AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0453070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453070 MtrunA17_Chr3g0098761 94.562 754 35 1 1 754 1 748 0.0 1470
Msa0453070 MtrunA17_Chr5g0444001 70.275 545 150 2 1 539 1 539 0.0 781
Msa0453070 MtrunA17_Chr2g0331901 50.441 793 343 8 1 750 1 786 0.0 770
Msa0453070 MtrunA17_Chr4g0004331 49.367 790 344 11 1 744 1 780 0.0 739
Msa0453070 MtrunA17_Chr3g0120101 27.399 792 487 22 2 720 25 801 1.65e-83 284
Msa0453070 MtrunA17_Chr4g0031301 28.036 667 414 13 4 665 10 615 3.45e-74 254
Msa0453070 MtrunA17_Chr7g0223291 27.753 663 415 12 4 662 10 612 5.56e-74 253
Msa0453070 MtrunA17_Chr7g0262821 33.176 425 275 4 4 425 10 428 1.69e-73 252
Msa0453070 MtrunA17_Chr7g0223181 27.602 663 416 12 4 662 10 612 4.18e-73 251
Msa0453070 MtrunA17_Chr4g0031321 27.586 667 417 13 4 665 10 615 1.17e-72 249
Msa0453070 MtrunA17_Chr4g0073741 27.300 663 418 13 4 662 9 611 3.75e-72 248
Msa0453070 MtrunA17_Chr8g0388761 27.103 642 397 14 2 636 37 614 7.74e-70 242
Msa0453070 MtrunA17_Chr7g0248131 34.742 426 268 5 4 424 10 430 8.26e-70 241
Msa0453070 MtrunA17_Chr6g0462771 31.860 430 279 5 4 425 10 433 2.05e-69 241
Msa0453070 MtrunA17_Chr8g0388671 27.103 642 397 14 2 636 37 614 2.06e-69 241
Msa0453070 MtrunA17_Chr6g0462601 32.084 427 281 4 4 427 10 430 9.18e-69 238
Msa0453070 MtrunA17_Chr2g0279901 34.236 406 249 5 3 403 56 448 3.46e-68 238
Msa0453070 MtrunA17_Chr7g0223701 32.477 428 279 5 4 427 10 431 5.51e-68 237
Msa0453070 MtrunA17_Chr8g0350731 33.333 426 272 7 4 424 38 456 1.05e-67 236
Msa0453070 MtrunA17_Chr7g0223711 32.235 425 278 5 4 424 10 428 1.65e-67 235
Msa0453070 MtrunA17_Chr2g0298851 32.000 425 280 5 4 424 10 429 4.53e-67 233
Msa0453070 MtrunA17_Chr7g0223031 32.235 425 278 5 4 424 10 428 1.11e-66 233
Msa0453070 MtrunA17_Chr6g0462711 30.754 504 317 10 4 489 11 500 1.32e-66 234
Msa0453070 MtrunA17_Chr6g0462641 31.395 430 281 4 4 425 10 433 2.24e-66 233
Msa0453070 MtrunA17_Chr2g0296391 32.338 402 265 5 4 400 10 409 2.42e-66 229
Msa0453070 MtrunA17_Chr6g0462681 30.824 425 285 4 4 425 10 428 5.84e-66 232
Msa0453070 MtrunA17_Chr7g0223751 32.000 425 279 5 4 424 10 428 7.37e-66 230
Msa0453070 MtrunA17_Chr5g0427901 31.767 447 268 10 4 427 10 442 1.15e-65 230
Msa0453070 MtrunA17_Chr4g0049501 33.005 406 255 5 3 403 53 446 1.42e-65 231
Msa0453070 MtrunA17_Chr2g0284681 30.858 431 283 5 4 425 9 433 3.39e-65 228
Msa0453070 MtrunA17_Chr7g0225671 29.472 492 333 8 4 489 17 500 4.02e-65 228
Msa0453070 MtrunA17_Chr7g0223731 32.000 425 279 5 4 424 10 428 5.26e-65 228
Msa0453070 MtrunA17_Chr7g0233311 31.935 429 280 6 4 427 10 431 2.10e-64 226
Msa0453070 MtrunA17_Chr2g0293581 32.084 427 276 7 4 424 11 429 4.11e-64 225
Msa0453070 MtrunA17_Chr7g0223781 32.710 428 270 6 4 424 10 426 4.47e-64 225
Msa0453070 MtrunA17_Chr2g0298861 30.172 464 299 8 3 447 9 466 1.25e-63 224
Msa0453070 MtrunA17_Chr7g0221661 32.394 426 276 8 4 424 10 428 1.30e-63 224
Msa0453070 MtrunA17_Chr7g0223851 30.364 494 331 8 4 491 19 505 7.16e-63 222
Msa0453070 MtrunA17_Chr7g0223741 30.616 503 321 11 4 493 10 497 8.24e-63 221
Msa0453070 MtrunA17_Chr2g0287631 31.377 443 292 7 4 441 10 445 1.08e-62 221
Msa0453070 MtrunA17_Chr7g0223721 30.465 430 283 7 2 424 8 428 1.14e-62 221
Msa0453070 MtrunA17_Chr4g0040931 30.751 426 283 7 4 424 10 428 1.34e-62 221
Msa0453070 MtrunA17_Chr7g0248151 32.084 427 278 6 4 425 10 429 1.62e-62 221
Msa0453070 MtrunA17_Chr7g0223621 30.374 428 286 6 2 424 8 428 2.73e-61 218
Msa0453070 MtrunA17_Chr7g0223821 30.841 428 283 7 4 424 10 431 7.33e-61 218
Msa0453070 MtrunA17_Chr2g0299921 32.982 379 250 2 4 381 1030 1405 1.67e-60 223
Msa0453070 MtrunA17_Chr2g0299921 31.445 353 238 2 4 355 1414 1763 1.74e-51 195
Msa0453070 MtrunA17_Chr5g0444011 56.684 187 72 1 566 743 1 187 2.71e-60 202
Msa0453070 MtrunA17_Chr7g0223801 31.628 430 273 9 4 424 10 427 3.54e-60 214
Msa0453070 MtrunA17_Chr2g0293601 30.923 401 272 4 4 400 10 409 3.79e-60 211
Msa0453070 MtrunA17_Chr7g0223631 30.700 443 281 7 4 440 10 432 1.73e-59 212
Msa0453070 MtrunA17_Chr7g0233301 31.579 399 268 4 4 398 10 407 5.24e-59 211
Msa0453070 MtrunA17_Chr2g0299851 32.454 379 252 2 4 381 1039 1414 2.07e-58 216
Msa0453070 MtrunA17_Chr7g0217971 30.824 425 260 7 4 424 10 404 3.38e-58 208
Msa0453070 MtrunA17_Chr2g0299791 32.190 379 253 2 4 381 1043 1418 9.28e-57 211
Msa0453070 MtrunA17_Chr2g0293561 30.159 378 254 3 4 372 10 386 3.11e-56 197
Msa0453070 MtrunA17_Chr2g0331381 30.913 427 259 7 2 424 5 399 1.05e-55 199
Msa0453070 MtrunA17_Chr6g0462611 32.344 337 226 2 68 403 24 359 2.62e-53 195
Msa0453070 MtrunA17_Chr2g0299821 28.673 422 291 4 4 416 10 430 3.07e-53 192
Msa0453070 MtrunA17_Chr4g0012541 29.647 425 281 6 4 424 10 420 1.45e-52 193
Msa0453070 MtrunA17_Chr2g0299881 31.566 396 259 4 3 391 1038 1428 6.46e-52 196
Msa0453070 MtrunA17_Chr7g0223831 28.706 425 266 6 4 424 10 401 7.41e-52 191
Msa0453070 MtrunA17_Chr7g0215261 28.302 424 261 7 4 424 10 393 1.46e-51 190
Msa0453070 MtrunA17_Chr2g0277021 31.527 406 262 6 3 403 71 465 2.62e-51 191
Msa0453070 MtrunA17_Chr7g0223541 32.044 362 238 5 65 424 30 385 4.14e-50 185
Msa0453070 MtrunA17_Chr7g0228281 31.803 305 205 2 4 306 71 374 2.13e-47 179
Msa0453070 MtrunA17_Chr7g0223681 33.141 347 218 6 83 424 2 339 5.46e-47 176
Msa0453070 MtrunA17_Chr1g0151991 31.273 275 186 2 4 276 10 283 2.70e-45 164
Msa0453070 MtrunA17_Chr6g0462861 26.552 467 313 12 4 457 10 459 2.45e-41 161
Msa0453070 MtrunA17_Chr7g0245521 31.439 264 178 3 4 265 10 272 2.72e-41 152
Msa0453070 MtrunA17_Chr8g0390821 26.813 455 262 11 4 403 12 450 1.23e-39 155
Msa0453070 MtrunA17_Chr2g0293271 26.829 369 215 7 15 381 45 360 1.45e-35 139
Msa0453070 MtrunA17_Chr1g0166551 30.894 246 166 4 168 410 100 344 3.32e-30 125
Msa0453070 MtrunA17_Chr6g0462791 36.527 167 104 2 112 278 13 177 2.17e-28 112
Msa0453070 MtrunA17_Chr6g0462631 28.041 296 165 6 112 403 42 293 1.35e-27 113
Msa0453070 MtrunA17_Chr1g0188601 32.642 193 127 2 84 275 1 191 4.78e-27 108
Msa0453070 MtrunA17_Chr5g0394391 26.667 420 279 13 4 404 30 439 3.97e-25 110
Msa0453070 MtrunA17_Chr7g0223671 29.032 186 129 2 68 252 10 193 3.11e-21 92.4
Msa0453070 MtrunA17_Chr7g0223861 35.593 118 76 0 70 187 4 121 1.22e-20 88.6
Msa0453070 MtrunA17_Chr4g0046881 34.783 138 82 3 133 268 20 151 5.91e-19 84.3
Msa0453070 MtrunA17_Chr4g0064621 24.115 452 304 14 4 429 141 579 5.84e-18 88.6
Msa0453070 MtrunA17_Chr7g0223761 31.980 197 112 7 238 424 7 191 8.02e-18 85.9
Msa0453070 MtrunA17_Chr4g0060241 25.688 327 215 9 113 425 125 437 5.40e-17 85.1
Msa0453070 MtrunA17_Chr7g0223771 29.730 148 103 1 88 235 4 150 6.36e-17 79.0
Msa0453070 MtrunA17_Chr6g0462701 28.947 152 83 2 112 263 42 168 2.04e-12 66.2
Msa0453070 MtrunA17_Chr6g0481391 25.620 121 87 1 30 150 13 130 2.27e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0453070 AT1G11660.4 59.524 756 291 3 1 755 1 742 0.0 906
Msa0453070 AT1G11660.3 59.524 756 291 3 1 755 1 742 0.0 906
Msa0453070 AT1G11660.1 59.524 756 291 3 1 755 1 742 0.0 906
Msa0453070 AT1G11660.2 57.997 719 287 3 38 755 1 705 0.0 837
Msa0453070 AT1G79930.1 49.937 795 353 8 1 755 1 790 0.0 776
Msa0453070 AT1G79930.2 50.447 783 343 8 1 743 1 778 0.0 774
Msa0453070 AT1G79920.1 52.154 650 273 7 1 617 1 645 0.0 667
Msa0453070 AT1G79920.3 52.006 648 277 6 1 617 1 645 0.0 662
Msa0453070 AT1G79920.2 52.006 648 277 6 1 617 1 645 0.0 662
Msa0453070 AT1G79920.4 52.006 648 277 6 1 617 1 645 0.0 662
Msa0453070 AT4G16660.1 28.571 819 508 24 2 755 25 831 1.10e-87 296
Msa0453070 AT4G16660.2 28.571 819 508 24 2 755 49 855 1.98e-87 295
Msa0453070 AT5G28540.1 27.994 668 409 15 2 662 36 638 1.22e-76 261
Msa0453070 AT5G42020.1 27.695 668 411 15 2 662 36 638 2.36e-76 260
Msa0453070 AT5G42020.3 27.695 668 411 15 2 662 41 643 3.42e-76 260
Msa0453070 AT1G16030.1 27.300 663 418 12 4 662 9 611 2.21e-74 254
Msa0453070 AT1G09080.2 28.700 669 402 14 2 662 41 642 3.34e-73 252
Msa0453070 AT3G12580.1 27.354 669 416 14 4 665 10 615 3.43e-73 251
Msa0453070 AT1G09080.1 28.700 669 402 14 2 662 51 652 6.98e-73 251
Msa0453070 AT5G02500.1 27.218 665 416 13 4 662 10 612 7.44e-73 251
Msa0453070 AT3G09440.1 27.844 668 408 14 4 662 10 612 1.68e-72 249
Msa0453070 AT3G09440.4 27.844 668 408 14 4 662 10 612 1.68e-72 249
Msa0453070 AT3G09440.2 27.844 668 408 14 4 662 10 612 1.68e-72 249
Msa0453070 AT3G09440.3 27.844 668 408 14 4 662 10 612 1.68e-72 249
Msa0453070 AT5G42020.2 32.346 439 277 7 2 436 36 458 1.17e-70 244
Msa0453070 AT5G02500.2 33.773 379 249 2 4 381 10 387 3.63e-70 240
Msa0453070 AT1G56410.1 32.506 403 268 3 4 403 10 411 1.06e-69 241
Msa0453070 AT5G02490.1 27.313 670 409 16 4 662 10 612 1.49e-67 236
Msa0453070 AT5G09590.1 33.498 406 253 6 3 403 59 452 2.14e-66 233
Msa0453070 AT4G37910.1 33.420 383 240 4 3 380 54 426 8.28e-61 218
Msa0453070 AT4G37910.2 33.420 383 240 4 3 380 54 426 8.28e-61 218
Msa0453070 AT5G49910.1 32.266 406 259 6 3 403 80 474 4.20e-52 194
Msa0453070 AT4G24280.1 31.034 406 264 6 3 403 80 474 4.67e-50 188
Msa0453070 AT2G32120.1 26.263 396 251 13 4 381 31 403 8.53e-22 100
Msa0453070 AT2G32120.2 26.263 396 251 13 4 381 31 403 8.53e-22 100

Find 180 sgRNAs with CRISPR-Local

Find 630 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATAGGCAGGAGATTTC+TGG 0.177339 3_3:+42994041 Msa0453070:CDS
AATATTGGGTCGACATTCTT+AGG 0.196299 3_3:-42999659 None:intergenic
CCCATCTCGGATTGTGTTAT+TGG 0.218841 3_3:+42994240 Msa0453070:CDS
GAATCTTGCATCTGGATTAT+TGG 0.227874 3_3:+42994746 Msa0453070:CDS
ATATGACTTGACCATAATAT+TGG 0.250150 3_3:-42999674 None:intergenic
CTTGGAATGGGATGGCCTTT+TGG 0.265566 3_3:-42995547 None:intergenic
TGCATTGCAGCGTTTGAGTT+TGG 0.267137 3_3:+42994459 Msa0453070:CDS
TCTTTGTCATCTTCGTCTTC+TGG 0.285234 3_3:-43001868 None:intergenic
TGGTGGAGAATCACGCTTAT+TGG 0.286757 3_3:-42997398 None:intergenic
CCAAACTACAAGCAAATTAA+TGG 0.290518 3_3:-42993791 None:intergenic
TTTCTTCAAATGAATCAAAT+AGG 0.295577 3_3:+43002163 Msa0453070:three_prime_UTR
TTTCATTTGAAATACTTAGA+TGG 0.296582 3_3:+42994135 Msa0453070:CDS
TTGTAGTTTGGTTTGATATA+AGG 0.301786 3_3:+42993803 Msa0453070:five_prime_UTR
AGCTAGTTGGTTCAGGTTCT+AGG 0.310491 3_3:+42994841 Msa0453070:CDS
CTCTGTCCTGTTGAGCTAAC+TGG 0.311382 3_3:-42998020 None:intergenic
CCATTAATTTGCTTGTAGTT+TGG 0.312647 3_3:+42993791 Msa0453070:five_prime_UTR
TCGCAAGTGAAGAGATTTAT+AGG 0.314040 3_3:+42994027 Msa0453070:CDS
CTATCTGAGGTCTCGGACTT+AGG 0.323825 3_3:-42997340 None:intergenic
AAATCTCTTCACTTGCGATA+TGG 0.325541 3_3:-42994022 None:intergenic
GCATTGCAGCGTTTGAGTTT+GGG 0.325875 3_3:+42994460 Msa0453070:CDS
TCTGTGGAGCTAGTTGGTTC+AGG 0.330516 3_3:+42994834 Msa0453070:CDS
GATTGAAGTCCATATGAAAA+AGG 0.332999 3_3:-42995481 None:intergenic
GCCAACTGATTTGTCCCATT+TGG 0.343188 3_3:+42995591 Msa0453070:CDS
ACTCACTTGCATTCAACTTT+CGG 0.346468 3_3:-42994914 None:intergenic
AAAACTAGAAGATCTGAAAA+AGG 0.347739 3_3:+42999286 Msa0453070:CDS
ACCCCTGCTGTCGTCTGCTT+TGG 0.352853 3_3:+42993937 Msa0453070:CDS
CAAAATTAATTGGTCTGGTT+GGG 0.354272 3_3:+43002252 Msa0453070:three_prime_UTR
ATTCACAAAATTAATTGGTC+TGG 0.377354 3_3:+43002247 Msa0453070:three_prime_UTR
AGCGCCATTGGCAACAGAAT+TGG 0.380177 3_3:-42997365 None:intergenic
AATTGTTCGCTTTGATTCAA+TGG 0.382808 3_3:-42992995 None:intergenic
GAGATTTCTGGATCCTGATA+TGG 0.383130 3_3:+42994053 Msa0453070:CDS
GTGAAGTAGATTGTGTGAAT+TGG 0.384578 3_3:+42993762 Msa0453070:five_prime_UTR
AGCATAGACATTATTTGAAC+TGG 0.388293 3_3:-42994174 None:intergenic
TATGACTTGACCATAATATT+GGG 0.389242 3_3:-42999673 None:intergenic
GCGCAATAGAGGAGCTAAAC+AGG 0.389650 3_3:+42999702 Msa0453070:CDS
GATGGATGAGAAAGATGTTA+AGG 0.391889 3_3:+42994698 Msa0453070:CDS
AGAACTCCAGTTAGCTCAAC+AGG 0.394053 3_3:+42998014 Msa0453070:CDS
ACGCAGCCTAATGCAAGCCT+TGG 0.398015 3_3:-42994607 None:intergenic
GAATTTGAGAATCTTGCATC+TGG 0.403441 3_3:+42994738 Msa0453070:CDS
AGAATGTCGACCCAATATTA+TGG 0.406352 3_3:+42999663 Msa0453070:CDS
TCGCCAAAGCAGACGACAGC+AGG 0.408209 3_3:-42993940 None:intergenic
ACAAAATTAATTGGTCTGGT+TGG 0.417013 3_3:+43002251 Msa0453070:three_prime_UTR
TCAATAAATGCAACATAACT+TGG 0.417342 3_3:-42994411 None:intergenic
TCGATATTTAGCGGTGCCTC+TGG 0.422641 3_3:-42994669 None:intergenic
TCTTTGTACCGAATCTCAAT+TGG 0.423825 3_3:-42999389 None:intergenic
CTTGCGATATGGTTGACTTT+GGG 0.426132 3_3:-42994011 None:intergenic
TTGCTGGGTTGAAGCCTTTG+AGG 0.426321 3_3:+42994319 Msa0453070:CDS
GTTGAATGATGAATCGAAAC+GGG 0.426655 3_3:+42993912 Msa0453070:CDS
TTCGTCTTCTGAAGGTGTCC+TGG 0.427253 3_3:-43001830 None:intergenic
GACTGAGGATTGGCTTTATG+AGG 0.428957 3_3:+42999229 Msa0453070:CDS
CTTGACGCGGCAATAATTGC+TGG 0.430407 3_3:+42994303 Msa0453070:CDS
GATAATAATGTACTCACTGC+TGG 0.437528 3_3:-42994867 None:intergenic
TCAATGTATTCACGGATGAT+TGG 0.438435 3_3:-43001905 None:intergenic
AAATTCTCATTCACTGCAAT+AGG 0.439271 3_3:-42997946 None:intergenic
TTCATTTGAAATACTTAGAT+GGG 0.442131 3_3:+42994136 Msa0453070:CDS
AGAATCCTTGGAGGAACAAA+TGG 0.444352 3_3:-43002089 None:intergenic
TTGCGTAGAAAGCTTCCAAA+TGG 0.446853 3_3:-42995606 None:intergenic
TGCAAGTCGGTGAAGTATGA+TGG 0.449561 3_3:-42994267 None:intergenic
AGCCTCATGAGCAAGAGGGG+GGG 0.449981 3_3:-43002039 None:intergenic
ACTGCAACTGCTCTTAGTTA+TGG 0.451796 3_3:+42994357 Msa0453070:CDS
GCAGTGAATGAGAATTTCTA+TGG 0.456214 3_3:+42997952 Msa0453070:CDS
GATGGGAAGACCACAGTACT+TGG 0.456596 3_3:-42995565 None:intergenic
ATTTCTTCTGTGGAGCTAGT+TGG 0.456860 3_3:+42994828 Msa0453070:CDS
CGTTTGAGTTTGGGCAAATG+AGG 0.457526 3_3:+42994469 Msa0453070:CDS
TCATATTAAGAGCGCAATAG+AGG 0.458464 3_3:+42999691 Msa0453070:CDS
GACAAATCAGTTGGCTTGGA+TGG 0.460531 3_3:-42995583 None:intergenic
ACTTGCGATATGGTTGACTT+TGG 0.461121 3_3:-42994012 None:intergenic
GTATTCTCGCACACGGTATG+TGG 0.463406 3_3:-42994979 None:intergenic
TGAGTTGAAATGAGCGTGGT+AGG 0.472061 3_3:+42993826 Msa0453070:exon
TCAATTAATGCTTCGTTGCA+AGG 0.472169 3_3:-42994783 None:intergenic
AACAGCTCTTCAACACATAT+CGG 0.473623 3_3:+42999156 Msa0453070:intron
TTGTCATCTTCGTCTTCTGA+AGG 0.473797 3_3:-43001838 None:intergenic
AAGAGAGGGATGTCATATCT+AGG 0.475264 3_3:+42999195 Msa0453070:CDS
GCGCCTCATCAATGTATTCA+CGG 0.476825 3_3:-43001913 None:intergenic
AACGAAGCATTAATTGAAGC+AGG 0.477356 3_3:+42994789 Msa0453070:CDS
GCATGGATCTCAAGGTAGTA+AGG 0.480080 3_3:+42997117 Msa0453070:CDS
GGTACTATCTTCAGCGCCAT+TGG 0.480640 3_3:-42997377 None:intergenic
ATGGATGAGAAAGATGTTAA+GGG 0.484542 3_3:+42994699 Msa0453070:CDS
ATGGGACAAATCAGTTGGCT+TGG 0.486215 3_3:-42995587 None:intergenic
TTTGGGAAAAGTACACCATC+TGG 0.486296 3_3:-42995529 None:intergenic
GTAGATTGTGTGAATTGGAT+TGG 0.496511 3_3:+42993767 Msa0453070:five_prime_UTR
GCTAAATATCGAGTGTCTGA+TGG 0.498645 3_3:+42994680 Msa0453070:CDS
TTTCAGATCGGTCCTATGCA+TGG 0.498893 3_3:+42997100 Msa0453070:intron
ATTGGTACTATCTGAGGTCT+CGG 0.498902 3_3:-42997347 None:intergenic
TGAAACAAAACGCCACCATC+CGG 0.499778 3_3:-42994117 None:intergenic
CTATACTTGTCAGAAGGTAT+CGG 0.500444 3_3:-43001966 None:intergenic
TATGTTGCATTTATTGACAT+TGG 0.501872 3_3:+42994417 Msa0453070:CDS
TGTTGAATGATGAATCGAAA+CGG 0.503473 3_3:+42993911 Msa0453070:CDS
CTAATGCCAAGGCTTGCATT+AGG 0.505620 3_3:+42994601 Msa0453070:CDS
TAGATATGACATCCCTCTCT+TGG 0.505654 3_3:-42999193 None:intergenic
CTTGCATTCAACTTTCGGCT+CGG 0.505967 3_3:-42994909 None:intergenic
TCTGGATCCTGATATGGAAA+AGG 0.508996 3_3:+42994059 Msa0453070:CDS
AAGTGAAGAGATTTATAGGC+AGG 0.509278 3_3:+42994031 Msa0453070:CDS
TCTTGAAACTTCTCAAGGGC+CGG 0.516494 3_3:+42994098 Msa0453070:CDS
TGGTGGATCCAATTGAGATT+CGG 0.522302 3_3:+42999381 Msa0453070:CDS
AGATTTGGAGGCACCCATCT+CGG 0.528289 3_3:+42994227 Msa0453070:CDS
GCTGTGGCTTCAGTTGATCA+AGG 0.528497 3_3:+42997270 Msa0453070:intron
TGCGTAGAAAGCTTCCAAAT+GGG 0.529319 3_3:-42995605 None:intergenic
CGAAGATGACAAAGACAAGT+TGG 0.531629 3_3:+43001876 Msa0453070:CDS
ACCAATAACACAATCCGAGA+TGG 0.536467 3_3:-42994241 None:intergenic
CTCCCTCTTGAAACTTCTCA+AGG 0.537397 3_3:+42994093 Msa0453070:CDS
TTGCTGTGGCAAAGCATCGC+GGG 0.538277 3_3:+42993878 Msa0453070:CDS
GAGTTGAAATGAGCGTGGTA+GGG 0.538506 3_3:+42993827 Msa0453070:exon
ATGACAGTACTTACATAACT+TGG 0.540514 3_3:-42997418 None:intergenic
TGCACAACATAGTGAAATCC+AGG 0.540959 3_3:+43001812 Msa0453070:CDS
TGTCTATGAGACGAGAAGTA+AGG 0.544538 3_3:+42998086 Msa0453070:CDS
TCCAAATGGGACAAATCAGT+TGG 0.545647 3_3:-42995592 None:intergenic
GACAACCATTTGTTCCTCCA+AGG 0.546064 3_3:+43002084 Msa0453070:three_prime_UTR
ACTTCACCGACTTGCAGAGA+TGG 0.547166 3_3:+42994274 Msa0453070:CDS
TTGACGCGGCAATAATTGCT+GGG 0.549851 3_3:+42994304 Msa0453070:CDS
ACAAATCAGTTGGCTTGGAT+GGG 0.550025 3_3:-42995582 None:intergenic
CAGTCGTGTATCAGCCTCAA+AGG 0.550345 3_3:-42994333 None:intergenic
AAAATCTCTAGAATCCTTGG+AGG 0.551580 3_3:-43002098 None:intergenic
CTTCACCGACTTGCAGAGAT+GGG 0.553773 3_3:+42994275 Msa0453070:CDS
AAGACCACAGTACTTGGAAT+GGG 0.553954 3_3:-42995559 None:intergenic
TATTCTCGCACACGGTATGT+GGG 0.555935 3_3:-42994978 None:intergenic
CGAATTTCTGATAGACCAGA+TGG 0.560566 3_3:+42995514 Msa0453070:CDS
TCAAATAGGTTATGCCTAAG+TGG 0.560702 3_3:+43002177 Msa0453070:three_prime_UTR
GTTTGCAAGAGACTGAGGAT+TGG 0.563246 3_3:+42999219 Msa0453070:CDS
TGCAGAGAAGATTTCTTCTG+TGG 0.563467 3_3:+42994818 Msa0453070:CDS
GAAGACCACAGTACTTGGAA+TGG 0.568981 3_3:-42995560 None:intergenic
AATTAGCCTCATGAGCAAGA+GGG 0.569251 3_3:-43002043 None:intergenic
CCAATAACACAATCCGAGAT+GGG 0.574942 3_3:-42994240 None:intergenic
GCAAGTCGGTGAAGTATGAT+GGG 0.575797 3_3:-42994266 None:intergenic
GAAAAGATAAGGCGAACAGA+AGG 0.576632 3_3:+42997920 Msa0453070:CDS
CGCCAAAGCAGACGACAGCA+GGG 0.576685 3_3:-42993939 None:intergenic
AGATTGTCTAAGAAAAGATA+AGG 0.579423 3_3:+42997909 Msa0453070:CDS
ATGTTAAGGGCTTTATAACA+AGG 0.580637 3_3:+42994712 Msa0453070:CDS
TTAGCAATGAAGCAGAGCAT+TGG 0.581229 3_3:+42999603 Msa0453070:CDS
AGAGCATTGGCTAACAGAGA+AGG 0.581697 3_3:+42999616 Msa0453070:CDS
TGATTTATGTACGTAGTATG+TGG 0.584531 3_3:+43002210 Msa0453070:three_prime_UTR
GGTCCTATGCATGGATCTCA+AGG 0.585543 3_3:+42997109 Msa0453070:CDS
TCTGCTTTGGCGAGAAGCAG+CGG 0.586019 3_3:+42993950 Msa0453070:CDS
ATCAGACACTCGATATTTAG+CGG 0.586237 3_3:-42994678 None:intergenic
ACTTCTCGTCTCATAGACAT+AGG 0.590574 3_3:-42998082 None:intergenic
TGATGTGTATTCTAATGCCA+AGG 0.591618 3_3:+42994590 Msa0453070:CDS
AAATTAGCCTCATGAGCAAG+AGG 0.592290 3_3:-43002044 None:intergenic
AACAGAATTGGTACTATCTG+AGG 0.592528 3_3:-42997353 None:intergenic
ACAGTACTTACATAACTTGG+TGG 0.592894 3_3:-42997415 None:intergenic
GAAACTTCTCAAGGGCCGGA+TGG 0.593136 3_3:+42994102 Msa0453070:CDS
ACTTCTCAAGGGCCGGATGG+TGG 0.593340 3_3:+42994105 Msa0453070:CDS
AGCTCAACAGGACAGAGCTG+TGG 0.600190 3_3:+42998026 Msa0453070:CDS
CTCATAGACATAGGACTCCA+AGG 0.602157 3_3:-42998073 None:intergenic
GCTTTGCTAGTGACCAAGAG+AGG 0.604732 3_3:+42999180 Msa0453070:CDS
AATGAACATGAACTACCACC+TGG 0.605194 3_3:+42995628 Msa0453070:CDS
TAGCCTCATGAGCAAGAGGG+GGG 0.607979 3_3:-43002040 None:intergenic
ATACCGTGTGCGAGAATACG+AGG 0.608025 3_3:+42994983 Msa0453070:CDS
CAAAGAAAAGAAGAACACCT+TGG 0.609634 3_3:+42998056 Msa0453070:CDS
AGTACCAATTCTGTTGCCAA+TGG 0.610914 3_3:+42997361 Msa0453070:CDS
AATTGAATATACCTTGTGAA+TGG 0.611723 3_3:-42993048 None:intergenic
TTTCTATGGTGGAATGACAA+TGG 0.611799 3_3:+42997966 Msa0453070:CDS
ATTAGCCTCATGAGCAAGAG+GGG 0.615103 3_3:-43002042 None:intergenic
TAGGAGTTTGCAAGAGACTG+AGG 0.618731 3_3:+42999214 Msa0453070:CDS
TGTTAAGGGCTTTATAACAA+GGG 0.620789 3_3:+42994713 Msa0453070:CDS
GAGGATTGGCTTTATGAGGA+CGG 0.621172 3_3:+42999233 Msa0453070:CDS
GGCCCTTGAGAAGTTTCAAG+AGG 0.625597 3_3:-42994096 None:intergenic
TCCCTCTTGAAACTTCTCAA+GGG 0.627702 3_3:+42994094 Msa0453070:CDS
CCACAGTACTTGGAATGGGA+TGG 0.630102 3_3:-42995555 None:intergenic
CTACCTTGAGATCCATGCAT+AGG 0.630694 3_3:-42997112 None:intergenic
AGCGTGGTAGGGTTTGACAT+TGG 0.635643 3_3:+42993838 Msa0453070:CDS
CTTTGCTAGTGACCAAGAGA+GGG 0.635803 3_3:+42999181 Msa0453070:CDS
GCCCTTGAGAAGTTTCAAGA+GGG 0.636685 3_3:-42994095 None:intergenic
CGAGTTCAACTAAATCTGCA+TGG 0.636814 3_3:+42997154 Msa0453070:CDS
TTAGCCTCATGAGCAAGAGG+GGG 0.639684 3_3:-43002041 None:intergenic
CATTGGTCAATGTGACACTC+AGG 0.643408 3_3:+42994434 Msa0453070:CDS
CATCCGTGAATACATTGATG+AGG 0.657760 3_3:+43001910 Msa0453070:exon
CTAAACTGAGCATACCGTGA+AGG 0.666297 3_3:-42995671 None:intergenic
TGAGAACTGTGTTATTGCTG+TGG 0.670838 3_3:+42993864 Msa0453070:CDS
AAGGTGAGTTGAAATGAGCG+TGG 0.670974 3_3:+42993822 Msa0453070:exon
GTGAATGAGAATTTCTATGG+TGG 0.675812 3_3:+42997955 Msa0453070:CDS
TCAGTTGATCAAGGATCACA+CGG 0.676692 3_3:+42997279 Msa0453070:intron
ATATGCCCATCTCTGCAAGT+CGG 0.677521 3_3:-42994280 None:intergenic
GCCAAAGCAGACGACAGCAG+GGG 0.693366 3_3:-42993938 None:intergenic
CCATCCCATTCCAAGTACTG+TGG 0.701012 3_3:+42995555 Msa0453070:CDS
ATTGCTGTGGCAAAGCATCG+CGG 0.704864 3_3:+42993877 Msa0453070:CDS
AAACCTCGTATTCTCGCACA+CGG 0.711002 3_3:-42994986 None:intergenic
GCAAGTGAGTGTGTAGCTCG+TGG 0.714591 3_3:+42994927 Msa0453070:CDS
ATGGAAGAAAGCAAAGACTG+TGG 0.721338 3_3:-42992976 None:intergenic
GAGATGGGCATATCTTGACG+CGG 0.752043 3_3:+42994290 Msa0453070:CDS
CTTGTGAATGGTGAAAATTG+CGG 0.795123 3_3:-42993036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr3_3:42996671-42996690 None:intergenic 0.0%
!!! TTATTATTTTTTTGAATTTC+AGG + chr3_3:42996079-42996098 Msa0453070:intron 10.0%
!!! GATTATCTTATATTTTTTAT+TGG + chr3_3:42998565-42998584 Msa0453070:intron 10.0%
!! ACAAATATAAACTAATATTA+AGG - chr3_3:42999752-42999771 None:intergenic 10.0%
!! TAAAAATTCACAAAATTAAT+TGG + chr3_3:43002242-43002261 Msa0453070:three_prime_UTR 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002018-43002037 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002018-43002037 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002018-43002037 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002018-43002037 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002018-43002037 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002018-43002037 None:intergenic 100.0%
!!! AAAAATTGAATTTTTCGAAA+TGG + chr3_3:42993204-42993223 Msa0453070:intron 15.0%
!!! AAAATTGAATTTTTCGAAAT+GGG + chr3_3:42993205-42993224 Msa0453070:intron 15.0%
!! ACTACAAAAGAAAATTAAAA+AGG - chr3_3:42993676-42993695 None:intergenic 15.0%
!! ACACTAATATAAGAAAATAA+AGG - chr3_3:42995891-42995910 None:intergenic 15.0%
!! AAAACTTATATAGATATAGA+CGG + chr3_3:42996144-42996163 Msa0453070:intron 15.0%
!!! TTCTAAGAAATATTAAAAAC+AGG + chr3_3:42996571-42996590 Msa0453070:intron 15.0%
!!! AAAAAAAAAAGGAAAAGTAT+TGG - chr3_3:42996661-42996680 None:intergenic 15.0%
!! TCATAATTTATACCAAAAAA+TGG - chr3_3:42997227-42997246 None:intergenic 15.0%
!! TAAAAAGTAAAATAGTTGTT+CGG - chr3_3:42998340-42998359 None:intergenic 15.0%
!! TCTAATTTATTATATCATCA+TGG - chr3_3:43000266-43000285 None:intergenic 15.0%
!! TATCATGTAATTTCTTAAAA+TGG + chr3_3:43000943-43000962 Msa0453070:intron 15.0%
!! ATCATGTAATTTCTTAAAAT+GGG + chr3_3:43000944-43000963 Msa0453070:intron 15.0%
!!! TAATTTTGATATAAAAGCAA+GGG - chr3_3:43001761-43001780 None:intergenic 15.0%
!!! TTAATTTTGATATAAAAGCA+AGG - chr3_3:43001762-43001781 None:intergenic 15.0%
!!! CTTGTTTTATTTACAGTTTA+AGG + chr3_3:42993283-42993302 Msa0453070:intron 20.0%
!! TATTTACAGTTTAAGGATTT+AGG + chr3_3:42993290-42993309 Msa0453070:intron 20.0%
!! AATAAATTGTTAATCCAAAC+AGG - chr3_3:42993317-42993336 None:intergenic 20.0%
!!! TTTCATTTGAAATACTTAGA+TGG + chr3_3:42994135-42994154 Msa0453070:CDS 20.0%
!!! TTCATTTGAAATACTTAGAT+GGG + chr3_3:42994136-42994155 Msa0453070:CDS 20.0%
!! ATACTGAAAATAAACCTTTA+AGG - chr3_3:42995310-42995329 None:intergenic 20.0%
!!! AGAAATTGCATTGATTTAAA+CGG - chr3_3:42995433-42995452 None:intergenic 20.0%
!! TTATAAATAACAGCTCAAAA+GGG - chr3_3:42995975-42995994 None:intergenic 20.0%
!! ATTATAAATAACAGCTCAAA+AGG - chr3_3:42995976-42995995 None:intergenic 20.0%
!!! TGTTTTATGAATTGTTGTTA+AGG - chr3_3:42996124-42996143 None:intergenic 20.0%
!! CATCACAGTTATATATTATA+AGG - chr3_3:42996422-42996441 None:intergenic 20.0%
!! AGAATATATTATGACATAAG+TGG - chr3_3:42996494-42996513 None:intergenic 20.0%
!!! TTTCTTAGAAACTTTGTTTT+AGG - chr3_3:42996561-42996580 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGTATCC+AGG + chr3_3:42996688-42996707 Msa0453070:intron 20.0%
!! ATGCTTACAAATATAATGTA+TGG - chr3_3:42996733-42996752 None:intergenic 20.0%
!! AACATAAATCAGACAATATT+TGG - chr3_3:42996758-42996777 None:intergenic 20.0%
!!! TTGTCTGATTTATGTTTTAT+TGG + chr3_3:42996762-42996781 Msa0453070:intron 20.0%
!!! AGTTAGAAATTTAACTTGAA+TGG + chr3_3:42996790-42996809 Msa0453070:intron 20.0%
!!! GGTTTTATTTTTCCATTTTT+TGG + chr3_3:42997212-42997231 Msa0453070:intron 20.0%
!!! CTTTCTTTTTCTTTTTCTTT+TGG + chr3_3:42997473-42997492 Msa0453070:intron 20.0%
!! TATAACTTTATCAAGTAAAG+TGG + chr3_3:42998885-42998904 Msa0453070:intron 20.0%
!! GGATTAAAATAAAAACTTCA+TGG + chr3_3:42998919-42998938 Msa0453070:intron 20.0%
!! CATGAAATAAGATAAAAGTT+TGG - chr3_3:42999078-42999097 None:intergenic 20.0%
!!! TCTTAAGATAAGCTTTTAAT+TGG + chr3_3:42999551-42999570 Msa0453070:intron 20.0%
!!! CTTAAGATAAGCTTTTAATT+GGG + chr3_3:42999552-42999571 Msa0453070:intron 20.0%
!! TAATATTAAGGAAAACAGAA+AGG - chr3_3:42999740-42999759 None:intergenic 20.0%
!!! AGTTTATATTTGTCATTTTC+TGG + chr3_3:42999759-42999778 Msa0453070:intron 20.0%
!! ATATATTCTATCATTAGAAC+AGG + chr3_3:42999804-42999823 Msa0453070:intron 20.0%
!! TTCATATTAAAGGAAATTGA+AGG - chr3_3:43000173-43000192 None:intergenic 20.0%
!! TCATGTAATTTCTTAAAATG+GGG + chr3_3:43000945-43000964 Msa0453070:intron 20.0%
!! ATCAATCTAATTAACAAATG+TGG - chr3_3:43001251-43001270 None:intergenic 20.0%
!! ATATAAATCCCTAAAATTTG+AGG + chr3_3:43001441-43001460 Msa0453070:intron 20.0%
!!! TTCTAAATCCTCAAATTTTA+GGG - chr3_3:43001452-43001471 None:intergenic 20.0%
!!! ATTCTAAATCCTCAAATTTT+AGG - chr3_3:43001453-43001472 None:intergenic 20.0%
!! AATTAATTTATGTCTGTTGA+CGG + chr3_3:43001776-43001795 Msa0453070:intron 20.0%
!! TTTCTTCAAATGAATCAAAT+AGG + chr3_3:43002163-43002182 Msa0453070:three_prime_UTR 20.0%
! AATTGAATATACCTTGTGAA+TGG - chr3_3:42993051-42993070 None:intergenic 25.0%
!!! ATTTTGGCGAAAAATTAAGT+GGG - chr3_3:42993156-42993175 None:intergenic 25.0%
!!! AATTTTGGCGAAAAATTAAG+TGG - chr3_3:42993157-42993176 None:intergenic 25.0%
!!! GATCCAATTTTTGGAAATTT+TGG - chr3_3:42993172-42993191 None:intergenic 25.0%
!!! TGGAATTTTGATCCAATTTT+TGG - chr3_3:42993181-42993200 None:intergenic 25.0%
! AAAATTGGATCAAAATTCCA+AGG + chr3_3:42993181-42993200 Msa0453070:intron 25.0%
!! CGAAAAATTCAATTTTTCCT+TGG - chr3_3:42993201-42993220 None:intergenic 25.0%
!!! GTTGTTTTTAGAAGCTATAT+TGG + chr3_3:42993423-42993442 Msa0453070:intron 25.0%
!! TTTTCTTTTGTAGTGATTTG+TGG + chr3_3:42993682-42993701 Msa0453070:intron 25.0%
!! AGTAATTAGGTGAAGTTTTT+GGG + chr3_3:42993733-42993752 Msa0453070:intron 25.0%
!!! TTGTAGTTTGGTTTGATATA+AGG + chr3_3:42993803-42993822 Msa0453070:five_prime_UTR 25.0%
!! AAAACAAATTTTCAGAGTGA+TGG + chr3_3:42994387-42994406 Msa0453070:CDS 25.0%
! TCAATAAATGCAACATAACT+TGG - chr3_3:42994414-42994433 None:intergenic 25.0%
! TATGTTGCATTTATTGACAT+TGG + chr3_3:42994417-42994436 Msa0453070:CDS 25.0%
!! TCATTTTGCTGAAAAATTCA+AGG + chr3_3:42994554-42994573 Msa0453070:CDS 25.0%
!!! ACTTTTTTGCTGATGTAAAA+TGG + chr3_3:42995353-42995372 Msa0453070:intron 25.0%
! GGGTACAATATTACAAATAA+AGG - chr3_3:42995412-42995431 None:intergenic 25.0%
!!! GAAATTGCATTGATTTAAAC+GGG - chr3_3:42995432-42995451 None:intergenic 25.0%
!!! GATATTAGTCCTTTTTCATA+TGG + chr3_3:42995472-42995491 Msa0453070:CDS 25.0%
!!! GTGTTTTTGTTTTTAGTACT+AGG + chr3_3:42995808-42995827 Msa0453070:intron 25.0%
!! TTAAAAACAGGTTACTCTTT+TGG + chr3_3:42996583-42996602 Msa0453070:intron 25.0%
!! TAAAAACAGGTTACTCTTTT+GGG + chr3_3:42996584-42996603 Msa0453070:intron 25.0%
!!! AAATTTAACTTGAATGGATC+TGG + chr3_3:42996796-42996815 Msa0453070:intron 25.0%
!!! AATTTAACTTGAATGGATCT+GGG + chr3_3:42996797-42996816 Msa0453070:intron 25.0%
! CTATACCTAATTCAGAAATA+GGG - chr3_3:42996842-42996861 None:intergenic 25.0%
! TCTATACCTAATTCAGAAAT+AGG - chr3_3:42996843-42996862 None:intergenic 25.0%
!! TTGCTAAAAGGAAGTATATA+TGG + chr3_3:42996984-42997003 Msa0453070:intron 25.0%
!!! TCATTCAAATTTTGATGCAA+TGG + chr3_3:42997309-42997328 Msa0453070:CDS 25.0%
! TCTTATCCTATATATTGCAT+AGG + chr3_3:42997694-42997713 Msa0453070:intron 25.0%
! ACAAACCCATAAATGTAATA+TGG + chr3_3:42997721-42997740 Msa0453070:intron 25.0%
! GATTGCCATATTACATTTAT+GGG - chr3_3:42997729-42997748 None:intergenic 25.0%
! TGATTGCCATATTACATTTA+TGG - chr3_3:42997730-42997749 None:intergenic 25.0%
! AGATTGTCTAAGAAAAGATA+AGG + chr3_3:42997909-42997928 Msa0453070:CDS 25.0%
!! CTTTTAATATGAGAATCCAA+AGG - chr3_3:42998828-42998847 None:intergenic 25.0%
! ACTTGATAAAGTTATAGCAT+GGG - chr3_3:42998881-42998900 None:intergenic 25.0%
! TACTTGATAAAGTTATAGCA+TGG - chr3_3:42998882-42998901 None:intergenic 25.0%
! TATGAAATATTATCTGCACA+GGG + chr3_3:42999035-42999054 Msa0453070:intron 25.0%
! AAAACTAGAAGATCTGAAAA+AGG + chr3_3:42999286-42999305 Msa0453070:CDS 25.0%
! AGCATCACAATAATATATAG+TGG - chr3_3:42999529-42999548 None:intergenic 25.0%
! TATGACTTGACCATAATATT+GGG - chr3_3:42999676-42999695 None:intergenic 25.0%
! ATATGACTTGACCATAATAT+TGG - chr3_3:42999677-42999696 None:intergenic 25.0%
!!! TTTGTCATTTTCTGGTTATA+TGG + chr3_3:42999767-42999786 Msa0453070:intron 25.0%
!! TATTGGTTGGTTCATATTAA+AGG - chr3_3:43000183-43000202 None:intergenic 25.0%
! GAATGAATAAGGTTAACATT+AGG - chr3_3:43000217-43000236 None:intergenic 25.0%
! ACCTTATTCATTCTACATAA+AGG + chr3_3:43000224-43000243 Msa0453070:intron 25.0%
! CCTTATTCATTCTACATAAA+GGG + chr3_3:43000225-43000244 Msa0453070:intron 25.0%
! TGTTATTATTGAACCAAACT+AGG + chr3_3:43000349-43000368 Msa0453070:intron 25.0%
! TACTCATCTCTTAATTTAGA+AGG + chr3_3:43000409-43000428 Msa0453070:intron 25.0%
!! TCTCTTAATTTAGAAGGTAT+AGG + chr3_3:43000415-43000434 Msa0453070:intron 25.0%
!! CTCTTAATTTAGAAGGTATA+GGG + chr3_3:43000416-43000435 Msa0453070:intron 25.0%
!! TCTTAATTTAGAAGGTATAG+GGG + chr3_3:43000417-43000436 Msa0453070:intron 25.0%
!! TGTCCATAAAATGCTTTAAA+AGG + chr3_3:43000452-43000471 Msa0453070:intron 25.0%
!!! TCTCCTTTTAAAGCATTTTA+TGG - chr3_3:43000458-43000477 None:intergenic 25.0%
! AAGATATATTAGATGTGGTT+GGG - chr3_3:43000600-43000619 None:intergenic 25.0%
! TAAGATATATTAGATGTGGT+TGG - chr3_3:43000601-43000620 None:intergenic 25.0%
!! AGTCTAAGATATATTAGATG+TGG - chr3_3:43000605-43000624 None:intergenic 25.0%
! CTATGTTATTATTGAATGTG+AGG - chr3_3:43000832-43000851 None:intergenic 25.0%
! CATGTAATTTCTTAAAATGG+GGG + chr3_3:43000946-43000965 Msa0453070:intron 25.0%
!!! TTTATTTTGTATCTTGAACC+AGG - chr3_3:43001107-43001126 None:intergenic 25.0%
!! ATCCAAATAATCAGGTTTTT+CGG + chr3_3:43001530-43001549 Msa0453070:intron 25.0%
! ATGATATGAATAGATCTGAT+AGG + chr3_3:43001645-43001664 Msa0453070:intron 25.0%
! TGATATGAATAGATCTGATA+GGG + chr3_3:43001646-43001665 Msa0453070:intron 25.0%
!!! TTTTTTCTATACTTGTCAGA+AGG - chr3_3:43001975-43001994 None:intergenic 25.0%
!!! TTAAAAATCTCTAGAATCCT+TGG - chr3_3:43002104-43002123 None:intergenic 25.0%
! ATTCACAAAATTAATTGGTC+TGG + chr3_3:43002247-43002266 Msa0453070:three_prime_UTR 25.0%
AATTGTTCGCTTTGATTCAA+TGG - chr3_3:42992998-42993017 None:intergenic 30.0%
TCGCCAAAATTTCCAAAAAT+TGG + chr3_3:42993166-42993185 Msa0453070:intron 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - chr3_3:42993515-42993534 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr3_3:42993516-42993535 None:intergenic 30.0%
TGTGGTGAAAATTAGATTTC+TGG + chr3_3:42993700-42993719 Msa0453070:intron 30.0%
GTGGTGAAAATTAGATTTCT+GGG + chr3_3:42993701-42993720 Msa0453070:intron 30.0%
! GAGTAATTAGGTGAAGTTTT+TGG + chr3_3:42993732-42993751 Msa0453070:intron 30.0%
! GTAATTAGGTGAAGTTTTTG+GGG + chr3_3:42993734-42993753 Msa0453070:intron 30.0%
CCAAACTACAAGCAAATTAA+TGG - chr3_3:42993794-42993813 None:intergenic 30.0%
!! CCATTAATTTGCTTGTAGTT+TGG + chr3_3:42993791-42993810 Msa0453070:five_prime_UTR 30.0%
TGTTGAATGATGAATCGAAA+CGG + chr3_3:42993911-42993930 Msa0453070:CDS 30.0%
AGCATAGACATTATTTGAAC+TGG - chr3_3:42994177-42994196 None:intergenic 30.0%
GACTATGACAGAAAAAGATT+TGG + chr3_3:42994212-42994231 Msa0453070:CDS 30.0%
TATGACAGAAAAAGATTTGG+AGG + chr3_3:42994215-42994234 Msa0453070:CDS 30.0%
ATGGATGAGAAAGATGTTAA+GGG + chr3_3:42994699-42994718 Msa0453070:CDS 30.0%
! ATGTTAAGGGCTTTATAACA+AGG + chr3_3:42994712-42994731 Msa0453070:CDS 30.0%
! TGTTAAGGGCTTTATAACAA+GGG + chr3_3:42994713-42994732 Msa0453070:CDS 30.0%
! AAACCTTTAAGGATAAACCT+AGG - chr3_3:42995299-42995318 None:intergenic 30.0%
ATGAAAAAGGACTAATATCC+TGG - chr3_3:42995471-42995490 None:intergenic 30.0%
GATTGAAGTCCATATGAAAA+AGG - chr3_3:42995484-42995503 None:intergenic 30.0%
TCCAAAAATTAGTTCCTTCA+CGG + chr3_3:42995657-42995676 Msa0453070:CDS 30.0%
! TATGCTCAGTTTAGAACATT+TGG + chr3_3:42995680-42995699 Msa0453070:intron 30.0%
! GAATTGTTGTTAAGGTATCT+AGG - chr3_3:42996116-42996135 None:intergenic 30.0%
CTAAAAAGATAAGTTCTGCT+AGG + chr3_3:42996222-42996241 Msa0453070:intron 30.0%
AGTATCCTTAAACAAAGACT+TGG + chr3_3:42996305-42996324 Msa0453070:intron 30.0%
GAAACATGTTGAGTTACATA+GGG - chr3_3:42996518-42996537 None:intergenic 30.0%
TGAAACATGTTGAGTTACAT+AGG - chr3_3:42996519-42996538 None:intergenic 30.0%
AACATGTTTCAAGAAGTTCT+CGG + chr3_3:42996528-42996547 Msa0453070:intron 30.0%
CATGAAATAACCTATGAGTA+TGG + chr3_3:42996615-42996634 Msa0453070:intron 30.0%
!! ATTTAACTTGAATGGATCTG+GGG + chr3_3:42996798-42996817 Msa0453070:intron 30.0%
ATGACAGTACTTACATAACT+TGG - chr3_3:42997421-42997440 None:intergenic 30.0%
GTCTATCCTATGCAATATAT+AGG - chr3_3:42997703-42997722 None:intergenic 30.0%
AAATTCTCATTCACTGCAAT+AGG - chr3_3:42997949-42997968 None:intergenic 30.0%
!! TAACTGGAGTTCTTTTTCAT+GGG - chr3_3:42998007-42998026 None:intergenic 30.0%
AAGTAAAATAGTTGTTCGGT+TGG - chr3_3:42998336-42998355 None:intergenic 30.0%
! TACTACACTGTTTTATCCTT+TGG + chr3_3:42998408-42998427 Msa0453070:intron 30.0%
!! TTTTTGTTGTGTGAATCCAA+AGG - chr3_3:42998427-42998446 None:intergenic 30.0%
TGGTATATGCTAGAACATTA+TGG - chr3_3:42998504-42998523 None:intergenic 30.0%
AATCCAAAGGATATCATTAG+GGG - chr3_3:42998815-42998834 None:intergenic 30.0%
GAATCCAAAGGATATCATTA+GGG - chr3_3:42998816-42998835 None:intergenic 30.0%
AGAATCCAAAGGATATCATT+AGG - chr3_3:42998817-42998836 None:intergenic 30.0%
! ATAGCATGGGTTCTTTAAAA+AGG - chr3_3:42998868-42998887 None:intergenic 30.0%
AAGGCATGAAAACAATTCTT+CGG - chr3_3:42998953-42998972 None:intergenic 30.0%
! CGAGTTTTGCATTTACTAAA+GGG - chr3_3:42998993-42999012 None:intergenic 30.0%
! TCGAGTTTTGCATTTACTAA+AGG - chr3_3:42998994-42999013 None:intergenic 30.0%
CTATGAAATATTATCTGCAC+AGG + chr3_3:42999034-42999053 Msa0453070:intron 30.0%
!!! TTTCAGATCTTCTAGTTTTG+AGG - chr3_3:42999285-42999304 None:intergenic 30.0%
!!! TCTTACCTGTTCTTTTTTCT+GGG - chr3_3:42999495-42999514 None:intergenic 30.0%
!!! ATCTTACCTGTTCTTTTTTC+TGG - chr3_3:42999496-42999515 None:intergenic 30.0%
TCTGGTTATATGGTTTGATT+TGG + chr3_3:42999777-42999796 Msa0453070:intron 30.0%
! GAAGTGTTTGTAAATCACTA+TGG + chr3_3:42999885-42999904 Msa0453070:intron 30.0%
TGATATGGTAATTCGTGTAA+TGG - chr3_3:43000034-43000053 None:intergenic 30.0%
GAATCTTATGCACCAAAAAA+AGG - chr3_3:43000138-43000157 None:intergenic 30.0%
ATTAGGATTCACAAGACTAT+TGG - chr3_3:43000200-43000219 None:intergenic 30.0%
CCCTTTATGTAGAATGAATA+AGG - chr3_3:43000228-43000247 None:intergenic 30.0%
CATAAATGAGGCTAACATTA+GGG - chr3_3:43000314-43000333 None:intergenic 30.0%
! CATTTTATGGACAAGATGAA+GGG - chr3_3:43000445-43000464 None:intergenic 30.0%
CTGAACATGTGTTTAAAAGT+GGG + chr3_3:43000542-43000561 Msa0453070:intron 30.0%
TGAACATGTGTTTAAAAGTG+GGG + chr3_3:43000543-43000562 Msa0453070:intron 30.0%
! CAAAATTGACTCATGAATAG+TGG - chr3_3:43000633-43000652 None:intergenic 30.0%
! CACTATTCATGAGTCAATTT+TGG + chr3_3:43000631-43000650 Msa0453070:intron 30.0%
! ATTCATGAGTCAATTTTGGA+AGG + chr3_3:43000635-43000654 Msa0453070:intron 30.0%
GAATAGCTGATGTAGTATAT+TGG - chr3_3:43000881-43000900 None:intergenic 30.0%
GATTCTATTGAACTTATGAG+AGG + chr3_3:43000968-43000987 Msa0453070:intron 30.0%
! ATTATACTTCAAGAGTTGGT+AGG - chr3_3:43000995-43001014 None:intergenic 30.0%
GAAGATTATACTTCAAGAGT+TGG - chr3_3:43000999-43001018 None:intergenic 30.0%
AAAGAATTGTGAAGATCTAC+TGG - chr3_3:43001277-43001296 None:intergenic 30.0%
TATAAATTGATGAGTCTGAG+AGG + chr3_3:43001503-43001522 Msa0453070:intron 30.0%
GGTATACAAACAAAATCGAA+AGG + chr3_3:43001560-43001579 Msa0453070:intron 30.0%
TCAGATCTATTCATATCATG+TGG - chr3_3:43001644-43001663 None:intergenic 30.0%
TTTGATATAAAAGCAAGGGA+TGG - chr3_3:43001757-43001776 None:intergenic 30.0%
! ATCAAGCATTTTTACCACTT+AGG - chr3_3:43002194-43002213 None:intergenic 30.0%
TGATTTATGTACGTAGTATG+TGG + chr3_3:43002210-43002229 Msa0453070:three_prime_UTR 30.0%
! ACAAAATTAATTGGTCTGGT+TGG + chr3_3:43002251-43002270 Msa0453070:three_prime_UTR 30.0%
CTTGTGAATGGTGAAAATTG+CGG - chr3_3:42993039-42993058 None:intergenic 35.0%
! TTAAGGATTTAGGACCTGTT+TGG + chr3_3:42993300-42993319 Msa0453070:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr3_3:42993551-42993570 Msa0453070:intron 35.0%
AATTAAGGACCTGTTTGGAT+TGG - chr3_3:42993563-42993582 None:intergenic 35.0%
TTGCTAATTAAGGACCTGTT+TGG - chr3_3:42993568-42993587 None:intergenic 35.0%
AGGTCCTTAATTAGCAAGAA+TGG + chr3_3:42993571-42993590 Msa0453070:intron 35.0%
CCATCCATTCTTGCTAATTA+AGG - chr3_3:42993578-42993597 None:intergenic 35.0%
CCTTAATTAGCAAGAATGGA+TGG + chr3_3:42993575-42993594 Msa0453070:intron 35.0%
!! TGGGCTGATTTTGAGTAATT+AGG + chr3_3:42993720-42993739 Msa0453070:intron 35.0%
GTGAAGTAGATTGTGTGAAT+TGG + chr3_3:42993762-42993781 Msa0453070:five_prime_UTR 35.0%
GTAGATTGTGTGAATTGGAT+TGG + chr3_3:42993767-42993786 Msa0453070:five_prime_UTR 35.0%
GTTGAATGATGAATCGAAAC+GGG + chr3_3:42993912-42993931 Msa0453070:CDS 35.0%
AAATCTCTTCACTTGCGATA+TGG - chr3_3:42994025-42994044 None:intergenic 35.0%
TCGCAAGTGAAGAGATTTAT+AGG + chr3_3:42994027-42994046 Msa0453070:CDS 35.0%
AAGTGAAGAGATTTATAGGC+AGG + chr3_3:42994031-42994050 Msa0453070:CDS 35.0%
ATTTATAGGCAGGAGATTTC+TGG + chr3_3:42994041-42994060 Msa0453070:CDS 35.0%
! TTCAGATCCTTTTCCATATC+AGG - chr3_3:42994069-42994088 None:intergenic 35.0%
! TACTTTCACATGCTTTTGAC+AGG + chr3_3:42994493-42994512 Msa0453070:CDS 35.0%
TGATGTGTATTCTAATGCCA+AGG + chr3_3:42994590-42994609 Msa0453070:CDS 35.0%
ATCAGACACTCGATATTTAG+CGG - chr3_3:42994681-42994700 None:intergenic 35.0%
GATGGATGAGAAAGATGTTA+AGG + chr3_3:42994698-42994717 Msa0453070:CDS 35.0%
GAATTTGAGAATCTTGCATC+TGG + chr3_3:42994738-42994757 Msa0453070:CDS 35.0%
GAATCTTGCATCTGGATTAT+TGG + chr3_3:42994746-42994765 Msa0453070:CDS 35.0%
TCAATTAATGCTTCGTTGCA+AGG - chr3_3:42994786-42994805 None:intergenic 35.0%
! AACGAAGCATTAATTGAAGC+AGG + chr3_3:42994789-42994808 Msa0453070:CDS 35.0%
GATAATAATGTACTCACTGC+TGG - chr3_3:42994870-42994889 None:intergenic 35.0%
ACTCACTTGCATTCAACTTT+CGG - chr3_3:42994917-42994936 None:intergenic 35.0%
TTAGAGCCCATGTTGTTAAA+TGG + chr3_3:42995059-42995078 Msa0453070:intron 35.0%
TCGCTTCCATTTAACAACAT+GGG - chr3_3:42995068-42995087 None:intergenic 35.0%
ATCGCTTCCATTTAACAACA+TGG - chr3_3:42995069-42995088 None:intergenic 35.0%
ATGTTGTTAAATGGAAGCGA+TGG + chr3_3:42995068-42995087 Msa0453070:intron 35.0%
TGTTGTTAAATGGAAGCGAT+GGG + chr3_3:42995069-42995088 Msa0453070:intron 35.0%
TGCCATATGCAATTTGTGAA+GGG + chr3_3:42995132-42995151 Msa0453070:intron 35.0%
ATCCCTTCACAAATTGCATA+TGG - chr3_3:42995137-42995156 None:intergenic 35.0%
AAAAAACCAAATTGCTGCCT+AGG + chr3_3:42995279-42995298 Msa0453070:intron 35.0%
CAGCAAAAAAGTAATAGCAG+TGG - chr3_3:42995345-42995364 None:intergenic 35.0%
GCAATTTCTCATGTTTGTTC+AGG + chr3_3:42995444-42995463 Msa0453070:intron 35.0%
!! CTAATTTTTGGAAACGTTCC+AGG - chr3_3:42995649-42995668 None:intergenic 35.0%
! ACCGTGAAGGAACTAATTTT+TGG - chr3_3:42995661-42995680 None:intergenic 35.0%
! CTACTACACAAACTTTTCTG+TGG - chr3_3:42995920-42995939 None:intergenic 35.0%
AGTGGATATGTAGTAAGACA+TGG + chr3_3:42996027-42996046 Msa0453070:intron 35.0%
GTGGATATGTAGTAAGACAT+GGG + chr3_3:42996028-42996047 Msa0453070:intron 35.0%
TATGTAGTAAGACATGGGTA+TGG + chr3_3:42996033-42996052 Msa0453070:intron 35.0%
TAGAAGAACTGAGATGTTTC+AGG + chr3_3:42996270-42996289 Msa0453070:intron 35.0%
TTTGTTTAAGGATACTCCTC+GGG - chr3_3:42996301-42996320 None:intergenic 35.0%
! CTTTGTTTAAGGATACTCCT+CGG - chr3_3:42996302-42996321 None:intergenic 35.0%
! TCAGACCAAGTCTTTGTTTA+AGG - chr3_3:42996313-42996332 None:intergenic 35.0%
ACATGTTTCAAGAAGTTCTC+GGG + chr3_3:42996529-42996548 Msa0453070:intron 35.0%
ATAACCTATGAGTATGGTGT+CGG + chr3_3:42996621-42996640 Msa0453070:intron 35.0%
GTATAGACTTCATTGCTATG+AGG + chr3_3:42996856-42996875 Msa0453070:intron 35.0%
! CATCTATAGAAAGCTGATTC+TGG - chr3_3:42996954-42996973 None:intergenic 35.0%
TGTGCACTTTCTTTGCTAAA+AGG + chr3_3:42996972-42996991 Msa0453070:intron 35.0%
GAATCAATAGCACAAGAATG+TGG - chr3_3:42997019-42997038 None:intergenic 35.0%
! TTGACCACTTCTTTTCAGAT+CGG + chr3_3:42997088-42997107 Msa0453070:intron 35.0%
TTGATTCAGCTACAGTAAGT+AGG + chr3_3:42997188-42997207 Msa0453070:intron 35.0%
AACAGAATTGGTACTATCTG+AGG - chr3_3:42997356-42997375 None:intergenic 35.0%
ACAGTACTTACATAACTTGG+TGG - chr3_3:42997418-42997437 None:intergenic 35.0%
AGAGTTAAGTCACTTAAGCA+GGG - chr3_3:42997450-42997469 None:intergenic 35.0%
AAGAGTTAAGTCACTTAAGC+AGG - chr3_3:42997451-42997470 None:intergenic 35.0%
! TTTCTGTCGTACCATTTTAC+AGG + chr3_3:42997885-42997904 Msa0453070:intron 35.0%
TAGACAATCTGCCTGTAAAA+TGG - chr3_3:42997899-42997918 None:intergenic 35.0%
GCAGTGAATGAGAATTTCTA+TGG + chr3_3:42997952-42997971 Msa0453070:CDS 35.0%
GTGAATGAGAATTTCTATGG+TGG + chr3_3:42997955-42997974 Msa0453070:CDS 35.0%
! TTTCTATGGTGGAATGACAA+TGG + chr3_3:42997966-42997985 Msa0453070:CDS 35.0%
!! CTAACTGGAGTTCTTTTTCA+TGG - chr3_3:42998008-42998027 None:intergenic 35.0%
!! CAAGGTGTTCTTCTTTTCTT+TGG - chr3_3:42998058-42998077 None:intergenic 35.0%
CAAAGAAAAGAAGAACACCT+TGG + chr3_3:42998056-42998075 Msa0453070:CDS 35.0%
! TGTTTCAGATCAAGTGTTGT+CGG + chr3_3:42998243-42998262 Msa0453070:intron 35.0%
GATCTAGAGATCAATGAGTT+GGG - chr3_3:42998535-42998554 None:intergenic 35.0%
AGATCTAGAGATCAATGAGT+TGG - chr3_3:42998536-42998555 None:intergenic 35.0%
AAATGTTATGTGGGGTAAGA+TGG - chr3_3:42998659-42998678 None:intergenic 35.0%
! AGGAAGTGCAAATGTTATGT+GGG - chr3_3:42998668-42998687 None:intergenic 35.0%
! AAGGAAGTGCAAATGTTATG+TGG - chr3_3:42998669-42998688 None:intergenic 35.0%
ATAACATTTGCACTTCCTTG+TGG + chr3_3:42998670-42998689 Msa0453070:intron 35.0%
!!! TTCCAACACAAGGTTTTAGA+GGG - chr3_3:42998709-42998728 None:intergenic 35.0%
ACTTGAAGGGTGAAAAACAA+CGG - chr3_3:42998735-42998754 None:intergenic 35.0%
AAAGGATATCATTAGGGGTT+AGG - chr3_3:42998810-42998829 None:intergenic 35.0%
TAACCCCTAATGATATCCTT+TGG + chr3_3:42998809-42998828 Msa0453070:intron 35.0%
!!! AGTAAAGTGGAAGTTTTGAG+TGG + chr3_3:42998898-42998917 Msa0453070:intron 35.0%
AACAGCTCTTCAACACATAT+CGG + chr3_3:42999156-42999175 Msa0453070:intron 35.0%
CAGCTACAGAAATAGTAGAT+TGG - chr3_3:42999363-42999382 None:intergenic 35.0%
!! CAATCTACTATTTCTGTAGC+TGG + chr3_3:42999361-42999380 Msa0453070:intron 35.0%
TCTTTGTACCGAATCTCAAT+TGG - chr3_3:42999392-42999411 None:intergenic 35.0%
!!! CTTACCTGTTCTTTTTTCTG+GGG - chr3_3:42999494-42999513 None:intergenic 35.0%
AATATTGGGTCGACATTCTT+AGG - chr3_3:42999662-42999681 None:intergenic 35.0%
AGAATGTCGACCCAATATTA+TGG + chr3_3:42999663-42999682 Msa0453070:CDS 35.0%
! TCATATTAAGAGCGCAATAG+AGG + chr3_3:42999691-42999710 Msa0453070:CDS 35.0%
! ATCTAGCATTTTGTGACAGT+AGG - chr3_3:42999998-43000017 None:intergenic 35.0%
ACGAATTACCATATCACCAT+GGG + chr3_3:43000038-43000057 Msa0453070:intron 35.0%
AGGAAATTGAAGGAGATGAT+AGG - chr3_3:43000163-43000182 None:intergenic 35.0%
ATTAGGGTTCACAATGCTAA+TGG - chr3_3:43000298-43000317 None:intergenic 35.0%
GCATAAATGAGGCTAACATT+AGG - chr3_3:43000315-43000334 None:intergenic 35.0%
CTCTTGATGTAGCATAAATG+AGG - chr3_3:43000326-43000345 None:intergenic 35.0%
CTCATTTATGCTACATCAAG+AGG + chr3_3:43000324-43000343 Msa0453070:intron 35.0%
! GCATTTTATGGACAAGATGA+AGG - chr3_3:43000446-43000465 None:intergenic 35.0%
! AATGAGGGACTCTTTTAACA+TGG - chr3_3:43000508-43000527 None:intergenic 35.0%
ATGTTAAAAGAGTCCCTCAT+TGG + chr3_3:43000507-43000526 Msa0453070:intron 35.0%
!! CCACTTTTAAACACATGTTC+AGG - chr3_3:43000544-43000563 None:intergenic 35.0%
CCTGAACATGTGTTTAAAAG+TGG + chr3_3:43000541-43000560 Msa0453070:intron 35.0%
GAACATGTGTTTAAAAGTGG+GGG + chr3_3:43000544-43000563 Msa0453070:intron 35.0%
TTTGGAAGGAGTTACTCAAA+TGG + chr3_3:43000649-43000668 Msa0453070:intron 35.0%
TTGGAAGGAGTTACTCAAAT+GGG + chr3_3:43000650-43000669 Msa0453070:intron 35.0%
TAGTATATTGGCAAGGAATG+AGG - chr3_3:43000869-43000888 None:intergenic 35.0%
TTACATGATAGTCCCTTAAG+AGG - chr3_3:43000933-43000952 None:intergenic 35.0%
!!! CAAAGTTTTGAAGTGCATAG+GGG - chr3_3:43001026-43001045 None:intergenic 35.0%
!!! CCAAAGTTTTGAAGTGCATA+GGG - chr3_3:43001027-43001046 None:intergenic 35.0%
!!! ACCAAAGTTTTGAAGTGCAT+AGG - chr3_3:43001028-43001047 None:intergenic 35.0%
! TTGGTGAGTACGACTTTTTA+TGG + chr3_3:43001043-43001062 Msa0453070:intron 35.0%
AGTTCCACTCATAAAAGACA+TGG - chr3_3:43001162-43001181 None:intergenic 35.0%
! ACAATTCTTTTCGACGTTCT+AGG + chr3_3:43001287-43001306 Msa0453070:intron 35.0%
ATGCATCATCTATGTTTGTG+AGG + chr3_3:43001355-43001374 Msa0453070:intron 35.0%
TGCATCATCTATGTTTGTGA+GGG + chr3_3:43001356-43001375 Msa0453070:intron 35.0%
GAGGATCTATCCAAATAATC+AGG + chr3_3:43001522-43001541 Msa0453070:intron 35.0%
CTCCGAAAAACCTGATTATT+TGG - chr3_3:43001535-43001554 None:intergenic 35.0%
! AAGCAATGTTTTACAGAAGC+AGG - chr3_3:43001705-43001724 None:intergenic 35.0%
TCAATGTATTCACGGATGAT+TGG - chr3_3:43001908-43001927 None:intergenic 35.0%
! CTATACTTGTCAGAAGGTAT+CGG - chr3_3:43001969-43001988 None:intergenic 35.0%
!! AAAATCTCTAGAATCCTTGG+AGG - chr3_3:43002101-43002120 None:intergenic 35.0%
TCAAATAGGTTATGCCTAAG+TGG + chr3_3:43002177-43002196 Msa0453070:three_prime_UTR 35.0%
! CGCAATTTTCACCATTCACA+AGG + chr3_3:42993037-42993056 Msa0453070:five_prime_UTR 40.0%
TAGCAAGAATGGATGGAGTT+TGG + chr3_3:42993582-42993601 Msa0453070:intron 40.0%
! TGAGAACTGTGTTATTGCTG+TGG + chr3_3:42993864-42993883 Msa0453070:CDS 40.0%
! CTTGCGATATGGTTGACTTT+GGG - chr3_3:42994014-42994033 None:intergenic 40.0%
! ACTTGCGATATGGTTGACTT+TGG - chr3_3:42994015-42994034 None:intergenic 40.0%
! GAGATTTCTGGATCCTGATA+TGG + chr3_3:42994053-42994072 Msa0453070:CDS 40.0%
TCTGGATCCTGATATGGAAA+AGG + chr3_3:42994059-42994078 Msa0453070:CDS 40.0%
TCCCTCTTGAAACTTCTCAA+GGG + chr3_3:42994094-42994113 Msa0453070:CDS 40.0%
CCAATAACACAATCCGAGAT+GGG - chr3_3:42994243-42994262 None:intergenic 40.0%
ACCAATAACACAATCCGAGA+TGG - chr3_3:42994244-42994263 None:intergenic 40.0%
ACTGCAACTGCTCTTAGTTA+TGG + chr3_3:42994357-42994376 Msa0453070:CDS 40.0%
! ATGCTTTTGACAGGAGCTTA+GGG + chr3_3:42994502-42994521 Msa0453070:CDS 40.0%
!!! AGTTTTGAGTGCAAATCCAG+AGG + chr3_3:42994653-42994672 Msa0453070:CDS 40.0%
GCTAAATATCGAGTGTCTGA+TGG + chr3_3:42994680-42994699 Msa0453070:CDS 40.0%
TGCAGAGAAGATTTCTTCTG+TGG + chr3_3:42994818-42994837 Msa0453070:CDS 40.0%
ATTTCTTCTGTGGAGCTAGT+TGG + chr3_3:42994828-42994847 Msa0453070:CDS 40.0%
GTTGTTAAATGGAAGCGATG+GGG + chr3_3:42995070-42995089 Msa0453070:intron 40.0%
TCACAAATTGCATATGGCAG+TGG - chr3_3:42995131-42995150 None:intergenic 40.0%
CTGCCATATGCAATTTGTGA+AGG + chr3_3:42995131-42995150 Msa0453070:intron 40.0%
CATCGACAACACTGATCATT+GGG + chr3_3:42995219-42995238 Msa0453070:intron 40.0%
GATAAACCTAGGCAGCAATT+TGG - chr3_3:42995288-42995307 None:intergenic 40.0%
CTGCCTAGGTTTATCCTTAA+AGG + chr3_3:42995293-42995312 Msa0453070:intron 40.0%
CGAATTTCTGATAGACCAGA+TGG + chr3_3:42995514-42995533 Msa0453070:CDS 40.0%
! TTTGGGAAAAGTACACCATC+TGG - chr3_3:42995532-42995551 None:intergenic 40.0%
! GATGGTGTACTTTTCCCAAA+AGG + chr3_3:42995532-42995551 Msa0453070:CDS 40.0%
AAGACCACAGTACTTGGAAT+GGG - chr3_3:42995562-42995581 None:intergenic 40.0%
!! ACAAATCAGTTGGCTTGGAT+GGG - chr3_3:42995585-42995604 None:intergenic 40.0%
TCCAAATGGGACAAATCAGT+TGG - chr3_3:42995595-42995614 None:intergenic 40.0%
TGCGTAGAAAGCTTCCAAAT+GGG - chr3_3:42995608-42995627 None:intergenic 40.0%
TTGCGTAGAAAGCTTCCAAA+TGG - chr3_3:42995609-42995628 None:intergenic 40.0%
AATGAACATGAACTACCACC+TGG + chr3_3:42995628-42995647 Msa0453070:CDS 40.0%
!! ATTTTTGGAAACGTTCCAGG+TGG - chr3_3:42995646-42995665 None:intergenic 40.0%
CAATAACTAACAAGGAAGGG+GGG - chr3_3:42995769-42995788 None:intergenic 40.0%
GCAATAACTAACAAGGAAGG+GGG - chr3_3:42995770-42995789 None:intergenic 40.0%
CGCAATAACTAACAAGGAAG+GGG - chr3_3:42995771-42995790 None:intergenic 40.0%
GCGCAATAACTAACAAGGAA+GGG - chr3_3:42995772-42995791 None:intergenic 40.0%
TGCGCAATAACTAACAAGGA+AGG - chr3_3:42995773-42995792 None:intergenic 40.0%
AGCATGCGCAATAACTAACA+AGG - chr3_3:42995777-42995796 None:intergenic 40.0%
AAGCTATGAAGCGTAGATAG+TGG + chr3_3:42996009-42996028 Msa0453070:intron 40.0%
ACGGAGTATGCTTGTAAAGA+GGG + chr3_3:42996163-42996182 Msa0453070:intron 40.0%
CATGTTTCAAGAAGTTCTCG+GGG + chr3_3:42996530-42996549 Msa0453070:intron 40.0%
! TATGAGTATGGTGTCGGATA+CGG + chr3_3:42996627-42996646 Msa0453070:intron 40.0%
AGCTTATAGACTATGAAGCC+TGG - chr3_3:42996709-42996728 None:intergenic 40.0%
CCTAATTCAGAAATAGGGTG+AGG - chr3_3:42996837-42996856 None:intergenic 40.0%
!! CCTCACCCTATTTCTGAATT+AGG + chr3_3:42996834-42996853 Msa0453070:intron 40.0%
TACATTACCTGCATGCATAC+AGG + chr3_3:42997043-42997062 Msa0453070:intron 40.0%
CGAGTTCAACTAAATCTGCA+TGG + chr3_3:42997154-42997173 Msa0453070:CDS 40.0%
ATTCAGCTACAGTAAGTAGG+AGG + chr3_3:42997191-42997210 Msa0453070:intron 40.0%
TGAGACATCTAGTTATGCTG+TGG + chr3_3:42997254-42997273 Msa0453070:intron 40.0%
TCAGTTGATCAAGGATCACA+CGG + chr3_3:42997279-42997298 Msa0453070:intron 40.0%
! ATTGGTACTATCTGAGGTCT+CGG - chr3_3:42997350-42997369 None:intergenic 40.0%
AGTACCAATTCTGTTGCCAA+TGG + chr3_3:42997361-42997380 Msa0453070:CDS 40.0%
GAAAAGATAAGGCGAACAGA+AGG + chr3_3:42997920-42997939 Msa0453070:CDS 40.0%
ACTTCTCGTCTCATAGACAT+AGG - chr3_3:42998085-42998104 None:intergenic 40.0%
TGTCTATGAGACGAGAAGTA+AGG + chr3_3:42998086-42998105 Msa0453070:CDS 40.0%
!!! AGATCAAGTGTTGTCGGTTT+TGG + chr3_3:42998249-42998268 Msa0453070:intron 40.0%
! CAATGAGTTGGGTAGAGATA+TGG - chr3_3:42998524-42998543 None:intergenic 40.0%
! GGAAGTGCAAATGTTATGTG+GGG - chr3_3:42998667-42998686 None:intergenic 40.0%
!! CTTCCAACACAAGGTTTTAG+AGG - chr3_3:42998710-42998729 None:intergenic 40.0%
!! ATCAAGTGCTGACACTTGAA+GGG - chr3_3:42998748-42998767 None:intergenic 40.0%
GAAGAGAAGAATCCACAGTA+GGG - chr3_3:42998779-42998798 None:intergenic 40.0%
TTTACTAAAGGGTCGTGAGT+CGG - chr3_3:42998982-42999001 None:intergenic 40.0%
TAGATATGACATCCCTCTCT+TGG - chr3_3:42999196-42999215 None:intergenic 40.0%
AAGAGAGGGATGTCATATCT+AGG + chr3_3:42999195-42999214 Msa0453070:CDS 40.0%
!! TCTACTATTTCTGTAGCTGG+TGG + chr3_3:42999364-42999383 Msa0453070:intron 40.0%
! TGGTGGATCCAATTGAGATT+CGG + chr3_3:42999381-42999400 Msa0453070:CDS 40.0%
!!! TTCTTTTTTCTGGGGTGGAA+CGG - chr3_3:42999486-42999505 None:intergenic 40.0%
GAACAGGTAAGATAACTAGC+AGG + chr3_3:42999503-42999522 Msa0453070:intron 40.0%
TTAGCAATGAAGCAGAGCAT+TGG + chr3_3:42999603-42999622 Msa0453070:CDS 40.0%
GAGACAAATCACCTCATAAC+TGG + chr3_3:42999948-42999967 Msa0453070:intron 40.0%
CACGAATTACCATATCACCA+TGG + chr3_3:43000037-43000056 Msa0453070:intron 40.0%
! CTCACATGACATCTTTTGCT+TGG + chr3_3:43000064-43000083 Msa0453070:intron 40.0%
!!! TCTCTGGTTGGTCCTTTTTT+TGG + chr3_3:43000123-43000142 Msa0453070:intron 40.0%
GGATTCACAAGACTATTGGT+TGG - chr3_3:43000196-43000215 None:intergenic 40.0%
GAGTAGAATGACAGAGCAAA+GGG - chr3_3:43000394-43000413 None:intergenic 40.0%
TGAGTAGAATGACAGAGCAA+AGG - chr3_3:43000395-43000414 None:intergenic 40.0%
AAGGAGTTACTCAAATGGGT+GGG + chr3_3:43000654-43000673 Msa0453070:intron 40.0%
! TATCTCAGCCCAAACCTTTT+TGG + chr3_3:43000743-43000762 Msa0453070:intron 40.0%
! ATCTCAGCCCAAACCTTTTT+GGG + chr3_3:43000744-43000763 Msa0453070:intron 40.0%
GCCAATTCCCAAAAAGGTTT+GGG - chr3_3:43000754-43000773 None:intergenic 40.0%
TGCCAATTCCCAAAAAGGTT+TGG - chr3_3:43000755-43000774 None:intergenic 40.0%
!! ACCTTTTTGGGAATTGGCAA+AGG + chr3_3:43000756-43000775 Msa0453070:intron 40.0%
ACCTTTGCCAATTCCCAAAA+AGG - chr3_3:43000760-43000779 None:intergenic 40.0%
!! AGGTGCTGACTATATTTCTC+TGG + chr3_3:43000802-43000821 Msa0453070:intron 40.0%
GCTGATGTAGTATATTGGCA+AGG - chr3_3:43000876-43000895 None:intergenic 40.0%
!!! TTTTGAAGTGCATAGGGGAA+GGG - chr3_3:43001021-43001040 None:intergenic 40.0%
CCCTATGCACTTCAAAACTT+TGG + chr3_3:43001024-43001043 Msa0453070:intron 40.0%
GTCTATGAGAGGAGAGTTTA+TGG - chr3_3:43001081-43001100 None:intergenic 40.0%
! GCAACCATGTCTTTTATGAG+TGG + chr3_3:43001155-43001174 Msa0453070:intron 40.0%
!! TTTGTGAGGGAGTGTTGATA+GGG + chr3_3:43001369-43001388 Msa0453070:intron 40.0%
!! ATCAGGTTTTTCGGAGTTGA+TGG + chr3_3:43001539-43001558 Msa0453070:intron 40.0%
TGCACAACATAGTGAAATCC+AGG + chr3_3:43001812-43001831 Msa0453070:CDS 40.0%
TTGTCATCTTCGTCTTCTGA+AGG - chr3_3:43001841-43001860 None:intergenic 40.0%
TCTTTGTCATCTTCGTCTTC+TGG - chr3_3:43001844-43001863 None:intergenic 40.0%
CGAAGATGACAAAGACAAGT+TGG + chr3_3:43001876-43001895 Msa0453070:CDS 40.0%
CATCCGTGAATACATTGATG+AGG + chr3_3:43001910-43001929 Msa0453070:exon 40.0%
! AATTAGCCTCATGAGCAAGA+GGG - chr3_3:43002046-43002065 None:intergenic 40.0%
! AAATTAGCCTCATGAGCAAG+AGG - chr3_3:43002047-43002066 None:intergenic 40.0%
AGAATCCTTGGAGGAACAAA+TGG - chr3_3:43002092-43002111 None:intergenic 40.0%
! AAGGTGAGTTGAAATGAGCG+TGG + chr3_3:42993822-42993841 Msa0453070:exon 45.0%
! TGAGTTGAAATGAGCGTGGT+AGG + chr3_3:42993826-42993845 Msa0453070:exon 45.0%
GAGTTGAAATGAGCGTGGTA+GGG + chr3_3:42993827-42993846 Msa0453070:exon 45.0%
CTCCCTCTTGAAACTTCTCA+AGG + chr3_3:42994093-42994112 Msa0453070:CDS 45.0%
GCCCTTGAGAAGTTTCAAGA+GGG - chr3_3:42994098-42994117 None:intergenic 45.0%
TCTTGAAACTTCTCAAGGGC+CGG + chr3_3:42994098-42994117 Msa0453070:CDS 45.0%
TGAAACAAAACGCCACCATC+CGG - chr3_3:42994120-42994139 None:intergenic 45.0%
CCCATCTCGGATTGTGTTAT+TGG + chr3_3:42994240-42994259 Msa0453070:CDS 45.0%
GCAAGTCGGTGAAGTATGAT+GGG - chr3_3:42994269-42994288 None:intergenic 45.0%
TGCAAGTCGGTGAAGTATGA+TGG - chr3_3:42994270-42994289 None:intergenic 45.0%
ATATGCCCATCTCTGCAAGT+CGG - chr3_3:42994283-42994302 None:intergenic 45.0%
TTGACGCGGCAATAATTGCT+GGG + chr3_3:42994304-42994323 Msa0453070:CDS 45.0%
CATTGGTCAATGTGACACTC+AGG + chr3_3:42994434-42994453 Msa0453070:CDS 45.0%
! TGCATTGCAGCGTTTGAGTT+TGG + chr3_3:42994459-42994478 Msa0453070:CDS 45.0%
! GCATTGCAGCGTTTGAGTTT+GGG + chr3_3:42994460-42994479 Msa0453070:CDS 45.0%
! CGTTTGAGTTTGGGCAAATG+AGG + chr3_3:42994469-42994488 Msa0453070:CDS 45.0%
! CATGCTTTTGACAGGAGCTT+AGG + chr3_3:42994501-42994520 Msa0453070:CDS 45.0%
! TGCTTTTGACAGGAGCTTAG+GGG + chr3_3:42994503-42994522 Msa0453070:CDS 45.0%
CTAATGCCAAGGCTTGCATT+AGG + chr3_3:42994601-42994620 Msa0453070:CDS 45.0%
! AGCTAGTTGGTTCAGGTTCT+AGG + chr3_3:42994841-42994860 Msa0453070:CDS 45.0%
CTTGCATTCAACTTTCGGCT+CGG - chr3_3:42994912-42994931 None:intergenic 45.0%
TATTCTCGCACACGGTATGT+GGG - chr3_3:42994981-42995000 None:intergenic 45.0%
AAACCTCGTATTCTCGCACA+CGG - chr3_3:42994989-42995008 None:intergenic 45.0%
TTTGTGAAGGGATCTCACCA+TGG + chr3_3:42995144-42995163 Msa0453070:intron 45.0%
AAACATGCCATTGCAGCCTA+TGG - chr3_3:42995175-42995194 None:intergenic 45.0%
GCTGCAATGGCATGTTTATG+TGG + chr3_3:42995178-42995197 Msa0453070:intron 45.0%
ATGATCAGTGTTGTCGATGG+CGG - chr3_3:42995218-42995237 None:intergenic 45.0%
CCAATGATCAGTGTTGTCGA+TGG - chr3_3:42995221-42995240 None:intergenic 45.0%
CCATCGACAACACTGATCAT+TGG + chr3_3:42995218-42995237 Msa0453070:intron 45.0%
TCTCATGTTTGTTCAGGTCC+AGG + chr3_3:42995450-42995469 Msa0453070:intron 45.0%
! TTGGAATGGGATGGCCTTTT+GGG - chr3_3:42995549-42995568 None:intergenic 45.0%
GAAGACCACAGTACTTGGAA+TGG - chr3_3:42995563-42995582 None:intergenic 45.0%
!! GACAAATCAGTTGGCTTGGA+TGG - chr3_3:42995586-42995605 None:intergenic 45.0%
ATGGGACAAATCAGTTGGCT+TGG - chr3_3:42995590-42995609 None:intergenic 45.0%
!! GCCAACTGATTTGTCCCATT+TGG + chr3_3:42995591-42995610 Msa0453070:CDS 45.0%
CTAAACTGAGCATACCGTGA+AGG - chr3_3:42995674-42995693 None:intergenic 45.0%
AGCTCAAAAGGGAAAGCTCT+TGG - chr3_3:42995964-42995983 None:intergenic 45.0%
GGTATGGTAAGATGCGTACA+AGG + chr3_3:42996049-42996068 Msa0453070:intron 45.0%
GACGGAGTATGCTTGTAAAG+AGG + chr3_3:42996162-42996181 Msa0453070:intron 45.0%
GTATCCGACACCATACTCAT+AGG - chr3_3:42996628-42996647 None:intergenic 45.0%
GTAACAACCTGTATGCATGC+AGG - chr3_3:42997053-42997072 None:intergenic 45.0%
AGGACCGATCTGAAAAGAAG+TGG - chr3_3:42997095-42997114 None:intergenic 45.0%
TTTCAGATCGGTCCTATGCA+TGG + chr3_3:42997100-42997119 Msa0453070:intron 45.0%
CTACCTTGAGATCCATGCAT+AGG - chr3_3:42997115-42997134 None:intergenic 45.0%
GCATGGATCTCAAGGTAGTA+AGG + chr3_3:42997117-42997136 Msa0453070:CDS 45.0%
TGGTGGAGAATCACGCTTAT+TGG - chr3_3:42997401-42997420 None:intergenic 45.0%
AGAACTCCAGTTAGCTCAAC+AGG + chr3_3:42998014-42998033 Msa0453070:CDS 45.0%
CTCATAGACATAGGACTCCA+AGG - chr3_3:42998076-42998095 None:intergenic 45.0%
TGAGACGAGAAGTAAGGTAC+TGG + chr3_3:42998092-42998111 Msa0453070:intron 45.0%
GTTTATGCAGTCAGACACTG+AGG + chr3_3:42998167-42998186 Msa0453070:intron 45.0%
! GATGGTAGTCAAAGCACTAG+AGG - chr3_3:42998601-42998620 None:intergenic 45.0%
GTGCTTTGACTACCATCCAT+AGG + chr3_3:42998604-42998623 Msa0453070:intron 45.0%
ACCATCCATAGGATCTTCTC+CGG + chr3_3:42998615-42998634 Msa0453070:intron 45.0%
AAACACCGGAGAAGATCCTA+TGG - chr3_3:42998623-42998642 None:intergenic 45.0%
GCACATGGGGATTAAAACAC+CGG - chr3_3:42998637-42998656 None:intergenic 45.0%
!!! GGTTTTAGAGGGAGGTCTTT+GGG - chr3_3:42998698-42998717 None:intergenic 45.0%
!!! AGGTTTTAGAGGGAGGTCTT+TGG - chr3_3:42998699-42998718 None:intergenic 45.0%
!!! CAACACAAGGTTTTAGAGGG+AGG - chr3_3:42998706-42998725 None:intergenic 45.0%
!! CTCCCTCTAAAACCTTGTGT+TGG + chr3_3:42998704-42998723 Msa0453070:intron 45.0%
ACAACGGATCTTCCAACACA+AGG - chr3_3:42998719-42998738 None:intergenic 45.0%
!! GATCAAGTGCTGACACTTGA+AGG - chr3_3:42998749-42998768 None:intergenic 45.0%
CGAAGAGAAGAATCCACAGT+AGG - chr3_3:42998780-42998799 None:intergenic 45.0%
GGATATCATTAGGGGTTAGG+AGG - chr3_3:42998807-42998826 None:intergenic 45.0%
TTACTAAAGGGTCGTGAGTC+GGG - chr3_3:42998981-42999000 None:intergenic 45.0%
CTTTGCTAGTGACCAAGAGA+GGG + chr3_3:42999181-42999200 Msa0453070:CDS 45.0%
TAGGAGTTTGCAAGAGACTG+AGG + chr3_3:42999214-42999233 Msa0453070:CDS 45.0%
GTTTGCAAGAGACTGAGGAT+TGG + chr3_3:42999219-42999238 Msa0453070:CDS 45.0%
!! GACTGAGGATTGGCTTTATG+AGG + chr3_3:42999229-42999248 Msa0453070:CDS 45.0%
!! GAGGATTGGCTTTATGAGGA+CGG + chr3_3:42999233-42999252 Msa0453070:CDS 45.0%
TCCACCCCAGAAAAAAGAAC+AGG + chr3_3:42999487-42999506 Msa0453070:CDS 45.0%
!!! ACCTGTTCTTTTTTCTGGGG+TGG - chr3_3:42999491-42999510 None:intergenic 45.0%
!! AGAGCATTGGCTAACAGAGA+AGG + chr3_3:42999616-42999635 Msa0453070:CDS 45.0%
TCTGACTACTTCTCATTGCG+AGG + chr3_3:42999926-42999945 Msa0453070:intron 45.0%
CTGGTTGTCATCCAGTTATG+AGG - chr3_3:42999962-42999981 None:intergenic 45.0%
! TTTTGTGACAGTAGGTCCTC+TGG - chr3_3:42999990-43000009 None:intergenic 45.0%
AAATGCTAGATGTGCCCACA+TGG + chr3_3:43000007-43000026 Msa0453070:intron 45.0%
AATGCTAGATGTGCCCACAT+GGG + chr3_3:43000008-43000027 Msa0453070:intron 45.0%
ATTCGTGTAATGGCCCATGT+GGG - chr3_3:43000024-43000043 None:intergenic 45.0%
AATTCGTGTAATGGCCCATG+TGG - chr3_3:43000025-43000044 None:intergenic 45.0%
GTGAGTTTCCCATGGTGATA+TGG - chr3_3:43000049-43000068 None:intergenic 45.0%
GATGTCATGTGAGTTTCCCA+TGG - chr3_3:43000057-43000076 None:intergenic 45.0%
TGCTAGAATGGCACCTAGTT+TGG - chr3_3:43000365-43000384 None:intergenic 45.0%
! AAAGGGCTGTGTTGCTAGAA+TGG - chr3_3:43000377-43000396 None:intergenic 45.0%
GAAGGAGTTACTCAAATGGG+TGG + chr3_3:43000653-43000672 Msa0453070:intron 45.0%
CTCAACTGCTGATGAGCATA+TGG + chr3_3:43000679-43000698 Msa0453070:intron 45.0%
CATATGGTTACCTTGCGATC+TGG + chr3_3:43000695-43000714 Msa0453070:intron 45.0%
!! GCCCAAACCTTTTTGGGAAT+TGG + chr3_3:43000750-43000769 Msa0453070:intron 45.0%
AACTCAGAGCGACCTCTTAA+GGG + chr3_3:43000918-43000937 Msa0453070:intron 45.0%
!!! GTTTTGAAGTGCATAGGGGA+AGG - chr3_3:43001022-43001041 None:intergenic 45.0%
! GAGTACGACTTTTTATGGCC+AGG + chr3_3:43001048-43001067 Msa0453070:intron 45.0%
AGAGTTTATGGAAGTGGTCC+TGG - chr3_3:43001069-43001088 None:intergenic 45.0%
GAGAGGAGAGTTTATGGAAG+TGG - chr3_3:43001075-43001094 None:intergenic 45.0%
!! GTTTGTGAGGGAGTGTTGAT+AGG + chr3_3:43001368-43001387 Msa0453070:intron 45.0%
!!! GTCTGTTGACGGATTTTCAG+AGG + chr3_3:43001787-43001806 Msa0453070:intron 45.0%
GCGCCTCATCAATGTATTCA+CGG - chr3_3:43001916-43001935 None:intergenic 45.0%
! ATTAGCCTCATGAGCAAGAG+GGG - chr3_3:43002045-43002064 None:intergenic 45.0%
GACAACCATTTGTTCCTCCA+AGG + chr3_3:43002084-43002103 Msa0453070:three_prime_UTR 45.0%
AGCGTGGTAGGGTTTGACAT+TGG + chr3_3:42993838-42993857 Msa0453070:CDS 50.0%
!! ATTGCTGTGGCAAAGCATCG+CGG + chr3_3:42993877-42993896 Msa0453070:CDS 50.0%
! GCGAGAAGCAGCGGTTTTTA+GGG + chr3_3:42993959-42993978 Msa0453070:CDS 50.0%
GGCCCTTGAGAAGTTTCAAG+AGG - chr3_3:42994099-42994118 None:intergenic 50.0%
!! AGATTTGGAGGCACCCATCT+CGG + chr3_3:42994227-42994246 Msa0453070:CDS 50.0%
!! ACTTCACCGACTTGCAGAGA+TGG + chr3_3:42994274-42994293 Msa0453070:CDS 50.0%
!! CTTCACCGACTTGCAGAGAT+GGG + chr3_3:42994275-42994294 Msa0453070:CDS 50.0%
GAGATGGGCATATCTTGACG+CGG + chr3_3:42994290-42994309 Msa0453070:CDS 50.0%
CTTGACGCGGCAATAATTGC+TGG + chr3_3:42994303-42994322 Msa0453070:CDS 50.0%
! TTGCTGGGTTGAAGCCTTTG+AGG + chr3_3:42994319-42994338 Msa0453070:CDS 50.0%
CAGTCGTGTATCAGCCTCAA+AGG - chr3_3:42994336-42994355 None:intergenic 50.0%
! GCTTTTGACAGGAGCTTAGG+GGG + chr3_3:42994504-42994523 Msa0453070:CDS 50.0%
! CTTTTGACAGGAGCTTAGGG+GGG + chr3_3:42994505-42994524 Msa0453070:CDS 50.0%
TCGATATTTAGCGGTGCCTC+TGG - chr3_3:42994672-42994691 None:intergenic 50.0%
! TCTGTGGAGCTAGTTGGTTC+AGG + chr3_3:42994834-42994853 Msa0453070:CDS 50.0%
GTATTCTCGCACACGGTATG+TGG - chr3_3:42994982-42995001 None:intergenic 50.0%
ATACCGTGTGCGAGAATACG+AGG + chr3_3:42994983-42995002 Msa0453070:CDS 50.0%
AGTACCACACCACTACACCA+TGG - chr3_3:42995099-42995118 None:intergenic 50.0%
! CTTGGAATGGGATGGCCTTT+TGG - chr3_3:42995550-42995569 None:intergenic 50.0%
CCACAGTACTTGGAATGGGA+TGG - chr3_3:42995558-42995577 None:intergenic 50.0%
! CCATCCCATTCCAAGTACTG+TGG + chr3_3:42995555-42995574 Msa0453070:CDS 50.0%
GATGGGAAGACCACAGTACT+TGG - chr3_3:42995568-42995587 None:intergenic 50.0%
TTGCGCATGCTCTTCTGTCT+TGG + chr3_3:42995786-42995805 Msa0453070:intron 50.0%
! TAGGGTGAGGTGTCTTGCAA+TGG - chr3_3:42996824-42996843 None:intergenic 50.0%
GGTCCTATGCATGGATCTCA+AGG + chr3_3:42997109-42997128 Msa0453070:CDS 50.0%
GCTGTGGCTTCAGTTGATCA+AGG + chr3_3:42997270-42997289 Msa0453070:intron 50.0%
! CTATCTGAGGTCTCGGACTT+AGG - chr3_3:42997343-42997362 None:intergenic 50.0%
AGCGCCATTGGCAACAGAAT+TGG - chr3_3:42997368-42997387 None:intergenic 50.0%
GGTACTATCTTCAGCGCCAT+TGG - chr3_3:42997380-42997399 None:intergenic 50.0%
CTCTGTCCTGTTGAGCTAAC+TGG - chr3_3:42998023-42998042 None:intergenic 50.0%
! CTAAGTGGTGGGATTAGGCT+TGG - chr3_3:42998453-42998472 None:intergenic 50.0%
AGCCTAATCCCACCACTTAG+TGG + chr3_3:42998453-42998472 Msa0453070:intron 50.0%
GCCTAATCCCACCACTTAGT+GGG + chr3_3:42998454-42998473 Msa0453070:intron 50.0%
CCTAATCCCACCACTTAGTG+GGG + chr3_3:42998455-42998474 Msa0453070:intron 50.0%
ATGTAGCCAACCCCACTAAG+TGG - chr3_3:42998468-42998487 None:intergenic 50.0%
! AGTCAAAGCACTAGAGGCAG+AGG - chr3_3:42998595-42998614 None:intergenic 50.0%
ACCGGAGAAGATCCTATGGA+TGG - chr3_3:42998619-42998638 None:intergenic 50.0%
TGTGGGGTAAGATGGCACAT+GGG - chr3_3:42998651-42998670 None:intergenic 50.0%
ATGTGGGGTAAGATGGCACA+TGG - chr3_3:42998652-42998671 None:intergenic 50.0%
TGATCCACAGAACCCTACTG+TGG + chr3_3:42998764-42998783 Msa0453070:intron 50.0%
GAATCCACAGTAGGGTTCTG+TGG - chr3_3:42998771-42998790 None:intergenic 50.0%
GCTTTGCTAGTGACCAAGAG+AGG + chr3_3:42999180-42999199 Msa0453070:CDS 50.0%
GCGCAATAGAGGAGCTAAAC+AGG + chr3_3:42999702-42999721 Msa0453070:CDS 50.0%
ATGACAACCAGCCTTTCCAG+AGG + chr3_3:42999971-42999990 Msa0453070:intron 50.0%
! TGACAGTAGGTCCTCTGGAA+AGG - chr3_3:42999985-43000004 None:intergenic 50.0%
TTGAGTCTCCTCTCACTCTC+TGG + chr3_3:43000107-43000126 Msa0453070:intron 50.0%
GTCCCTCATTGGATGTGAGA+TGG + chr3_3:43000518-43000537 Msa0453070:intron 50.0%
GGCCATCTCACATCCAATGA+GGG - chr3_3:43000523-43000542 None:intergenic 50.0%
AGGCCATCTCACATCCAATG+AGG - chr3_3:43000524-43000543 None:intergenic 50.0%
ACAAAACTGGCTGTGAGGTG+AGG - chr3_3:43000574-43000593 None:intergenic 50.0%
TGTGGTTGGGCACACAAAAC+TGG - chr3_3:43000587-43000606 None:intergenic 50.0%
AGCACGTTAACCAGATCGCA+AGG - chr3_3:43000708-43000727 None:intergenic 50.0%
AAAGGTTGCAGTAAGCCAGC+TGG + chr3_3:43000774-43000793 Msa0453070:intron 50.0%
CAGTAAGCCAGCTGGAGTTA+AGG + chr3_3:43000782-43000801 Msa0453070:intron 50.0%
! GAGGTCGCTCTGAGTTCTTT+AGG - chr3_3:43000914-43000933 None:intergenic 50.0%
GAACTCAGAGCGACCTCTTA+AGG + chr3_3:43000917-43000936 Msa0453070:intron 50.0%
TCTCCTCTCATAGACTGACC+TGG + chr3_3:43001086-43001105 Msa0453070:intron 50.0%
GAACCAGGTCAGTCTATGAG+AGG - chr3_3:43001092-43001111 None:intergenic 50.0%
!! TTCGTCTTCTGAAGGTGTCC+TGG - chr3_3:43001833-43001852 None:intergenic 50.0%
TTAGCCTCATGAGCAAGAGG+GGG - chr3_3:43002044-43002063 None:intergenic 50.0%
!! TTGCTGTGGCAAAGCATCGC+GGG + chr3_3:42993878-42993897 Msa0453070:CDS 55.0%
TCTGCTTTGGCGAGAAGCAG+CGG + chr3_3:42993950-42993969 Msa0453070:CDS 55.0%
! GGCGAGAAGCAGCGGTTTTT+AGG + chr3_3:42993958-42993977 Msa0453070:CDS 55.0%
!!! CAGCGGTTTTTAGGGTCTGC+TGG + chr3_3:42993967-42993986 Msa0453070:CDS 55.0%
GAAACTTCTCAAGGGCCGGA+TGG + chr3_3:42994102-42994121 Msa0453070:CDS 55.0%
ACGCAGCCTAATGCAAGCCT+TGG - chr3_3:42994610-42994629 None:intergenic 55.0%
GCAAGTGAGTGTGTAGCTCG+TGG + chr3_3:42994927-42994946 Msa0453070:CDS 55.0%
GTGAAGGGATCTCACCATGG+TGG + chr3_3:42995147-42995166 Msa0453070:intron 55.0%
!! TCAGTGTTGTCGATGGCGGA+AGG - chr3_3:42995214-42995233 None:intergenic 55.0%
!! GATGTTTCAGGAAGTGCCCG+AGG + chr3_3:42996282-42996301 Msa0453070:intron 55.0%
AGCTCAACAGGACAGAGCTG+TGG + chr3_3:42998026-42998045 Msa0453070:CDS 55.0%
! CCCCACTAAGTGGTGGGATT+AGG - chr3_3:42998458-42998477 None:intergenic 55.0%
ATCCCACCACTTAGTGGGGT+TGG + chr3_3:42998459-42998478 Msa0453070:intron 55.0%
AGCCAACCCCACTAAGTGGT+GGG - chr3_3:42998464-42998483 None:intergenic 55.0%
TAGCCAACCCCACTAAGTGG+TGG - chr3_3:42998465-42998484 None:intergenic 55.0%
GTGGGGTAAGATGGCACATG+GGG - chr3_3:42998650-42998669 None:intergenic 55.0%
! AGTAGGTCCTCTGGAAAGGC+TGG - chr3_3:42999981-43000000 None:intergenic 55.0%
GTCTCCTCTCACTCTCTGGT+TGG + chr3_3:43000111-43000130 Msa0453070:intron 55.0%
AGGACCAACCAGAGAGTGAG+AGG - chr3_3:43000118-43000137 None:intergenic 55.0%
GGCACACAAAACTGGCTGTG+AGG - chr3_3:43000579-43000598 None:intergenic 55.0%
GTCAGCACCTTAACTCCAGC+TGG - chr3_3:43000792-43000811 None:intergenic 55.0%
TAGCCTCATGAGCAAGAGGG+GGG - chr3_3:43002043-43002062 None:intergenic 55.0%
ACCCCTGCTGTCGTCTGCTT+TGG + chr3_3:42993937-42993956 Msa0453070:CDS 60.0%
GCCAAAGCAGACGACAGCAG+GGG - chr3_3:42993941-42993960 None:intergenic 60.0%
CGCCAAAGCAGACGACAGCA+GGG - chr3_3:42993942-42993961 None:intergenic 60.0%
TCGCCAAAGCAGACGACAGC+AGG - chr3_3:42993943-42993962 None:intergenic 60.0%
ACTTCTCAAGGGCCGGATGG+TGG + chr3_3:42994105-42994124 Msa0453070:CDS 60.0%
TTGACAGGAGCTTAGGGGGG+AGG + chr3_3:42994508-42994527 Msa0453070:CDS 60.0%
TGACAGGAGCTTAGGGGGGA+GGG + chr3_3:42994509-42994528 Msa0453070:CDS 60.0%
ATGGGGCTGCCATGGTGTAG+TGG + chr3_3:42995087-42995106 Msa0453070:intron 60.0%
GCTGCCATGGTGTAGTGGTG+TGG + chr3_3:42995092-42995111 Msa0453070:intron 60.0%
! TCTCACCATGGTGGCGCCAT+AGG + chr3_3:42995156-42995175 Msa0453070:intron 60.0%
! GGAGGTCTTTGGGAGCCACA+AGG - chr3_3:42998688-42998707 None:intergenic 60.0%
GGTCGTGAGTCGGGACAGAA+AGG - chr3_3:42998972-42998991 None:intergenic 60.0%
AGCCTCATGAGCAAGAGGGG+GGG - chr3_3:43002042-43002061 None:intergenic 60.0%
AGGGGGGAGGGACTTTGACG+AGG + chr3_3:42994521-42994540 Msa0453070:CDS 65.0%
TGGAAGCGATGGGGCTGCCA+TGG + chr3_3:42995079-42995098 Msa0453070:intron 65.0%
TGCAGCCTATGGCGCCACCA+TGG - chr3_3:42995164-42995183 None:intergenic 65.0%
GGTGGCGCCATAGGCTGCAA+TGG + chr3_3:42995165-42995184 Msa0453070:intron 65.0%
TCATGAGCAAGAGGGGGGGG+GGG - chr3_3:43002038-43002057 None:intergenic 65.0%
CTCATGAGCAAGAGGGGGGG+GGG - chr3_3:43002039-43002058 None:intergenic 65.0%
CCTCATGAGCAAGAGGGGGG+GGG - chr3_3:43002040-43002059 None:intergenic 65.0%
GCCTCATGAGCAAGAGGGGG+GGG - chr3_3:43002041-43002060 None:intergenic 65.0%
ATGAGCAAGAGGGGGGGGGG+GGG - chr3_3:43002036-43002055 None:intergenic 70.0%
CATGAGCAAGAGGGGGGGGG+GGG - chr3_3:43002037-43002056 None:intergenic 70.0%
CCCCCCCCCTCTTGCTCATG+AGG + chr3_3:43002037-43002056 Msa0453070:three_prime_UTR 70.0%
TGAGCAAGAGGGGGGGGGGG+GGG - chr3_3:43002035-43002054 None:intergenic 75.0%
! AGCAAGAGGGGGGGGGGGGG+GGG - chr3_3:43002033-43002052 None:intergenic 80.0%
! GAGCAAGAGGGGGGGGGGGG+GGG - chr3_3:43002034-43002053 None:intergenic 80.0%
! AAGAGGGGGGGGGGGGGGGG+GGG - chr3_3:43002030-43002049 None:intergenic 85.0%
! CAAGAGGGGGGGGGGGGGGG+GGG - chr3_3:43002031-43002050 None:intergenic 85.0%
! GCAAGAGGGGGGGGGGGGGG+GGG - chr3_3:43002032-43002051 None:intergenic 85.0%
! AGAGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002029-43002048 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002027-43002046 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG - chr3_3:43002028-43002047 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 42992977 43002274 42992977 ID=Msa0453070;Name=Msa0453070
chr3_3 mRNA 42992977 43002274 42992977 ID=Msa0453070-mRNA-1;Parent=Msa0453070;Name=Msa0453070-mRNA-1;_AED=0.07;_eAED=0.07;_QI=199|1|1|1|0.8|0.72|11|356|780
chr3_3 exon 42992977 42993058 42992977 ID=Msa0453070-mRNA-1:exon:7801;Parent=Msa0453070-mRNA-1
chr3_3 exon 42993695 42993718 42993695 ID=Msa0453070-mRNA-1:exon:7802;Parent=Msa0453070-mRNA-1
chr3_3 exon 42993742 42995004 42993742 ID=Msa0453070-mRNA-1:exon:7803;Parent=Msa0453070-mRNA-1
chr3_3 exon 42995466 42995678 42995466 ID=Msa0453070-mRNA-1:exon:7804;Parent=Msa0453070-mRNA-1
chr3_3 exon 42997106 42997201 42997106 ID=Msa0453070-mRNA-1:exon:7805;Parent=Msa0453070-mRNA-1
chr3_3 exon 42997283 42997426 42997283 ID=Msa0453070-mRNA-1:exon:7806;Parent=Msa0453070-mRNA-1
chr3_3 exon 42997907 42998107 42997907 ID=Msa0453070-mRNA-1:exon:7807;Parent=Msa0453070-mRNA-1
chr3_3 exon 42999161 42999307 42999161 ID=Msa0453070-mRNA-1:exon:7808;Parent=Msa0453070-mRNA-1
chr3_3 exon 42999380 42999508 42999380 ID=Msa0453070-mRNA-1:exon:7809;Parent=Msa0453070-mRNA-1
chr3_3 exon 42999593 42999723 42999593 ID=Msa0453070-mRNA-1:exon:7810;Parent=Msa0453070-mRNA-1
chr3_3 exon 43001807 43002274 43001807 ID=Msa0453070-mRNA-1:exon:7811;Parent=Msa0453070-mRNA-1
chr3_3 five_prime_UTR 42992977 42993058 42992977 ID=Msa0453070-mRNA-1:five_prime_utr;Parent=Msa0453070-mRNA-1
chr3_3 five_prime_UTR 42993695 42993718 42993695 ID=Msa0453070-mRNA-1:five_prime_utr;Parent=Msa0453070-mRNA-1
chr3_3 five_prime_UTR 42993742 42993834 42993742 ID=Msa0453070-mRNA-1:five_prime_utr;Parent=Msa0453070-mRNA-1
chr3_3 CDS 42993835 42995004 42993835 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 CDS 42995466 42995678 42995466 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 CDS 42997106 42997201 42997106 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 CDS 42997283 42997426 42997283 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 CDS 42997907 42998107 42997907 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 CDS 42999161 42999307 42999161 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 CDS 42999380 42999508 42999380 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 CDS 42999593 42999723 42999593 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 CDS 43001807 43001918 43001807 ID=Msa0453070-mRNA-1:cds;Parent=Msa0453070-mRNA-1
chr3_3 three_prime_UTR 43001919 43002274 43001919 ID=Msa0453070-mRNA-1:three_prime_utr;Parent=Msa0453070-mRNA-1
Gene Sequence

>Msa0453070

ATGAGCGTGGTAGGGTTTGACATTGGTAATGAGAACTGTGTTATTGCTGTGGCAAAGCATCGCGGGATTGATGTTTTGTTGAATGATGAATCGAAACGGGAAACCCCTGCTGTCGTCTGCTTTGGCGAGAAGCAGCGGTTTTTAGGGTCTGCTGGTGCTGCTTCTGCTATGATGCACCCAAAGTCAACCATATCGCAAGTGAAGAGATTTATAGGCAGGAGATTTCTGGATCCTGATATGGAAAAGGATCTGAAAATGCTCCCTCTTGAAACTTCTCAAGGGCCGGATGGTGGCGTTTTGTTTCATTTGAAATACTTAGATGGGATTCATACGTTTACGCCAGTTCAAATAATGTCTATGCTCTTTGCTCACTTGAAGACTATGACAGAAAAAGATTTGGAGGCACCCATCTCGGATTGTGTTATTGGTATCCCATCATACTTCACCGACTTGCAGAGATGGGCATATCTTGACGCGGCAATAATTGCTGGGTTGAAGCCTTTGAGGCTGATACACGACTGTACTGCAACTGCTCTTAGTTATGGAATTTACAAAACAAATTTTCAGAGTGATGGTCCAAGTTATGTTGCATTTATTGACATTGGTCAATGTGACACTCAGGTCTGCATTGCAGCGTTTGAGTTTGGGCAAATGAGGATACTTTCACATGCTTTTGACAGGAGCTTAGGGGGGAGGGACTTTGACGAGGTTCTGTTTACTCATTTTGCTGAAAAATTCAAGGAACAGTACAAAATTGATGTGTATTCTAATGCCAAGGCTTGCATTAGGCTGCGTGCTGCATGTGAGAAATTGAAGAAAGTTTTGAGTGCAAATCCAGAGGCACCGCTAAATATCGAGTGTCTGATGGATGAGAAAGATGTTAAGGGCTTTATAACAAGGGAAGAATTTGAGAATCTTGCATCTGGATTATTGGAGAGAATTTCAGTACCTTGCAACGAAGCATTAATTGAAGCAGGCTTGAATGCAGAGAAGATTTCTTCTGTGGAGCTAGTTGGTTCAGGTTCTAGGATTCCAGCAGTGAGTACATTATTATCTTCTTTATTCAAGAGAGAACCGAGCCGAAAGTTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCTATGCTCAGTCCCACATACCGTGTGCGAGAATACGAGGTCCAGGATATTAGTCCTTTTTCATATGGACTTCAATCAGATAAAGTTCGAATTTCTGATAGACCAGATGGTGTACTTTTCCCAAAAGGCCATCCCATTCCAAGTACTGTGGTCTTCCCATCCAAGCCAACTGATTTGTCCCATTTGGAAGCTTTCTACGCAAATGAACATGAACTACCACCTGGAACGTTTCCAAAAATTAGTTCCTTCACGATCGGTCCTATGCATGGATCTCAAGGTAGTAAGGAAAAAGTTAAAGTTCGAGTTCAACTAAATCTGCATGGCATTTTCAGTATTGATTCAGCTACATTGATCAAGGATCACACGGATGATCATCATTCAAATTTTGATGCAATGGATGTCGATCCTAAGTCCGAGACCTCAGATAGTACCAATTCTGTTGCCAATGGCGCTGAAGATAGTACCAATAAGCGTGATTCTCCACCAAGTTATGCAGATTGTCTAAGAAAAGATAAGGCGAACAGAAGGATTCCTATTGCAGTGAATGAGAATTTCTATGGTGGAATGACAATGGAAGAGATTTCTGAAGCCCATGAAAAAGAACTCCAGTTAGCTCAACAGGACAGAGCTGTGGAGCTAACCAAAGAAAAGAAGAACACCTTGGAGTCCTATGTCTATGAGACGAGAAGTAAGCTCTTCAACACATATCGGAGCTTTGCTAGTGACCAAGAGAGGGATGTCATATCTAGGAGTTTGCAAGAGACTGAGGATTGGCTTTATGAGGACGGTGATGATGAAACTGAACACGCTTATACCTCAAAACTAGAAGATCTGAAAAAGCTGGTGGATCCAATTGAGATTCGGTACAAAGATGATGAAGAAAGAACACAAGCTATAAAAGATTTATCAAAATTCATTTCAGATATTCGCAAGTTTGCAGATTCCGTTCCACCCCAGAAAAAAGAACAGATCATTGATATTAGCAATGAAGCAGAGCATTGGCTAACAGAGAAGGTGCAACAACAAGAATCTTATCCTAAGAATGTCGACCCAATATTATGGTCAAGTCATATTAAGAGCGCAATAGAGGAGCTAAACAGAGGAATGCACAACATAGTGAAATCCAGGACACCTTCAGAAGACGAAGATGACAAAGACAAGCCAGAAGACGAAGATGACAAAGACAAGTTGGATTCTTCCAATCATCCGTGA
Protein sequence

>Msa0453070

MSVVGFDIGNENCVIAVAKHRGIDVLLNDESKRETPAVVCFGEKQRFLGSAGAASAMMHPKSTISQVKRFIGRRFLDPDMEKDLKMLPLETSQGPDGGVLFHLKYLDGIHTFTPVQIMSMLFAHLKTMTEKDLEAPISDCVIGIPSYFTDLQRWAYLDAAIIAGLKPLRLIHDCTATALSYGIYKTNFQSDGPSYVAFIDIGQCDTQVCIAAFEFGQMRILSHAFDRSLGGRDFDEVLFTHFAEKFKEQYKIDVYSNAKACIRLRAACEKLKKVLSANPEAPLNIECLMDEKDVKGFITREEFENLASGLLERISVPCNEALIEAGLNAEKISSVELVGSGSRIPAVSTLLSSLFKREPSRKLNASECVARGCALQCAMLSPTYRVREYEVQDISPFSYGLQSDKVRISDRPDGVLFPKGHPIPSTVVFPSKPTDLSHLEAFYANEHELPPGTFPKISSFTIGPMHGSQGSKEKVKVRVQLNLHGIFSIDSATLIKDHTDDHHSNFDAMDVDPKSETSDSTNSVANGAEDSTNKRDSPPSYADCLRKDKANRRIPIAVNENFYGGMTMEEISEAHEKELQLAQQDRAVELTKEKKNTLESYVYETRSKLFNTYRSFASDQERDVISRSLQETEDWLYEDGDDETEHAYTSKLEDLKKLVDPIEIRYKDDEERTQAIKDLSKFISDIRKFADSVPPQKKEQIIDISNEAEHWLTEKVQQQESYPKNVDPILWSSHIKSAIEELNRGMHNIVKSRTPSEDEDDKDKPEDEDDKDKLDSSNHP*