AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748730 MtrunA17_Chr4g0065291 97.118 798 23 0 1 798 47 844 0.0 1568
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748730 AT3G09850.1 43.905 804 378 19 14 798 32 781 2.66e-159 483

Find 200 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGCTCCATTCACGATTAT+TGG 0.140175 5_2:+1990032 Msa0748730:five_prime_UTR
AATGGATTTGCAAAATCTTT+AGG 0.181125 5_2:+1990497 Msa0748730:CDS
ATGGATTTGCAAAATCTTTA+GGG 0.233644 5_2:+1990498 Msa0748730:CDS
AAAGGAACGTGCTTCTTTAC+AGG 0.253397 5_2:-1991883 None:intergenic
TCCTCTTCCAATCGCAATTC+AGG 0.259203 5_2:+1990210 Msa0748730:CDS
GTGTCTTCTAGTAGAAATTC+AGG 0.268370 5_2:+1991466 Msa0748730:CDS
AGTCGTACCATGAATTCTTT+TGG 0.270768 5_2:-1992019 None:intergenic
TTTCTCGGTTTCCTCATTCT+TGG 0.273772 5_2:+1991968 Msa0748730:CDS
ACCAACTCTTGAAGAACTTT+TGG 0.277807 5_2:-1996246 None:intergenic
TTTCTAGCAGAAATGGTTCT+TGG 0.283239 5_2:-1991937 None:intergenic
TTTGTTGAAGGTTCAGGATT+AGG 0.287935 5_2:+1996452 Msa0748730:CDS
GAAATTGGAAAAGATTGTTT+TGG 0.294257 5_2:+1993659 Msa0748730:intron
AGACAGCAAGAACTTCAATT+TGG 0.300216 5_2:+1995801 Msa0748730:CDS
ATGGGATTTGTTGAAGGTTC+AGG 0.301295 5_2:+1996446 Msa0748730:CDS
GGTGGTTCAAATAACAAATC+TGG 0.308507 5_2:+1990440 Msa0748730:CDS
ATCAGGTCATCCAGAGTAAA+AGG 0.316507 5_2:-1991901 None:intergenic
CGGAGTAGCAGCCAAAGTTC+TGG 0.319995 5_2:+1994763 Msa0748730:CDS
AGAACCAACATCCTTCTTAA+AGG 0.321074 5_2:-1991395 None:intergenic
AACCAAGTGATTTCGGCCTT+TGG 0.328127 5_2:-1996154 None:intergenic
AAGGACGATGAATCTAAAAC+TGG 0.336724 5_2:-1991376 None:intergenic
TTTCGTGAACTTCAGTTGTT+AGG 0.336856 5_2:+1995669 Msa0748730:intron
GGATCTTCAACTTCAGGTAT+TGG 0.337942 5_2:+1996329 Msa0748730:CDS
GGATCTTCAACTTCAGGTAT+TGG 0.337942 5_2:+1996374 Msa0748730:CDS
GAAAAGCATACAAAGGGGTT+TGG 0.343492 5_2:+1996404 Msa0748730:CDS
GAGGTACACACTACTGGTTT+TGG 0.344696 5_2:+1996044 Msa0748730:CDS
ACACCCAAACCAAGTGATTT+CGG 0.348497 5_2:-1996161 None:intergenic
CAAGACGCCTCCAGGGAATA+TGG 0.351405 5_2:+1991829 Msa0748730:CDS
AAGGCCGAAATCACTTGGTT+TGG 0.353723 5_2:+1996157 Msa0748730:CDS
CTGCTCCATTGGGCGCTGTT+CGG 0.353983 5_2:+1996495 Msa0748730:CDS
CAGGTCTTTGCCTCCATGGT+TGG 0.354838 5_2:-1991864 None:intergenic
AGTTCTTTGGTGTCTTGCTC+TGG 0.357335 5_2:-1995824 None:intergenic
ATGCTTCTTTCTAGCAGAAA+TGG 0.362301 5_2:-1991944 None:intergenic
ATCACTGTTAAAAGTTATCT+AGG 0.363064 5_2:+1996660 Msa0748730:three_prime_UTR
CTACTAGAAGACACCTTTGA+TGG 0.365401 5_2:-1991457 None:intergenic
AGGTGGATTCTTATCCGATT+GGG 0.368932 5_2:+1990182 Msa0748730:CDS
CGTAAAGTGAAGGACAATAG+AGG 0.374143 5_2:+1995864 Msa0748730:CDS
AGGTCTTTGCCTCCATGGTT+GGG 0.375090 5_2:-1991863 None:intergenic
GAAGTCTCGCGTGGTGGGAT+TGG 0.375705 5_2:+1991103 Msa0748730:CDS
ACAACATCATCGATGCAAAA+TGG 0.376876 5_2:+1991713 Msa0748730:CDS
TCCACACTGTTCTGCTTTGA+AGG 0.386666 5_2:-1991226 None:intergenic
TGAGGTTGCAGAAGATTATC+TGG 0.387013 5_2:+1991672 Msa0748730:CDS
ACAAAAGGATCTTCAACTTC+AGG 0.387800 5_2:+1996323 Msa0748730:CDS
CTAGAAAGAAGCATGTTTCT+CGG 0.388329 5_2:+1991953 Msa0748730:CDS
TCTCTGCTGACTGAGTTCTT+TGG 0.389286 5_2:-1995837 None:intergenic
GTTACCAAAGTCACGAGGAT+TGG 0.390377 5_2:+1996517 Msa0748730:CDS
GAGCAATTATTTGATTCTGC+TGG 0.392126 5_2:-1991186 None:intergenic
ATTACATCTAAATTAACCTT+TGG 0.393075 5_2:-1996543 None:intergenic
TCATCTGACTCGTCCACAAC+AGG 0.393180 5_2:-1991745 None:intergenic
AAGTCTCGCGTGGTGGGATT+GGG 0.395645 5_2:+1991104 Msa0748730:CDS
CTCACCGACTTCTTGTTCAT+AGG 0.395763 5_2:-1995729 None:intergenic
TGATCTTGAGAAAATTAATT+CGG 0.397477 5_2:+1992692 Msa0748730:CDS
AGGCCGAAATCACTTGGTTT+GGG 0.399080 5_2:+1996158 Msa0748730:CDS
CGGCCTTTGGATAACCTCAA+TGG 0.399137 5_2:-1996141 None:intergenic
AAAGCCTCCAAAAGAATTCA+TGG 0.406585 5_2:+1992012 Msa0748730:CDS
TTTACAGGTCTTTGCCTCCA+TGG 0.407110 5_2:-1991868 None:intergenic
AGTAGAAGAGGAAGAGGTAG+AGG 0.409250 5_2:+1990075 Msa0748730:CDS
TCAGGGTTTCTTTCCATTGG+TGG 0.412402 5_2:+1991484 Msa0748730:CDS
ACCAATACTTGAAGAGCCTT+TGG 0.416078 5_2:-1996285 None:intergenic
GGTGAGGCTTTGGAGAAGTT+GGG 0.423356 5_2:+1991793 Msa0748730:CDS
ATTTGGGTTGCAGGTAGAAA+TGG 0.424728 5_2:+1990419 Msa0748730:intron
TTGCTTCCAATAATCGTGAA+TGG 0.425976 5_2:-1990038 None:intergenic
GGCCTTTGGATAACCTCAAT+GGG 0.431755 5_2:-1996140 None:intergenic
GGTGGAAGTAGAAGAGGAAG+AGG 0.434037 5_2:+1990069 Msa0748730:CDS
ATCAAAGATGATGGCAAAGA+TGG 0.434528 5_2:+1996427 Msa0748730:CDS
TTATTCTTCACCTGATGTAC+AGG 0.436427 5_2:+1990538 Msa0748730:CDS
TATCCCTTCAAGACGCCTCC+AGG 0.442079 5_2:+1991821 Msa0748730:CDS
GACTGATAGTGCAGATAAGA+AGG 0.443037 5_2:+1995989 Msa0748730:CDS
ACAAGGTATTACTGCTCCAT+TGG 0.445783 5_2:+1996484 Msa0748730:CDS
CGGTAGCTATGGTGAGGCTT+TGG 0.449089 5_2:+1991783 Msa0748730:CDS
ACCAAAGGCTCTTCAAGTAT+TGG 0.451271 5_2:+1996284 Msa0748730:CDS
TGGTGAGGCTTTGGAGAAGT+TGG 0.451946 5_2:+1991792 Msa0748730:CDS
TGCAAGTGGTAGACAGCGCC+TGG 0.452863 5_2:+1994925 Msa0748730:CDS
TTACCAAAGTCACGAGGATT+GGG 0.453100 5_2:+1996518 Msa0748730:CDS
AACACCAGCGGAAGCGGTAG+TGG 0.455366 5_2:+1990105 Msa0748730:CDS
TCTTCTGAGCAAGAAGTACT+TGG 0.456310 5_2:+1991592 Msa0748730:CDS
TGCAAACAAACCTGTACATC+AGG 0.459981 5_2:-1990548 None:intergenic
ATTCCCTGGAGGCGTCTTGA+AGG 0.463302 5_2:-1991825 None:intergenic
AATTCAGGGTTTCTTTCCAT+TGG 0.463398 5_2:+1991481 Msa0748730:CDS
AGATTCATCGTCCTTTAAGA+AGG 0.472400 5_2:+1991384 Msa0748730:CDS
GCAAAGATGGGATTTGTTGA+AGG 0.473979 5_2:+1996440 Msa0748730:CDS
TGGTAGACAGCGCCTGGAAA+AGG 0.475024 5_2:+1994931 Msa0748730:CDS
AGCAATTATTTGATTCTGCT+GGG 0.475436 5_2:-1991185 None:intergenic
ACCAAAAGTTCTTCAAGAGT+TGG 0.477228 5_2:+1996245 Msa0748730:CDS
ACTACCGCTTCCGCTGGTGT+TGG 0.478712 5_2:-1990103 None:intergenic
ATGGGAGGTGGAAGTAGAAG+AGG 0.479292 5_2:+1990063 Msa0748730:CDS
ATCCAAAGGCCGAAATCACT+TGG 0.483163 5_2:+1996152 Msa0748730:CDS
ACAAAAGGATCTTCAACTTC+AGG 0.485803 5_2:+1996368 Msa0748730:CDS
AAGGTGGATTCTTATCCGAT+TGG 0.487065 5_2:+1990181 Msa0748730:CDS
ACCTGAATTGCGATTGGAAG+AGG 0.489536 5_2:-1990211 None:intergenic
GATTATCTGGAAGGAGTTGG+TGG 0.493687 5_2:+1991685 Msa0748730:CDS
GGAGTAGCAGCCAAAGTTCT+GGG 0.494621 5_2:+1994764 Msa0748730:CDS
GATAGTTCTCATAGAGGACT+AGG 0.495640 5_2:+1991283 Msa0748730:CDS
GGATGACCTGATGCTCGAAA+AGG 0.498489 5_2:+1991912 Msa0748730:CDS
ATGGTCAGATTCAATGTAGC+AGG 0.505417 5_2:-1996772 None:intergenic
CAAGGTATTACTGCTCCATT+GGG 0.508666 5_2:+1996485 Msa0748730:CDS
TGGCAGGAGTTTATCAGTTG+CGG 0.511083 5_2:+1994743 Msa0748730:CDS
GAAATCACTTGGTTTGGGTG+TGG 0.511866 5_2:+1996163 Msa0748730:CDS
GTGGAATATACATACAGTTA+TGG 0.514442 5_2:+1991244 Msa0748730:CDS
AGAACCAACATTAGCAGAGC+TGG 0.514799 5_2:-1996018 None:intergenic
GCCAAAGTTCTGGGAAAAGA+AGG 0.519178 5_2:+1994773 Msa0748730:CDS
TTTCATCATGCCATATTCCC+TGG 0.521306 5_2:-1991839 None:intergenic
GTTTCCACTACCGCTTCCGC+TGG 0.522358 5_2:-1990109 None:intergenic
AGATCCAACACCAGCGGAAG+CGG 0.523098 5_2:+1990099 Msa0748730:CDS
TGTCTTCTAGTAGAAATTCA+GGG 0.524061 5_2:+1991467 Msa0748730:CDS
GCCACCAGCTCTGCTAATGT+TGG 0.526599 5_2:+1996014 Msa0748730:CDS
GTGGTTCAAATAACAAATCT+GGG 0.527403 5_2:+1990441 Msa0748730:CDS
ATATAGGTACAGCGGTTGGC+AGG 0.527805 5_2:+1994727 Msa0748730:intron
ATGATGTGATAGTGCCACTT+GGG 0.528105 5_2:-1991330 None:intergenic
TTGTTAAAACGGGCGTCCAT+TGG 0.529238 5_2:-1996843 None:intergenic
AGTTCTTCCAGCGGTAGCTA+TGG 0.533008 5_2:+1991772 Msa0748730:CDS
GGAAGAGGAAGGACCCCAAT+CGG 0.535272 5_2:-1990196 None:intergenic
AGCCTCACCATAGCTACCGC+TGG 0.539111 5_2:-1991779 None:intergenic
GAGAGAACCTGAATTGCGAT+TGG 0.541049 5_2:-1990217 None:intergenic
AACCCGAAAACCCGTAAAAG+AGG 0.541769 5_2:+1990129 Msa0748730:CDS
TGGGATTCCACCATAACAAA+AGG 0.542965 5_2:-1991166 None:intergenic
ACCCGTAAAAGAGGTTCAGT+TGG 0.543592 5_2:+1990138 Msa0748730:CDS
GGATAGAAACTGTGATCAGA+TGG 0.543707 5_2:+1991423 Msa0748730:CDS
TTGCTCTTCTGAGTATGTGA+AGG 0.547065 5_2:-1991991 None:intergenic
CGCTGTCTACCACTTGCAGA+TGG 0.551619 5_2:-1994920 None:intergenic
GTTGTTAGGAGTTGATGAAG+AGG 0.552040 5_2:+1995683 Msa0748730:intron
TTGGGAGATAGTTCTCATAG+AGG 0.553009 5_2:+1991277 Msa0748730:CDS
ACCAGGAAGTCTCGCGTGGT+GGG 0.556174 5_2:+1991098 Msa0748730:intron
TTCCCTGGAGGCGTCTTGAA+GGG 0.557047 5_2:-1991824 None:intergenic
TCAAAGATGATGGCAAAGAT+GGG 0.557589 5_2:+1996428 Msa0748730:CDS
TCACGAGGATTGGGCGCCAA+AGG 0.557803 5_2:+1996527 Msa0748730:CDS
GCTACATTGAATCTGACCAT+TGG 0.558739 5_2:+1996775 Msa0748730:three_prime_UTR
TCGTCCTTTAAGAAGGATGT+TGG 0.562484 5_2:+1991391 Msa0748730:CDS
GAAGATTATCTGGAAGGAGT+TGG 0.566201 5_2:+1991682 Msa0748730:CDS
GGGTTTCGTCATGTTCAGCA+TGG 0.567965 5_2:-1991309 None:intergenic
GGGGTTTGGATCAAAGATGA+TGG 0.569434 5_2:+1996418 Msa0748730:CDS
ACACTGTTCTGCTTTGAAGG+AGG 0.570191 5_2:-1991223 None:intergenic
TACATGTCTTCCATAAAAGT+AGG 0.570422 5_2:-1996733 None:intergenic
GATGATGTGATAGTGCCACT+TGG 0.570624 5_2:-1991331 None:intergenic
CTACGTAGAGGAGAAGCATC+CGG 0.570924 5_2:+1990467 Msa0748730:CDS
GAGGCTTTGGAGAAGTTGGG+TGG 0.575721 5_2:+1991796 Msa0748730:CDS
TGGGTTGCAGGTAGAAATGG+TGG 0.583116 5_2:+1990422 Msa0748730:intron
GAAGGATGTTGGTTCTGATG+AGG 0.583286 5_2:+1991402 Msa0748730:CDS
GGAAGAAGACTTGCCATCAA+AGG 0.583887 5_2:+1991444 Msa0748730:CDS
ATGGGATACACTGAAGGAGG+GGG 0.584549 5_2:+1996086 Msa0748730:CDS
GTATAACTTAAGACCACCAA+TGG 0.584629 5_2:-1991497 None:intergenic
CCAGTGTCATTTGTATCAAG+CGG 0.586966 5_2:+1995918 Msa0748730:CDS
AAAATGGGATACACTGAAGG+AGG 0.587249 5_2:+1996083 Msa0748730:CDS
TTCCAGCGGTAGCTATGGTG+AGG 0.589555 5_2:+1991777 Msa0748730:CDS
ACAATAATACACAATCAGAA+AGG 0.589988 5_2:-1996577 None:intergenic
CTGACCATTGGATGAACTCG+TGG 0.592087 5_2:+1996787 Msa0748730:three_prime_UTR
GGTGGATTCTTATCCGATTG+GGG 0.594381 5_2:+1990183 Msa0748730:CDS
GGTGGGATTGGGAACAACAA+TGG 0.595350 5_2:+1991115 Msa0748730:CDS
AGGACGATGAATCTAAAACT+GGG 0.596269 5_2:-1991375 None:intergenic
AATGGGATACACTGAAGGAG+GGG 0.599358 5_2:+1996085 Msa0748730:CDS
GTATGTGAAGGCCAAGAATG+AGG 0.601158 5_2:-1991979 None:intergenic
ATTGGGAACAACAATGGAGA+TGG 0.602466 5_2:+1991121 Msa0748730:CDS
ATCCCTTCAAGACGCCTCCA+GGG 0.603215 5_2:+1991822 Msa0748730:CDS
TCTTCTGAAAAGCGTACCAA+AGG 0.603247 5_2:+1996269 Msa0748730:CDS
TTAAGTGTTGTGATCTTACG+TGG 0.605767 5_2:+1996603 Msa0748730:three_prime_UTR
ATTCCACCATAACAAAAGGT+TGG 0.605848 5_2:-1991162 None:intergenic
GCATTCTCGAGATTGCTCAC+AGG 0.613292 5_2:+1993713 Msa0748730:CDS
GCTAAAATGGGATACACTGA+AGG 0.615184 5_2:+1996080 Msa0748730:CDS
GTAAAGTGAAGGACAATAGA+GGG 0.616316 5_2:+1995865 Msa0748730:CDS
GAGCAATCTCGAGAATGCAT+AGG 0.616893 5_2:-1993708 None:intergenic
TCAGATTTGTGACAGTGATG+CGG 0.618979 5_2:+1994879 Msa0748730:intron
ATGAATATAGGTACAGCGGT+TGG 0.619713 5_2:+1994723 Msa0748730:intron
GCATGATGAAAGCCCAACCA+TGG 0.621804 5_2:+1991851 Msa0748730:CDS
GATCCAGCAAGGGACAGTAT+CGG 0.623134 5_2:+1996206 Msa0748730:CDS
GTTGCAGAAGATTATCTGGA+AGG 0.624706 5_2:+1991676 Msa0748730:CDS
ACATCGATGCCATCTGCAAG+TGG 0.624959 5_2:+1994911 Msa0748730:CDS
AGGTATGGCTCAGCCCATTG+AGG 0.628083 5_2:+1996127 Msa0748730:CDS
GAAAAGACATCTGATGAGGA+CGG 0.634225 5_2:+1991562 Msa0748730:CDS
AAATGGGATACACTGAAGGA+GGG 0.635043 5_2:+1996084 Msa0748730:CDS
GGAAACAAAATAAGAAAACT+CGG 0.636334 5_2:+1996709 Msa0748730:three_prime_UTR
ACTGATAGTGCAGATAAGAA+GGG 0.636835 5_2:+1995990 Msa0748730:CDS
TAACTTGTACAGTTTCTGAG+TGG 0.637836 5_2:-1995947 None:intergenic
TGATTCAGACATTGATGATG+AGG 0.638404 5_2:+1991654 Msa0748730:CDS
CATCTGACTCGTCCACAACA+GGG 0.642232 5_2:-1991744 None:intergenic
GGACGATGAATCTAAAACTG+GGG 0.648232 5_2:-1991374 None:intergenic
CAGAGACAGACGTAAAGTGA+AGG 0.648868 5_2:+1995854 Msa0748730:CDS
CAATGTTGATGATCCAGCAA+GGG 0.649862 5_2:+1996196 Msa0748730:CDS
TGATGTGATAGTGCCACTTG+GGG 0.655301 5_2:-1991329 None:intergenic
GCAATGTTGATGATCCAGCA+AGG 0.655723 5_2:+1996195 Msa0748730:CDS
CTCCATGAATATAGGTACAG+CGG 0.656226 5_2:+1994719 Msa0748730:intron
TGATACTGAAGCTGTACCAA+TGG 0.656890 5_2:+1996827 Msa0748730:three_prime_UTR
AACTCCACGAGTTCATCCAA+TGG 0.657396 5_2:-1996791 None:intergenic
CCGCTTGATACAAATGACAC+TGG 0.657929 5_2:-1995918 None:intergenic
ACCAACATTAGCAGAGCTGG+TGG 0.659686 5_2:-1996015 None:intergenic
GGATCCTATGAACAAGAAGT+CGG 0.662351 5_2:+1995725 Msa0748730:CDS
AGCCCATTGAGGTTATCCAA+AGG 0.665722 5_2:+1996138 Msa0748730:CDS
CATTGAAAAGACATCTGATG+AGG 0.669248 5_2:+1991558 Msa0748730:CDS
AGAGGAAGATCCAACACCAG+CGG 0.671243 5_2:+1990093 Msa0748730:CDS
GAATTGCGATTGGAAGAGGA+AGG 0.674217 5_2:-1990207 None:intergenic
CATCATGCCATATTCCCTGG+AGG 0.682222 5_2:-1991836 None:intergenic
GATGATGATAGTTCTTCCAG+CGG 0.696571 5_2:+1991763 Msa0748730:CDS
TCCTTCAAAGCAGAACAGTG+TGG 0.701697 5_2:+1991225 Msa0748730:CDS
GAACATGACGAAACCCCAAG+TGG 0.708926 5_2:+1991316 Msa0748730:CDS
ATATACCAGGAAGTCTCGCG+TGG 0.708931 5_2:+1991094 Msa0748730:intron
TGATGAAAGCCCAACCATGG+AGG 0.712996 5_2:+1991854 Msa0748730:CDS
ATGGTTGCTAGACCCTGTTG+TGG 0.719295 5_2:+1991732 Msa0748730:CDS
AAATCTGGGAGTCTACGTAG+AGG 0.732384 5_2:+1990455 Msa0748730:CDS
GTTCGGTTACCAAAGTCACG+AGG 0.738978 5_2:+1996512 Msa0748730:CDS
GGATTAGGTAGAGAATCACA+AGG 0.757337 5_2:+1996467 Msa0748730:CDS
TGGTCTTAAGTTATACACAG+AGG 0.760535 5_2:+1991504 Msa0748730:CDS
AGAGAGAGAATGCAACACCG+AGG 0.788547 5_2:+1992666 Msa0748730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr5_2:1994504-1994523 None:intergenic 0.0%
!!! AAAAATTGATAATTTATATC+TGG + chr5_2:1990319-1990338 Msa0748730:intron 10.0%
!!! AAAATTGATAATTTATATCT+GGG + chr5_2:1990320-1990339 Msa0748730:intron 10.0%
!!! TTTGAGTATTTATTTTATTT+GGG + chr5_2:1990403-1990422 Msa0748730:intron 10.0%
!!! AATTAAAAGCATATAATTAA+GGG - chr5_2:1992082-1992101 None:intergenic 10.0%
!!! AAATTAAAAGCATATAATTA+AGG - chr5_2:1992083-1992102 None:intergenic 10.0%
!! TAAAATACAAATAAATCAAT+GGG - chr5_2:1993075-1993094 None:intergenic 10.0%
!! ATAAAATACAAATAAATCAA+TGG - chr5_2:1993076-1993095 None:intergenic 10.0%
!! TTCAAAAAAATAATATATTG+TGG + chr5_2:1994103-1994122 Msa0748730:intron 10.0%
!! ATTAAATTTAGATTTCTAAT+TGG + chr5_2:1994308-1994327 Msa0748730:intron 10.0%
!!! AAAATAATTTTCAGTTTATT+TGG - chr5_2:1995512-1995531 None:intergenic 10.0%
!!! GTTTGAGTATTTATTTTATT+TGG + chr5_2:1990402-1990421 Msa0748730:intron 15.0%
!!! TATAACTTTAAGCATTTTTA+AGG + chr5_2:1990592-1990611 Msa0748730:intron 15.0%
!! TAATTAATGATATTAATGCA+AGG - chr5_2:1992201-1992220 None:intergenic 15.0%
!! AATCCAAAAAAATAAAGTTA+GGG - chr5_2:1993636-1993655 None:intergenic 15.0%
!!! ATATATCATTTTGTAATCAA+CGG - chr5_2:1993929-1993948 None:intergenic 15.0%
!!! TTGAAAATCAATTTTTGAAT+TGG - chr5_2:1994374-1994393 None:intergenic 15.0%
!! TTAAATAGATGAATATCATA+AGG - chr5_2:1994639-1994658 None:intergenic 15.0%
!!! TGATTGTAGTTTTTTAATTA+TGG + chr5_2:1996688-1996707 Msa0748730:three_prime_UTR 15.0%
!! TATAATTAAGGGAATAACAT+TGG - chr5_2:1992071-1992090 None:intergenic 20.0%
!!! TTTTAAATCCCTTGATTATT+TGG + chr5_2:1992230-1992249 Msa0748730:intron 20.0%
!!! CATGAAATATTAACTTGAAA+TGG + chr5_2:1992491-1992510 Msa0748730:intron 20.0%
!!! AGTGAATGAATTTTAGATAT+TGG + chr5_2:1992524-1992543 Msa0748730:intron 20.0%
!! TGATCTTGAGAAAATTAATT+CGG + chr5_2:1992692-1992711 Msa0748730:CDS 20.0%
!! AACACAGAAATAACTATATT+TGG - chr5_2:1992732-1992751 None:intergenic 20.0%
!! GGATTAAAAAGGAAATATAT+AGG - chr5_2:1992975-1992994 None:intergenic 20.0%
!! GAATCCAAAAAAATAAAGTT+AGG - chr5_2:1993637-1993656 None:intergenic 20.0%
!!! TTTTTTTGGATTCTAGAAAT+TGG + chr5_2:1993644-1993663 Msa0748730:intron 20.0%
!!! TTTGAAATAGCAATACTTTT+TGG - chr5_2:1993769-1993788 None:intergenic 20.0%
!! GATTACAAAATGATATATTG+CGG + chr5_2:1993931-1993950 Msa0748730:intron 20.0%
!!! TGAGTTTTACAAATAGAAAA+AGG - chr5_2:1994132-1994151 None:intergenic 20.0%
!! ACAATCAATTCTTTGAATAA+GGG - chr5_2:1994813-1994832 None:intergenic 20.0%
!! AACAATCAATTCTTTGAATA+AGG - chr5_2:1994814-1994833 None:intergenic 20.0%
!!! ATAAATGTTTTGAAGTTTCA+AGG - chr5_2:1995108-1995127 None:intergenic 20.0%
!!! TTTAGAGATTATTTCTTTAG+AGG - chr5_2:1995594-1995613 None:intergenic 20.0%
!! ATTACATCTAAATTAACCTT+TGG - chr5_2:1996546-1996565 None:intergenic 20.0%
!!! TTGTTTTTGTCTTTCAACAA+TGG - chr5_2:1990010-1990029 None:intergenic 25.0%
!! ATTTGTGTTTTTCTATGCTT+TGG + chr5_2:1990380-1990399 Msa0748730:intron 25.0%
!!! ATTTATTTTATTTGGGTTGC+AGG + chr5_2:1990410-1990429 Msa0748730:intron 25.0%
!! AATGGATTTGCAAAATCTTT+AGG + chr5_2:1990497-1990516 Msa0748730:CDS 25.0%
! ATGGATTTGCAAAATCTTTA+GGG + chr5_2:1990498-1990517 Msa0748730:CDS 25.0%
!!! TTAAGCATTTTTAAGGTTGT+AGG + chr5_2:1990599-1990618 Msa0748730:intron 25.0%
! TTTGCATCAACAAATTTAGA+TGG - chr5_2:1990639-1990658 None:intergenic 25.0%
! GTAACATTATATATGATCTG+TGG - chr5_2:1990681-1990700 None:intergenic 25.0%
!!! ATCCATCAACATAGTTTTAT+AGG + chr5_2:1990977-1990996 Msa0748730:intron 25.0%
! ATCCTATAAAACTATGTTGA+TGG - chr5_2:1990982-1991001 None:intergenic 25.0%
!!! AGTTATGGTGATTTTGTTTT+GGG + chr5_2:1991259-1991278 Msa0748730:CDS 25.0%
!!! TGCTTTAGAAGTTTAAAATG+TGG - chr5_2:1992139-1992158 None:intergenic 25.0%
!!! GCATTGATTTTTTCAGTTAA+AGG + chr5_2:1992156-1992175 Msa0748730:intron 25.0%
!! TTTTCAGTTAAAGGATGATA+TGG + chr5_2:1992165-1992184 Msa0748730:intron 25.0%
!! ATCAAGGGATTTAAAACTTT+GGG - chr5_2:1992226-1992245 None:intergenic 25.0%
!! AATCAAGGGATTTAAAACTT+TGG - chr5_2:1992227-1992246 None:intergenic 25.0%
!!! TATACATAGATTCAAGTTGA+TGG + chr5_2:1992432-1992451 Msa0748730:intron 25.0%
! TTGAGAAAATTAATTCGGTA+AGG + chr5_2:1992697-1992716 Msa0748730:intron 25.0%
!!! ATATAGTTATTTCTGTGTTC+TGG + chr5_2:1992733-1992752 Msa0748730:intron 25.0%
! GAAAGATAAATAGAGAGAAA+GGG - chr5_2:1992793-1992812 None:intergenic 25.0%
! TGAAAGATAAATAGAGAGAA+AGG - chr5_2:1992794-1992813 None:intergenic 25.0%
! TAACTTCTTGTATCAAAATG+TGG + chr5_2:1992862-1992881 Msa0748730:intron 25.0%
! CACACATAAATCAGAAAAAA+AGG - chr5_2:1992890-1992909 None:intergenic 25.0%
! AATATATAGGTAACAGGATT+AGG - chr5_2:1992962-1992981 None:intergenic 25.0%
! AAAGGAAATATATAGGTAAC+AGG - chr5_2:1992968-1992987 None:intergenic 25.0%
! GAACTTATATGGGATTAAAA+AGG - chr5_2:1992986-1993005 None:intergenic 25.0%
! TAACAAAATTCAGATTGATG+AGG - chr5_2:1993524-1993543 None:intergenic 25.0%
! GAAATACGTGATTCAATATA+AGG - chr5_2:1993554-1993573 None:intergenic 25.0%
! TATTGAATCACGTATTTCTT+TGG + chr5_2:1993556-1993575 Msa0748730:intron 25.0%
! CAAAAAAATAAAGTTAGGGT+GGG - chr5_2:1993632-1993651 None:intergenic 25.0%
!! GAAATTGGAAAAGATTGTTT+TGG + chr5_2:1993659-1993678 Msa0748730:intron 25.0%
! AACAATCAAATGCTAACATT+TGG - chr5_2:1994432-1994451 None:intergenic 25.0%
! TTAGCATTTGATTGTTATGT+TGG + chr5_2:1994436-1994455 Msa0748730:intron 25.0%
! ATTTAACTCCTTTAAACTCT+TGG + chr5_2:1994533-1994552 Msa0748730:intron 25.0%
! TTTAACTCCTTTAAACTCTT+GGG + chr5_2:1994534-1994553 Msa0748730:intron 25.0%
! TGCAAATTTAATATCTAGTC+TGG + chr5_2:1994846-1994865 Msa0748730:intron 25.0%
! TGATTGTTCAATTTAACCAT+TGG + chr5_2:1995138-1995157 Msa0748730:intron 25.0%
! GATTGTTCAATTTAACCATT+GGG + chr5_2:1995139-1995158 Msa0748730:intron 25.0%
!!! AGTTTTGAATAAATACCCAA+TGG - chr5_2:1995157-1995176 None:intergenic 25.0%
! TGATTGAAAATTTGTAAACC+CGG - chr5_2:1995209-1995228 None:intergenic 25.0%
! TTAAAAAGAATCACTTCATG+TGG + chr5_2:1995480-1995499 Msa0748730:intron 25.0%
! TGAGAAAGAAAAATGCTAAA+AGG + chr5_2:1995769-1995788 Msa0748730:CDS 25.0%
! TTCAAAAATGATGGCTAAAA+TGG + chr5_2:1996067-1996086 Msa0748730:CDS 25.0%
! TCAAAAATGATGGCTAAAAT+GGG + chr5_2:1996068-1996087 Msa0748730:CDS 25.0%
!!! TCTTTTGAAAAGCATACAAA+AGG + chr5_2:1996308-1996327 Msa0748730:CDS 25.0%
!!! TTCTTTTGAAAAGCATACAA+AGG + chr5_2:1996307-1996326 Msa0748730:CDS 25.0%
!!! TCTTTTGAAAAGCATACAAA+GGG + chr5_2:1996308-1996327 Msa0748730:CDS 25.0%
! ACAATAATACACAATCAGAA+AGG - chr5_2:1996580-1996599 None:intergenic 25.0%
!!! ATTTTTAGACAGTCTTTCTA+CGG - chr5_2:1996642-1996661 None:intergenic 25.0%
! ATCACTGTTAAAAGTTATCT+AGG + chr5_2:1996660-1996679 Msa0748730:three_prime_UTR 25.0%
! GGAAACAAAATAAGAAAACT+CGG + chr5_2:1996709-1996728 Msa0748730:three_prime_UTR 25.0%
! TTTTTGTCTTTCAACAATGG+CGG - chr5_2:1990007-1990026 None:intergenic 30.0%
ACGATTATTGGAAGCAAAAA+TGG + chr5_2:1990044-1990063 Msa0748730:exon 30.0%
CGATTATTGGAAGCAAAAAT+GGG + chr5_2:1990045-1990064 Msa0748730:exon 30.0%
GTGGTTCAAATAACAAATCT+GGG + chr5_2:1990441-1990460 Msa0748730:CDS 30.0%
!!! TGCAAATCCATTTTTAGAAC+CGG - chr5_2:1990489-1990508 None:intergenic 30.0%
! TTTAAGGTTGTAGGTGAAAA+TGG + chr5_2:1990608-1990627 Msa0748730:intron 30.0%
TAAAAGACGACACAAACTAT+CGG + chr5_2:1990729-1990748 Msa0748730:intron 30.0%
TCTGCTAAATATCTTCCTTT+AGG - chr5_2:1990925-1990944 None:intergenic 30.0%
! TCAGAGTAACTTGCATTTAT+CGG + chr5_2:1991070-1991089 Msa0748730:intron 30.0%
AGCAATTATTTGATTCTGCT+GGG - chr5_2:1991188-1991207 None:intergenic 30.0%
GTGGAATATACATACAGTTA+TGG + chr5_2:1991244-1991263 Msa0748730:CDS 30.0%
!! CAGTTATGGTGATTTTGTTT+TGG + chr5_2:1991258-1991277 Msa0748730:CDS 30.0%
TGTCTTCTAGTAGAAATTCA+GGG + chr5_2:1991467-1991486 Msa0748730:CDS 30.0%
TAACATTGGATCTTTGACAT+AGG - chr5_2:1992057-1992076 None:intergenic 30.0%
! TCAAGGGATTTAAAACTTTG+GGG - chr5_2:1992225-1992244 None:intergenic 30.0%
GCATTTATCTATTATCCTAG+TGG + chr5_2:1992321-1992340 Msa0748730:intron 30.0%
ACAATCTGACATAAGATTTG+TGG - chr5_2:1992369-1992388 None:intergenic 30.0%
AAGGGTAGACAAAAGAAAAT+GGG - chr5_2:1992775-1992794 None:intergenic 30.0%
AAAGGGTAGACAAAAGAAAA+TGG - chr5_2:1992776-1992795 None:intergenic 30.0%
!! AAGGTCTTGTTATTGTAGTA+AGG + chr5_2:1993019-1993038 Msa0748730:intron 30.0%
GATTTGGGTACATACATTTA+TGG + chr5_2:1993121-1993140 Msa0748730:intron 30.0%
ATTACATATACAGTCGTTGT+AGG + chr5_2:1993168-1993187 Msa0748730:intron 30.0%
ATAAGAAACTACCAACATTC+AGG + chr5_2:1993298-1993317 Msa0748730:intron 30.0%
TAAGAAACTACCAACATTCA+GGG + chr5_2:1993299-1993318 Msa0748730:intron 30.0%
GTTTAATAAACCCTGAATGT+TGG - chr5_2:1993312-1993331 None:intergenic 30.0%
!!! CTTCGTTGCATTTTTTAATC+TGG - chr5_2:1993364-1993383 None:intergenic 30.0%
CAGATTAAAAAATGCAACGA+AGG + chr5_2:1993362-1993381 Msa0748730:intron 30.0%
AAAAAGTAGAAGATGAGGAT+CGG - chr5_2:1993474-1993493 None:intergenic 30.0%
CCAAAAAAATAAAGTTAGGG+TGG - chr5_2:1993633-1993652 None:intergenic 30.0%
!!! CCACCCTAACTTTATTTTTT+TGG + chr5_2:1993630-1993649 Msa0748730:intron 30.0%
!!! ATTGGAAAAGATTGTTTTGG+AGG + chr5_2:1993662-1993681 Msa0748730:CDS 30.0%
!! ACTTTTTGGCCATACTATTT+GGG - chr5_2:1993755-1993774 None:intergenic 30.0%
!! TACTTTTTGGCCATACTATT+TGG - chr5_2:1993756-1993775 None:intergenic 30.0%
! GCTTCTGTTCTATTTTCTTA+AGG + chr5_2:1993821-1993840 Msa0748730:intron 30.0%
TGGTTCAAAATTATTATGCC+TGG - chr5_2:1994354-1994373 None:intergenic 30.0%
AAAAGGAGTTAAAAGATCCA+GGG - chr5_2:1994488-1994507 None:intergenic 30.0%
AAAAAGGAGTTAAAAGATCC+AGG - chr5_2:1994489-1994508 None:intergenic 30.0%
TAATCAATTAGGAATGCAGT+TGG - chr5_2:1994611-1994630 None:intergenic 30.0%
ACTGCATTCCTAATTGATTA+TGG + chr5_2:1994611-1994630 Msa0748730:intron 30.0%
CTGCATTCCTAATTGATTAT+GGG + chr5_2:1994612-1994631 Msa0748730:intron 30.0%
ATAAGGTCCCATAATCAATT+AGG - chr5_2:1994622-1994641 None:intergenic 30.0%
TAATATCTAGTCTGGATTTG+TGG + chr5_2:1994854-1994873 Msa0748730:intron 30.0%
! TTGAATTTATGCTTTTCCTC+CGG + chr5_2:1995010-1995029 Msa0748730:intron 30.0%
! TTTGAAGTTTCAAGGACATT+GGG - chr5_2:1995100-1995119 None:intergenic 30.0%
!!! TTTTGAAGTTTCAAGGACAT+TGG - chr5_2:1995101-1995120 None:intergenic 30.0%
!!! TGGTTTTGGTTCAAAAATGA+TGG + chr5_2:1996058-1996077 Msa0748730:CDS 30.0%
!! TCTTTTGAAAAGCACACAAA+AGG + chr5_2:1996353-1996372 Msa0748730:CDS 30.0%
!! CTTTTGAAAAGCATACAAAG+GGG + chr5_2:1996399-1996418 Msa0748730:CDS 30.0%
TACATGTCTTCCATAAAAGT+AGG - chr5_2:1996736-1996755 None:intergenic 30.0%
TTGCTTCCAATAATCGTGAA+TGG - chr5_2:1990041-1990060 None:intergenic 35.0%
TTATTGGAAGCAAAAATGGG+AGG + chr5_2:1990048-1990067 Msa0748730:exon 35.0%
! TACCAACTGAACCTCTTTTA+CGG - chr5_2:1990143-1990162 None:intergenic 35.0%
! GGCTAATGATTTTGCTTCAT+GGG + chr5_2:1990341-1990360 Msa0748730:intron 35.0%
GGTGGTTCAAATAACAAATC+TGG + chr5_2:1990440-1990459 Msa0748730:CDS 35.0%
TTATTCTTCACCTGATGTAC+AGG + chr5_2:1990538-1990557 Msa0748730:CDS 35.0%
CATGCACATACATATCCTAA+AGG + chr5_2:1990907-1990926 Msa0748730:intron 35.0%
TGCATTTATCGGTATATACC+AGG + chr5_2:1991081-1991100 Msa0748730:intron 35.0%
ATTCCACCATAACAAAAGGT+TGG - chr5_2:1991165-1991184 None:intergenic 35.0%
GAGCAATTATTTGATTCTGC+TGG - chr5_2:1991189-1991208 None:intergenic 35.0%
! AGGACGATGAATCTAAAACT+GGG - chr5_2:1991378-1991397 None:intergenic 35.0%
! AAGGACGATGAATCTAAAAC+TGG - chr5_2:1991379-1991398 None:intergenic 35.0%
! AGATTCATCGTCCTTTAAGA+AGG + chr5_2:1991384-1991403 Msa0748730:CDS 35.0%
AGAACCAACATCCTTCTTAA+AGG - chr5_2:1991398-1991417 None:intergenic 35.0%
GTGTCTTCTAGTAGAAATTC+AGG + chr5_2:1991466-1991485 Msa0748730:CDS 35.0%
AATTCAGGGTTTCTTTCCAT+TGG + chr5_2:1991481-1991500 Msa0748730:CDS 35.0%
GTATAACTTAAGACCACCAA+TGG - chr5_2:1991500-1991519 None:intergenic 35.0%
! TGGTCTTAAGTTATACACAG+AGG + chr5_2:1991504-1991523 Msa0748730:CDS 35.0%
CATTGAAAAGACATCTGATG+AGG + chr5_2:1991558-1991577 Msa0748730:CDS 35.0%
!! TGATTCAGACATTGATGATG+AGG + chr5_2:1991654-1991673 Msa0748730:CDS 35.0%
ACAACATCATCGATGCAAAA+TGG + chr5_2:1991713-1991732 Msa0748730:CDS 35.0%
! TTTCTAGCAGAAATGGTTCT+TGG - chr5_2:1991940-1991959 None:intergenic 35.0%
! ATGCTTCTTTCTAGCAGAAA+TGG - chr5_2:1991947-1991966 None:intergenic 35.0%
! CTAGAAAGAAGCATGTTTCT+CGG + chr5_2:1991953-1991972 Msa0748730:CDS 35.0%
AAAGCCTCCAAAAGAATTCA+TGG + chr5_2:1992012-1992031 Msa0748730:CDS 35.0%
! AGTCGTACCATGAATTCTTT+TGG - chr5_2:1992022-1992041 None:intergenic 35.0%
TATTAATGCAAGGATCTTCG+TGG - chr5_2:1992191-1992210 None:intergenic 35.0%
AAATCCCTTGATTATTTGGC+TGG + chr5_2:1992234-1992253 Msa0748730:intron 35.0%
CTATTATCCTAGTGGTTTGA+TGG + chr5_2:1992329-1992348 Msa0748730:intron 35.0%
ATATGTGTCAGCAAAATGAG+TGG - chr5_2:1992593-1992612 None:intergenic 35.0%
! TTTTCTCAAGATCAACACCT+CGG - chr5_2:1992686-1992705 None:intergenic 35.0%
TCGAGTCAGAGAACTTATAT+GGG - chr5_2:1992996-1993015 None:intergenic 35.0%
ATCGAGTCAGAGAACTTATA+TGG - chr5_2:1992997-1993016 None:intergenic 35.0%
GGAAGTTGTGTGATTAGATT+AGG + chr5_2:1993040-1993059 Msa0748730:intron 35.0%
TTTATATCTCTGATGACCCT+TGG + chr5_2:1993091-1993110 Msa0748730:intron 35.0%
TGCACAAAAAGTAGAAGATG+AGG - chr5_2:1993479-1993498 None:intergenic 35.0%
AGATTGATGAGGAGCAAAAA+TGG - chr5_2:1993513-1993532 None:intergenic 35.0%
TACACAAGGTAAACAGAAGT+CGG - chr5_2:1993798-1993817 None:intergenic 35.0%
TCTCAGTTCTCCATGAATAT+AGG + chr5_2:1994711-1994730 Msa0748730:intron 35.0%
! TGAATTTATGCTTTTCCTCC+GGG + chr5_2:1995011-1995030 Msa0748730:intron 35.0%
AGGAAAAATGAGTGGAAGAT+GGG - chr5_2:1995067-1995086 None:intergenic 35.0%
TAGGAAAAATGAGTGGAAGA+TGG - chr5_2:1995068-1995087 None:intergenic 35.0%
TTGAAGTTTCAAGGACATTG+GGG - chr5_2:1995099-1995118 None:intergenic 35.0%
!! AACTGCTATTTCAAAGACTC+CGG + chr5_2:1995187-1995206 Msa0748730:intron 35.0%
GAGAAAATACGTGTCAAAAG+AGG + chr5_2:1995443-1995462 Msa0748730:intron 35.0%
AAAATACGTGTCAAAAGAGG+AGG + chr5_2:1995446-1995465 Msa0748730:intron 35.0%
TTAGTTCAACCCGTAACAAA+CGG + chr5_2:1995636-1995655 Msa0748730:intron 35.0%
TTTCGTGAACTTCAGTTGTT+AGG + chr5_2:1995669-1995688 Msa0748730:intron 35.0%
!! GGAAGTTGATTTTTCTGTCA+TGG + chr5_2:1995704-1995723 Msa0748730:CDS 35.0%
AGACAGCAAGAACTTCAATT+TGG + chr5_2:1995801-1995820 Msa0748730:CDS 35.0%
GTAAAGTGAAGGACAATAGA+GGG + chr5_2:1995865-1995884 Msa0748730:CDS 35.0%
! TAACTTGTACAGTTTCTGAG+TGG - chr5_2:1995950-1995969 None:intergenic 35.0%
! ACTGATAGTGCAGATAAGAA+GGG + chr5_2:1995990-1996009 Msa0748730:CDS 35.0%
!!! TGCTAATGTTGGTTCTTTTG+AGG + chr5_2:1996025-1996044 Msa0748730:CDS 35.0%
ACCAAAAGTTCTTCAAGAGT+TGG + chr5_2:1996245-1996264 Msa0748730:CDS 35.0%
! ACCAACTCTTGAAGAACTTT+TGG - chr5_2:1996249-1996268 None:intergenic 35.0%
ACAAAAGGATCTTCAACTTC+AGG + chr5_2:1996323-1996342 Msa0748730:CDS 35.0%
ACAAAAGGATCTTCAACTTC+AGG + chr5_2:1996323-1996342 Msa0748730:CDS 35.0%
! ATCAAAGATGATGGCAAAGA+TGG + chr5_2:1996427-1996446 Msa0748730:CDS 35.0%
! TCAAAGATGATGGCAAAGAT+GGG + chr5_2:1996428-1996447 Msa0748730:CDS 35.0%
TTTGTTGAAGGTTCAGGATT+AGG + chr5_2:1996452-1996471 Msa0748730:CDS 35.0%
! TTAAGTGTTGTGATCTTACG+TGG + chr5_2:1996603-1996622 Msa0748730:three_prime_UTR 35.0%
!! AAAACTCGGTCCTACTTTTA+TGG + chr5_2:1996723-1996742 Msa0748730:three_prime_UTR 35.0%
! AACCTCTTTTACGGGTTTTC+GGG - chr5_2:1990134-1990153 None:intergenic 40.0%
! GAACCTCTTTTACGGGTTTT+CGG - chr5_2:1990135-1990154 None:intergenic 40.0%
! ACCAACTGAACCTCTTTTAC+GGG - chr5_2:1990142-1990161 None:intergenic 40.0%
! AAGGTGGATTCTTATCCGAT+TGG + chr5_2:1990181-1990200 Msa0748730:CDS 40.0%
! AGGTGGATTCTTATCCGATT+GGG + chr5_2:1990182-1990201 Msa0748730:CDS 40.0%
! GGGCTAATGATTTTGCTTCA+TGG + chr5_2:1990340-1990359 Msa0748730:intron 40.0%
!! ATTTGGGTTGCAGGTAGAAA+TGG + chr5_2:1990419-1990438 Msa0748730:intron 40.0%
!! GAAGCATCCGGTTCTAAAAA+TGG + chr5_2:1990479-1990498 Msa0748730:CDS 40.0%
TGCAAACAAACCTGTACATC+AGG - chr5_2:1990551-1990570 None:intergenic 40.0%
GTGTGTGCTTAAATGTTCGA+AGG - chr5_2:1990703-1990722 None:intergenic 40.0%
ATGTTGTGTCGTGTCTTTGT+CGG + chr5_2:1990772-1990791 Msa0748730:intron 40.0%
CTGAAAGATGCTTACTCACA+AGG + chr5_2:1990805-1990824 Msa0748730:intron 40.0%
ATTGGGAACAACAATGGAGA+TGG + chr5_2:1991121-1991140 Msa0748730:CDS 40.0%
TGGGATTCCACCATAACAAA+AGG - chr5_2:1991169-1991188 None:intergenic 40.0%
TTGGGAGATAGTTCTCATAG+AGG + chr5_2:1991277-1991296 Msa0748730:CDS 40.0%
GATAGTTCTCATAGAGGACT+AGG + chr5_2:1991283-1991302 Msa0748730:CDS 40.0%
!! ATGATGTGATAGTGCCACTT+GGG - chr5_2:1991333-1991352 None:intergenic 40.0%
! GGACGATGAATCTAAAACTG+GGG - chr5_2:1991377-1991396 None:intergenic 40.0%
! TCGTCCTTTAAGAAGGATGT+TGG + chr5_2:1991391-1991410 Msa0748730:CDS 40.0%
GGATAGAAACTGTGATCAGA+TGG + chr5_2:1991423-1991442 Msa0748730:CDS 40.0%
CTACTAGAAGACACCTTTGA+TGG - chr5_2:1991460-1991479 None:intergenic 40.0%
GAAAAGACATCTGATGAGGA+CGG + chr5_2:1991562-1991581 Msa0748730:CDS 40.0%
!! TCTTCTGAGCAAGAAGTACT+TGG + chr5_2:1991592-1991611 Msa0748730:CDS 40.0%
TGAGGTTGCAGAAGATTATC+TGG + chr5_2:1991672-1991691 Msa0748730:CDS 40.0%
GTTGCAGAAGATTATCTGGA+AGG + chr5_2:1991676-1991695 Msa0748730:CDS 40.0%
GAAGATTATCTGGAAGGAGT+TGG + chr5_2:1991682-1991701 Msa0748730:CDS 40.0%
GATGATGATAGTTCTTCCAG+CGG + chr5_2:1991763-1991782 Msa0748730:CDS 40.0%
TTTCATCATGCCATATTCCC+TGG - chr5_2:1991842-1991861 None:intergenic 40.0%
AAAGGAACGTGCTTCTTTAC+AGG - chr5_2:1991886-1991905 None:intergenic 40.0%
ATCAGGTCATCCAGAGTAAA+AGG - chr5_2:1991904-1991923 None:intergenic 40.0%
TTTCTCGGTTTCCTCATTCT+TGG + chr5_2:1991968-1991987 Msa0748730:CDS 40.0%
TTGCTCTTCTGAGTATGTGA+AGG - chr5_2:1991994-1992013 None:intergenic 40.0%
! CGTACCATGAATTCTTTTGG+AGG - chr5_2:1992019-1992038 None:intergenic 40.0%
CATTGGATCTTTGACATAGG+TGG - chr5_2:1992054-1992073 None:intergenic 40.0%
CCATCCAGCCAAATAATCAA+GGG - chr5_2:1992241-1992260 None:intergenic 40.0%
ACCATCCAGCCAAATAATCA+AGG - chr5_2:1992242-1992261 None:intergenic 40.0%
TGCTGACACATATTCTGTAC+AGG + chr5_2:1992600-1992619 Msa0748730:intron 40.0%
! AAGTTCTCTGACTCGATGAA+AGG + chr5_2:1993000-1993019 Msa0748730:intron 40.0%
TGGGTACATACATTTATGGC+AGG + chr5_2:1993125-1993144 Msa0748730:intron 40.0%
ACATATACAGTCGTTGTAGG+AGG + chr5_2:1993171-1993190 Msa0748730:intron 40.0%
! TTCCTTTTGATGCCTCTCAA+AGG - chr5_2:1993203-1993222 None:intergenic 40.0%
ACTCATTCTAATCATGGGAG+TGG - chr5_2:1993449-1993468 None:intergenic 40.0%
CGGACACTCATTCTAATCAT+GGG - chr5_2:1993454-1993473 None:intergenic 40.0%
TCGGACACTCATTCTAATCA+TGG - chr5_2:1993455-1993474 None:intergenic 40.0%
GTTACCATGCTTGACTCATT+TGG + chr5_2:1993600-1993619 Msa0748730:intron 40.0%
AACTCCAAATGAGTCAAGCA+TGG - chr5_2:1993607-1993626 None:intergenic 40.0%
! CCATACTATTTGGGACAGAA+AGG - chr5_2:1993746-1993765 None:intergenic 40.0%
CCTTTCTGTCCCAAATAGTA+TGG + chr5_2:1993743-1993762 Msa0748730:intron 40.0%
CTTCTGTTTACCTTGTGTAC+TGG + chr5_2:1993799-1993818 Msa0748730:intron 40.0%
!! TTAGTCTGGTGGTATTGACT+TGG + chr5_2:1993971-1993990 Msa0748730:intron 40.0%
!! GGATCTTAACCCATTGACTT+GGG + chr5_2:1994003-1994022 Msa0748730:intron 40.0%
! ATTCTCTCCGGTGCTAATTT+GGG + chr5_2:1994063-1994082 Msa0748730:intron 40.0%
! TTGGTATTTTCTTCCATGCC+AGG + chr5_2:1994455-1994474 Msa0748730:intron 40.0%
GATGCAACCCAAGAGTTTAA+AGG - chr5_2:1994544-1994563 None:intergenic 40.0%
TAGAACTGCACTGCTACAAT+GGG - chr5_2:1994578-1994597 None:intergenic 40.0%
TTAGAACTGCACTGCTACAA+TGG - chr5_2:1994579-1994598 None:intergenic 40.0%
GGAGAACTGAGATCATTACA+GGG - chr5_2:1994703-1994722 None:intergenic 40.0%
TGGAGAACTGAGATCATTAC+AGG - chr5_2:1994704-1994723 None:intergenic 40.0%
CTCCATGAATATAGGTACAG+CGG + chr5_2:1994719-1994738 Msa0748730:intron 40.0%
AACCGCTGTACCTATATTCA+TGG - chr5_2:1994724-1994743 None:intergenic 40.0%
ATGAATATAGGTACAGCGGT+TGG + chr5_2:1994723-1994742 Msa0748730:intron 40.0%
! ACCTTCTTTTCCCAGAACTT+TGG - chr5_2:1994777-1994796 None:intergenic 40.0%
TCAGATTTGTGACAGTGATG+CGG + chr5_2:1994879-1994898 Msa0748730:intron 40.0%
! CACAGAATAGAACCTTTTCC+AGG - chr5_2:1994946-1994965 None:intergenic 40.0%
CTGGAAAAGGTTCTATTCTG+TGG + chr5_2:1994944-1994963 Msa0748730:intron 40.0%
GGAAGAGTAGGAAAAATGAG+TGG - chr5_2:1995075-1995094 None:intergenic 40.0%
!! ACTGCTATTTCAAAGACTCC+GGG + chr5_2:1995188-1995207 Msa0748730:intron 40.0%
! TTTTTACAGCAGAGACTGAG+AGG + chr5_2:1995242-1995261 Msa0748730:intron 40.0%
! TAGTCAGAGTCCGTTTGTTA+CGG - chr5_2:1995649-1995668 None:intergenic 40.0%
!! GTTGTTAGGAGTTGATGAAG+AGG + chr5_2:1995683-1995702 Msa0748730:intron 40.0%
GGATCCTATGAACAAGAAGT+CGG + chr5_2:1995725-1995744 Msa0748730:CDS 40.0%
CGTAAAGTGAAGGACAATAG+AGG + chr5_2:1995864-1995883 Msa0748730:CDS 40.0%
!! CCAGTGTCATTTGTATCAAG+CGG + chr5_2:1995918-1995937 Msa0748730:CDS 40.0%
! GACTGATAGTGCAGATAAGA+AGG + chr5_2:1995989-1996008 Msa0748730:CDS 40.0%
!!! TCTTTTGAGGTACACACTAC+TGG + chr5_2:1996038-1996057 Msa0748730:CDS 40.0%
GCTAAAATGGGATACACTGA+AGG + chr5_2:1996080-1996099 Msa0748730:CDS 40.0%
AAAATGGGATACACTGAAGG+AGG + chr5_2:1996083-1996102 Msa0748730:CDS 40.0%
AAATGGGATACACTGAAGGA+GGG + chr5_2:1996084-1996103 Msa0748730:CDS 40.0%
ACACCCAAACCAAGTGATTT+CGG - chr5_2:1996164-1996183 None:intergenic 40.0%
!! CAATGTTGATGATCCAGCAA+GGG + chr5_2:1996196-1996215 Msa0748730:CDS 40.0%
! TCTTCTGAAAAGCGTACCAA+AGG + chr5_2:1996269-1996288 Msa0748730:CDS 40.0%
ACCAAAGGCTCTTCAAGTAT+TGG + chr5_2:1996284-1996303 Msa0748730:CDS 40.0%
ACCAATACTTGAAGAGCCTT+TGG - chr5_2:1996288-1996307 None:intergenic 40.0%
GGATCTTCAACTTCAGGTAT+TGG + chr5_2:1996329-1996348 Msa0748730:CDS 40.0%
GGATCTTCAACTTCAGGTAT+TGG + chr5_2:1996329-1996348 Msa0748730:CDS 40.0%
! GAAAAGCATACAAAGGGGTT+TGG + chr5_2:1996404-1996423 Msa0748730:CDS 40.0%
!! GCAAAGATGGGATTTGTTGA+AGG + chr5_2:1996440-1996459 Msa0748730:CDS 40.0%
!! ATGGGATTTGTTGAAGGTTC+AGG + chr5_2:1996446-1996465 Msa0748730:CDS 40.0%
GGATTAGGTAGAGAATCACA+AGG + chr5_2:1996467-1996486 Msa0748730:CDS 40.0%
! ACAAGGTATTACTGCTCCAT+TGG + chr5_2:1996484-1996503 Msa0748730:CDS 40.0%
! CAAGGTATTACTGCTCCATT+GGG + chr5_2:1996485-1996504 Msa0748730:CDS 40.0%
TTACCAAAGTCACGAGGATT+GGG + chr5_2:1996518-1996537 Msa0748730:CDS 40.0%
ATGGTCAGATTCAATGTAGC+AGG - chr5_2:1996775-1996794 None:intergenic 40.0%
GCTACATTGAATCTGACCAT+TGG + chr5_2:1996775-1996794 Msa0748730:three_prime_UTR 40.0%
TGATACTGAAGCTGTACCAA+TGG + chr5_2:1996827-1996846 Msa0748730:three_prime_UTR 40.0%
CTCGCTCCATTCACGATTAT+TGG + chr5_2:1990032-1990051 Msa0748730:five_prime_UTR 45.0%
TTGGAAGCAAAAATGGGAGG+TGG + chr5_2:1990051-1990070 Msa0748730:exon 45.0%
AGTAGAAGAGGAAGAGGTAG+AGG + chr5_2:1990075-1990094 Msa0748730:CDS 45.0%
AACCCGAAAACCCGTAAAAG+AGG + chr5_2:1990129-1990148 Msa0748730:CDS 45.0%
ACCCGTAAAAGAGGTTCAGT+TGG + chr5_2:1990138-1990157 Msa0748730:CDS 45.0%
!!! AGAGAAGCACTTTTCGTCGA+AGG + chr5_2:1990162-1990181 Msa0748730:CDS 45.0%
! GGTGGATTCTTATCCGATTG+GGG + chr5_2:1990183-1990202 Msa0748730:CDS 45.0%
GAATTGCGATTGGAAGAGGA+AGG - chr5_2:1990210-1990229 None:intergenic 45.0%
TCCTCTTCCAATCGCAATTC+AGG + chr5_2:1990210-1990229 Msa0748730:CDS 45.0%
ACCTGAATTGCGATTGGAAG+AGG - chr5_2:1990214-1990233 None:intergenic 45.0%
GAGAGAACCTGAATTGCGAT+TGG - chr5_2:1990220-1990239 None:intergenic 45.0%
AAATCTGGGAGTCTACGTAG+AGG + chr5_2:1990455-1990474 Msa0748730:CDS 45.0%
!! ACACTGTTCTGCTTTGAAGG+AGG - chr5_2:1991226-1991245 None:intergenic 45.0%
TCCTTCAAAGCAGAACAGTG+TGG + chr5_2:1991225-1991244 Msa0748730:CDS 45.0%
TCCACACTGTTCTGCTTTGA+AGG - chr5_2:1991229-1991248 None:intergenic 45.0%
!! TGATGTGATAGTGCCACTTG+GGG - chr5_2:1991332-1991351 None:intergenic 45.0%
! GATGATGTGATAGTGCCACT+TGG - chr5_2:1991334-1991353 None:intergenic 45.0%
!! GAAGGATGTTGGTTCTGATG+AGG + chr5_2:1991402-1991421 Msa0748730:CDS 45.0%
GGAAGAAGACTTGCCATCAA+AGG + chr5_2:1991444-1991463 Msa0748730:CDS 45.0%
TCAGGGTTTCTTTCCATTGG+TGG + chr5_2:1991484-1991503 Msa0748730:CDS 45.0%
GATTATCTGGAAGGAGTTGG+TGG + chr5_2:1991685-1991704 Msa0748730:CDS 45.0%
TTTACAGGTCTTTGCCTCCA+TGG - chr5_2:1991871-1991890 None:intergenic 45.0%
! GAAGCACGTTCCTTTTACTC+TGG + chr5_2:1991891-1991910 Msa0748730:CDS 45.0%
!! TTGGATCCTTTTCGAGCATC+AGG - chr5_2:1991921-1991940 None:intergenic 45.0%
GTATGTGAAGGCCAAGAATG+AGG - chr5_2:1991982-1992001 None:intergenic 45.0%
CCCTTGATTATTTGGCTGGA+TGG + chr5_2:1992238-1992257 Msa0748730:intron 45.0%
GCTGGATGGTTGAAATAGCA+GGG + chr5_2:1992252-1992271 Msa0748730:intron 45.0%
ATAGCAGGGCTGGAAAAAAC+TGG + chr5_2:1992266-1992285 Msa0748730:intron 45.0%
AGCTCATCCATCAAACCACT+AGG - chr5_2:1992339-1992358 None:intergenic 45.0%
GTGTCAGCAAAATGAGTGGT+TGG - chr5_2:1992589-1992608 None:intergenic 45.0%
! ACAAGCTTTTCGCGAACATC+TGG + chr5_2:1992927-1992946 Msa0748730:intron 45.0%
!! TGCCTTTGAGAGGCATCAAA+AGG + chr5_2:1993198-1993217 Msa0748730:intron 45.0%
GAGCAATCTCGAGAATGCAT+AGG - chr5_2:1993711-1993730 None:intergenic 45.0%
AGAACAGAAGCCAGTACACA+AGG - chr5_2:1993812-1993831 None:intergenic 45.0%
!! TAACCCATTGACTTGGGTCT+TGG + chr5_2:1994009-1994028 Msa0748730:intron 45.0%
!! AACCCATTGACTTGGGTCTT+GGG + chr5_2:1994010-1994029 Msa0748730:intron 45.0%
! GATTCTCTCCGGTGCTAATT+TGG + chr5_2:1994062-1994081 Msa0748730:intron 45.0%
GCCTGGTTGTGAAAGAAACA+GGG - chr5_2:1994337-1994356 None:intergenic 45.0%
TGCCTGGTTGTGAAAGAAAC+AGG - chr5_2:1994338-1994357 None:intergenic 45.0%
AAGATCCAGGGTTCAAATCC+TGG - chr5_2:1994476-1994495 None:intergenic 45.0%
AGAACTGCACTGCTACAATG+GGG - chr5_2:1994577-1994596 None:intergenic 45.0%
TGGCAGGAGTTTATCAGTTG+CGG + chr5_2:1994743-1994762 Msa0748730:CDS 45.0%
!! GCCAAAGTTCTGGGAAAAGA+AGG + chr5_2:1994773-1994792 Msa0748730:CDS 45.0%
AAGTTTCAAGGACATTGGGG+TGG - chr5_2:1995096-1995115 None:intergenic 45.0%
! AGTCAGAGTCCGTTTGTTAC+GGG - chr5_2:1995648-1995667 None:intergenic 45.0%
!! CTCACCGACTTCTTGTTCAT+AGG - chr5_2:1995732-1995751 None:intergenic 45.0%
!! AGTTCTTTGGTGTCTTGCTC+TGG - chr5_2:1995827-1995846 None:intergenic 45.0%
! TCTCTGCTGACTGAGTTCTT+TGG - chr5_2:1995840-1995859 None:intergenic 45.0%
CAGAGACAGACGTAAAGTGA+AGG + chr5_2:1995854-1995873 Msa0748730:CDS 45.0%
CCGCTTGATACAAATGACAC+TGG - chr5_2:1995921-1995940 None:intergenic 45.0%
AGAACCAACATTAGCAGAGC+TGG - chr5_2:1996021-1996040 None:intergenic 45.0%
!!! GAGGTACACACTACTGGTTT+TGG + chr5_2:1996044-1996063 Msa0748730:CDS 45.0%
AATGGGATACACTGAAGGAG+GGG + chr5_2:1996085-1996104 Msa0748730:CDS 45.0%
GGATTGGGGAAAAATGGTCA+AGG + chr5_2:1996107-1996126 Msa0748730:CDS 45.0%
GGGGAAAAATGGTCAAGGTA+TGG + chr5_2:1996112-1996131 Msa0748730:CDS 45.0%
AGCCCATTGAGGTTATCCAA+AGG + chr5_2:1996138-1996157 Msa0748730:CDS 45.0%
GGCCTTTGGATAACCTCAAT+GGG - chr5_2:1996143-1996162 None:intergenic 45.0%
ATCCAAAGGCCGAAATCACT+TGG + chr5_2:1996152-1996171 Msa0748730:CDS 45.0%
AACCAAGTGATTTCGGCCTT+TGG - chr5_2:1996157-1996176 None:intergenic 45.0%
AAGGCCGAAATCACTTGGTT+TGG + chr5_2:1996157-1996176 Msa0748730:CDS 45.0%
AGGCCGAAATCACTTGGTTT+GGG + chr5_2:1996158-1996177 Msa0748730:CDS 45.0%
!! GAAATCACTTGGTTTGGGTG+TGG + chr5_2:1996163-1996182 Msa0748730:CDS 45.0%
!! GCAATGTTGATGATCCAGCA+AGG + chr5_2:1996195-1996214 Msa0748730:CDS 45.0%
GGGGTTTGGATCAAAGATGA+TGG + chr5_2:1996418-1996437 Msa0748730:CDS 45.0%
GTTACCAAAGTCACGAGGAT+TGG + chr5_2:1996517-1996536 Msa0748730:CDS 45.0%
AACTCCACGAGTTCATCCAA+TGG - chr5_2:1996794-1996813 None:intergenic 45.0%
!!! ATTAAATAAAGTTTTTATAT+TGG + chr5_2:1994244-1994263 Msa0748730:intron 5.0%
!!! TTAAAAAAGTTATTTTTATT+AGG + chr5_2:1995532-1995551 Msa0748730:intron 5.0%
ATGGGAGGTGGAAGTAGAAG+AGG + chr5_2:1990063-1990082 Msa0748730:CDS 50.0%
GGTGGAAGTAGAAGAGGAAG+AGG + chr5_2:1990069-1990088 Msa0748730:CDS 50.0%
AGAGGAAGATCCAACACCAG+CGG + chr5_2:1990093-1990112 Msa0748730:CDS 50.0%
!! GAAGCACTTTTCGTCGAAGG+TGG + chr5_2:1990165-1990184 Msa0748730:CDS 50.0%
TGGGTTGCAGGTAGAAATGG+TGG + chr5_2:1990422-1990441 Msa0748730:intron 50.0%
!! CTACGTAGAGGAGAAGCATC+CGG + chr5_2:1990467-1990486 Msa0748730:CDS 50.0%
ATATACCAGGAAGTCTCGCG+TGG + chr5_2:1991094-1991113 Msa0748730:intron 50.0%
GGTGGGATTGGGAACAACAA+TGG + chr5_2:1991115-1991134 Msa0748730:CDS 50.0%
! GCTGCGCCAACCTTTTGTTA+TGG + chr5_2:1991156-1991175 Msa0748730:CDS 50.0%
!! GCGCCAACCTTTTGTTATGG+TGG + chr5_2:1991159-1991178 Msa0748730:CDS 50.0%
GGGTTTCGTCATGTTCAGCA+TGG - chr5_2:1991312-1991331 None:intergenic 50.0%
GAACATGACGAAACCCCAAG+TGG + chr5_2:1991316-1991335 Msa0748730:CDS 50.0%
ATGGTTGCTAGACCCTGTTG+TGG + chr5_2:1991732-1991751 Msa0748730:CDS 50.0%
! CATCTGACTCGTCCACAACA+GGG - chr5_2:1991747-1991766 None:intergenic 50.0%
! TCATCTGACTCGTCCACAAC+AGG - chr5_2:1991748-1991767 None:intergenic 50.0%
AGTTCTTCCAGCGGTAGCTA+TGG + chr5_2:1991772-1991791 Msa0748730:CDS 50.0%
!! TGGTGAGGCTTTGGAGAAGT+TGG + chr5_2:1991792-1991811 Msa0748730:CDS 50.0%
!! GGTGAGGCTTTGGAGAAGTT+GGG + chr5_2:1991793-1991812 Msa0748730:CDS 50.0%
CATCATGCCATATTCCCTGG+AGG - chr5_2:1991839-1991858 None:intergenic 50.0%
GCATGATGAAAGCCCAACCA+TGG + chr5_2:1991851-1991870 Msa0748730:CDS 50.0%
TGATGAAAGCCCAACCATGG+AGG + chr5_2:1991854-1991873 Msa0748730:CDS 50.0%
AGGTCTTTGCCTCCATGGTT+GGG - chr5_2:1991866-1991885 None:intergenic 50.0%
GGATGACCTGATGCTCGAAA+AGG + chr5_2:1991912-1991931 Msa0748730:CDS 50.0%
GGCTGGATGGTTGAAATAGC+AGG + chr5_2:1992251-1992270 Msa0748730:intron 50.0%
GATGGTTGAAATAGCAGGGC+TGG + chr5_2:1992256-1992275 Msa0748730:intron 50.0%
ACTGTGTGTGAGCATGAGCA+GGG - chr5_2:1992558-1992577 None:intergenic 50.0%
TACTGTGTGTGAGCATGAGC+AGG - chr5_2:1992559-1992578 None:intergenic 50.0%
GCTCATGCTCACACACAGTA+TGG + chr5_2:1992559-1992578 Msa0748730:intron 50.0%
AGAGAGAGAATGCAACACCG+AGG + chr5_2:1992666-1992685 Msa0748730:CDS 50.0%
TCTGATGACCCTTGGAGTGT+GGG + chr5_2:1993099-1993118 Msa0748730:intron 50.0%
ACCCTTGGAGTGTGGGATTT+GGG + chr5_2:1993106-1993125 Msa0748730:intron 50.0%
ACCCAAATCCCACACTCCAA+GGG - chr5_2:1993110-1993129 None:intergenic 50.0%
TACCCAAATCCCACACTCCA+AGG - chr5_2:1993111-1993130 None:intergenic 50.0%
! AGGAGGCATATGCCTTTGAG+AGG + chr5_2:1993188-1993207 Msa0748730:intron 50.0%
GCATTCTCGAGATTGCTCAC+AGG + chr5_2:1993713-1993732 Msa0748730:CDS 50.0%
ATTGCGGATACCAACCCACT+TGG + chr5_2:1993947-1993966 Msa0748730:intron 50.0%
TTGCGGATACCAACCCACTT+GGG + chr5_2:1993948-1993967 Msa0748730:intron 50.0%
ACCACCAGACTAACCCAAGT+GGG - chr5_2:1993964-1993983 None:intergenic 50.0%
TACCACCAGACTAACCCAAG+TGG - chr5_2:1993965-1993984 None:intergenic 50.0%
!! GTCTGGTGGTATTGACTTGG+TGG + chr5_2:1993974-1993993 Msa0748730:intron 50.0%
CTCCCAAGACCCAAGTCAAT+GGG - chr5_2:1994015-1994034 None:intergenic 50.0%
ACTCCCAAGACCCAAGTCAA+TGG - chr5_2:1994016-1994035 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+AGG - chr5_2:1994047-1994066 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG + chr5_2:1994051-1994070 Msa0748730:intron 50.0%
! TCTCCGGTGCTAATTTGGGT+GGG + chr5_2:1994067-1994086 Msa0748730:intron 50.0%
TAGCCCACCCAAATTAGCAC+CGG - chr5_2:1994073-1994092 None:intergenic 50.0%
! GCCCTGTTTCTTTCACAACC+AGG + chr5_2:1994333-1994352 Msa0748730:intron 50.0%
ATATAGGTACAGCGGTTGGC+AGG + chr5_2:1994727-1994746 Msa0748730:intron 50.0%
GGAGTAGCAGCCAAAGTTCT+GGG + chr5_2:1994764-1994783 Msa0748730:CDS 50.0%
ACATCGATGCCATCTGCAAG+TGG + chr5_2:1994911-1994930 Msa0748730:CDS 50.0%
TCAAGGGCAGTGATGAAACC+CGG - chr5_2:1995032-1995051 None:intergenic 50.0%
ACTGCCCTTGAGATACAGAG+TGG + chr5_2:1995041-1995060 Msa0748730:intron 50.0%
TGGGCCACTCTGTATCTCAA+GGG - chr5_2:1995048-1995067 None:intergenic 50.0%
ATGGGCCACTCTGTATCTCA+AGG - chr5_2:1995049-1995068 None:intergenic 50.0%
ACCAACATTAGCAGAGCTGG+TGG - chr5_2:1996018-1996037 None:intergenic 50.0%
ATGGGATACACTGAAGGAGG+GGG + chr5_2:1996086-1996105 Msa0748730:CDS 50.0%
ATACACTGAAGGAGGGGGAT+TGG + chr5_2:1996091-1996110 Msa0748730:CDS 50.0%
TACACTGAAGGAGGGGGATT+GGG + chr5_2:1996092-1996111 Msa0748730:CDS 50.0%
CGGCCTTTGGATAACCTCAA+TGG - chr5_2:1996144-1996163 None:intergenic 50.0%
GATCCAGCAAGGGACAGTAT+CGG + chr5_2:1996206-1996225 Msa0748730:CDS 50.0%
GTTCGGTTACCAAAGTCACG+AGG + chr5_2:1996512-1996531 Msa0748730:CDS 50.0%
CTGACCATTGGATGAACTCG+TGG + chr5_2:1996787-1996806 Msa0748730:three_prime_UTR 50.0%
AGATCCAACACCAGCGGAAG+CGG + chr5_2:1990099-1990118 Msa0748730:CDS 55.0%
GGAAGAGGAAGGACCCCAAT+CGG - chr5_2:1990199-1990218 None:intergenic 55.0%
! AAGTCTCGCGTGGTGGGATT+GGG + chr5_2:1991104-1991123 Msa0748730:CDS 55.0%
TTCCAGCGGTAGCTATGGTG+AGG + chr5_2:1991777-1991796 Msa0748730:CDS 55.0%
CGGTAGCTATGGTGAGGCTT+TGG + chr5_2:1991783-1991802 Msa0748730:CDS 55.0%
!! GAGGCTTTGGAGAAGTTGGG+TGG + chr5_2:1991796-1991815 Msa0748730:CDS 55.0%
TATCCCTTCAAGACGCCTCC+AGG + chr5_2:1991821-1991840 Msa0748730:CDS 55.0%
ATCCCTTCAAGACGCCTCCA+GGG + chr5_2:1991822-1991841 Msa0748730:CDS 55.0%
!! TTCCCTGGAGGCGTCTTGAA+GGG - chr5_2:1991827-1991846 None:intergenic 55.0%
!! ATTCCCTGGAGGCGTCTTGA+AGG - chr5_2:1991828-1991847 None:intergenic 55.0%
CAAGACGCCTCCAGGGAATA+TGG + chr5_2:1991829-1991848 Msa0748730:CDS 55.0%
CAGGTCTTTGCCTCCATGGT+TGG - chr5_2:1991867-1991886 None:intergenic 55.0%
CTGTGTGTGAGCATGAGCAG+GGG - chr5_2:1992557-1992576 None:intergenic 55.0%
CTCTGATGACCCTTGGAGTG+TGG + chr5_2:1993098-1993117 Msa0748730:intron 55.0%
GACCCTTGGAGTGTGGGATT+TGG + chr5_2:1993105-1993124 Msa0748730:intron 55.0%
CCAGACTAACCCAAGTGGGT+TGG - chr5_2:1993960-1993979 None:intergenic 55.0%
!! CCAACCCACTTGGGTTAGTC+TGG + chr5_2:1993957-1993976 Msa0748730:intron 55.0%
!! ACCCACTTGGGTTAGTCTGG+TGG + chr5_2:1993960-1993979 Msa0748730:intron 55.0%
TCGAACCTGAGACCTTGAGG+AGG - chr5_2:1994044-1994063 None:intergenic 55.0%
! CTCTCCGGTGCTAATTTGGG+TGG + chr5_2:1994066-1994085 Msa0748730:intron 55.0%
CCAGGGTTCAAATCCTGGCA+TGG - chr5_2:1994471-1994490 None:intergenic 55.0%
CCATGCCAGGATTTGAACCC+TGG + chr5_2:1994468-1994487 Msa0748730:intron 55.0%
TGCACTGCTACAATGGGGTG+GGG - chr5_2:1994572-1994591 None:intergenic 55.0%
CTGCACTGCTACAATGGGGT+GGG - chr5_2:1994573-1994592 None:intergenic 55.0%
ACTGCACTGCTACAATGGGG+TGG - chr5_2:1994574-1994593 None:intergenic 55.0%
! CAACCTGTTCTGAGCAGCGT+TGG + chr5_2:1994677-1994696 Msa0748730:intron 55.0%
CGGAGTAGCAGCCAAAGTTC+TGG + chr5_2:1994763-1994782 Msa0748730:CDS 55.0%
CGCTGTCTACCACTTGCAGA+TGG - chr5_2:1994923-1994942 None:intergenic 55.0%
TGGTAGACAGCGCCTGGAAA+AGG + chr5_2:1994931-1994950 Msa0748730:CDS 55.0%
GGACATTGGGGTGGAAGAGT+AGG - chr5_2:1995087-1995106 None:intergenic 55.0%
GCCACCAGCTCTGCTAATGT+TGG + chr5_2:1996014-1996033 Msa0748730:CDS 55.0%
ACACTGAAGGAGGGGGATTG+GGG + chr5_2:1996093-1996112 Msa0748730:CDS 55.0%
GGAGGGGGATTGGGGAAAAA+TGG + chr5_2:1996101-1996120 Msa0748730:CDS 55.0%
AGGTATGGCTCAGCCCATTG+AGG + chr5_2:1996127-1996146 Msa0748730:CDS 55.0%
! GTACCGATACTGTCCCTTGC+TGG - chr5_2:1996212-1996231 None:intergenic 55.0%
ACTACCGCTTCCGCTGGTGT+TGG - chr5_2:1990106-1990125 None:intergenic 60.0%
AACACCAGCGGAAGCGGTAG+TGG + chr5_2:1990105-1990124 Msa0748730:CDS 60.0%
GTTTCCACTACCGCTTCCGC+TGG - chr5_2:1990112-1990131 None:intergenic 60.0%
TACCAGGAAGTCTCGCGTGG+TGG + chr5_2:1991097-1991116 Msa0748730:intron 60.0%
ACCAGGAAGTCTCGCGTGGT+GGG + chr5_2:1991098-1991117 Msa0748730:intron 60.0%
! GAAGTCTCGCGTGGTGGGAT+TGG + chr5_2:1991103-1991122 Msa0748730:CDS 60.0%
AGCCTCACCATAGCTACCGC+TGG - chr5_2:1991782-1991801 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG + chr5_2:1994029-1994048 Msa0748730:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + chr5_2:1994036-1994055 Msa0748730:intron 60.0%
TGCTACAATGGGGTGGGGGT+GGG - chr5_2:1994567-1994586 None:intergenic 60.0%
GCACTGCTACAATGGGGTGG+GGG - chr5_2:1994571-1994590 None:intergenic 60.0%
TGCAAGTGGTAGACAGCGCC+TGG + chr5_2:1994925-1994944 Msa0748730:CDS 60.0%
AGGGCAGTGATGAAACCCGG+AGG - chr5_2:1995029-1995048 None:intergenic 60.0%
! CTGCTCCATTGGGCGCTGTT+CGG + chr5_2:1996495-1996514 Msa0748730:CDS 60.0%
GGTAACCGAACAGCGCCCAA+TGG - chr5_2:1996503-1996522 None:intergenic 60.0%
GCGCCCAATCCTCGTGACTT+TGG - chr5_2:1996524-1996543 None:intergenic 60.0%
TCACGAGGATTGGGCGCCAA+AGG + chr5_2:1996527-1996546 Msa0748730:CDS 60.0%
TCCCACCACGCGAGACTTCC+TGG - chr5_2:1991102-1991121 None:intergenic 65.0%
GCTACAATGGGGTGGGGGTG+GGG - chr5_2:1994566-1994585 None:intergenic 65.0%
CTGCTACAATGGGGTGGGGG+TGG - chr5_2:1994568-1994587 None:intergenic 65.0%
GGGCCAACGCTGCTCAGAAC+AGG - chr5_2:1994683-1994702 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1990003 1996854 1990003 ID=Msa0748730;Name=Msa0748730
chr5_2 mRNA 1990003 1996854 1990003 ID=Msa0748730-mRNA-1;Parent=Msa0748730;Name=Msa0748730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=60|1|1|1|1|1|8|301|798
chr5_2 exon 1990003 1990231 1990003 ID=Msa0748730-mRNA-1:exon:586;Parent=Msa0748730-mRNA-1
chr5_2 exon 1990432 1990559 1990432 ID=Msa0748730-mRNA-1:exon:587;Parent=Msa0748730-mRNA-1
chr5_2 exon 1991103 1992033 1991103 ID=Msa0748730-mRNA-1:exon:588;Parent=Msa0748730-mRNA-1
chr5_2 exon 1992622 1992713 1992622 ID=Msa0748730-mRNA-1:exon:589;Parent=Msa0748730-mRNA-1
chr5_2 exon 1993660 1993734 1993660 ID=Msa0748730-mRNA-1:exon:590;Parent=Msa0748730-mRNA-1
chr5_2 exon 1994733 1994794 1994733 ID=Msa0748730-mRNA-1:exon:591;Parent=Msa0748730-mRNA-1
chr5_2 exon 1994883 1994952 1994883 ID=Msa0748730-mRNA-1:exon:592;Parent=Msa0748730-mRNA-1
chr5_2 exon 1995684 1996854 1995684 ID=Msa0748730-mRNA-1:exon:593;Parent=Msa0748730-mRNA-1
chr5_2 five_prime_UTR 1990003 1990062 1990003 ID=Msa0748730-mRNA-1:five_prime_utr;Parent=Msa0748730-mRNA-1
chr5_2 CDS 1990063 1990231 1990063 ID=Msa0748730-mRNA-1:cds;Parent=Msa0748730-mRNA-1
chr5_2 CDS 1990432 1990559 1990432 ID=Msa0748730-mRNA-1:cds;Parent=Msa0748730-mRNA-1
chr5_2 CDS 1991103 1992033 1991103 ID=Msa0748730-mRNA-1:cds;Parent=Msa0748730-mRNA-1
chr5_2 CDS 1992622 1992713 1992622 ID=Msa0748730-mRNA-1:cds;Parent=Msa0748730-mRNA-1
chr5_2 CDS 1993660 1993734 1993660 ID=Msa0748730-mRNA-1:cds;Parent=Msa0748730-mRNA-1
chr5_2 CDS 1994733 1994794 1994733 ID=Msa0748730-mRNA-1:cds;Parent=Msa0748730-mRNA-1
chr5_2 CDS 1994883 1994952 1994883 ID=Msa0748730-mRNA-1:cds;Parent=Msa0748730-mRNA-1
chr5_2 CDS 1995684 1996553 1995684 ID=Msa0748730-mRNA-1:cds;Parent=Msa0748730-mRNA-1
chr5_2 three_prime_UTR 1996554 1996854 1996554 ID=Msa0748730-mRNA-1:three_prime_utr;Parent=Msa0748730-mRNA-1
Gene Sequence

>Msa0748730

ATGGGAGGTGGAAGTAGAAGAGGAAGAGGTAGAGGAAGATCCAACACCAGCGGAAGCGGTAGTGGAAACCCGAAAACCCGTAAAAGAGGTTCAGTTGGTAGAGAAGCACTTTTCGTCGAAGGTGGATTCTTATCCGATTGGGGTCCTTCCTCTTCCAATCGCAATTCAGGTAGAAATGGTGGTTCAAATAACAAATCTGGGAGTCTACGTAGAGGAGAAGCATCCGGTTCTAAAAATGGATTTGCAAAATCTTTAGGGACTACTATTGCATTCAATTATTCTTCACCTGATGTACAGGAAGTCTCGCGTGGTGGGATTGGGAACAACAATGGAGATGGTAATTTAAATAAGCTGCGCCAACCTTTTGTTATGGTGGAATCCCAGCAGAATCAAATAATTGCTCATGAAGATCAAACACCTCCTTCAAAGCAGAACAGTGTGGAATATACATACAGTTATGGTGATTTTGTTTTGGGAGATAGTTCTCATAGAGGACTAGGTTTCCATGCTGAACATGACGAAACCCCAAGTGGCACTATCACATCATCAGAACAGATGCTACAATCAACCCCAGTTTTAGATTCATCGTCCTTTAAGAAGGATGTTGGTTCTGATGAGGATAGAAACTGTGATCAGATGGAAGAAGACTTGCCATCAAAGGTGTCTTCTAGTAGAAATTCAGGGTTTCTTTCCATTGGTGGTCTTAAGTTATACACAGAGGACATCTCAGATATTGAAAGTGAAGAAAATTACATTGAAAAGACATCTGATGAGGACGGCTCTGCGTCTTCTGAGCAAGAAGTACTTGGATCATCTGAAAGCGATTATTCTGAAGACACATCTGACAGTGATTCAGACATTGATGATGAGGTTGCAGAAGATTATCTGGAAGGAGTTGGTGGTAGTGACAACATCATCGATGCAAAATGGTTGCTAGACCCTGTTGTGGACGAGTCAGATGATGATAGTTCTTCCAGCGGTAGCTATGGTGAGGCTTTGGAGAAGTTGGGTGGTATATCCCTTCAAGACGCCTCCAGGGAATATGGCATGATGAAAGCCCAACCATGGAGGCAAAGACCTGTAAAGAAGCACGTTCCTTTTACTCTGGATGACCTGATGCTCGAAAAGGATCCAAGAACCATTTCTGCTAGAAAGAAGCATGTTTCTCGGTTTCCTCATTCTTGGCCTTCACATACTCAGAAGAGCAAAGCCTCCAAAAGAATTCATGGTGAAAAAAAGAAACTTCGTAAAGAAAGAATTGCTGTCAAGCGTAGAGAGAGAATGCAACACCGAGGTGTTGATCTTGAGAAAATTAATTCGAAATTGGAAAAGATTGTTTTGGAGGACGTAGACATGTACTCTTTTCAGCCTATGCATTCTCGAGATTGCTCACAGGTACAGCGGTTGGCAGGAGTTTATCAGTTGCGGAGTAGCAGCCAAAGTTCTGGGAAAAGAAGATTTGTGACAGTGATGCGGACACATTCTACATCGATGCCATCTGCAAGTGGTAGACAGCGCCTGGAAAAGTTGTTAGGAGTTGATGAAGAGGAAGTTGATTTTTCTGTCATGGATCCTATGAACAAGAAGTCGGTGAGTGAAGACAGAAGAAGACTGAGAAAGAAAAATGCTAAAAGGAATGATTTTAGACAGCAAGAACTTCAATTTGGCCAGAGCAAGACACCAAAGAACTCAGTCAGCAGAGACAGACGTAAAGTGAAGGACAATAGAGGGAGCGAACAAAAGAGTTCATATGCTAATCAGCCAGTGTCATTTGTATCAAGCGGCACAATCCACTCAGAAACTGTACAAGTTATTGCTGTTGATTCTGAAGAGACTGATAGTGCAGATAAGAAGGGTGCCACCAGCTCTGCTAATGTTGGTTCTTTTGAGGTACACACTACTGGTTTTGGTTCAAAAATGATGGCTAAAATGGGATACACTGAAGGAGGGGGATTGGGGAAAAATGGTCAAGGTATGGCTCAGCCCATTGAGGTTATCCAAAGGCCGAAATCACTTGGTTTGGGTGTGGAATTCTCTAGCAATGTTGATGATCCAGCAAGGGACAGTATCGGTACTTCTAAAAAGCATACCAAAAGTTCTTCAAGAGTTGGTTCTTCTGAAAAGCGTACCAAAGGCTCTTCAAGTATTGGTTCTTTTGAAAAGCATACAAAAGGATCTTCAACTTCAGGTATTGGTTCTTTTGAAAAGCACACAAAAGGATCTTCAACTTCAGGTATTGGTTCTTTTGAAAAGCATACAAAGGGGTTTGGATCAAAGATGATGGCAAAGATGGGATTTGTTGAAGGTTCAGGATTAGGTAGAGAATCACAAGGTATTACTGCTCCATTGGGCGCTGTTCGGTTACCAAAGTCACGAGGATTGGGCGCCAAAGGTTAA
Protein sequence

>Msa0748730

MGGGSRRGRGRGRSNTSGSGSGNPKTRKRGSVGREALFVEGGFLSDWGPSSSNRNSGRNGGSNNKSGSLRRGEASGSKNGFAKSLGTTIAFNYSSPDVQEVSRGGIGNNNGDGNLNKLRQPFVMVESQQNQIIAHEDQTPPSKQNSVEYTYSYGDFVLGDSSHRGLGFHAEHDETPSGTITSSEQMLQSTPVLDSSSFKKDVGSDEDRNCDQMEEDLPSKVSSSRNSGFLSIGGLKLYTEDISDIESEENYIEKTSDEDGSASSEQEVLGSSESDYSEDTSDSDSDIDDEVAEDYLEGVGGSDNIIDAKWLLDPVVDESDDDSSSSGSYGEALEKLGGISLQDASREYGMMKAQPWRQRPVKKHVPFTLDDLMLEKDPRTISARKKHVSRFPHSWPSHTQKSKASKRIHGEKKKLRKERIAVKRRERMQHRGVDLEKINSKLEKIVLEDVDMYSFQPMHSRDCSQVQRLAGVYQLRSSSQSSGKRRFVTVMRTHSTSMPSASGRQRLEKLLGVDEEEVDFSVMDPMNKKSVSEDRRRLRKKNAKRNDFRQQELQFGQSKTPKNSVSRDRRKVKDNRGSEQKSSYANQPVSFVSSGTIHSETVQVIAVDSEETDSADKKGATSSANVGSFEVHTTGFGSKMMAKMGYTEGGGLGKNGQGMAQPIEVIQRPKSLGLGVEFSSNVDDPARDSIGTSKKHTKSSSRVGSSEKRTKGSSSIGSFEKHTKGSSTSGIGSFEKHTKGSSTSGIGSFEKHTKGFGSKMMAKMGFVEGSGLGRESQGITAPLGAVRLPKSRGLGAKG*