0443870:CDS 35.0%
TAAATCACCTCATAATCCTC+GGG - chr3_3:16054124-16054143 None:intergenic 35.0%
CTCAAATTGTAATTCTGCTC+AGG - chr3_3:16054557-16054576 None:intergenic 35.0%
CTGAGCAGAATTACAATTTG+AGG + chr3_3:16054555-16054574 Msa0443870:intron 35.0%
AATTACAATTTGAGGACCAC+TGG + chr3_3:16054563-16054582 Msa0443870:intron 35.0%
GACAACCTGTTCTATTAGTA+AGG + chr3_3:16054608-16054627 Msa0443870:intron 35.0%
CTGTTCTATTAGTAAGGGAT+CGG + chr3_3:16054614-16054633 Msa0443870:intron 35.0%
TGGTGCATTTGAAAATCTAC+TGG - chr3_3:16054690-16054709 None:intergenic 35.0%
GTCCAATAACACTCAATCTT+TGG - chr3_3:16054815-16054834 None:intergenic 35.0%
! CTTTTTCTTGATGAGGTTTG+TGG + chr3_3:16055153-16055172 Msa0443870:intron 35.0%
GATGCTTTGACAACAAAACA+TGG + chr3_3:16055510-16055529 Msa0443870:CDS 35.0%
ACAACAAAACATGGCAATGA+AGG + chr3_3:16055519-16055538 Msa0443870:CDS 35.0%
GTGCAACAAATAGGTAACTT+TGG + chr3_3:16055704-16055723 Msa0443870:intron 35.0%
GAGCTTTCAATATCGAAACA+CGG - chr3_3:16055885-16055904 None:intergenic 35.0%
!! CAAAGTATCATCTTTTGTCC+TGG - chr3_3:16056309-16056328 None:intergenic 35.0%
AGATGATACTTTGACTGTCA+AGG + chr3_3:16056316-16056335 Msa0443870:CDS 35.0%
GGGTATTTCAAAGAGCTTTA+AGG + chr3_3:16056498-16056517 Msa0443870:CDS 35.0%
AATCTACAGAAGAAAAGGTG+AGG + chr3_3:16056587-16056606 Msa0443870:intron 35.0%
CAAAATTGTATCCTTTCTGC+AGG - chr3_3:16056670-16056689 None:intergenic 35.0%
AGTGATTATTTCCAAAAGGG+TGG + chr3_3:16056756-16056775 Msa0443870:three_prime_UTR 35.0%
CAACTAACATAACTTTCGCA+CGG - chr3_3:16057031-16057050 None:intergenic 35.0%
CCAACAATGCAGTTAATGAA+GGG - chr3_3:16057124-16057143 None:intergenic 35.0%
TCCAACAATGCAGTTAATGA+AGG - chr3_3:16057125-16057144 None:intergenic 35.0%
AAACTTACTCCGATTACAGC+TGG + chr3_3:16051734-16051753 Msa0443870:five_prime_UTR 40.0%
GGAATCTTGCGTTTCTTTGA+AGG - chr3_3:16051832-16051851 None:intergenic 40.0%
! TCATCTTTGGATTCAGGTTC+AGG - chr3_3:16051871-16051890 None:intergenic 40.0%
TGAATCTGATGCTGATGAAG+AGG + chr3_3:16051888-16051907 Msa0443870:five_prime_UTR 40.0%
! GTAGTTTTTCCACAACCTGA+CGG - chr3_3:16052054-16052073 None:intergenic 40.0%
!! TCTGCTACTGATGTTGTTTC+CGG + chr3_3:16052123-16052142 Msa0443870:CDS 40.0%
! CTACCTGTACCTTTTTGTTG+TGG + chr3_3:16052459-16052478 Msa0443870:intron 40.0%
ACGGTCTGTTACAGAGAAAA+AGG - chr3_3:16052485-16052504 None:intergenic 40.0%
GACCTAAGTCACCTAAACTT+TGG - chr3_3:16052629-16052648 None:intergenic 40.0%
TTAGCGTTCTTTGAGTCTTG+AGG - chr3_3:16052679-16052698 None:intergenic 40.0%
TTGAAGCAGTCAATGAAGGT+TGG - chr3_3:16052810-16052829 None:intergenic 40.0%
TTCTCTCTCAGTCACGTTAT+CGG - chr3_3:16052926-16052945 None:intergenic 40.0%
!! TAATCTGATAGTGGTTGTGG+AGG - chr3_3:16053230-16053249 None:intergenic 40.0%
!!! GCGCTTTTCTCTAAAGCAAA+AGG + chr3_3:16053317-16053336 Msa0443870:CDS 40.0%
CGGAAAGAGAGAATTTACAC+AGG + chr3_3:16053387-16053406 Msa0443870:CDS 40.0%
!! ATGGATGAAGCTTGTTGTTC+AGG + chr3_3:16053450-16053469 Msa0443870:CDS 40.0%
! GGAAGTTCTGATGAAACTAC+TGG + chr3_3:16053471-16053490 Msa0443870:CDS 40.0%
AATTGCAGTCACAAGCTTGA+TGG + chr3_3:16053636-16053655 Msa0443870:CDS 40.0%
AAATCAGCACCAACAAATCC+CGG - chr3_3:16053696-16053715 None:intergenic 40.0%
CAACCTTCGTCAATAAGAGA+AGG + chr3_3:16054001-16054020 Msa0443870:CDS 40.0%
AGTCCTTCTCTTATTGACGA+AGG - chr3_3:16054007-16054026 None:intergenic 40.0%
CTCCCATTCCTGATGTTAAA+TGG + chr3_3:16054029-16054048 Msa0443870:CDS 40.0%
TGCGCTTGATCTTGTAAAAG+AGG + chr3_3:16054063-16054082 Msa0443870:CDS 40.0%
AAGGCGTATAAAATATCCCG+AGG + chr3_3:16054105-16054124 Msa0443870:CDS 40.0%
TTCCTAAATCACAGCAGTCA+TGG + chr3_3:16054187-16054206 Msa0443870:intron 40.0%
TCCTAAATCACAGCAGTCAT+GGG + chr3_3:16054188-16054207 Msa0443870:intron 40.0%
! GGTGGATTTGGTAATCTTCT+TGG - chr3_3:16054387-16054406 None:intergenic 40.0%
GCTGACTATGGAAACAGATT+TGG - chr3_3:16054519-16054538 None:intergenic 40.0%
CGATCCCTTACTAATAGAAC+AGG - chr3_3:16054616-16054635 None:intergenic 40.0%
TTTATTTCAGGGACTTGGGT+TGG + chr3_3:16054838-16054857 Msa0443870:intron 40.0%
! ATCAGTGTTTTACCACATCC+TGG - chr3_3:16054896-16054915 None:intergenic 40.0%
GGATGTGGTAAAACACTGAT+TGG + chr3_3:16054896-16054915 Msa0443870:CDS 40.0%
AAAGCTGTTGCAAATGAAGC+CGG + chr3_3:16054920-16054939 Msa0443870:CDS 40.0%
! AAGCACGTATAAGGCTTGTT+TGG + chr3_3:16055408-16055427 Msa0443870:intron 40.0%
TCGTGATTGGTGCAACAAAT+AGG + chr3_3:16055695-16055714 Msa0443870:CDS 40.0%
!!! TTTTTTGTTTTCCAGGCCTG+AGG + chr3_3:16055786-16055805 Msa0443870:intron 40.0%
CGATATTGAAAGCTCTTGCA+AGG + chr3_3:16055890-16055909 Msa0443870:CDS 40.0%
AAATCCACACTGGCATCAAT+AGG - chr3_3:16055970-16055989 None:intergenic 40.0%
TATGTCGTTCAAATCCACAC+TGG - chr3_3:16055980-16055999 None:intergenic 40.0%
!!! TTGTCTCTGCGCTCTTTTTT+TGG + chr3_3:16056053-16056072 Msa0443870:intron 40.0%
! ATCATCTTTTGTCCTGGTTG+CGG - chr3_3:16056303-16056322 None:intergenic 40.0%
ATACTTTGACTGTCAAGGCA+AGG + chr3_3:16056321-16056340 Msa0443870:CDS 40.0%
CATACCATATCTGACACAGA+GGG - chr3_3:16056377-16056396 None:intergenic 40.0%
!! CAGCAAAGGAAGTACTATGA+GGG + chr3_3:16056478-16056497 Msa0443870:intron 40.0%
TAGTGGTAGTTTATGGCTCA+CGG + chr3_3:16056694-16056713 Msa0443870:intron 40.0%
TTTCCAAAAGGGTGGTAGTT+TGG + chr3_3:16056764-16056783 Msa0443870:three_prime_UTR 40.0%
CCCTTCATTAACTGCATTGT+TGG + chr3_3:16057121-16057140 Msa0443870:three_prime_UTR 40.0%
GAGATAATCGGCGATCTCTT+CGG - chr3_3:16051710-16051729 None:intergenic 45.0%
CGAACTAAATGAAGGAGTGG+TGG - chr3_3:16051769-16051788 None:intergenic 45.0%
! TTGGATTCAGGTTCAGGTTC+AGG - chr3_3:16051865-16051884 None:intergenic 45.0%
! ATTTTGTTACATGGGCCGTC+AGG + chr3_3:16052036-16052055 Msa0443870:exon 45.0%
! GACATTTTTCCCGGTCGTAA+AGG + chr3_3:16052357-16052376 Msa0443870:intron 45.0%
TGACGAAAGACCTTTACGAC+CGG - chr3_3:16052370-16052389 None:intergenic 45.0%
GTCGTAAAGGTCTTTCGTCA+CGG + chr3_3:16052370-16052389 Msa0443870:intron 45.0%
! AGGCCACAACAAAAAGGTAC+AGG - chr3_3:16052465-16052484 None:intergenic 45.0%
TTAGGTGACTTAGGTCCTCA+TGG + chr3_3:16052633-16052652 Msa0443870:intron 45.0%
GACTCAAAGAACGCTAACAG+AGG + chr3_3:16052682-16052701 Msa0443870:intron 45.0%
ACATTACGACCTTGTTGGTG+AGG - chr3_3:16052720-16052739 None:intergenic 45.0%
CACCAACAAGGTCGTAATGT+TGG + chr3_3:16052720-16052739 Msa0443870:intron 45.0%
CACGTTATCGGACTACATGT+TGG - chr3_3:16052914-16052933 None:intergenic 45.0%
CATTCCTGATGAATCTGCGA+GGG + chr3_3:16053587-16053606 Msa0443870:CDS 45.0%
AAAAATAGCCAGGTCTACGC+CGG + chr3_3:16053674-16053693 Msa0443870:CDS 45.0%
!! TGGTGCTGATTTAGAAGCTC+TGG + chr3_3:16053704-16053723 Msa0443870:CDS 45.0%
! GCTGATTTAGAAGCTCTGGT+TGG + chr3_3:16053708-16053727 Msa0443870:CDS 45.0%
GCTGGCATTTCAGAGGATAA+TGG + chr3_3:16053743-16053762 Msa0443870:CDS 45.0%
! GCATGAGTGATGATGAAAGC+TGG + chr3_3:16053796-16053815 Msa0443870:CDS 45.0%
! TGAGTGATGATGAAAGCTGG+TGG + chr3_3:16053799-16053818 Msa0443870:CDS 45.0%
! TGATGATGAAAGCTGGTGGA+AGG + chr3_3:16053803-16053822 Msa0443870:CDS 45.0%
TCCCATGACTGCTGTGATTT+AGG - chr3_3:16054192-16054211 None:intergenic 45.0%
GGTAATCTTCTTGGCTGTAC+AGG - chr3_3:16054378-16054397 None:intergenic 45.0%
GTCAGTGTTATACTCACCAG+TGG - chr3_3:16054582-16054601 None:intergenic 45.0%
! GACACGGGGTTTTTGCTTTA+CGG + chr3_3:16054866-16054885 Msa0443870:CDS 45.0%
! ACACGGGGTTTTTGCTTTAC+GGG + chr3_3:16054867-16054886 Msa0443870:CDS 45.0%
! AGTGTTTTACCACATCCTGG+AGG - chr3_3:16054893-16054912 None:intergenic 45.0%
ACAATGAACTCAGCACATGC+AGG - chr3_3:16055352-16055371 None:intergenic 45.0%
TGTGCTGAGTTCATTGTGCT+TGG + chr3_3:16055355-16055374 Msa0443870:intron 45.0%
AGTTAGATAGCGCAGAGCAA+CGG + chr3_3:16055662-16055681 Msa0443870:CDS 45.0%
! TACCAAATCTACCTGGCCTT+AGG - chr3_3:16055828-16055847 None:intergenic 45.0%
ATATCGAAACACGGTCGTCT+GGG - chr3_3:16055876-16055895 None:intergenic 45.0%
AATATCGAAACACGGTCGTC+TGG - chr3_3:16055877-16055896 None:intergenic 45.0%
TAAGCCTATTGATGCCAGTG+TGG + chr3_3:16055963-16055982 Msa0443870:CDS 45.0%
AAGGTTGTTGCCATGTGACA+TGG + chr3_3:16056126-16056145 Msa0443870:intron 45.0%
! TGCAATATTGGCTGCTCTCA+AGG + chr3_3:16056268-16056287 Msa0443870:CDS 45.0%
!! TGTCAAGGCAAGGCATTTTG+AGG + chr3_3:16056331-16056350 Msa0443870:CDS 45.0%
CCATACCATATCTGACACAG+AGG - chr3_3:16056378-16056397 None:intergenic 45.0%
CCTCTGTGTCAGATATGGTA+TGG + chr3_3:16056375-16056394 Msa0443870:intron 45.0%
!!! TCTGATTTTTGGCGCAGCAA+AGG + chr3_3:16056464-16056483 Msa0443870:intron 45.0%
!! GCAGCAAAGGAAGTACTATG+AGG + chr3_3:16056477-16056496 Msa0443870:intron 45.0%
! AGTGCGTTTTTCCTGCAGAA+AGG + chr3_3:16056656-16056675 Msa0443870:intron 45.0%
TAGTTTATGGCTCACGGCAT+GGG + chr3_3:16056700-16056719 Msa0443870:intron 45.0%
! GTACCAAACTACCACCCTTT+TGG - chr3_3:16056770-16056789 None:intergenic 45.0%
TAACATAACTTTCGCACGGC+GGG - chr3_3:16057027-16057046 None:intergenic 45.0%
CTAACATAACTTTCGCACGG+CGG - chr3_3:16057028-16057047 None:intergenic 45.0%
AGAAGAGACACGTAAGGTGA+GGG - chr3_3:16057094-16057113 None:intergenic 45.0%
AAGAAGAGACACGTAAGGTG+AGG - chr3_3:16057095-16057114 None:intergenic 45.0%
CGAGAAAGAAGAGACACGTA+AGG - chr3_3:16057100-16057119 None:intergenic 45.0%
!! ATAACTAATAATAATTAAAA+AGG - chr3_3:16053910-16053929 None:intergenic 5.0%
!! CTCTGCTGAGAAGCACTTGT+TGG - chr3_3:16051657-16051676 None:intergenic 50.0%
ATAATCGGCGATCTCTTCGG+CGG - chr3_3:16051707-16051726 None:intergenic 50.0%
TCAGGTTCAGGTACAGGTTC+AGG - chr3_3:16051853-16051872 None:intergenic 50.0%
! TCAGGTTCAGGTTCAGGTAC+AGG - chr3_3:16051859-16051878 None:intergenic 50.0%
GACGAAAGACCTTTACGACC+GGG - chr3_3:16052369-16052388 None:intergenic 50.0%
TGGCTCACCAAGGTTAGGAT+AGG + chr3_3:16052653-16052672 Msa0443870:intron 50.0%
CTTGAGGCCTATCCTAACCT+TGG - chr3_3:16052663-16052682 None:intergenic 50.0%
GGCCAACATTACGACCTTGT+TGG - chr3_3:16052725-16052744 None:intergenic 50.0%
! TCAATGAAGGTTGGCCCAGT+CGG - chr3_3:16052801-16052820 None:intergenic 50.0%
GCATTCCTGATGAATCTGCG+AGG + chr3_3:16053586-16053605 Msa0443870:CDS 50.0%
AAAATAGCCAGGTCTACGCC+GGG + chr3_3:16053675-16053694 Msa0443870:CDS 50.0%
TTGTCGAGCTGGCATTTCAG+AGG + chr3_3:16053736-16053755 Msa0443870:CDS 50.0%
! AAAGCTGGTGGAAGGAGCAT+TGG + chr3_3:16053811-16053830 Msa0443870:CDS 50.0%
!! ACTTGGGTTGGATCGAGACA+CGG + chr3_3:16054850-16054869 Msa0443870:CDS 50.0%
! TTTTTGCTTTACGGGCCTCC+AGG + chr3_3:16054875-16054894 Msa0443870:CDS 50.0%
TATGTTGGAGAAAGCGAGCG+TGG + chr3_3:16055084-16055103 Msa0443870:CDS 50.0%
CATGCAGGAGATGGTGAAGA+AGG - chr3_3:16055337-16055356 None:intergenic 50.0%
AACTCAGCACATGCAGGAGA+TGG - chr3_3:16055346-16055365 None:intergenic 50.0%
! ACATGGCAATGAAGGTGCAC+TGG + chr3_3:16055527-16055546 Msa0443870:CDS 50.0%
! CGGACAGGTGTTTTCGTGAT+TGG + chr3_3:16055682-16055701 Msa0443870:CDS 50.0%
! TGATGGACAGTGCTCTCCTA+AGG + chr3_3:16055809-16055828 Msa0443870:CDS 50.0%
CTCCTAAGGCCAGGTAGATT+TGG + chr3_3:16055823-16055842 Msa0443870:CDS 50.0%
GAAAGCTCTTGCAAGGCGTA+AGG + chr3_3:16055897-16055916 Msa0443870:CDS 50.0%
GGCGTAAGGAAACTCTTGCA+AGG + chr3_3:16055911-16055930 Msa0443870:CDS 50.0%
GGAAACTCTTGCAAGGCGTA+AGG + chr3_3:16055918-16055937 Msa0443870:CDS 50.0%
GGCGTAAGGAAACTCATGCA+AGG + chr3_3:16055932-16055951 Msa0443870:CDS 50.0%
!! TGGTGCTGATCTTGCTGCAT+TGG + chr3_3:16056029-16056048 Msa0443870:CDS 50.0%
!! TCTTTTTAGAGGGTGGGCCT+TGG + chr3_3:16056094-16056113 Msa0443870:intron 50.0%
ACAACCTTACTGTTGCGCCA+AGG - chr3_3:16056114-16056133 None:intergenic 50.0%
GTTGTTGCCATGTGACATGG+CGG + chr3_3:16056129-16056148 Msa0443870:intron 50.0%
CCTATAACCGCCATGTCACA+TGG - chr3_3:16056139-16056158 None:intergenic 50.0%
CCATGTGACATGGCGGTTAT+AGG + chr3_3:16056136-16056155 Msa0443870:intron 50.0%
CTCTCCCTCTGTGTCAGATA+TGG + chr3_3:16056370-16056389 Msa0443870:CDS 50.0%
GTAGTTTATGGCTCACGGCA+TGG + chr3_3:16056699-16056718 Msa0443870:intron 50.0%
! GACTAAGCGATTTGATGGCC+TGG + chr3_3:16056974-16056993 Msa0443870:three_prime_UTR 50.0%
! CGATTTGATGGCCTGGTCTA+GGG + chr3_3:16056981-16057000 Msa0443870:three_prime_UTR 50.0%
! TTACATGGGCCGTCAGGTTG+TGG + chr3_3:16052042-16052061 Msa0443870:exon 55.0%
TAGGTCCTCATGGCTCACCA+AGG + chr3_3:16052643-16052662 Msa0443870:intron 55.0%
CCTAACCTTGGTGAGCCATG+AGG - chr3_3:16052651-16052670 None:intergenic 55.0%
CCTCATGGCTCACCAAGGTT+AGG + chr3_3:16052648-16052667 Msa0443870:intron 55.0%
GGCAAGCGCAAGCTCTGTAA+GGG - chr3_3:16052780-16052799 None:intergenic 55.0%
GACTCTGCTCTTAGAAGGCC+TGG + chr3_3:16053537-16053556 Msa0443870:CDS 55.0%
TCCTGATGAATCTGCGAGGG+AGG + chr3_3:16053590-16053609 Msa0443870:CDS 55.0%
TCCTCCCTCGCAGATTCATC+AGG - chr3_3:16053594-16053613 None:intergenic 55.0%
AACAAATCCCGGCGTAGACC+TGG - chr3_3:16053685-16053704 None:intergenic 55.0%
AGGTCTACGCCGGGATTTGT+TGG + chr3_3:16053684-16053703 Msa0443870:CDS 55.0%
GGTTGGCAAAGTTGTCGAGC+TGG + chr3_3:16053725-16053744 Msa0443870:CDS 55.0%
!! CTTGGGTTGGATCGAGACAC+GGG + chr3_3:16054851-16054870 Msa0443870:CDS 55.0%
!! TTGGGTTGGATCGAGACACG+GGG + chr3_3:16054852-16054871 Msa0443870:CDS 55.0%
! GTTTTCCAGGCCTGAGGTGA+TGG + chr3_3:16055792-16055811 Msa0443870:intron 55.0%
!! AGAGCACTGTCCATCACCTC+AGG - chr3_3:16055805-16055824 None:intergenic 55.0%
TGGCTGCTCTCAAGGAGAAG+TGG + chr3_3:16056276-16056295 Msa0443870:CDS 55.0%
! GCGATTTGATGGCCTGGTCT+AGG + chr3_3:16056980-16056999 Msa0443870:three_prime_UTR 55.0%
CGGCAAGCGCAAGCTCTGTA+AGG - chr3_3:16052781-16052800 None:intergenic 60.0%
! AGAGCTTGCGCTTGCCGACT+GGG + chr3_3:16052784-16052803 Msa0443870:intron 60.0%
CTTTACGGGCCTCCAGGATG+TGG + chr3_3:16054881-16054900 Msa0443870:CDS 60.0%
GATAGCGCAGAGCAACGGAC+AGG + chr3_3:16055667-16055686 Msa0443870:CDS 60.0%
ACTGTCCATCACCTCAGGCC+TGG - chr3_3:16055800-16055819 None:intergenic 60.0%
GACAGTGCTCTCCTAAGGCC+AGG + chr3_3:16055814-16055833 Msa0443870:CDS 60.0%
GGTCGTCTGGGCTTGGAAGA+GGG - chr3_3:16055864-16055883 None:intergenic 60.0%
GAAACACGGTCGTCTGGGCT+TGG - chr3_3:16055871-16055890 None:intergenic 60.0%
TGGGCCTTGGCGCAACAGTA+AGG + chr3_3:16056107-16056126 Msa0443870:intron 60.0%
AGGAGAAGTGGACCGCAACC+AGG + chr3_3:16056288-16056307 Msa0443870:CDS 60.0%
ACACTCGCTCACCCTAGACC+AGG - chr3_3:16056995-16057014 None:intergenic 60.0%
CAGAGCTTGCGCTTGCCGAC+TGG + chr3_3:16052783-16052802 Msa0443870:intron 65.0%
CGGTCGTCTGGGCTTGGAAG+AGG - chr3_3:16055865-16055884 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 16051578 16057201 16051578 ID=Msa0443870;Name=Msa0443870
chr3_3 mRNA 16051578 16057201 16051578 ID=Msa0443870-mRNA-1;Parent=Msa0443870;Name=Msa0443870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=468|1|1|1|0.66|0.69|13|338|540
chr3_3 exon 16051578 16052144 16051578 ID=Msa0443870-mRNA-1:exon:3366;Parent=Msa0443870-mRNA-1
chr3_3 exon 16053294 16053881 16053294 ID=Msa0443870-mRNA-1:exon:3367;Parent=Msa0443870-mRNA-1
chr3_3 exon 16053983 16054135 16053983 ID=Msa0443870-mRNA-1:exon:3368;Parent=Msa0443870-mRNA-1
chr3_3 exon 16054848 16054964 16054848 ID=Msa0443870-mRNA-1:exon:3369;Parent=Msa0443870-mRNA-1
chr3_3 exon 16055063 16055167 16055063 ID=Msa0443870-mRNA-1:exon:3370;Parent=Msa0443870-mRNA-1
chr3_3 exon 16055507 16055572 16055507 ID=Msa0443870-mRNA-1:exon:3371;Parent=Msa0443870-mRNA-1
chr3_3 exon 16055652 16055716 16055652 ID=Msa0443870-mRNA-1:exon:3372;Parent=Msa0443870-mRNA-1
chr3_3 exon 16055801 16056050 16055801 ID=Msa0443870-mRNA-1:exon:3373;Parent=Msa0443870-mRNA-1
chr3_3 exon 16056260 16056391 16056260 ID=Msa0443870-mRNA-1:exon:3374;Parent=Msa0443870-mRNA-1
chr3_3 exon 16056481 16056574 16056481 ID=Msa0443870-mRNA-1:exon:3375;Parent=Msa0443870-mRNA-1
chr3_3 exon 16056756 16056830 16056756 ID=Msa0443870-mRNA-1:exon:3376;Parent=Msa0443870-mRNA-1
chr3_3 exon 16056931 16057065 16056931 ID=Msa0443870-mRNA-1:exon:3377;Parent=Msa0443870-mRNA-1
chr3_3 exon 16057120 16057201 16057120 ID=Msa0443870-mRNA-1:exon:3378;Parent=Msa0443870-mRNA-1
chr3_3 five_prime_UTR 16051578 16052045 16051578 ID=Msa0443870-mRNA-1:five_prime_utr;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16052046 16052144 16052046 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16053294 16053881 16053294 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16053983 16054135 16053983 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16054848 16054964 16054848 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16055063 16055167 16055063 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16055507 16055572 16055507 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16055652 16055716 16055652 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16055801 16056050 16055801 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16056260 16056391 16056260 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 CDS 16056481 16056528 16056481 ID=Msa0443870-mRNA-1:cds;Parent=Msa0443870-mRNA-1
chr3_3 three_prime_UTR 16056529 16056574 16056529 ID=Msa0443870-mRNA-1:three_prime_utr;Parent=Msa0443870-mRNA-1
chr3_3 three_prime_UTR 16056756 16056830 16056756 ID=Msa0443870-mRNA-1:three_prime_utr;Parent=Msa0443870-mRNA-1
chr3_3 three_prime_UTR 16056931 16057065 16056931 ID=Msa0443870-mRNA-1:three_prime_utr;Parent=Msa0443870-mRNA-1
chr3_3 three_prime_UTR 16057120 16057201 16057120 ID=Msa0443870-mRNA-1:three_prime_utr;Parent=Msa0443870-mRNA-1
Gene Sequence

>Msa0443870

ATGGGCCGTCAGGTTGTGGAAAAACTACACTTGCTTATGCAATTGCTAATGAAGCTGAAGTTCCCTTTTATCCTATTTCTGCTACTGATGTTGTTTCCGGGAGATCTGAAGAAAACATTGCAGCGCTTTTCTCTAAAGCAAAAGGGACTGCTCCATCTGTTATCTTTATTGATGAGATTGATGCAATTGCTTCGGAAAGAGAGAATTTACACAGGACAGATAGAGACACGAATTATGGCAGAATTATTAACTTGCATGGATGAAGCTTGTTGTTCAGGAAGTTCTGATGAAACTACTGGTTATGTTCTTGTAATTGGAGCCACAAATAGGCTTGATGTTATTGACTCTGCTCTTAGAAGGCCTGGTCGTTTTGATTGTGAAATTCTTGTTGGCATTCCTGATGAATCTGCGAGGGAGGAGATCCTTATCATGCATACTCGAAATTGCAGTCACAAGCTTGATGGTTCAGTTGATCTGAGAAAAATAGCCAGGTCTACGCCGGGATTTGTTGGTGCTGATTTAGAAGCTCTGGTTGGCAAAGTTGTCGAGCTGGCATTTCAGAGGATAATGGATGAAATGGAACCTGAATCATCTAATGATAGCATGAGTGATGATGAAAGCTGGTGGAAGGAGCATTGGTCGCCTGAACAAAAAAATAAATTTGCAATCAATATGTCTGACTTTGAGGAAGCAATCAAAATGGTACAACCTTCGTCAATAAGAGAAGGACTCTCTCCCATTCCTGATGTTAAATGGGAAGATGTTGGTGCGCTTGATCTTGTAAAAGAGGAGTTTGATCTCCACATTCTAAGGCGTATAAAATATCCCGAGGATTATGAGGGACTTGGGTTGGATCGAGACACGGGGTTTTTGCTTTACGGGCCTCCAGGATGTGGTAAAACACTGATTGGCAAAGCTGTTGCAAATGAAGCCGGAGTTAATTTCATTTATATTAAGGGTCCTGAGCTTCTAAATAAATATGTTGGAGAAAGCGAGCGTGGAGTCCAGAAATTATTTGATCGTGCAAGGGCATGTGCACCATGTATACTTTTTCTTGATGAGGTGGATGCTTTGACAACAAAACATGGCAATGAAGGTGCACTGGTTATTGAAAGAATATTGAAACAGTTGCTTATTGAGTTAGATAGCGCAGAGCAACGGACAGGTGTTTTCGTGATTGGTGCAACAAATAGGCCTGAGGTGATGGACAGTGCTCTCCTAAGGCCAGGTAGATTTGGTAATCTTATTCATATCCCTCTTCCAAGCCCAGACGACCGTGTTTCGATATTGAAAGCTCTTGCAAGGCGTAAGGAAACTCTTGCAAGGCGTAAGGAAACTCATGCAAGGTTTAAGCTTAAGCCTATTGATGCCAGTGTGGATTTGAACGACATAGCAAGAATGAAAGCTTGTAAAAACTTTAATGGTGCTGATCTTGCTGCATTGATGGACAATGCAATATTGGCTGCTCTCAAGGAGAAGTGGACCGCAACCAGGACAAAAGATGATACTTTGACTGTCAAGGCAAGGCATTTTGAGGTAGCACTGACTAAAGTCTCTCCCTCTGTGTCAGATATGCAAAGGAAGTACTATGAGGGTATTTCAAAGAGCTTTAAGGCAAAATGA
Protein sequence

>Msa0443870

MGRQVVEKLHLLMQLLMKLKFPFILFLLLMLFPGDLKKTLQRFSLKQKGLLHLLSLLMRLMQLLRKERIYTGQIETRIMAELLTCMDEACCSGSSDETTGYVLVIGATNRLDVIDSALRRPGRFDCEILVGIPDESAREEILIMHTRNCSHKLDGSVDLRKIARSTPGFVGADLEALVGKVVELAFQRIMDEMEPESSNDSMSDDESWWKEHWSPEQKNKFAINMSDFEEAIKMVQPSSIREGLSPIPDVKWEDVGALDLVKEEFDLHILRRIKYPEDYEGLGLDRDTGFLLYGPPGCGKTLIGKAVANEAGVNFIYIKGPELLNKYVGESERGVQKLFDRARACAPCILFLDEVDALTTKHGNEGALVIERILKQLLIELDSAEQRTGVFVIGATNRPEVMDSALLRPGRFGNLIHIPLPSPDDRVSILKALARRKETLARRKETHARFKLKPIDASVDLNDIARMKACKNFNGADLAALMDNAILAALKEKWTATRTKDDTLTVKARHFEVALTKVSPSVSDMQRKYYEGISKSFKAK*