AlfalfaGEDB | Msa0575660

M. sativa cultivar zhongmu-4 / Msa0575660

KEGG: -
GO: GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0035556 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
PFAM: PF14381.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575660	XP_003631089.3	97.951	1025	18	2	1	1025	1	1022	0.0	2060

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575660	sp\|Q9C9U5\|SIS8_ARATH	61.300	1031	327	16	1	1008	33	1014	0.0	1127

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575660	Q1SMZ9	97.951	1025	18	2	1	1025	1	1022	0.0	2060

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014570	Msa0575660	0.829242	5.745064e-55	-8.615850e-47
Msa0036140	Msa0575660	0.802534	5.361442e-49	-8.615850e-47
Msa0043500	Msa0575660	0.822308	2.538970e-53	-8.615850e-47
Msa0043560	Msa0575660	0.806615	7.546509e-50	-8.615850e-47
Msa0045790	Msa0575660	0.815196	1.046319e-51	-8.615850e-47
Msa0046160	Msa0575660	0.813859	2.068271e-51	-8.615850e-47
Msa0056450	Msa0575660	0.802340	5.878228e-49	-8.615850e-47
Msa0089980	Msa0575660	0.805683	1.185637e-49	-8.615850e-47
Msa0090010	Msa0575660	0.804981	1.664176e-49	-8.615850e-47
Msa0142460	Msa0575660	0.813885	2.041085e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575660	MtrunA17_Chr8g0392871	97.951	1025	18	2	1	1025	1	1022	0.0	2060
Msa0575660	MtrunA17_Chr6g0482711	65.988	1032	252	18	1	1024	1	941	0.0	1170
Msa0575660	MtrunA17_Chr1g0191171	69.932	296	84	2	714	1004	656	951	1.47e-144	456
Msa0575660	MtrunA17_Chr1g0191171	42.071	309	156	6	107	398	89	391	7.93e-60	222
Msa0575660	MtrunA17_Chr1g0151541	62.346	324	104	3	699	1004	605	928	9.99e-136	432
Msa0575660	MtrunA17_Chr1g0151541	40.323	434	199	17	107	521	82	474	3.88e-72	258
Msa0575660	MtrunA17_Chr1g0179331	62.044	274	102	1	731	1002	544	817	5.30e-115	374
Msa0575660	MtrunA17_Chr1g0179331	34.314	306	157	9	147	439	179	453	3.05e-37	151
Msa0575660	MtrunA17_Chr3g0132791	62.030	266	99	1	736	999	647	912	1.69e-109	362
Msa0575660	MtrunA17_Chr3g0132791	34.164	281	155	11	105	369	193	459	3.15e-30	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0575660	AT1G73660.1	61.300	1031	327	16	1	1008	33	1014	0.0	1127
Msa0575660	AT1G18160.1	59.056	1038	340	21	1	1011	5	984	0.0	1058
Msa0575660	AT1G18160.2	59.145	1006	326	21	1	979	5	952	0.0	1025
Msa0575660	AT5G11850.1	63.063	333	107	2	666	998	549	865	1.34e-146	459
Msa0575660	AT5G11850.1	37.986	437	237	10	106	530	91	505	4.62e-78	274
Msa0575660	AT1G08720.1	70.357	280	81	1	720	999	649	926	3.04e-139	442
Msa0575660	AT1G08720.1	40.483	373	167	11	1	357	1	334	3.02e-60	223
Msa0575660	AT1G08720.2	71.923	260	71	1	720	979	649	906	1.93e-130	418
Msa0575660	AT1G08720.2	40.483	373	167	11	1	357	1	334	2.67e-60	223
Msa0575660	AT5G03730.2	64.945	271	93	1	731	999	540	810	2.92e-117	380

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Find 297 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAACCCTCGGTAGCA+TGG	0.552791	4_1:+79569888	Msa0575660:CDS
AAACTTGAGCAAAAGGCCAT+GGG	0.519528	4_1:+79569715	Msa0575660:CDS
AAAGTATGTCAAGAGCATGG+AGG	0.762416	4_1:+79569848	Msa0575660:CDS
AAATCACGATGCACTATCAC+TGG	0.526454	4_1:-79573506	None:intergenic
AACATAATAATAAGGAAGAG+AGG	0.576063	4_1:-79567376	None:intergenic
AACTGCAAATGATGTGAAAT+GGG	0.489150	4_1:+79569651	Msa0575660:CDS
AACTTGAGCAAAAGGCCATG+GGG	0.673540	4_1:+79569716	Msa0575660:CDS
AACTTTGTCAAGATTGATGA+GGG	0.560325	4_1:+79570220	Msa0575660:CDS
AAGAAGACAGCAAGTGCAAG+TGG	0.479650	4_1:-79567323	None:intergenic
AAGAGAAGGCATTCTTGTCG+AGG	0.606850	4_1:-79569608	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAAGAGTGACAAAAAT+GGG	-	chr4_1:79567435-79567454	None:intergenic	30.0%
GGATCTTTAAATGGAAAGAA+GGG	-	chr4_1:79567457-79567476	None:intergenic	30.0%
TGGATCTTTAAATGGAAAGA+AGG	-	chr4_1:79567458-79567477	None:intergenic	30.0%
TGCATTCAGTTTCTTCTAAT+AGG	+	chr4_1:79567874-79567893	Msa0575660:CDS	30.0%
ATTTCAACCTTGTAAGTCAA+CGG	-	chr4_1:79568229-79568248	None:intergenic	30.0%
TTGTTATGCTTGTGATATGA+TGG	+	chr4_1:79568276-79568295	Msa0575660:intron	30.0%
GTTACAAATAGAGATGTACA+AGG	+	chr4_1:79568337-79568356	Msa0575660:intron	30.0%
CATTTGCATAATTTGAATCG+TGG	+	chr4_1:79568406-79568425	Msa0575660:intron	30.0%
GATAGACGAAGGAAAATTAT+AGG	+	chr4_1:79568788-79568807	Msa0575660:intron	30.0%
GAAGAATTTAGATTAAGTGG+TGG	+	chr4_1:79568823-79568842	Msa0575660:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	79567310	79575210	79567310	ID=Msa0575660;Name=Msa0575660
chr4_1	mRNA	79567310	79575210	79567310	ID=Msa0575660-mRNA-1;Parent=Msa0575660;Name=Msa0575660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=428\|1\|1\|1\|1\|1\|13\|673\|1025
chr4_1	exon	79567310	79568202	79567310	ID=Msa0575660-mRNA-1:exon:28365;Parent=Msa0575660-mRNA-1
chr4_1	exon	79569532	79569969	79569532	ID=Msa0575660-mRNA-1:exon:28366;Parent=Msa0575660-mRNA-1
chr4_1	exon	79570142	79570245	79570142	ID=Msa0575660-mRNA-1:exon:28367;Parent=Msa0575660-mRNA-1
chr4_1	exon	79570393	79571636	79570393	ID=Msa0575660-mRNA-1:exon:28368;Parent=Msa0575660-mRNA-1
chr4_1	exon	79571774	79571814	79571774	ID=Msa0575660-mRNA-1:exon:28369;Parent=Msa0575660-mRNA-1
chr4_1	exon	79572200	79572268	79572200	ID=Msa0575660-mRNA-1:exon:28370;Parent=Msa0575660-mRNA-1
chr4_1	exon	79572432	79572532	79572432	ID=Msa0575660-mRNA-1:exon:28371;Parent=Msa0575660-mRNA-1
chr4_1	exon	79573302	79573380	79573302	ID=Msa0575660-mRNA-1:exon:28372;Parent=Msa0575660-mRNA-1
chr4_1	exon	79573473	79573571	79573473	ID=Msa0575660-mRNA-1:exon:28373;Parent=Msa0575660-mRNA-1
chr4_1	exon	79573686	79573754	79573686	ID=Msa0575660-mRNA-1:exon:28374;Parent=Msa0575660-mRNA-1
chr4_1	exon	79573895	79573944	79573895	ID=Msa0575660-mRNA-1:exon:28375;Parent=Msa0575660-mRNA-1
chr4_1	exon	79574028	79574204	79574028	ID=Msa0575660-mRNA-1:exon:28376;Parent=Msa0575660-mRNA-1
chr4_1	exon	79574396	79575210	79574396	ID=Msa0575660-mRNA-1:exon:28377;Parent=Msa0575660-mRNA-1
chr4_1	five_prime_UTR	79567310	79567737	79567310	ID=Msa0575660-mRNA-1:five_prime_utr;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79567738	79568202	79567738	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79569532	79569969	79569532	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79570142	79570245	79570142	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79570393	79571636	79570393	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79571774	79571814	79571774	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79572200	79572268	79572200	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79572432	79572532	79572432	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79573302	79573380	79573302	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79573473	79573571	79573473	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79573686	79573754	79573686	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79573895	79573944	79573895	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79574028	79574204	79574028	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	CDS	79574396	79574537	79574396	ID=Msa0575660-mRNA-1:cds;Parent=Msa0575660-mRNA-1
chr4_1	three_prime_UTR	79574538	79575210	79574538	ID=Msa0575660-mRNA-1:three_prime_utr;Parent=Msa0575660-mRNA-1

Gene Sequence

>Msa0575660

ATGAAGAACATTCTTAAGAAGCTTCATAGAATGTCTAATAATCAATCAGAAGATGCACAAGCTGAAAGGAGTAACAACAAGTCCAATGATGGTTCATCTTCATCTCCTACTACCAGAATGAAGCTTTCAAATTGGTTGCATTCAGTTTCTTCTAATAGGCAGCAGAGTCCTGGCAGTCCTCCATCAGGAGAAAGAGTGGAGGAGCTATCTGATTCACTCACCTTTGGTGGTGGTGGTGGTGGTGGTGCTTTGGATATGGTGGTTTTTGATTCAACCAAGCGTGATTCAGGCTCCAGCAGTTCAAGGGATCCTGAAGTGGAAGAAGAATATCAGATTCAGCTTGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTACAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTCACCCTGATAATACACCAGCTGAAGTTGTCGCATACCGATACTGGAATTACAATGCTCTTGGGTATGATGACAAGATCTCAGATGGTTTCTATGATCTGTATGGTGTCCTAACTGATTCAACCTCGACAAGAATGCCTTCTCTTATAGATCTGCAAGGAACACCAACTGCAAATGATGTGAAATGGGAAGCAGTCTTGGTCAACAGAGTAGCTGATTCCAATTTGTTGAAACTTGAGCAAAAGGCCATGGGGTTTGCAGTGAAATCAAGAGAAGATTTTGAAATAGTTGTAGATAGAAATTTGGTGCACAAGCTTGCAATACTTGTGGCTGAATATATGGGTGGATCAGTTGAAGATCCTGAAAGTATGTCAAGAGCATGGAGGAGTCTTAGTTACAGTCTAAAAGCAACCCTCGGTAGCATGGTTTTGCCACTTGGGTCACTGACCATTGGATTGGCTCGGCATCGTGCATTGTTATTTAAGGTGTTAGCTGATAGTTTGGGCATCCCTTGTCAGTTGGTGAAAGGAATGCAATATACAGGTTCTGATGATGTGGCAATGAACTTTGTCAAGATTGATGAGGGAAGGGAGTACATTGTTGACCTCATGGCAGCTCCTGGAACTCTTATTCCATCTGATGCAGCTGGGTCACATATTGAGTATGATGATTCTTCTTTTGTAGCGAGTCCCTCGTCAAGAGATCTTGATTCATCTCACATTACATCGTTCAGCAGCGGGGTTGGATGTTCATCTGAAGAAACTTCAGACTTTAGGACTTTTGAAAAAGGAAACAGGTATAAACATTTTGCTGATGCAGGGAAGGAATCTGATGTAAGCAGCAGGCCCCCTACTAGCAAAGAAGAATTAAAAACATCGTTAAATGAATTCAAAAATATCCCTAACGTAGAAAAGATTAAGGCGAGGGAATCTGTTAGCAGACCTAATAATTATCCATACATGCATGGAAGATCTCCTTCTTGGACAGAAGGGATCAGTTCCCCAGAAGCCCATAGAATGAAAGTCAAAGATGTTTCCCAATATATGATTGATGTTACCAAGGAGAACCCTAAGTTGGCTCAAAAGCTTCATGATGTCCTGCTCGAAAGTGGCGTTGTTGCTCCTCCAAACTTGTTTTCTGAAATTTATCACGAGCAGTTAGGTTCTCAAAATGAGGCCAATTCTCCAACTGAAGAAGATGAATATAAACACCAAAGTGCACAGAAAGAAGCTAAGGAGGATAGTGATAATCTAGCTCCTCGATTTTTGCCTCCGTTGCCTCCCCACATAATTCATCCCAAAGCAAGTCCTAGCAATCAGCTGGAACATTCCAAGCCTGTAGAAGGTTTGGGAATTGGTCTTTCTCTTGATTCTAGGGAAGCTGCTGTACAGCACACATATTCTGACGCAGAAGCAACACAGGTAAAATATGGGAAAAATGTACCAGTTGCTGCTGCAGCAGCTGCTGCGGCTGCTGTTGTTGCATCTTCGATGGTAGTTGCTGTGGCAAAGTCAAGCACTGACTCAAGTTTTGAGATTCCTGTAGCAGCTGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAACAGTATGAGCTGGGGAATCGAAGTGATGGAGATACAGAAGGTTCTGGTAATGAACCAAAAGGCAGTGGTGATGGTGAGAATAATGCTTTAGGAGCAAACTCAGAAGGTGGGGAAAAATCTGATAGATCAGTCAGTAACGATAGTACAAAATCTGATTCGGCATTAGATGATGTTGCTGAGTATGACATTCCGTGGGAAGAAATCACGATGGGCGAGCGAATCGGACTCGGATCATATGGAGAAGTGTATCGTGGTGAATGGCATGGAACTGAAGTTGCTGTAAAGAGGTTTCTACTTCAAGATATCTCTGGTGAATCACTTGAAGAATTCAAAAGTGAGGTCCAAATAATGAGAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCTATAACTAGACCTCCAAATCTTTCAATCGTTACTGAATTTCTTCCTAGAGGGAGTTTATATAGATTAATTCACCGACCTAACAATCAATTAGACGAACGAAGGCGGTTGAGGATGGCCCTGGATGCTGCTCGAGGAATGAATTATTTGCATAACAGCACTCCAGTGATAGTGCATCGTGATTTAAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGCGATTTTGGCTTATCTCGAATGAAGTACAGTACGTTCCTTTCTTCTAGATCAACTGCAGGAACAGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAACGAACTTTCAGATGAAAAGTGTGATGTTTTTAGCTATGGGGTCATATTATGGGAGCTCTTTACTATGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCTGTTGGTTTCCAGCATCGCCGTCTGGACATTCCAGATGATGTGGACACTGCCATTGCAAATATTATTAGACAGTGTTGGCAGACCGATCCAAAGTCGAGACCTACTTTTGCTGAAATAATGGCGTTATTGAAGCCATTGCAGAAGCCAATTACTGGTTCTCAAGTGCATAGAGCAAGTGCTCATGCTCACTCATCACGATCTGCTGAAGATCCTGCTGCAGCGTAG

Protein sequence

>Msa0575660

MKNILKKLHRMSNNQSEDAQAERSNNKSNDGSSSSPTTRMKLSNWLHSVSSNRQQSPGSPPSGERVEELSDSLTFGGGGGGGALDMVVFDSTKRDSGSSSSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCHPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGVLTDSTSTRMPSLIDLQGTPTANDVKWEAVLVNRVADSNLLKLEQKAMGFAVKSREDFEIVVDRNLVHKLAILVAEYMGGSVEDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCQLVKGMQYTGSDDVAMNFVKIDEGREYIVDLMAAPGTLIPSDAAGSHIEYDDSSFVASPSSRDLDSSHITSFSSGVGCSSEETSDFRTFEKGNRYKHFADAGKESDVSSRPPTSKEELKTSLNEFKNIPNVEKIKARESVSRPNNYPYMHGRSPSWTEGISSPEAHRMKVKDVSQYMIDVTKENPKLAQKLHDVLLESGVVAPPNLFSEIYHEQLGSQNEANSPTEEDEYKHQSAQKEAKEDSDNLAPRFLPPLPPHIIHPKASPSNQLEHSKPVEGLGIGLSLDSREAAVQHTYSDAEATQVKYGKNVPVAAAAAAAAAVVASSMVVAVAKSSTDSSFEIPVAAAATATAAAVVATTAAVSKQYELGNRSDGDTEGSGNEPKGSGDGENNALGANSEGGEKSDRSVSNDSTKSDSALDDVAEYDIPWEEITMGERIGLGSYGEVYRGEWHGTEVAVKRFLLQDISGESLEEFKSEVQIMRRLRHPNVVLFMGAITRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKYSTFLSSRSTAGTAEWMAPEVLRNELSDEKCDVFSYGVILWELFTMQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDTAIANIIRQCWQTDPKSRPTFAEIMALLKPLQKPITGSQVHRASAHAHSSRSAEDPAAA*