AlfalfaGEDB | Msa0569800

M. sativa cultivar zhongmu-4 / Msa0569800

KEGG: K00889
GO: -
PFAM: PF02493.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569800	RHN43201.1	65.291	412	46	5	1	315	7	418	4.67e-156	454

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569800	sp\|Q8RY89\|PI5K8_ARATH	35.312	337	161	6	2	300	9	326	3.85e-42	158

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569800	A0A396GSR0	65.291	412	46	5	1	315	7	418	2.23e-156	454

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017320	Msa0569800	0.816406	5.621140e-52	-8.615850e-47
Msa0055070	Msa0569800	0.821106	4.816139e-53	-8.615850e-47
Msa0070170	Msa0569800	0.807770	4.297906e-50	-8.615850e-47
Msa0077900	Msa0569800	0.806115	9.621870e-50	-8.615850e-47
Msa0095360	Msa0569800	0.823863	1.101542e-53	-8.615850e-47
Msa0095770	Msa0569800	0.819846	9.372810e-53	-8.615850e-47
Msa0101020	Msa0569800	0.821313	4.315932e-53	-8.615850e-47
Msa0145110	Msa0569800	0.821878	3.195195e-53	-8.615850e-47
Msa0154920	Msa0569800	0.800647	1.306445e-48	-8.615850e-47
Msa0160670	Msa0569800	0.803100	4.094645e-49	-8.615850e-47
Msa0439890	Msa0569800	0.815790	7.717171e-52	-8.615850e-47
Msa0443430	Msa0569800	0.817399	3.364891e-52	-8.615850e-47
Msa0453070	Msa0569800	0.807628	4.607019e-50	-8.615850e-47
Msa0247060	Msa0569800	0.803331	3.668865e-49	-8.615850e-47
Msa0271790	Msa0569800	0.806102	9.682076e-50	-8.615850e-47
Msa0310430	Msa0569800	0.806038	9.985621e-50	-8.615850e-47
Msa0324240	Msa0569800	0.807199	5.681062e-50	-8.615850e-47
Msa0489660	Msa0569800	0.824838	6.496538e-54	-8.615850e-47
Msa0514610	Msa0569800	0.804841	1.780205e-49	-8.615850e-47
Msa0567240	Msa0569800	0.800592	1.340890e-48	-8.615850e-47
Msa0569800	Msa0585650	-0.819008	1.455156e-52	-8.615850e-47
Msa0569800	Msa0616450	0.807998	3.843639e-50	-8.615850e-47
Msa0569800	Msa0620330	0.802698	4.958115e-49	-8.615850e-47
Msa0569800	Msa0716970	0.814884	1.227264e-51	-8.615850e-47
Msa0569800	Msa0743530	0.809521	1.816490e-50	-8.615850e-47
Msa0569800	Msa0746170	0.808780	2.617841e-50	-8.615850e-47
Msa0569800	Msa0746210	0.802439	5.607861e-49	-8.615850e-47
Msa0569800	Msa0774750	0.814967	1.176588e-51	-8.615850e-47
Msa0569800	Msa0776750	0.812120	4.974501e-51	-8.615850e-47
Msa0569800	Msa0777320	0.802688	4.983086e-49	-8.615850e-47
Msa0569800	Msa0781020	0.801712	7.912833e-49	-8.615850e-47
Msa0569800	Msa0822170	0.818010	2.449357e-52	-8.615850e-47
Msa0569800	Msa0847470	0.809552	1.788385e-50	-8.615850e-47
Msa0569800	Msa0870650	0.809460	1.871992e-50	-8.615850e-47
Msa0569800	Msa0905750	0.806475	8.077497e-50	-8.615850e-47
Msa0569800	Msa0957970	0.800432	1.445194e-48	-8.615850e-47
Msa0569800	Msa0965020	0.801874	7.328851e-49	-8.615850e-47
Msa0569800	Msa0973320	0.824383	8.315848e-54	-8.615850e-47
Msa0569800	Msa1098890	0.808888	2.481568e-50	-8.615850e-47
Msa0569800	Msa1122780	0.804707	1.897981e-49	-8.615850e-47
Msa0569800	Msa1127430	0.808201	3.478758e-50	-8.615850e-47
Msa0569800	Msa1168550	0.804742	1.866534e-49	-8.615850e-47
Msa0569800	Msa1168590	0.810302	1.232939e-50	-8.615850e-47
Msa0569800	Msa1197070	0.809598	1.748321e-50	-8.615850e-47
Msa0569800	Msa1199710	0.819636	1.046637e-52	-8.615850e-47
Msa0569800	Msa1211350	0.811287	7.549262e-51	-8.615850e-47
Msa0569800	Msa1329800	0.817061	4.009704e-52	-8.615850e-47
Msa0569800	Msa1336040	0.809238	2.088566e-50	-8.615850e-47
Msa0569800	Msa1372290	0.805765	1.139560e-49	-8.615850e-47
Msa0569800	Msa1416260	0.804006	2.657292e-49	-8.615850e-47
Msa0569800	Msa1437210	0.806073	9.819228e-50	-8.615850e-47
Msa0569800	Msa1446080	0.800756	1.241371e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569800	MtrunA17_Chr8g0385241	65.291	412	46	5	1	315	7	418	4.30e-160	454
Msa0569800	MtrunA17_Chr8g0382971	61.905	336	90	6	1	315	22	340	1.26e-125	363
Msa0569800	MtrunA17_Chr8g0383551	58.407	339	106	6	2	315	26	354	1.21e-116	341
Msa0569800	MtrunA17_Chr4g0059911	54.194	310	103	7	8	292	13	308	1.29e-98	295
Msa0569800	MtrunA17_Chr4g0059911	39.873	158	79	1	1	142	76	233	4.02e-26	106
Msa0569800	MtrunA17_Chr8g0377671	52.846	246	96	3	3	236	19	256	3.64e-70	219
Msa0569800	MtrunA17_Chr8g0377671	47.907	215	92	3	1	203	63	269	1.65e-54	179
Msa0569800	MtrunA17_Chr8g0377671	45.946	148	67	2	101	236	18	164	1.78e-28	111
Msa0569800	MtrunA17_Chr8g0383331	73.154	149	27	2	100	236	1	148	1.85e-69	213
Msa0569800	MtrunA17_Chr8g0383331	46.452	155	63	3	50	192	4	150	1.90e-32	118
Msa0569800	MtrunA17_Chr8g0383331	41.818	165	88	2	1	165	1	157	8.42e-32	116
Msa0569800	MtrunA17_Chr8g0380791	40.413	339	158	10	3	315	12	332	2.07e-58	200
Msa0569800	MtrunA17_Chr8g0377191	53.535	198	72	3	8	193	16	205	5.93e-54	175
Msa0569800	MtrunA17_Chr8g0377191	51.397	179	67	3	51	217	13	183	3.34e-47	158
Msa0569800	MtrunA17_Chr8g0377191	47.436	156	74	2	1	156	55	202	3.05e-32	119
Msa0569800	MtrunA17_Chr8g0377191	46.897	145	64	2	104	236	13	156	2.02e-30	114
Msa0569800	MtrunA17_Chr2g0316611	34.091	308	128	4	3	236	35	341	6.79e-44	154
Msa0569800	MtrunA17_Chr2g0316611	28.720	289	118	5	4	223	105	374	4.69e-19	86.7
Msa0569800	MtrunA17_Chr6g0467061	37.600	250	128	3	3	236	18	255	4.17e-41	146
Msa0569800	MtrunA17_Chr6g0467061	47.899	119	55	1	1	119	223	334	5.58e-23	97.4
Msa0569800	MtrunA17_Chr6g0467061	36.022	186	91	3	1	170	154	327	8.66e-23	96.7
Msa0569800	MtrunA17_Chr6g0467061	30.303	231	95	4	1	196	131	330	1.93e-18	84.7
Msa0569800	MtrunA17_Chr2g0316631	36.800	250	130	3	3	236	35	272	8.28e-41	144
Msa0569800	MtrunA17_Chr2g0316631	36.818	220	120	3	4	223	105	305	3.05e-33	124
Msa0569800	MtrunA17_Chr8g0377211	45.714	175	53	3	7	181	22	154	2.41e-37	131
Msa0569800	MtrunA17_Chr8g0377211	53.846	130	48	2	107	236	23	140	7.34e-35	125
Msa0569800	MtrunA17_Chr8g0377211	48.120	133	56	2	83	203	22	153	7.76e-29	109
Msa0569800	MtrunA17_Chr8g0377221	34.632	231	113	6	1	214	2	211	1.86e-31	119
Msa0569800	MtrunA17_Chr8g0377221	42.667	150	64	3	8	142	78	220	2.65e-24	99.8
Msa0569800	MtrunA17_Chr1g0171491	31.799	239	121	3	9	247	66	262	3.82e-27	112
Msa0569800	MtrunA17_Chr1g0180261	31.006	358	159	12	9	310	56	381	6.16e-27	111
Msa0569800	MtrunA17_Chr1g0180261	33.708	178	98	3	50	215	51	220	5.08e-23	99.8
Msa0569800	MtrunA17_Chr8g0353121	35.294	204	113	3	9	212	58	242	7.17e-26	108
Msa0569800	MtrunA17_Chr8g0353121	31.088	193	113	3	52	232	55	239	2.75e-20	91.7
Msa0569800	MtrunA17_Chr8g0353121	33.871	186	104	3	2	187	74	240	5.38e-19	87.8
Msa0569800	MtrunA17_Chr8g0353121	34.028	144	82	2	105	236	55	197	1.28e-14	74.7
Msa0569800	MtrunA17_Chr7g0256301	33.484	221	99	5	2	216	63	241	6.22e-25	105
Msa0569800	MtrunA17_Chr7g0256301	29.891	184	110	3	52	235	73	237	3.93e-14	73.2
Msa0569800	MtrunA17_Chr5g0424111	37.824	193	95	4	40	214	180	365	6.50e-25	104
Msa0569800	MtrunA17_Chr5g0424111	34.091	132	80	1	9	140	248	372	2.00e-13	70.5
Msa0569800	MtrunA17_Chr5g0424111	32.143	168	95	2	3	170	219	367	5.33e-13	69.3
Msa0569800	MtrunA17_Chr5g0424111	38.889	108	59	1	8	115	270	370	1.05e-12	68.6
Msa0569800	MtrunA17_Chr3g0082501	35.784	204	111	4	9	212	69	252	1.04e-24	104
Msa0569800	MtrunA17_Chr3g0082501	30.570	193	114	3	50	230	64	248	3.86e-20	91.3
Msa0569800	MtrunA17_Chr3g0082501	32.639	144	84	2	105	236	66	208	2.23e-13	70.9
Msa0569800	MtrunA17_Chr5g0398011	48.760	121	54	2	2	121	32	145	1.92e-24	97.1
Msa0569800	MtrunA17_Chr5g0398011	37.838	111	57	2	126	236	35	133	7.12e-13	65.5
Msa0569800	MtrunA17_Chr5g0398011	67.442	43	14	0	8	50	108	150	4.30e-11	60.5
Msa0569800	MtrunA17_Chr7g0233351	35.165	182	98	4	52	221	194	367	3.42e-23	99.4
Msa0569800	MtrunA17_Chr7g0233351	31.937	191	111	2	8	198	196	367	8.48e-21	92.4
Msa0569800	MtrunA17_Chr7g0233351	32.759	174	98	3	3	176	214	368	3.24e-13	70.1
Msa0569800	MtrunA17_Chr5g0424301	32.836	201	93	4	9	209	74	232	7.86e-23	99.4
Msa0569800	MtrunA17_Chr5g0424301	33.588	131	75	2	105	235	71	189	1.44e-11	65.5
Msa0569800	MtrunA17_Chr8g0385201	30.126	239	120	6	18	256	45	236	1.12e-22	98.6
Msa0569800	MtrunA17_Chr8g0385201	38.816	152	85	2	2	153	52	195	3.33e-20	91.3
Msa0569800	MtrunA17_Chr8g0336161	34.807	181	100	3	52	221	199	372	5.23e-22	95.9
Msa0569800	MtrunA17_Chr8g0336161	32.487	197	114	2	2	198	195	372	1.28e-19	89.0
Msa0569800	MtrunA17_Chr8g0336161	31.579	133	84	1	9	141	248	373	5.16e-15	75.5
Msa0569800	MtrunA17_Chr8g0336161	32.386	176	100	3	79	247	196	359	6.75e-14	72.0
Msa0569800	MtrunA17_Chr4g0055371	34.225	187	102	5	52	226	174	351	2.60e-21	93.6
Msa0569800	MtrunA17_Chr4g0055371	29.798	198	120	2	1	198	169	347	1.74e-18	85.5
Msa0569800	MtrunA17_Chr4g0055371	31.250	176	101	3	91	247	160	334	6.70e-15	75.1
Msa0569800	MtrunA17_Chr4g0055371	30.882	136	87	1	9	144	223	351	8.59e-14	71.6
Msa0569800	MtrunA17_Chr3g0131001	33.654	208	96	4	8	215	59	224	6.65e-21	93.6
Msa0569800	MtrunA17_Chr8g0377201	69.643	56	17	0	181	236	1	56	2.83e-20	84.0
Msa0569800	MtrunA17_Chr8g0377201	57.895	57	23	1	100	156	1	56	3.58e-13	64.3
Msa0569800	MtrunA17_Chr3g0115111	31.414	191	105	5	50	222	57	239	2.41e-19	89.0
Msa0569800	MtrunA17_Chr3g0115111	36.601	153	89	2	3	155	80	224	6.89e-19	87.4
Msa0569800	MtrunA17_Chr3g0115111	29.762	168	105	3	70	236	47	202	2.84e-12	67.4
Msa0569800	MtrunA17_Chr3g0114791	33.333	186	104	3	41	214	176	353	1.29e-18	85.9
Msa0569800	MtrunA17_Chr3g0114791	29.744	195	118	2	2	196	183	358	1.84e-15	76.6
Msa0569800	MtrunA17_Chr3g0085921	62.295	61	22	1	95	155	2	61	6.36e-16	72.8
Msa0569800	MtrunA17_Chr3g0085921	58.333	60	13	1	142	189	2	61	1.61e-13	66.2
Msa0569800	MtrunA17_Chr5g0398021	36.029	136	57	1	4	139	13	118	6.40e-16	73.9
Msa0569800	MtrunA17_Chr5g0398021	32.231	121	70	2	118	238	5	113	4.39e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0569800	AT1G60890.1	35.312	337	161	6	2	300	9	326	3.91e-43	158
Msa0569800	AT1G60890.2	35.312	337	161	6	2	300	21	338	5.35e-43	158
Msa0569800	AT1G10900.2	35.514	321	161	8	9	303	16	316	1.86e-38	145
Msa0569800	AT1G10900.1	35.514	321	161	8	9	303	16	316	1.86e-38	145
Msa0569800	AT1G10900.3	35.514	321	161	8	9	303	16	316	1.86e-38	145
Msa0569800	AT3G07960.1	34.222	225	106	4	9	233	32	214	7.38e-28	114
Msa0569800	AT3G07960.1	35.393	178	96	3	2	179	48	206	3.23e-22	97.8
Msa0569800	AT3G07960.1	33.793	145	83	2	104	236	28	171	1.16e-15	78.2
Msa0569800	AT3G09920.3	29.722	360	180	9	1	313	50	383	1.17e-27	114
Msa0569800	AT3G09920.4	29.722	360	180	9	1	313	50	383	1.17e-27	114
Msa0569800	AT3G09920.2	29.722	360	180	9	1	313	50	383	1.17e-27	114
Msa0569800	AT3G09920.1	29.722	360	180	9	1	313	50	383	1.17e-27	114
Msa0569800	AT3G07960.3	33.778	225	107	4	9	233	32	214	1.23e-27	113
Msa0569800	AT3G07960.3	35.196	179	97	3	2	180	48	207	2.00e-22	98.2
Msa0569800	AT3G07960.3	33.793	145	83	2	104	236	28	171	5.71e-16	79.0
Msa0569800	AT3G07960.2	33.778	225	107	4	9	233	32	214	1.38e-27	113
Msa0569800	AT3G07960.2	35.196	179	97	3	2	180	48	207	2.25e-22	98.2
Msa0569800	AT3G07960.2	33.793	145	83	2	104	236	28	171	6.01e-16	79.0
Msa0569800	AT3G07960.4	33.778	225	107	4	9	233	32	214	1.38e-27	113
Msa0569800	AT3G07960.4	35.196	179	97	3	2	180	48	207	2.25e-22	98.2
Msa0569800	AT3G07960.4	33.793	145	83	2	104	236	28	171	6.01e-16	79.0
Msa0569800	AT3G56960.2	32.432	222	108	3	9	230	77	256	1.55e-27	113
Msa0569800	AT3G56960.2	35.878	131	72	2	105	235	74	192	2.36e-14	74.3
Msa0569800	AT3G56960.1	32.432	222	108	3	9	230	77	256	1.55e-27	113
Msa0569800	AT3G56960.1	35.878	131	72	2	105	235	74	192	2.36e-14	74.3
Msa0569800	AT2G41210.1	36.453	203	100	5	9	190	75	269	8.63e-26	108
Msa0569800	AT2G41210.1	30.319	188	112	3	48	235	68	236	9.07e-16	78.6
Msa0569800	AT2G41210.1	30.556	144	87	2	105	236	72	214	2.54e-12	68.2
Msa0569800	AT2G26420.1	36.735	196	82	4	8	203	57	210	1.39e-24	104
Msa0569800	AT2G26420.1	38.168	131	69	2	105	235	55	173	7.02e-15	75.9
Msa0569800	AT2G26420.2	36.735	196	82	4	8	203	57	210	1.75e-24	104
Msa0569800	AT2G26420.2	38.168	131	69	2	105	235	55	173	8.99e-15	75.5
Msa0569800	AT2G26420.3	36.735	196	82	4	8	203	57	210	1.75e-24	104
Msa0569800	AT2G26420.3	38.168	131	69	2	105	235	55	173	8.99e-15	75.5
Msa0569800	AT1G21980.1	33.654	208	119	3	8	215	80	268	3.00e-24	103
Msa0569800	AT1G21980.1	34.225	187	103	5	2	176	97	275	1.57e-19	89.7
Msa0569800	AT1G21980.1	31.073	177	102	3	50	214	76	244	6.05e-19	88.2
Msa0569800	AT1G21980.1	32.099	162	97	2	84	233	80	240	1.35e-13	72.0
Msa0569800	AT1G77740.2	32.212	208	99	3	8	215	81	246	1.45e-23	101
Msa0569800	AT1G77740.2	30.978	184	108	3	50	233	77	241	1.73e-16	80.9
Msa0569800	AT1G77740.2	35.115	131	73	2	105	235	79	197	8.07e-13	69.7
Msa0569800	AT1G77740.1	32.212	208	99	3	8	215	81	246	1.45e-23	101
Msa0569800	AT1G77740.1	30.978	184	108	3	50	233	77	241	1.73e-16	80.9
Msa0569800	AT1G77740.1	35.115	131	73	2	105	235	79	197	8.07e-13	69.7
Msa0569800	AT2G35170.1	33.803	213	116	6	23	221	200	401	8.61e-22	95.9
Msa0569800	AT2G35170.1	32.576	132	82	1	9	140	277	401	3.02e-15	76.6
Msa0569800	AT2G35170.1	37.615	109	61	1	8	116	299	400	8.41e-11	63.2
Msa0569800	AT4G17080.1	33.824	204	109	6	26	215	235	426	6.61e-21	93.6
Msa0569800	AT4G17080.1	31.285	179	103	3	88	247	242	419	7.98e-15	75.5
Msa0569800	AT4G17080.1	29.323	133	87	1	9	141	308	433	2.44e-13	70.9
Msa0569800	AT4G17080.1	32.237	152	95	2	3	154	279	422	9.06e-11	63.2
Msa0569800	AT1G21920.2	34.031	191	104	4	44	221	168	349	3.42e-20	90.5
Msa0569800	AT1G21920.2	31.313	198	117	2	1	198	171	349	1.19e-17	83.2
Msa0569800	AT1G21920.1	34.031	191	104	4	44	221	168	349	4.19e-20	90.5
Msa0569800	AT1G21920.1	31.313	198	117	2	1	198	171	349	1.14e-17	83.6
Msa0569800	AT1G77660.1	33.659	205	109	5	44	230	172	367	6.42e-19	87.0
Msa0569800	AT1G77660.1	31.707	164	93	2	7	170	204	348	6.97e-12	66.2
Msa0569800	AT1G77660.1	38.318	107	59	1	9	115	252	351	4.52e-11	63.9

Find 107 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTATTCTGCAGTTTCAATTT+TGG	0.103432	4_1:-71801429	Msa0569800:three_prime_UTR
CATCCAATGTATTTGAAAAT+TGG	0.184617	4_1:+71801281	None:intergenic
GGTCAAAATTTCTTATAAAA+AGG	0.188608	4_1:+71801302	None:intergenic
TACCTCCATTCTTATAAGTT+TGG	0.224406	4_1:+71803969	None:intergenic
TTGTTTCTTCTAAAATAAAA+AGG	0.241715	4_1:+71801344	None:intergenic
TCCACTGGAAATTGGAAAAC+TGG	0.273252	4_1:-71803569	Msa0569800:CDS
TGGCTGTCTATATCGGAATT+TGG	0.280108	4_1:-71803715	Msa0569800:CDS
ACCTCCATTCTTATAAGTTT+GGG	0.299872	4_1:+71803970	None:intergenic
TATGTGGGTGATTGGGTTTA+TGG	0.303862	4_1:-71804082	Msa0569800:CDS
GGGATGTCTCCACTGGAAAT+TGG	0.304984	4_1:-71803577	Msa0569800:CDS
AAGTATGAGGGTGAATTCTT+TGG	0.311574	4_1:-71804016	Msa0569800:CDS
GGGATGTCTACATCGGAAAT+TGG	0.312785	4_1:-71803436	Msa0569800:CDS
GATACTGGTGATGTCTTCTA+TGG	0.312885	4_1:-71803653	Msa0569800:CDS
CAGAGAAAGGCCTGAAGATA+TGG	0.327525	4_1:-71803190	Msa0569800:CDS
AAATTGGAAAACTGGGAAAA+TGG	0.335598	4_1:-71803561	Msa0569800:CDS
GTTGATGGTGATGTCTTTGA+TGG	0.337843	4_1:-71803374	Msa0569800:CDS
TTCTATGGTTGTTGGTCAAA+TGG	0.344466	4_1:-71803638	Msa0569800:CDS
AATGGACTTGCACATGGATA+TGG	0.345497	4_1:-71803620	Msa0569800:CDS
GGGAAAATGGATGATGGGAG+AGG	0.351706	4_1:-71803548	Msa0569800:CDS
GCAAATGTGGCTGTCTATAT+CGG	0.371248	4_1:-71803722	Msa0569800:CDS
GATGGTACAGGAGATGAAAA+TGG	0.373932	4_1:-71801476	Msa0569800:three_prime_UTR
AATGGACTTATACATGGATA+TGG	0.378270	4_1:-71803341	Msa0569800:CDS
GGAAAATACACACGCTCAAA+TGG	0.381226	4_1:-71803251	Msa0569800:CDS
GCTAACGGGGATGTCGATAT+TGG	0.383760	4_1:-71803305	Msa0569800:CDS
GAGTTTATAGATTTGCAAAT+GGG	0.384860	4_1:-71803457	Msa0569800:CDS
TTTGATGGTTGTTGGTCAAA+TGG	0.395785	4_1:-71803359	Msa0569800:CDS
AAAGACAAAATGGATGGAAC+AGG	0.398399	4_1:-71803410	Msa0569800:CDS
AGTATGAGGGTGAATTCTTT+GGG	0.399117	4_1:-71804015	Msa0569800:CDS
GGCATCTGGTCTGAGCCCTT+TGG	0.402901	4_1:-71803108	Msa0569800:CDS
GTGATGTCTTTGATGGTTGT+TGG	0.407364	4_1:-71803367	Msa0569800:CDS
TCATTGCAGATTTCAAATAA+AGG	0.411270	4_1:-71803140	Msa0569800:CDS
TGGAACAGGGATTATGAGTT+GGG	0.412498	4_1:-71803396	Msa0569800:CDS
GGGATTATGAGTTGGGATAC+TGG	0.413810	4_1:-71803668	Msa0569800:CDS
TTTGAAGGGCCCATATCTTC+AGG	0.413912	4_1:+71803180	None:intergenic
TTATGTGTTACTTCTGAATA+CGG	0.414297	4_1:+71803035	None:intergenic
GGGATTATGAGTTGGGTTGA+TGG	0.425691	4_1:-71803389	Msa0569800:CDS
GATCAATATATGTGGGTGAT+TGG	0.428281	4_1:-71804090	Msa0569800:CDS
TGGATCAGGGATTATGAGTT+GGG	0.431926	4_1:-71803675	Msa0569800:CDS
GTGATGTCTTCTATGGTTGT+TGG	0.434669	4_1:-71803646	Msa0569800:CDS
GGAGTTTATAGATTTGCAAA+TGG	0.437498	4_1:-71803458	Msa0569800:intron
TGAGCCCTTTGGTTATCAAA+AGG	0.442205	4_1:-71803097	Msa0569800:CDS
GAGTTTATAGATATGCTAAC+GGG	0.444349	4_1:-71803319	Msa0569800:CDS
GGGAATTGCCGTCATGGCAT+TGG	0.455461	4_1:-71803995	Msa0569800:CDS
TGGGTTTATGGAGATAAGAC+AGG	0.456332	4_1:-71804070	Msa0569800:CDS
AATGATGAGGGAGGACTAGA+TGG	0.461161	4_1:-71801494	Msa0569800:three_prime_UTR
ATGTCGATATTGGTAACTTC+AGG	0.462222	4_1:-71803295	Msa0569800:CDS
AAAGGTCAGTCTGAGGCATC+TGG	0.469589	4_1:-71803122	Msa0569800:CDS
ATCAATATATGTGGGTGATT+GGG	0.470577	4_1:-71804089	Msa0569800:CDS
ATTTGAAATCTGCAATGAAG+TGG	0.473202	4_1:+71803145	None:intergenic
GAGTTTATAGATCCGCAAAT+GGG	0.476226	4_1:-71803598	Msa0569800:CDS
CCCTCATACTTGTCTCCTGA+TGG	0.482924	4_1:+71804028	None:intergenic
GGAGTTTATAGATCCGCAAA+TGG	0.482951	4_1:-71803599	Msa0569800:CDS
TGCAATGAAGTGGAACCATC+AGG	0.492197	4_1:+71803155	None:intergenic
GAGCCCTTTGGTTATCAAAA+GGG	0.495737	4_1:-71803096	Msa0569800:CDS
ATGGAACAGGGATTATGAGT+TGG	0.497169	4_1:-71803397	Msa0569800:CDS
TTCTTTGGGAATTGCCGTCA+TGG	0.498740	4_1:-71804001	Msa0569800:CDS
AGAGAAAGGCCTGAAGATAT+GGG	0.500116	4_1:-71803189	Msa0569800:CDS
GCCATCAGGAGACAAGTATG+AGG	0.502897	4_1:-71804029	Msa0569800:CDS
TGGTCAAATGGACTTATACA+TGG	0.503975	4_1:-71803347	Msa0569800:CDS
GCAAATGGGGATGTCTCCAC+TGG	0.507526	4_1:-71803584	Msa0569800:CDS
AGTGGAGACATCCCCATTTG+CGG	0.507630	4_1:+71803586	None:intergenic
AAAATGAAAGGGATGGATCA+GGG	0.508482	4_1:-71803688	Msa0569800:CDS
GGCACCCAAACTTATAAGAA+TGG	0.512872	4_1:-71803974	Msa0569800:CDS
AAAACTGGGAAAATGGATGA+TGG	0.517971	4_1:-71803554	Msa0569800:CDS
GGAAAATGGATGATGGGAGA+GGG	0.523308	4_1:-71803547	Msa0569800:CDS
CCACTGGAAATTGGAAAACT+GGG	0.527440	4_1:-71803568	Msa0569800:CDS
ATGGATCAGGGATTATGAGT+TGG	0.528428	4_1:-71803676	Msa0569800:CDS
GAGATGTTGTATTCAGATGA+GGG	0.541647	4_1:-71804178	Msa0569800:CDS
GAGATCATGACGATGCGAAA+TGG	0.542474	4_1:-71801553	Msa0569800:CDS
AACTTGTTACATACTCCCTC+CGG	0.543209	4_1:-71801368	Msa0569800:three_prime_UTR
GATGGACTTGCTCATGGCAA+AGG	0.546265	4_1:-71804133	Msa0569800:CDS
ATAAATACAAATACTAGCAA+TGG	0.547308	4_1:-71801521	Msa0569800:three_prime_UTR
AGAGATGTTGTATTCAGATG+AGG	0.548585	4_1:-71804179	Msa0569800:exon
GAGGGAGGACTAGATGGTAC+AGG	0.551864	4_1:-71801488	Msa0569800:three_prime_UTR
TACATTGGTAACATCAAGGA+TGG	0.556522	4_1:-71804151	Msa0569800:CDS
TGTTTACATTGGTAACATCA+AGG	0.558256	4_1:-71804155	Msa0569800:CDS
TATGGAGATAAGACAGGGAA+AGG	0.560242	4_1:-71804064	Msa0569800:CDS
ATCAAGGATGGACTTGCTCA+TGG	0.560602	4_1:-71804139	Msa0569800:CDS
TCAGATGAGGGTGTTTACAT+TGG	0.560905	4_1:-71804166	Msa0569800:CDS
GTCAAGTGGATCAATATATG+TGG	0.566141	4_1:-71804098	Msa0569800:CDS
AGTTTATAGATTTGCAAATG+GGG	0.568661	4_1:-71803456	Msa0569800:CDS
AAACTGGGAAAATGGATGAT+GGG	0.569491	4_1:-71803553	Msa0569800:CDS
AGCAATGGACATAATGATGA+GGG	0.588310	4_1:-71801506	Msa0569800:three_prime_UTR
ATCAAAAGGGAATATATGCA+AGG	0.589384	4_1:-71803083	Msa0569800:CDS
GGAAAGTACACATGGTCAAG+TGG	0.595598	4_1:-71804112	Msa0569800:CDS
TGGTCAAATGGACTTGCACA+TGG	0.600705	4_1:-71803626	Msa0569800:CDS
AGTAAACTTCTCCATGACAA+TGG	0.603267	4_1:-71803272	Msa0569800:CDS
GGAGTTTATAGATATGCTAA+CGG	0.604064	4_1:-71803320	Msa0569800:CDS
GGACTGTTCATAGAGCCATC+AGG	0.607086	4_1:-71804043	Msa0569800:CDS
TTTGGGTGCCAATGCCATGA+CGG	0.608944	4_1:+71803987	None:intergenic
TGGGCCCTTCAAAATCCTGA+TGG	0.617949	4_1:-71803170	Msa0569800:CDS
CCATCAGGAGACAAGTATGA+GGG	0.619284	4_1:-71804028	Msa0569800:CDS
TTCAAATAAAGGTCAGTCTG+AGG	0.626108	4_1:-71803129	Msa0569800:CDS
AGTTTATAGATCCGCAAATG+GGG	0.634644	4_1:-71803597	Msa0569800:CDS
TAGCAATGGACATAATGATG+AGG	0.640632	4_1:-71801507	Msa0569800:three_prime_UTR
AAGACAAAATGGATGGAACA+GGG	0.643823	4_1:-71803409	Msa0569800:CDS
ACCCAAACTTATAAGAATGG+AGG	0.651940	4_1:-71803971	Msa0569800:intron
GCAAATGGGGATGTCTACAT+CGG	0.652522	4_1:-71803443	Msa0569800:CDS
TATGCAAGGAGTTCTAATTG+TGG	0.655152	4_1:-71803069	Msa0569800:CDS
GGGTTTATGGAGATAAGACA+GGG	0.659085	4_1:-71804069	Msa0569800:CDS
CTCAAATGGAACAATATACG+AGG	0.666370	4_1:-71803237	Msa0569800:CDS
AGTTTATAGATATGCAAATG+TGG	0.684385	4_1:-71803735	Msa0569800:CDS
AATGGACATAATGATGAGGG+AGG	0.689252	4_1:-71801503	Msa0569800:three_prime_UTR
ATGGCAAAGGAAAGTACACA+TGG	0.689912	4_1:-71804120	Msa0569800:CDS
TCAAATGGAACAATATACGA+GGG	0.722465	4_1:-71803236	Msa0569800:intron
TCAAGTGGATCAATATATGT+GGG	0.724201	4_1:-71804097	Msa0569800:CDS
AGTTTATAGATATGCTAACG+GGG	0.729504	4_1:-71803318	Msa0569800:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTTTTATTATAAAAAA+AGG	+	chr4_1:71803709-71803728	None:intergenic	0.0%
!!	AGAAATATGAATAATTAAAT+AGG	-	chr4_1:71803111-71803130	Msa0569800:CDS	10.0%
!!!	TAATAGTTTGTAATATAATT+TGG	+	chr4_1:71803547-71803566	None:intergenic	10.0%
!!	TATAATAAAAAAAAAACTCT+AGG	-	chr4_1:71803714-71803733	Msa0569800:CDS	10.0%
!!!	TTTTCTTTCATAATAAATAA+GGG	+	chr4_1:71804177-71804196	None:intergenic	10.0%
!!!	ATTTTCTTTCATAATAAATA+AGG	+	chr4_1:71804178-71804197	None:intergenic	10.0%
!!	AATTTGGAAAAAAAATGAAA+GGG	-	chr4_1:71801717-71801736	Msa0569800:intron	15.0%
!!	TAATAATAACAACAAAAAAC+AGG	-	chr4_1:71802407-71802426	Msa0569800:intron	15.0%
!!	AATAATAACAACAAAAAACA+GGG	-	chr4_1:71802408-71802427	Msa0569800:intron	15.0%
!!!	GATCTTTAAAAAAAGTATTA+TGG	-	chr4_1:71802543-71802562	Msa0569800:intron	15.0%
!!	AAAATTTGATATAGTATTCT+TGG	-	chr4_1:71802566-71802585	Msa0569800:intron	15.0%
!!!	TTGTTTCTTCTAAAATAAAA+AGG	+	chr4_1:71804075-71804094	None:intergenic	15.0%
!!!	AACAAAAGTATCAAATTTTT+TGG	-	chr4_1:71804090-71804109	Msa0569800:CDS	15.0%
!!	TGGAAAAATGATAAAAAAGA+TGG	-	chr4_1:71801484-71801503	Msa0569800:three_prime_UTR	20.0%
!!	GAATTTGGAAAAAAAATGAA+AGG	-	chr4_1:71801716-71801735	Msa0569800:intron	20.0%
!!	AAATTGGAAAAAAGACAAAA+TGG	-	chr4_1:71801996-71802015	Msa0569800:intron	20.0%
!!!	AACTATTTTATAATCATGCA+TGG	-	chr4_1:71802636-71802655	Msa0569800:intron	20.0%
!!	TAGAAAATCATTTGCTTATA+GGG	-	chr4_1:71802666-71802685	Msa0569800:intron	20.0%
!!!	AAGTGTTTTTAAAAAATGTC+TGG	-	chr4_1:71802700-71802719	Msa0569800:intron	20.0%
!!	TTCTTATACTAATCTGATTT+GGG	+	chr4_1:71802762-71802781	None:intergenic	20.0%
!!	TTTCTTATACTAATCTGATT+TGG	+	chr4_1:71802763-71802782	None:intergenic	20.0%
!!!	TTATTAGTTTCAACTTATTC+AGG	-	chr4_1:71803037-71803056	Msa0569800:CDS	20.0%
!!	TCTAAGAAAAAATAAATTGC+AGG	+	chr4_1:71803353-71803372	None:intergenic	20.0%
!!	ATAAATACAAATACTAGCAA+TGG	-	chr4_1:71803895-71803914	Msa0569800:intron	20.0%
!!	GGTCAAAATTTCTTATAAAA+AGG	+	chr4_1:71804117-71804136	None:intergenic	20.0%
!	AATGATAAAAAAGATGGAAG+AGG	-	chr4_1:71801490-71801509	Msa0569800:three_prime_UTR	25.0%
!	ATGATAAAAAAGATGGAAGA+GGG	-	chr4_1:71801491-71801510	Msa0569800:three_prime_UTR	25.0%
!!	AATGATTTTGTACATGGATA+TGG	-	chr4_1:71801559-71801578	Msa0569800:intron	25.0%
!	GAGTTTCTAAATTTGCAAAT+GGG	-	chr4_1:71801581-71801600	Msa0569800:intron	25.0%
!	AGTTTCTAAATTTGCAAATG+GGG	-	chr4_1:71801582-71801601	Msa0569800:intron	25.0%
!	AGTTTATAGATATGCAAATG+TGG	-	chr4_1:71801681-71801700	Msa0569800:intron	25.0%
!	GAGTTTATAGATTTGCAAAT+GGG	-	chr4_1:71801959-71801978	Msa0569800:intron	25.0%
!	AGTTTATAGATTTGCAAATG+GGG	-	chr4_1:71801960-71801979	Msa0569800:intron	25.0%
!	TCATTGCAGATTTCAAATAA+AGG	-	chr4_1:71802276-71802295	Msa0569800:intron	25.0%
!!!	TTATGTGTTACTTCTGAATA+CGG	+	chr4_1:71802384-71802403	None:intergenic	25.0%
!!!	GTTTCATATAATAGCTTTGA+TGG	+	chr4_1:71802490-71802509	None:intergenic	25.0%
!	GTAGAAAATCATTTGCTTAT+AGG	-	chr4_1:71802665-71802684	Msa0569800:intron	25.0%
!!!	GTTTTTAAAAAATGTCTGGA+CGG	-	chr4_1:71802704-71802723	Msa0569800:intron	25.0%
!	AAGAATGTAAACAGATTAAG+AGG	-	chr4_1:71802860-71802879	Msa0569800:intron	25.0%
!!	AGTCATATTACTGTTTTATC+TGG	+	chr4_1:71803074-71803093	None:intergenic	25.0%
!	AAGATGGTAAATTACTAATC+AGG	-	chr4_1:71803409-71803428	Msa0569800:CDS	25.0%
!!	AACATCACAAACTAATTTTC+TGG	+	chr4_1:71803438-71803457	None:intergenic	25.0%
!!!	AGAAAATTAGTTTGTGATGT+TGG	-	chr4_1:71803437-71803456	Msa0569800:CDS	25.0%
!	AAAAAAAACTCTAGGTGTAT+TGG	-	chr4_1:71803722-71803741	Msa0569800:CDS	25.0%
!	AAAAAAACTCTAGGTGTATT+GGG	-	chr4_1:71803723-71803742	Msa0569800:CDS	25.0%
!!	CATATTCATGATTTTTGTCA+CGG	+	chr4_1:71803774-71803793	None:intergenic	25.0%
!	TAGAGTTCAAATGTAAAAAG+CGG	+	chr4_1:71803970-71803989	None:intergenic	25.0%
!!!	TCTTCTAAAATAAAAAGGAC+CGG	+	chr4_1:71804070-71804089	None:intergenic	25.0%
!!	TGACCAATTTTCAAATACAT+TGG	-	chr4_1:71804132-71804151	Msa0569800:CDS	25.0%
!	CATCCAATGTATTTGAAAAT+TGG	+	chr4_1:71804138-71804157	None:intergenic	25.0%
!	TGTTTACATTGGTAACATCA+AGG	-	chr4_1:71801261-71801280	Msa0569800:three_prime_UTR	30.0%
	TCAAGTGGATCAATATATGT+GGG	-	chr4_1:71801319-71801338	Msa0569800:three_prime_UTR	30.0%
	ATCAATATATGTGGGTGATT+GGG	-	chr4_1:71801327-71801346	Msa0569800:three_prime_UTR	30.0%
	ACCTCCATTCTTATAAGTTT+GGG	+	chr4_1:71801449-71801468	None:intergenic	30.0%
	TACCTCCATTCTTATAAGTT+TGG	+	chr4_1:71801450-71801469	None:intergenic	30.0%
!	TGGTCAAATGATTTTGTACA+TGG	-	chr4_1:71801553-71801572	Msa0569800:CDS	30.0%
	GGAGTTTCTAAATTTGCAAA+TGG	-	chr4_1:71801580-71801599	Msa0569800:intron	30.0%
	TGGAAAAAAAATGAAAGGGA+TGG	-	chr4_1:71801721-71801740	Msa0569800:intron	30.0%
	AAATTGGAAAACTGGGAAAA+TGG	-	chr4_1:71801855-71801874	Msa0569800:intron	30.0%
!	TTTGATGGTTGTATGTCAAA+TGG	-	chr4_1:71801919-71801938	Msa0569800:intron	30.0%
	GGAGTTTATAGATTTGCAAA+TGG	-	chr4_1:71801958-71801977	Msa0569800:intron	30.0%
	TGGAAAAAAGACAAAATGGA+TGG	-	chr4_1:71802000-71802019	Msa0569800:intron	30.0%
!	AATGGACTTATACATGGATA+TGG	-	chr4_1:71802075-71802094	Msa0569800:intron	30.0%
	GGAGTTTATAGATATGCTAA+CGG	-	chr4_1:71802096-71802115	Msa0569800:intron	30.0%
	GAGTTTATAGATATGCTAAC+GGG	-	chr4_1:71802097-71802116	Msa0569800:intron	30.0%
	AGTTTATAGATATGCTAACG+GGG	-	chr4_1:71802098-71802117	Msa0569800:intron	30.0%
	TCAAATGGAACAATATACGA+GGG	-	chr4_1:71802180-71802199	Msa0569800:intron	30.0%
	GATAAAAAAGTGACAGAGAA+AGG	-	chr4_1:71802213-71802232	Msa0569800:intron	30.0%
!	ATTTGAAATCTGCAATGAAG+TGG	+	chr4_1:71802274-71802293	None:intergenic	30.0%
!!	ATTCCCTTTTGATAACCAAA+GGG	+	chr4_1:71802326-71802345	None:intergenic	30.0%
!!	TATTCCCTTTTGATAACCAA+AGG	+	chr4_1:71802327-71802346	None:intergenic	30.0%
	ATCAAAAGGGAATATATGCA+AGG	-	chr4_1:71802333-71802352	Msa0569800:intron	30.0%
	ATGAAACTTAATCTGCAACT+TGG	-	chr4_1:71802503-71802522	Msa0569800:intron	30.0%
	TGAAAGAAAGGTGATAATAG+TGG	+	chr4_1:71802602-71802621	None:intergenic	30.0%
	GTATAGAACAGTTGAAAGAA+AGG	+	chr4_1:71802614-71802633	None:intergenic	30.0%
!	AGCAAATGATTTTCTACAGA+AGG	+	chr4_1:71802662-71802681	None:intergenic	30.0%
!	AAACACTGACATGAACATTT+TGG	-	chr4_1:71802829-71802848	Msa0569800:intron	30.0%
	AATTCCACAAGAAAATCCAA+AGG	-	chr4_1:71802889-71802908	Msa0569800:intron	30.0%
	ATTCCACAAGAAAATCCAAA+GGG	-	chr4_1:71802890-71802909	Msa0569800:intron	30.0%
!	GTTTGTGATGTTGGTTAATT+AGG	-	chr4_1:71803446-71803465	Msa0569800:CDS	30.0%
	CATCTAATGACATGTTGATA+GGG	-	chr4_1:71803493-71803512	Msa0569800:intron	30.0%
!!	TTTGGCTTACGATCAATTTT+GGG	+	chr4_1:71803529-71803548	None:intergenic	30.0%
!!	ATTTGGCTTACGATCAATTT+TGG	+	chr4_1:71803530-71803549	None:intergenic	30.0%
	TTTGGGAAAAAAATTCAGTC+TGG	-	chr4_1:71803646-71803665	Msa0569800:CDS	30.0%
	AAAAAATTCAGTCTGGTGTA+TGG	-	chr4_1:71803653-71803672	Msa0569800:CDS	30.0%
	AAAAAACTCTAGGTGTATTG+GGG	-	chr4_1:71803724-71803743	Msa0569800:CDS	30.0%
	GCATAGGAAAAATAAAACTC+TGG	+	chr4_1:71803842-71803861	None:intergenic	30.0%
!	CTATTCTGCAGTTTCAATTT+TGG	-	chr4_1:71803987-71804006	Msa0569800:CDS	30.0%
	AGAGATGTTGTATTCAGATG+AGG	-	chr4_1:71801237-71801256	Msa0569800:three_prime_UTR	35.0%
	GAGATGTTGTATTCAGATGA+GGG	-	chr4_1:71801238-71801257	Msa0569800:three_prime_UTR	35.0%
!	TACATTGGTAACATCAAGGA+TGG	-	chr4_1:71801265-71801284	Msa0569800:three_prime_UTR	35.0%
	GTCAAGTGGATCAATATATG+TGG	-	chr4_1:71801318-71801337	Msa0569800:three_prime_UTR	35.0%
	GATCAATATATGTGGGTGAT+TGG	-	chr4_1:71801326-71801345	Msa0569800:three_prime_UTR	35.0%
	AAGTATGAGGGTGAATTCTT+TGG	-	chr4_1:71801400-71801419	Msa0569800:three_prime_UTR	35.0%
	AGTATGAGGGTGAATTCTTT+GGG	-	chr4_1:71801401-71801420	Msa0569800:three_prime_UTR	35.0%
	ACCCAAACTTATAAGAATGG+AGG	-	chr4_1:71801445-71801464	Msa0569800:three_prime_UTR	35.0%
!!	GCTAATGGTGATGTTTTTGA+TGG	-	chr4_1:71801526-71801545	Msa0569800:three_prime_UTR	35.0%
	TACATTGGAAATTGGACTTG+TGG	-	chr4_1:71801610-71801629	Msa0569800:intron	35.0%
!!	ACTTGTGGTGATGTTTTTGA+TGG	-	chr4_1:71801625-71801644	Msa0569800:intron	35.0%
	ATTGCGCTTATACATGGATT+TGG	-	chr4_1:71801658-71801677	Msa0569800:intron	35.0%
	AAAAATGAAAGGGATGGATC+AGG	-	chr4_1:71801727-71801746	Msa0569800:intron	35.0%
	AAAATGAAAGGGATGGATCA+GGG	-	chr4_1:71801728-71801747	Msa0569800:intron	35.0%
	TTCTATGGTTGTTGGTCAAA+TGG	-	chr4_1:71801778-71801797	Msa0569800:intron	35.0%
	GAGTTTATAGATCCGCAAAT+GGG	-	chr4_1:71801818-71801837	Msa0569800:intron	35.0%
	AGTTTATAGATCCGCAAATG+GGG	-	chr4_1:71801819-71801838	Msa0569800:intron	35.0%
	AAAACTGGGAAAATGGATGA+TGG	-	chr4_1:71801862-71801881	Msa0569800:intron	35.0%
	AAACTGGGAAAATGGATGAT+GGG	-	chr4_1:71801863-71801882	Msa0569800:intron	35.0%
!!	GCTAATGGTGATGTTTTTGA+TGG	-	chr4_1:71801526-71801545	Msa0569800:three_prime_UTR	35.0%
!	ATGTCAAATGGACTTAGACA+TGG	-	chr4_1:71801931-71801950	Msa0569800:intron	35.0%
!	AATGGACTTAGACATGGATT+TGG	-	chr4_1:71801937-71801956	Msa0569800:intron	35.0%
	AAAGACAAAATGGATGGAAC+AGG	-	chr4_1:71802006-71802025	Msa0569800:intron	35.0%
	AAGACAAAATGGATGGAACA+GGG	-	chr4_1:71802007-71802026	Msa0569800:intron	35.0%
!	TTTGATGGTTGTTGGTCAAA+TGG	-	chr4_1:71802057-71802076	Msa0569800:intron	35.0%
!	TGGTCAAATGGACTTATACA+TGG	-	chr4_1:71802069-71802088	Msa0569800:intron	35.0%
!	ATGTCGATATTGGTAACTTC+AGG	-	chr4_1:71802121-71802140	Msa0569800:intron	35.0%
	AGTAAACTTCTCCATGACAA+TGG	-	chr4_1:71802144-71802163	Msa0569800:intron	35.0%
!	GTGTGTATTTTCCATTGTCA+TGG	+	chr4_1:71802158-71802177	None:intergenic	35.0%
	CTCAAATGGAACAATATACG+AGG	-	chr4_1:71802179-71802198	Msa0569800:intron	35.0%
	AACAATATACGAGGGTGATT+GGG	-	chr4_1:71802188-71802207	Msa0569800:intron	35.0%
	TTCAAATAAAGGTCAGTCTG+AGG	-	chr4_1:71802287-71802306	Msa0569800:intron	35.0%
!	TATGCAAGGAGTTCTAATTG+TGG	-	chr4_1:71802347-71802366	Msa0569800:intron	35.0%
	AAAGAAGAGATCGTGCATAT+GGG	-	chr4_1:71802452-71802471	Msa0569800:intron	35.0%
	TCATTTGCTTATAGGGTAGA+TGG	-	chr4_1:71802673-71802692	Msa0569800:intron	35.0%
!!	CTGACATGAACATTTTGGTA+TGG	-	chr4_1:71802834-71802853	Msa0569800:intron	35.0%
	TTCCACAAGAAAATCCAAAG+GGG	-	chr4_1:71802891-71802910	Msa0569800:intron	35.0%
!	ATTAAGAGCGTAATCCAGAT+GGG	-	chr4_1:71802937-71802956	Msa0569800:intron	35.0%
	TTCTATTGAGTGTGAGACTT+GGG	+	chr4_1:71803177-71803196	None:intergenic	35.0%
	ATTCTATTGAGTGTGAGACT+TGG	+	chr4_1:71803178-71803197	None:intergenic	35.0%
	AAGTCTCACACTCAATAGAA+TGG	-	chr4_1:71803177-71803196	Msa0569800:CDS	35.0%
	AGTCTCACACTCAATAGAAT+GGG	-	chr4_1:71803178-71803197	Msa0569800:CDS	35.0%
!!!	TCTTTGGTAGCTAGCTTTTA+GGG	-	chr4_1:71803237-71803256	Msa0569800:CDS	35.0%
	GCATCTAATGACATGTTGAT+AGG	-	chr4_1:71803492-71803511	Msa0569800:intron	35.0%
	AAAAACTCTAGGTGTATTGG+GGG	-	chr4_1:71803725-71803744	Msa0569800:CDS	35.0%
	TAGCAATGGACATAATGATG+AGG	-	chr4_1:71803909-71803928	Msa0569800:intron	35.0%
	AGCAATGGACATAATGATGA+GGG	-	chr4_1:71803910-71803929	Msa0569800:intron	35.0%
	CTAAAATAAAAAGGACCGGA+GGG	+	chr4_1:71804066-71804085	None:intergenic	35.0%
!	TCTAAAATAAAAAGGACCGG+AGG	+	chr4_1:71804067-71804086	None:intergenic	35.0%
!!	TCAGATGAGGGTGTTTACAT+TGG	-	chr4_1:71801250-71801269	Msa0569800:three_prime_UTR	40.0%
!	ATGGCAAAGGAAAGTACACA+TGG	-	chr4_1:71801296-71801315	Msa0569800:three_prime_UTR	40.0%
	TATGTGGGTGATTGGGTTTA+TGG	-	chr4_1:71801334-71801353	Msa0569800:three_prime_UTR	40.0%
	TGGGTTTATGGAGATAAGAC+AGG	-	chr4_1:71801346-71801365	Msa0569800:three_prime_UTR	40.0%
	GGGTTTATGGAGATAAGACA+GGG	-	chr4_1:71801347-71801366	Msa0569800:three_prime_UTR	40.0%
	TATGGAGATAAGACAGGGAA+AGG	-	chr4_1:71801352-71801371	Msa0569800:three_prime_UTR	40.0%
	GGCACCCAAACTTATAAGAA+TGG	-	chr4_1:71801442-71801461	Msa0569800:three_prime_UTR	40.0%
	AAGAATGGAGGTAGCTACAT+TGG	-	chr4_1:71801457-71801476	Msa0569800:three_prime_UTR	40.0%
	GAGGTAGCTACATTGGAAAT+TGG	-	chr4_1:71801464-71801483	Msa0569800:three_prime_UTR	40.0%
!!	GTGATGTTTTTGATGGCTGT+TGG	-	chr4_1:71801533-71801552	Msa0569800:exon	40.0%
	GGGATGTCTACATTGGAAAT+TGG	-	chr4_1:71801602-71801621	Msa0569800:intron	40.0%
	CGATCAATTGCGCTTATACA+TGG	-	chr4_1:71801652-71801671	Msa0569800:intron	40.0%
	GCAAATGTGGCTGTCTATAT+CGG	-	chr4_1:71801694-71801713	Msa0569800:intron	40.0%
	TGGCTGTCTATATCGGAATT+TGG	-	chr4_1:71801701-71801720	Msa0569800:intron	40.0%
	ATGGATCAGGGATTATGAGT+TGG	-	chr4_1:71801740-71801759	Msa0569800:intron	40.0%
	TGGATCAGGGATTATGAGTT+GGG	-	chr4_1:71801741-71801760	Msa0569800:intron	40.0%
!	GATACTGGTGATGTCTTCTA+TGG	-	chr4_1:71801763-71801782	Msa0569800:intron	40.0%
	GTGATGTCTTCTATGGTTGT+TGG	-	chr4_1:71801770-71801789	Msa0569800:intron	40.0%
!	AATGGACTTGCACATGGATA+TGG	-	chr4_1:71801796-71801815	Msa0569800:intron	40.0%
	GGAGTTTATAGATCCGCAAA+TGG	-	chr4_1:71801817-71801836	Msa0569800:intron	40.0%
	TCCACTGGAAATTGGAAAAC+TGG	-	chr4_1:71801847-71801866	Msa0569800:intron	40.0%
	CCACTGGAAATTGGAAAACT+GGG	-	chr4_1:71801848-71801867	Msa0569800:intron	40.0%
	ATGGAACAGGGATTATGAGT+TGG	-	chr4_1:71802019-71802038	Msa0569800:intron	40.0%
	TGGAACAGGGATTATGAGTT+GGG	-	chr4_1:71802020-71802039	Msa0569800:intron	40.0%
!!	GTTGATGGTGATGTCTTTGA+TGG	-	chr4_1:71802042-71802061	Msa0569800:intron	40.0%
!	GTGATGTCTTTGATGGTTGT+TGG	-	chr4_1:71802049-71802068	Msa0569800:intron	40.0%
	GGAAAATACACACGCTCAAA+TGG	-	chr4_1:71802165-71802184	Msa0569800:intron	40.0%
	GAACAATATACGAGGGTGAT+TGG	-	chr4_1:71802187-71802206	Msa0569800:intron	40.0%
	AGAGAAAGGCCTGAAGATAT+GGG	-	chr4_1:71802227-71802246	Msa0569800:intron	40.0%
!	GGAACCATCAGGATTTTGAA+GGG	+	chr4_1:71802253-71802272	None:intergenic	40.0%
!	TGGAACCATCAGGATTTTGA+AGG	+	chr4_1:71802254-71802273	None:intergenic	40.0%
	TGAGCCCTTTGGTTATCAAA+AGG	-	chr4_1:71802319-71802338	Msa0569800:intron	40.0%
	GAGCCCTTTGGTTATCAAAA+GGG	-	chr4_1:71802320-71802339	Msa0569800:intron	40.0%
	CAAAGAAGAGATCGTGCATA+TGG	-	chr4_1:71802451-71802470	Msa0569800:intron	40.0%
	TTAATCTGCAACTTGGCATC+AGG	-	chr4_1:71802510-71802529	Msa0569800:intron	40.0%
!!	AAGGTGATAATAGTGGACAG+TGG	+	chr4_1:71802595-71802614	None:intergenic	40.0%
!	AACCCCTTTGGATTTTCTTG+TGG	+	chr4_1:71802896-71802915	None:intergenic	40.0%
	CGCTCTTAATCAATGATGAG+TGG	+	chr4_1:71802927-71802946	None:intergenic	40.0%
!	GATTAAGAGCGTAATCCAGA+TGG	-	chr4_1:71802936-71802955	Msa0569800:intron	40.0%
	ATACTAAATAGCCTCCCATC+TGG	+	chr4_1:71802954-71802973	None:intergenic	40.0%
!!	ATAGAGACTCGAGAGTGTTA+TGG	-	chr4_1:71803147-71803166	Msa0569800:CDS	40.0%
!!	TAGAGACTCGAGAGTGTTAT+GGG	-	chr4_1:71803148-71803167	Msa0569800:CDS	40.0%
	ACTCAATAGAATGGGATGCT+TGG	-	chr4_1:71803186-71803205	Msa0569800:CDS	40.0%
	CTAAAAGCTAGCTACCAAAG+AGG	+	chr4_1:71803238-71803257	None:intergenic	40.0%
!!!	CTCTTTGGTAGCTAGCTTTT+AGG	-	chr4_1:71803236-71803255	Msa0569800:intron	40.0%
	GACTTGTATCTAAGCACTTG+AGG	+	chr4_1:71803269-71803288	None:intergenic	40.0%
	ATTGCATCTCAACAGGTAAG+AGG	+	chr4_1:71803388-71803407	None:intergenic	40.0%
	CATCTTCATTGCATCTCAAC+AGG	+	chr4_1:71803395-71803414	None:intergenic	40.0%
	CTGTTGAGATGCAATGAAGA+TGG	-	chr4_1:71803393-71803412	Msa0569800:CDS	40.0%
!	GATCAATTTTGGGCAAGTCT+TGG	+	chr4_1:71803519-71803538	None:intergenic	40.0%
!!!	GCCATGTATATTTTGACCTG+TGG	-	chr4_1:71803608-71803627	Msa0569800:CDS	40.0%
	GCCACAGGTCAAAATATACA+TGG	+	chr4_1:71803612-71803631	None:intergenic	40.0%
	TGGCTGAGACAAATAGAGTT+TGG	-	chr4_1:71803628-71803647	Msa0569800:CDS	40.0%
	GGCTGAGACAAATAGAGTTT+GGG	-	chr4_1:71803629-71803648	Msa0569800:CDS	40.0%
	GCTGTTCAGTTATGGAGTAT+CGG	-	chr4_1:71803675-71803694	Msa0569800:CDS	40.0%
!	CTGTTCAGTTATGGAGTATC+GGG	-	chr4_1:71803676-71803695	Msa0569800:CDS	40.0%
	TCACGGTATCCTTATCCTAT+CGG	+	chr4_1:71803757-71803776	None:intergenic	40.0%
	AATGGACATAATGATGAGGG+AGG	-	chr4_1:71803913-71803932	Msa0569800:intron	40.0%
	GATGGTACAGGAGATGAAAA+TGG	-	chr4_1:71803940-71803959	Msa0569800:intron	40.0%
!!	AACTTGTTACATACTCCCTC+CGG	-	chr4_1:71804048-71804067	Msa0569800:CDS	40.0%
!	ATCAAGGATGGACTTGCTCA+TGG	-	chr4_1:71801277-71801296	Msa0569800:three_prime_UTR	45.0%
!	GGAAAGTACACATGGTCAAG+TGG	-	chr4_1:71801304-71801323	Msa0569800:three_prime_UTR	45.0%
	CCATCAGGAGACAAGTATGA+GGG	-	chr4_1:71801388-71801407	Msa0569800:three_prime_UTR	45.0%
!	TTCTTTGGGAATTGCCGTCA+TGG	-	chr4_1:71801415-71801434	Msa0569800:three_prime_UTR	45.0%
	TGGAAGAGGGATTGAGACTT+TGG	-	chr4_1:71801504-71801523	Msa0569800:three_prime_UTR	45.0%
	GGGATTGAGACTTTGGCTAA+TGG	-	chr4_1:71801511-71801530	Msa0569800:three_prime_UTR	45.0%
	GCAAATGGGGATGTCTACAT+TGG	-	chr4_1:71801595-71801614	Msa0569800:intron	45.0%
!	GGGATTATGAGTTGGGATAC+TGG	-	chr4_1:71801748-71801767	Msa0569800:intron	45.0%
!	TGGTCAAATGGACTTGCACA+TGG	-	chr4_1:71801790-71801809	Msa0569800:intron	45.0%
!	CCCAGTTTTCCAATTTCCAG+TGG	+	chr4_1:71801851-71801870	None:intergenic	45.0%
!!	GGAAAATGGATGATGGGAGA+GGG	-	chr4_1:71801869-71801888	Msa0569800:intron	45.0%
!	ATGGGAGAGGGATTTTCGAT+TGG	-	chr4_1:71801881-71801900	Msa0569800:intron	45.0%
!	TGGGAGAGGGATTTTCGATT+GGG	-	chr4_1:71801882-71801901	Msa0569800:intron	45.0%
!	GGGATTTTCGATTGGGCTAA+TGG	-	chr4_1:71801889-71801908	Msa0569800:intron	45.0%
	GCAAATGGGGATGTCTACAT+CGG	-	chr4_1:71801595-71801614	Msa0569800:intron	45.0%
	GGGATGTCTACATCGGAAAT+TGG	-	chr4_1:71801980-71801999	Msa0569800:intron	45.0%
!!	GGGATTATGAGTTGGGTTGA+TGG	-	chr4_1:71802027-71802046	Msa0569800:intron	45.0%
	CAGAGAAAGGCCTGAAGATA+TGG	-	chr4_1:71802226-71802245	Msa0569800:intron	45.0%
	TTTGAAGGGCCCATATCTTC+AGG	+	chr4_1:71802239-71802258	None:intergenic	45.0%
	TGCAATGAAGTGGAACCATC+AGG	+	chr4_1:71802264-71802283	None:intergenic	45.0%
	GTGGAAAAACTGAACCCCTT+TGG	+	chr4_1:71802908-71802927	None:intergenic	45.0%
!!	AGAGACTCGAGAGTGTTATG+GGG	-	chr4_1:71803149-71803168	Msa0569800:CDS	45.0%
	CAATAGAATGGGATGCTTGG+TGG	-	chr4_1:71803189-71803208	Msa0569800:CDS	45.0%
!	TGCTTGGTGGAGTGTTTAAG+TGG	-	chr4_1:71803202-71803221	Msa0569800:intron	45.0%
!	GGTGGAGTGTTTAAGTGGTT+TGG	-	chr4_1:71803207-71803226	Msa0569800:intron	45.0%
!!	GTGGTTTGGTTCTTCCTCTT+TGG	-	chr4_1:71803221-71803240	Msa0569800:intron	45.0%
!!!	TTGGTAGCTAGCTTTTAGGG+AGG	-	chr4_1:71803240-71803259	Msa0569800:CDS	45.0%
!!!	TGGTAGCTAGCTTTTAGGGA+GGG	-	chr4_1:71803241-71803260	Msa0569800:CDS	45.0%
	ACTCTATTTGTCTCAGCCAC+AGG	+	chr4_1:71803627-71803646	None:intergenic	45.0%
	GGTGTATGGCTGTTCAGTTA+TGG	-	chr4_1:71803667-71803686	Msa0569800:CDS	45.0%
	CATCGTCATGATCTCTGCAT+AGG	+	chr4_1:71803858-71803877	None:intergenic	45.0%
	GAGATCATGACGATGCGAAA+TGG	-	chr4_1:71803863-71803882	Msa0569800:intron	45.0%
	AATGATGAGGGAGGACTAGA+TGG	-	chr4_1:71803922-71803941	Msa0569800:intron	45.0%
!!	TAAGAAATAATTTATAATAT+AGG	-	chr4_1:71802776-71802795	Msa0569800:intron	5.0%
!	GATGGACTTGCTCATGGCAA+AGG	-	chr4_1:71801283-71801302	Msa0569800:three_prime_UTR	50.0%
	GGACTGTTCATAGAGCCATC+AGG	-	chr4_1:71801373-71801392	Msa0569800:three_prime_UTR	50.0%
	GCCATCAGGAGACAAGTATG+AGG	-	chr4_1:71801387-71801406	Msa0569800:three_prime_UTR	50.0%
	CCCTCATACTTGTCTCCTGA+TGG	+	chr4_1:71801391-71801410	None:intergenic	50.0%
	TTTGGGTGCCAATGCCATGA+CGG	+	chr4_1:71801432-71801451	None:intergenic	50.0%
	AGTGGAGACATCCCCATTTG+CGG	+	chr4_1:71801833-71801852	None:intergenic	50.0%
	GGGATGTCTCCACTGGAAAT+TGG	-	chr4_1:71801839-71801858	Msa0569800:intron	50.0%
!!	GGGAAAATGGATGATGGGAG+AGG	-	chr4_1:71801868-71801887	Msa0569800:intron	50.0%
	GCTAACGGGGATGTCGATAT+TGG	-	chr4_1:71802111-71802130	Msa0569800:intron	50.0%
	TGGGCCCTTCAAAATCCTGA+TGG	-	chr4_1:71802246-71802265	Msa0569800:intron	50.0%
!	AAAGGTCAGTCTGAGGCATC+TGG	-	chr4_1:71802294-71802313	Msa0569800:intron	50.0%
!	AAGAGCGTAATCCAGATGGG+AGG	-	chr4_1:71802940-71802959	Msa0569800:intron	50.0%
	GGGAATTGCCGTCATGGCAT+TGG	-	chr4_1:71801421-71801440	Msa0569800:three_prime_UTR	55.0%
	GCAAATGGGGATGTCTCCAC+TGG	-	chr4_1:71801832-71801851	Msa0569800:intron	55.0%
	TATTGGGGGACGTGTCCGAT+AGG	-	chr4_1:71803739-71803758	Msa0569800:intron	55.0%
	GGGACGTGTCCGATAGGATA+AGG	-	chr4_1:71803745-71803764	Msa0569800:intron	55.0%
	GAGGGAGGACTAGATGGTAC+AGG	-	chr4_1:71803928-71803947	Msa0569800:intron	55.0%
	GGCATCTGGTCTGAGCCCTT+TGG	-	chr4_1:71802308-71802327	Msa0569800:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	71801231	71804207	71801231	ID=Msa0569800;Name=Msa0569800
chr4_1	mRNA	71801231	71804207	71801231	ID=Msa0569800-mRNA-1;Parent=Msa0569800;Name=Msa0569800-mRNA-1;_AED=0.12;_eAED=0.13;_QI=10\|0\|0.2\|1\|0\|0\|5\|319\|322
chr4_1	exon	71801231	71801574	71801231	ID=Msa0569800-mRNA-1:exon:24480;Parent=Msa0569800-mRNA-1
chr4_1	exon	71802975	71803209	71802975	ID=Msa0569800-mRNA-1:exon:24479;Parent=Msa0569800-mRNA-1
chr4_1	exon	71803237	71803476	71803237	ID=Msa0569800-mRNA-1:exon:24478;Parent=Msa0569800-mRNA-1
chr4_1	exon	71803513	71803755	71803513	ID=Msa0569800-mRNA-1:exon:24477;Parent=Msa0569800-mRNA-1
chr4_1	exon	71803972	71804207	71803972	ID=Msa0569800-mRNA-1:exon:24476;Parent=Msa0569800-mRNA-1
chr4_1	five_prime_UTR	71804198	71804207	71804198	ID=Msa0569800-mRNA-1:five_prime_utr;Parent=Msa0569800-mRNA-1
chr4_1	CDS	71803972	71804197	71803972	ID=Msa0569800-mRNA-1:cds;Parent=Msa0569800-mRNA-1
chr4_1	CDS	71803513	71803755	71803513	ID=Msa0569800-mRNA-1:cds;Parent=Msa0569800-mRNA-1
chr4_1	CDS	71803237	71803476	71803237	ID=Msa0569800-mRNA-1:cds;Parent=Msa0569800-mRNA-1
chr4_1	CDS	71802975	71803209	71802975	ID=Msa0569800-mRNA-1:cds;Parent=Msa0569800-mRNA-1
chr4_1	CDS	71801550	71801574	71801550	ID=Msa0569800-mRNA-1:cds;Parent=Msa0569800-mRNA-1
chr4_1	three_prime_UTR	71801231	71801549	71801231	ID=Msa0569800-mRNA-1:three_prime_utr;Parent=Msa0569800-mRNA-1

Gene Sequence

>Msa0569800

ATGTTGTATTCAGATGAGGGTGTTTACATTGGTAACATCAAGGATGGACTTGCTCATGGCAAAGGAAAGTACACATGGTCAAGTGGATCAATATATGTGGGTGATTGGGTTTATGGAGATAAGACAGGGAAAGGACTGTTCATAGAGCCATCAGGAGACAAGTATGAGGGTGAATTCTTTGGGAATTGCCGTCATGGCATTGGCACCCAAACTTATAAGAATGGAGTTTATAGATATGCAAATGTGGCTGTCTATATCGGAATTTGGAAAAAAAATGAAAGGGATGGATCAGGGATTATGAGTTGGGATACTGGTGATGTCTTCTATGGTTGTTGGTCAAATGGACTTGCACATGGATATGGAGTTTATAGATCCGCAAATGGGGATGTCTCCACTGGAAATTGGAAAACTGGGAAAATGGATGATGGGAGAGGGATTTTCGATTGGGCTAATGGTGATGTTTTTGATGTTTATAGATTTGCAAATGGGGATGTCTACATCGGAAATTGGAAAAAAGACAAAATGGATGGAACAGGGATTATGAGTTGGGTTGATGGTGATGTCTTTGATGGTTGTTGGTCAAATGGACTTATACATGGATATGGAGTTTATAGATATGCTAACGGGGATGTCGATATTGGTAACTTCAGGAGTAAACTTCTCCATGACAATGGAAAATACACACGCTCAAATGGAACAATATACGAGGAGAAAGGCCTGAAGATATGGGCCCTTCAAAATCCTGATGGTTCCACTTCATTGCAGATTTCAAATAAAGGTCAGTCTGAGGCATCTGGTCTGAGCCCTTTGGTTATCAAAAGGGAATATATGCAAGGAGTTCTAATTGTGGAGAAAATCAGACCGTATTCAGAAGTAACACATAATAATAATAATAACAACAAAAAACAGGGTGCATTTAGTGCGAAGAAAGCAAAGAAGAGATCAGATCATGACGATGCGAAATGGTGA

Protein sequence

>Msa0569800

MLYSDEGVYIGNIKDGLAHGKGKYTWSSGSIYVGDWVYGDKTGKGLFIEPSGDKYEGEFFGNCRHGIGTQTYKNGVYRYANVAVYIGIWKKNERDGSGIMSWDTGDVFYGCWSNGLAHGYGVYRSANGDVSTGNWKTGKMDDGRGIFDWANGDVFDVYRFANGDVYIGNWKKDKMDGTGIMSWVDGDVFDGCWSNGLIHGYGVYRYANGDVDIGNFRSKLLHDNGKYTRSNGTIYEEKGLKIWALQNPDGSTSLQISNKGQSEASGLSPLVIKREYMQGVLIVEKIRPYSEVTHNNNNNNKKQGAFSAKKAKKRSDHDDAKW*