AlfalfaGEDB | Msa1265280

M. sativa cultivar zhongmu-4 / Msa1265280

KEGG: -
GO: -
PFAM: PF07887.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1265280	XP_003610155.1	94.497	636	6	2	1	607	1	636	0.0	1219

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1265280	sp\|Q9FKL6\|CB60B_ARATH	66.294	626	175	7	12	602	12	636	0.0	824

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1265280	G7JD14	94.497	636	6	2	1	607	1	636	0.0	1219

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000910	Msa1265280	0.812696	3.722919e-51	-8.615850e-47
Msa0007440	Msa1265280	0.817457	3.265542e-52	-8.615850e-47
Msa0007990	Msa1265280	0.803391	3.564371e-49	-8.615850e-47
Msa0008220	Msa1265280	0.802755	4.825620e-49	-8.615850e-47
Msa0010490	Msa1265280	0.800121	1.672302e-48	-8.615850e-47
Msa0012710	Msa1265280	0.834305	3.237379e-56	-8.615850e-47
Msa0017320	Msa1265280	0.855881	4.685569e-62	-8.615850e-47
Msa0017390	Msa1265280	0.803400	3.549711e-49	-8.615850e-47
Msa0020390	Msa1265280	0.802614	5.161044e-49	-8.615850e-47
Msa0022550	Msa1265280	0.802078	6.654301e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1265280	MtrunA17_Chr4g0072691	94.050	605	8	1	31	607	2	606	0.0	1158
Msa1265280	MtrunA17_Chr2g0281171	63.091	634	179	9	13	607	16	633	0.0	787
Msa1265280	MtrunA17_Chr4g0048161	62.758	631	182	8	13	607	15	628	0.0	784
Msa1265280	MtrunA17_Chr2g0304831	56.197	589	223	12	28	606	30	593	0.0	623
Msa1265280	MtrunA17_Chr6g0484131	47.301	389	186	8	13	387	4	387	2.02e-117	358
Msa1265280	MtrunA17_Chr6g0484121	47.815	389	184	8	13	387	4	387	1.66e-115	353
Msa1265280	MtrunA17_Chr6g0484111	41.379	493	257	11	13	488	4	481	6.21e-115	352
Msa1265280	MtrunA17_Chr8g0391221	48.670	376	179	7	21	386	13	384	3.27e-113	347
Msa1265280	MtrunA17_Chr8g0391211	46.907	388	187	8	12	386	74	455	2.86e-110	342
Msa1265280	MtrunA17_Chr4g0059411	40.764	471	250	8	15	461	2	467	1.60e-103	324

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1265280	AT5G57580.1	66.294	626	175	7	12	602	12	636	0.0	824
Msa1265280	AT2G18750.3	65.604	596	186	6	25	607	30	619	0.0	783
Msa1265280	AT2G18750.2	65.604	596	186	6	25	607	30	619	0.0	783
Msa1265280	AT2G18750.1	65.604	596	186	6	25	607	30	619	0.0	783
Msa1265280	AT4G25800.1	64.167	600	186	10	21	605	9	594	0.0	748
Msa1265280	AT4G25800.2	64.167	600	186	10	21	605	9	594	0.0	748
Msa1265280	AT2G24300.3	53.686	624	240	14	9	606	3	603	0.0	600
Msa1265280	AT2G24300.2	53.698	622	239	14	11	606	1	599	0.0	599
Msa1265280	AT2G24300.1	52.817	568	224	12	60	606	8	552	0.0	540
Msa1265280	AT4G31000.1	63.807	373	127	3	22	390	18	386	1.80e-171	499

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Find 214 sgRNAs with CRISPR-Local

Find 456 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATTGAAGGTCCTGA+TGG	0.591187	8_2:+69471560	Msa1265280:CDS
AAAAGGGCCCTTGAGGGTGG+TGG	0.392097	8_2:+69469034	Msa1265280:CDS
AAAAGTGGAAGGCGAGCAGG+GGG	0.583445	8_2:+69471640	Msa1265280:CDS
AAAGAGACCTTTGTTGAACG+GGG	0.691944	8_2:+69471835	Msa1265280:CDS
AAAGATAACTTAGCAGTGTT+TGG	0.386742	8_2:-69468531	None:intergenic
AAAGATAGCAGCTGAGAAGC+GGG	0.505005	8_2:+69474244	Msa1265280:CDS
AACAAATGGAAAGGTGATAG+AGG	0.484106	8_2:-69474531	None:intergenic
AACAGAAAGCCGGAAAGTGA+CGG	0.556818	8_2:-69468582	None:intergenic
AACAGTAAAAGCCACTGTCT+TGG	0.483889	8_2:-69472002	None:intergenic
AACCAAGAATGTTGATACCA+TGG	0.601047	8_2:-69474395	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAATCGATTATGGGTAA+TGG	-	chr8_2:69468465-69468484	None:intergenic	30.0%
AAAGATAACTTAGCAGTGTT+TGG	-	chr8_2:69468534-69468553	None:intergenic	30.0%
AAGGAAAAATAACAGAAAGC+CGG	-	chr8_2:69468595-69468614	None:intergenic	30.0%
GTAAAAGAAACGAAGTGTAA+CGG	-	chr8_2:69468664-69468683	None:intergenic	30.0%
CAATACCAAGATTGTTAAGT+TGG	+	chr8_2:69469263-69469282	Msa1265280:intron	30.0%
AATGTCCAACTTAACAATCT+TGG	-	chr8_2:69469271-69469290	None:intergenic	30.0%
AATTGACAACTGACAACAAA+AGG	-	chr8_2:69469475-69469494	None:intergenic	30.0%
ATATCAGAAAGAATCTTCCT+AGG	-	chr8_2:69469616-69469635	None:intergenic	30.0%
GAAAACAAATAGCAGAAATC+AGG	-	chr8_2:69470010-69470029	None:intergenic	30.0%
ACTGTGTTAAGTGTTAACTA+TGG	+	chr8_2:69470730-69470749	Msa1265280:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	69468304	69474729	69468304	ID=Msa1265280;Name=Msa1265280
chr8_2	mRNA	69468304	69474729	69468304	ID=Msa1265280-mRNA-1;Parent=Msa1265280;Name=Msa1265280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=461\|0.87\|0.88\|1\|0.87\|0.88\|9\|437\|607
chr8_2	exon	69468304	69468740	69468304	ID=Msa1265280-mRNA-1:exon:22929;Parent=Msa1265280-mRNA-1
chr8_2	exon	69468974	69469098	69468974	ID=Msa1265280-mRNA-1:exon:22930;Parent=Msa1265280-mRNA-1
chr8_2	exon	69469913	69469988	69469913	ID=Msa1265280-mRNA-1:exon:22931;Parent=Msa1265280-mRNA-1
chr8_2	exon	69470521	69470579	69470521	ID=Msa1265280-mRNA-1:exon:22932;Parent=Msa1265280-mRNA-1
chr8_2	exon	69471550	69472043	69471550	ID=Msa1265280-mRNA-1:exon:22933;Parent=Msa1265280-mRNA-1
chr8_2	exon	69472143	69472303	69472143	ID=Msa1265280-mRNA-1:exon:22934;Parent=Msa1265280-mRNA-1
chr8_2	exon	69472379	69472582	69472379	ID=Msa1265280-mRNA-1:exon:22935;Parent=Msa1265280-mRNA-1
chr8_2	exon	69472842	69472992	69472842	ID=Msa1265280-mRNA-1:exon:22936;Parent=Msa1265280-mRNA-1
chr8_2	exon	69473715	69474729	69473715	ID=Msa1265280-mRNA-1:exon:22937;Parent=Msa1265280-mRNA-1
chr8_2	five_prime_UTR	69468304	69468740	69468304	ID=Msa1265280-mRNA-1:five_prime_utr;Parent=Msa1265280-mRNA-1
chr8_2	five_prime_UTR	69468974	69468997	69468974	ID=Msa1265280-mRNA-1:five_prime_utr;Parent=Msa1265280-mRNA-1
chr8_2	CDS	69468998	69469098	69468998	ID=Msa1265280-mRNA-1:cds;Parent=Msa1265280-mRNA-1
chr8_2	CDS	69469913	69469988	69469913	ID=Msa1265280-mRNA-1:cds;Parent=Msa1265280-mRNA-1
chr8_2	CDS	69470521	69470579	69470521	ID=Msa1265280-mRNA-1:cds;Parent=Msa1265280-mRNA-1
chr8_2	CDS	69471550	69472043	69471550	ID=Msa1265280-mRNA-1:cds;Parent=Msa1265280-mRNA-1
chr8_2	CDS	69472143	69472303	69472143	ID=Msa1265280-mRNA-1:cds;Parent=Msa1265280-mRNA-1
chr8_2	CDS	69472379	69472582	69472379	ID=Msa1265280-mRNA-1:cds;Parent=Msa1265280-mRNA-1
chr8_2	CDS	69472842	69472992	69472842	ID=Msa1265280-mRNA-1:cds;Parent=Msa1265280-mRNA-1
chr8_2	CDS	69473715	69474292	69473715	ID=Msa1265280-mRNA-1:cds;Parent=Msa1265280-mRNA-1
chr8_2	three_prime_UTR	69474293	69474729	69474293	ID=Msa1265280-mRNA-1:three_prime_utr;Parent=Msa1265280-mRNA-1

Gene Sequence

>Msa1265280

ATGCAGAGACCACCTACCGACGGAGCAAGTATGGGGAAAAGGGCCCTTGAGGGTGGTGGAGATGATGATCAGCCTGAACGAAAGAGGCCTGCTCTTGCTAGTGTAATTGTTGAAGCTCTCAAGGTGGACAGTTTGCAGAAGCTTTGCTCATCTTTAGAACCTATTCTTCGTAGAGTTGTGAGTGAAGAAGTGGAGCGTGCTTTGGCGAAGTTAGGTCCTGCAAGACTTAGTGGAAGGTCTTCCCCTAAAAGGATTGAAGGTCCTGATGGTAGAAACTTGCGGCTTCAATTTAGGTCCCGACTGGCTCTTCCTCTATTCACAGGAGGAAAAGTGGAAGGCGAGCAGGGGGCTCCAATTCATGTTGTTCTGGTTGATTCCAACAGTGGAAGTGTGGTAACATCTGGACCTGAATCATGTATAAAACTCGATGTCGTTGTCCTTGAAGGCGATTTTAACAATGAAGATGATGAAGATTGGAGCCAAGAGGAATTTGAAAGCCATGTGGTGAAAGAACGCCAAGGAAAGAGACCTTTGTTGAACGGGGAACTGCAAGTGACACTCAAGGAGGGAGTTGGAACATTAGGGGAACTGATATTTACAGACAATTCAAGCTGGATAAGAAGCCGTAAATTCAGGCTTGGAATGAAGGTTGCATCTGGTTTTGGCGAGTCTATACGCATTCGTGAAGCCAAGACAGTGGCTTTTACTGTTAAAGATCATAGAGGAGAATTGTATAAGAAGCATTATCCTCCTGCATTGGGTGATGATGTATGGAGATTGGAGAAAATAGGTAAGGATGGGTCATTTCACAAAAAGTTGAATAATGCTGGAATATTCACCGTTGAAGACTTTCTTCGACTTGTGGTTAAGGATCAACAGAAATTGCGGAATATCCTTGGGAGCGGTATGTCAAACAAGATGTGGGAAGCTCTCTTAGACCATGCAAAGACATGTGTTCTAAGCGGGAAGCTTTATGTTTATTATCCAGAAGATACAAGAAATGTTGGTGTTATTTTTAACCACGTCTATGAGCTGCGTGGCCTTATAACAGGAGAGCAATTCTTTTCTGCTGATTCTCTTAGCGATAATCAGAAGGTGTACGTAGATTCATTGGTGAAAAAGGCATACGACAATTGGGAGCAGGTTGTAGAGTACGATGGCAAATCACTTGTGGATGCTGAGCAAAATAACAACACTGTTGAATCTGAAAATGAACTTCATGTGGAGTCAATTGATTATGATGGCGGTTTTAACAATAGCATGGTGACGAGGTATCCAAGCCAGGCCTTGATTGGAAATTCCAGCTCTCGGAGTCATTTTGATGACTCGTTATATCTGTCTAACGACCATTTATTAGGCAATGCTCACCAATCCCAAAGCTCTAGAAATGATCATAGCACAGTAGGGTTGGCTCTTGGTCCTTCTCAATCATCAACTTCAGGTTTCCATGCTGCTAGCTCTTCCATGCAACCACCTGCCCCAAATCCTTTTGATGATTGGTCAAACAACAGGGACAAGGGTGTTGATGACTTCTTTTCAGAGGATGAAATCCGCGTTAGAAGTAATGAGATACTAGAGAATGAAGACATGCAGCACTTGCTTCGCCTTTTCAGCATGGGAGGTCATCCTTCCATGAATACTGAGGATGGTTATTCATTCCCATCATTCATGCCATCTCCTATGCCGAACTTCGATGAGGATCGCTCTCGTCCTGGCAAAGCTGTTGTGGGATGGCTGAAGATCAAGGCAGCAATGAGGTGGGGCTTCTTTATCAGAAAGATAGCAGCTGAGAAGCGGGCTCAGATAGAGGAGTTAGATGAATAG

Protein sequence

>Msa1265280

MQRPPTDGASMGKRALEGGGDDDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLSGRSSPKRIEGPDGRNLRLQFRSRLALPLFTGGKVEGEQGAPIHVVLVDSNSGSVVTSGPESCIKLDVVVLEGDFNNEDDEDWSQEEFESHVVKERQGKRPLLNGELQVTLKEGVGTLGELIFTDNSSWIRSRKFRLGMKVASGFGESIRIREAKTVAFTVKDHRGELYKKHYPPALGDDVWRLEKIGKDGSFHKKLNNAGIFTVEDFLRLVVKDQQKLRNILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDTRNVGVIFNHVYELRGLITGEQFFSADSLSDNQKVYVDSLVKKAYDNWEQVVEYDGKSLVDAEQNNNTVESENELHVESIDYDGGFNNSMVTRYPSQALIGNSSSRSHFDDSLYLSNDHLLGNAHQSQSSRNDHSTVGLALGPSQSSTSGFHAASSSMQPPAPNPFDDWSNNRDKGVDDFFSEDEIRVRSNEILENEDMQHLLRLFSMGGHPSMNTEDGYSFPSFMPSPMPNFDEDRSRPGKAVVGWLKIKAAMRWGFFIRKIAAEKRAQIEELDE*