AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1337480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337480 MtrunA17_Chr4g0072691 93.884 605 9 1 31 607 2 606 0.0 1155
Msa1337480 MtrunA17_Chr2g0281171 63.091 634 179 9 13 607 16 633 0.0 786
Msa1337480 MtrunA17_Chr4g0048161 62.758 631 182 8 13 607 15 628 0.0 783
Msa1337480 MtrunA17_Chr2g0304831 56.197 589 223 12 28 606 30 593 0.0 623
Msa1337480 MtrunA17_Chr6g0484131 47.301 389 186 8 13 387 4 387 2.81e-117 357
Msa1337480 MtrunA17_Chr6g0484121 47.815 389 184 8 13 387 4 387 1.87e-115 353
Msa1337480 MtrunA17_Chr6g0484111 45.192 416 206 9 13 411 4 414 1.42e-114 350
Msa1337480 MtrunA17_Chr8g0391221 48.670 376 179 7 21 386 13 384 3.64e-113 346
Msa1337480 MtrunA17_Chr8g0391211 46.907 388 187 8 12 386 74 455 5.15e-110 341
Msa1337480 MtrunA17_Chr4g0059411 40.764 471 250 8 15 461 2 467 1.64e-103 324
Msa1337480 MtrunA17_Chr7g0271691 37.464 347 189 11 42 376 31 361 7.82e-61 211
Msa1337480 MtrunA17_Chr7g0271671 32.432 333 212 8 52 378 60 385 1.28e-42 161
Msa1337480 MtrunA17_Chr7g0271681 34.021 291 182 6 91 376 8 293 7.60e-41 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1337480 AT5G57580.1 66.294 626 175 7 12 602 12 636 0.0 824
Msa1337480 AT2G18750.3 65.776 599 180 7 25 607 30 619 0.0 785
Msa1337480 AT2G18750.2 65.776 599 180 7 25 607 30 619 0.0 785
Msa1337480 AT2G18750.1 65.776 599 180 7 25 607 30 619 0.0 785
Msa1337480 AT4G25800.1 64.167 600 186 10 21 605 9 594 0.0 747
Msa1337480 AT4G25800.2 64.167 600 186 10 21 605 9 594 0.0 747
Msa1337480 AT2G24300.3 53.686 624 240 14 9 606 3 603 0.0 600
Msa1337480 AT2G24300.2 53.698 622 239 14 11 606 1 599 0.0 598
Msa1337480 AT2G24300.1 52.817 568 224 12 60 606 8 552 0.0 540
Msa1337480 AT4G31000.1 63.807 373 127 3 22 390 18 386 2.65e-171 499
Msa1337480 AT4G31000.1 48.039 102 50 2 507 606 462 562 2.57e-18 89.0
Msa1337480 AT4G31000.2 54.692 373 140 4 22 390 18 365 1.79e-137 412
Msa1337480 AT4G31000.2 48.039 102 50 2 507 606 441 541 2.63e-18 89.0
Msa1337480 AT5G62570.1 45.119 379 193 7 12 386 10 377 1.33e-106 331
Msa1337480 AT5G62570.4 45.879 364 182 7 12 371 10 362 4.87e-105 322
Msa1337480 AT5G62570.2 45.658 357 183 6 34 386 13 362 2.33e-103 322
Msa1337480 AT1G73805.1 45.346 419 202 14 12 417 3 407 2.97e-99 310
Msa1337480 AT5G62570.3 46.897 290 140 6 12 298 10 288 6.43e-82 259
Msa1337480 AT5G26920.3 38.187 364 207 8 35 395 28 376 7.85e-74 243
Msa1337480 AT5G26920.1 36.124 418 240 10 35 444 28 426 3.94e-73 245
Msa1337480 AT5G26920.2 35.646 418 234 11 35 444 28 418 4.95e-69 234

Find 215 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGCTTCCTTAGCAGTTTC+TGG 0.190436 tig0001526:-120210 None:intergenic
GAAACTTGCGGCTTCAATTT+AGG 0.227554 tig0001526:-123335 Msa1337480:CDS
GACCAATCATCAAAAGGATT+TGG 0.249013 tig0001526:+120972 None:intergenic
TCATTCCAAGCCTGAATTTA+CGG 0.256176 tig0001526:+122983 None:intergenic
CTGTCTAACGACCATTTATT+AGG 0.257471 tig0001526:-121116 Msa1337480:CDS
CCAACATTTCTTGTATCTTC+TGG 0.260798 tig0001526:+122448 None:intergenic
CGTAGATTCATTGGTGAAAA+AGG 0.263119 tig0001526:-122073 Msa1337480:CDS
AAGGACGACAAAATCGATTA+TGG 0.266160 tig0001526:+126485 None:intergenic
ACCAATCATCAAAAGGATTT+GGG 0.270429 tig0001526:+120973 None:intergenic
ATTCCAGGTCTTCCCCTAAA+AGG 0.273733 tig0001526:-123377 Msa1337480:intron
TTAGACTCCCCGTCACTTTC+CGG 0.276467 tig0001526:-126393 Msa1337480:five_prime_UTR
GGCTCCAATTCATGTTGTTC+TGG 0.279294 tig0001526:-123259 Msa1337480:CDS
ACCTACCGACGGAGCAAGTA+TGG 0.282294 tig0001526:-125952 Msa1337480:CDS
CCTTCTCAATCATCAACTTC+AGG 0.283311 tig0001526:-121032 Msa1337480:CDS
TATCACCTTTCCATTTGTTC+TGG 0.286857 tig0001526:-120385 Msa1337480:three_prime_UTR
CTCGATGTCGTTGTCCTTGA+AGG 0.310403 tig0001526:-123183 Msa1337480:CDS
AGTTAGATGAATAGGTTGTT+TGG 0.310778 tig0001526:-120641 Msa1337480:exon
ATGATCATTTCTAGAGCTTT+GGG 0.311058 tig0001526:+121079 None:intergenic
TCAACATTGATAAAACTCTT+AGG 0.314107 tig0001526:-126699 None:intergenic
AGGAGGGAGTTGGAACATTA+GGG 0.319027 tig0001526:-123044 Msa1337480:CDS
GTCCATGGTATCAACATTCT+TGG 0.320854 tig0001526:-120527 Msa1337480:three_prime_UTR
TATGATCATTTCTAGAGCTT+TGG 0.327299 tig0001526:+121078 None:intergenic
ATGAAGGTTGCATCTGGTTT+TGG 0.327841 tig0001526:-122964 Msa1337480:CDS
GATAGAGGAGTTAGATGAAT+AGG 0.330153 tig0001526:-120649 Msa1337480:exon
GACCTTCCACTAAGTCTTGC+AGG 0.335446 tig0001526:+124360 None:intergenic
AAGGAGGGAGTTGGAACATT+AGG 0.344356 tig0001526:-123045 Msa1337480:CDS
AGGAAAAGTGGAAGGCGAGC+AGG 0.346252 tig0001526:-123283 Msa1337480:CDS
CTTTCTTCGACTTGTGGTTA+AGG 0.348617 tig0001526:-122659 Msa1337480:CDS
AGAATTGCTCTCCTGTTATA+AGG 0.349484 tig0001526:+122392 None:intergenic
GTTTCTCTTTGTATTATTTG+TGG 0.350430 tig0001526:+126544 None:intergenic
GTTAGATGAATAGGTTGTTT+GGG 0.361733 tig0001526:-120640 Msa1337480:exon
CATTGTTAAAATCGCCTTCA+AGG 0.369195 tig0001526:+123169 None:intergenic
TCAACCAGAACAACATGAAT+TGG 0.380406 tig0001526:+123255 None:intergenic
TTGATGATTGGTCAAACAAC+AGG 0.382766 tig0001526:-120962 Msa1337480:CDS
TATCCAAGCCAGGCCTTGAT+TGG 0.383278 tig0001526:-121179 Msa1337480:CDS
AAAGATAACTTAGCAGTGTT+TGG 0.386742 tig0001526:+126435 None:intergenic
ATACCATGGACTGCACAATT+TGG 0.386826 tig0001526:+120539 None:intergenic
AAAAGGGCCCTTGAGGGTGG+TGG 0.392097 tig0001526:-125927 Msa1337480:CDS
GGTGAGCATTGCCTAATAAA+TGG 0.392285 tig0001526:+121105 None:intergenic
TGATAGAGGAGAGTATTAAC+AGG 0.393310 tig0001526:+120403 None:intergenic
CAGACAATTCAAGCTGGATA+AGG 0.396389 tig0001526:-123008 Msa1337480:CDS
GAGCTGCGTGGCCTTATAAC+AGG 0.396907 tig0001526:-122403 Msa1337480:CDS
GAAAGAGACCTTTGTTGAAC+GGG 0.397608 tig0001526:-123086 Msa1337480:CDS
CTTGGAATGAAGGTTGCATC+TGG 0.399676 tig0001526:-122970 Msa1337480:CDS
ATAACCATCCTCAGTATTCA+TGG 0.401476 tig0001526:+120821 None:intergenic
TTGTTTGGGCAAATGATAGT+AGG 0.407310 tig0001526:-120626 Msa1337480:three_prime_UTR
GTATGGAGATTGGAGAAAAT+AGG 0.411051 tig0001526:-122739 Msa1337480:CDS
CATGGCTTTCAAATTCCTCT+TGG 0.412910 tig0001526:+123127 None:intergenic
ACAATGAAGATGATGAAGAT+TGG 0.416706 tig0001526:-123152 Msa1337480:CDS
TCAACAAAGGTCTCTTTCCT+TGG 0.417676 tig0001526:+123091 None:intergenic
AGAGCAGGCCTCTTTCGTTC+AGG 0.419912 tig0001526:+125891 None:intergenic
TTCAATAAGCAAGAAATTTG+AGG 0.423231 tig0001526:+126271 None:intergenic
TCGTCCTGGCAAAGCTGTTG+TGG 0.427546 tig0001526:-120745 Msa1337480:CDS
ATCAAAATGACTCCGAGAGC+TGG 0.427633 tig0001526:+121151 None:intergenic
TTAGGTCCTGCAAGACTTAG+TGG 0.427991 tig0001526:-124366 Msa1337480:CDS
CTTACAACTCTACGAAGAAT+AGG 0.430379 tig0001526:+124952 None:intergenic
GAGCGTGCTTTGGCGAAGTT+AGG 0.431759 tig0001526:-124384 Msa1337480:CDS
ACGGAGCAAGTATGGGGAAA+AGG 0.432238 tig0001526:-125944 Msa1337480:CDS
GGAAAAGTGGAAGGCGAGCA+GGG 0.434212 tig0001526:-123282 Msa1337480:CDS
AATGGATTATTTGCCTGAGT+TGG 0.436962 tig0001526:+126510 None:intergenic
TAAATTCAGGCTTGGAATGA+AGG 0.442836 tig0001526:-122980 Msa1337480:CDS
GGATAAGGAGCCGTAAATTC+AGG 0.444391 tig0001526:-122993 Msa1337480:CDS
TTTCCAATCAAGGCCTGGCT+TGG 0.454955 tig0001526:+121176 None:intergenic
GTATTATTTGTGGTCTACTC+TGG 0.457881 tig0001526:+126554 None:intergenic
CTTGGCGTTCTTTCACCACA+TGG 0.459760 tig0001526:+123109 None:intergenic
AGGACGACAAAATCGATTAT+GGG 0.463927 tig0001526:+126486 None:intergenic
TTGTTTGACCAATCATCAAA+AGG 0.464007 tig0001526:+120966 None:intergenic
ACAAAATCGATTATGGGTAA+TGG 0.465384 tig0001526:+126492 None:intergenic
TGGAATTTCCAATCAAGGCC+TGG 0.466762 tig0001526:+121171 None:intergenic
GGGAAAAGGGCCCTTGAGGG+TGG 0.466874 tig0001526:-125930 Msa1337480:CDS
CTGCATTGGGTGATGATGTA+TGG 0.466882 tig0001526:-122756 Msa1337480:CDS
GATGACCTCCCATGCTGAAA+AGG 0.468471 tig0001526:+120847 None:intergenic
TTGGAGAAAATAGGTAAGGA+TGG 0.469150 tig0001526:-122730 Msa1337480:CDS
CGTCCTGGCAAAGCTGTTGT+GGG 0.470319 tig0001526:-120744 Msa1337480:CDS
AAGCATTATCCTCCTGCATT+GGG 0.471644 tig0001526:-122769 Msa1337480:CDS
CGGAGCAAGTATGGGGAAAA+GGG 0.472146 tig0001526:-125943 Msa1337480:CDS
GAAAAGTGGAAGGCGAGCAG+GGG 0.473276 tig0001526:-123281 Msa1337480:CDS
ACTGCTAAGTTATCTTTCTC+AGG 0.476266 tig0001526:-126429 Msa1337480:five_prime_UTR
TGCTAAGGAAGCCGATGTAC+TGG 0.478188 tig0001526:+120218 None:intergenic
ATGGGGAAAAGGGCCCTTGA+GGG 0.479275 tig0001526:-125933 Msa1337480:CDS
TGAGAAGCGGGCTCAGATAG+AGG 0.479668 tig0001526:-120664 Msa1337480:CDS
AGTGAAGTATTGAAGAGTAA+AGG 0.481642 tig0001526:+126355 None:intergenic
AGCCGCAAGTTTCTACCATC+AGG 0.481921 tig0001526:+123345 None:intergenic
TGAAGAAGTGGAGCGTGCTT+TGG 0.482538 tig0001526:-124394 Msa1337480:CDS
AACAGTAAAAGCCACTGTCT+TGG 0.483889 tig0001526:+122918 None:intergenic
AACAAATGGAAAGGTGATAG+AGG 0.484106 tig0001526:+120389 None:intergenic
CCAGGTGTACGTAGATTCAT+TGG 0.488667 tig0001526:-122082 Msa1337480:intron
CATTTCTAGAGCTTTGGGAT+TGG 0.490729 tig0001526:+121084 None:intergenic
TCTTCCCCTAAAAGGATTGA+AGG 0.490929 tig0001526:-123369 Msa1337480:CDS
GAAGCATTATCCTCCTGCAT+TGG 0.492254 tig0001526:-122770 Msa1337480:CDS
AGTGGAAGTGTGGTAACATC+TGG 0.494354 tig0001526:-123225 Msa1337480:CDS
ACAGAAAGCCGGAAAGTGAC+GGG 0.497033 tig0001526:+126385 None:intergenic
ATAGGAGATGGCATGAATGA+TGG 0.499594 tig0001526:+120792 None:intergenic
AGAGAAGAGAGAGAGAAAGA+AGG 0.501469 tig0001526:+126466 None:intergenic
AGCACAGTAGGGTTGGCTCT+TGG 0.502333 tig0001526:-121056 Msa1337480:CDS
TGTTACCACACTTCCACTGT+TGG 0.502440 tig0001526:+123230 None:intergenic
TCTCAAATCTGACAGGTGTT+CGG 0.504630 tig0001526:+120340 None:intergenic
AAAGATAGCAGCTGAGAAGC+GGG 0.505005 tig0001526:-120676 Msa1337480:CDS
ATTTGGGGCAGGTGGTTGCA+TGG 0.506195 tig0001526:+120989 None:intergenic
GAGCGATCCTCATCGAAGTT+CGG 0.507680 tig0001526:+120768 None:intergenic
TGAAGACTTTCTTCGACTTG+TGG 0.512373 tig0001526:-122665 Msa1337480:CDS
CAAAGACATGTGTTCTAAGC+GGG 0.515939 tig0001526:-122489 Msa1337480:CDS
GATGAGGATCGCTCTCGTCC+TGG 0.516093 tig0001526:-120759 Msa1337480:CDS
GGGTGATGATGTATGGAGAT+TGG 0.516199 tig0001526:-122749 Msa1337480:CDS
CATGGACTGCACAATTTGGT+TGG 0.518331 tig0001526:+120543 None:intergenic
CATCCCACAACAGCTTTGCC+AGG 0.518586 tig0001526:+120741 None:intergenic
CCAGAAGATACAAGAAATGT+TGG 0.524917 tig0001526:-122448 Msa1337480:CDS
GAATAGAGGAAGAGCCAGTC+GGG 0.527053 tig0001526:+123311 None:intergenic
CCCATACTTGCTCCGTCGGT+AGG 0.528831 tig0001526:+125951 None:intergenic
ATGATCAGCCTGAACGAAAG+AGG 0.530138 tig0001526:-125899 Msa1337480:CDS
TCTATTCACAGGAGGAAAAG+TGG 0.530836 tig0001526:-123295 Msa1337480:CDS
AGAAATGATCATAGCACAGT+AGG 0.531016 tig0001526:-121068 Msa1337480:CDS
CCTACCGACGGAGCAAGTAT+GGG 0.532278 tig0001526:-125951 Msa1337480:CDS
AGAGCTGGAATTTCCAATCA+AGG 0.532492 tig0001526:+121166 None:intergenic
TAGGAGATGGCATGAATGAT+GGG 0.538746 tig0001526:+120793 None:intergenic
TGATTGGAAATTCCAGCTCT+CGG 0.541752 tig0001526:-121163 Msa1337480:CDS
TGATCATAGCACAGTAGGGT+TGG 0.542419 tig0001526:-121063 Msa1337480:CDS
GAGATTGGAGAAAATAGGTA+AGG 0.543540 tig0001526:-122734 Msa1337480:CDS
GGCATACGACAATTGGGAGC+AGG 0.543575 tig0001526:-122052 Msa1337480:CDS
CAACCAAATTGTGCAGTCCA+TGG 0.548998 tig0001526:-120542 Msa1337480:three_prime_UTR
TTTACTGTTAAAGATCATAG+AGG 0.549297 tig0001526:-122904 Msa1337480:CDS
GTGACACTCAAGGAGGGAGT+TGG 0.551007 tig0001526:-123054 Msa1337480:CDS
GAAAGAGGCCTGCTCTTGCT+AGG 0.551299 tig0001526:-125884 Msa1337480:intron
AGGAGCCGTAAATTCAGGCT+TGG 0.551888 tig0001526:-122988 Msa1337480:CDS
GCGGTATGTCAAACAAGATG+TGG 0.556486 tig0001526:-122531 Msa1337480:CDS
AACAGAAAGCCGGAAAGTGA+CGG 0.556818 tig0001526:+126384 None:intergenic
TCGAAGTTCGGCATAGGAGA+TGG 0.557623 tig0001526:+120780 None:intergenic
GCTTCAATTTAGGTCCCGAC+TGG 0.559550 tig0001526:-123325 Msa1337480:CDS
TCATCAAAAGGATTTGGGGC+AGG 0.561538 tig0001526:+120978 None:intergenic
CTGGCAAAGCTGTTGTGGGA+TGG 0.561875 tig0001526:-120740 Msa1337480:CDS
GGTTGCATGGAAGAGCTAGC+AGG 0.563310 tig0001526:+121002 None:intergenic
GGAAAGAGACCTTTGTTGAA+CGG 0.564757 tig0001526:-123087 Msa1337480:CDS
GAAACAGGTGAGTGAAGAAG+TGG 0.565250 tig0001526:-124406 Msa1337480:intron
TGCAGTTCCCCGTTCAACAA+AGG 0.567230 tig0001526:+123078 None:intergenic
CATCATCTCCACCACCCTCA+AGG 0.569454 tig0001526:+125919 None:intergenic
TGCTGTAAAATCAGATACAC+AGG 0.570797 tig0001526:+120498 None:intergenic
CTGGCTCTTCCTCTATTCAC+AGG 0.571268 tig0001526:-123306 Msa1337480:CDS
CATACATCATCACCCAATGC+AGG 0.571328 tig0001526:+122757 None:intergenic
TTCTCTTAGCGATAATCAGA+AGG 0.571541 tig0001526:-122359 Msa1337480:intron
AGTTATATCTCAAATCTGAC+AGG 0.574283 tig0001526:+120333 None:intergenic
GAAAGATAGCAGCTGAGAAG+CGG 0.574867 tig0001526:-120677 Msa1337480:CDS
GGTGACGAGGTATCCAAGCC+AGG 0.574995 tig0001526:-121189 Msa1337480:CDS
AATTAGTACCTAGCAAGAGC+AGG 0.575775 tig0001526:+125876 None:intergenic
TGTAATTGTTGAAGCTCTCA+AGG 0.576695 tig0001526:-125010 Msa1337480:CDS
TTTCCCCATACTTGCTCCGT+CGG 0.576968 tig0001526:+125947 None:intergenic
TGTTTGACATACCGCTCCCA+AGG 0.580423 tig0001526:+122539 None:intergenic
CCTTCCATGAATACTGAGGA+TGG 0.581352 tig0001526:-120825 Msa1337480:CDS
AGATCAAGGCAGCAATGAGG+TGG 0.581898 tig0001526:-120713 Msa1337480:CDS
TGGAGAAAATAGGTAAGGAT+GGG 0.582851 tig0001526:-122729 Msa1337480:CDS
AAAAGTGGAAGGCGAGCAGG+GGG 0.583445 tig0001526:-123280 Msa1337480:CDS
ATACTTGCTCCGTCGGTAGG+TGG 0.585208 tig0001526:+125954 None:intergenic
TCAAAAGGATTTGGGGCAGG+TGG 0.585247 tig0001526:+120981 None:intergenic
GATCAAGGCAGCAATGAGGT+GGG 0.585308 tig0001526:-120712 Msa1337480:CDS
TTAGAACACATGTCTTTGCA+TGG 0.587365 tig0001526:+122494 None:intergenic
GTAAAAGAAACGAAGTGTAA+CGG 0.588321 tig0001526:+126305 None:intergenic
GAAATGATCATAGCACAGTA+GGG 0.588957 tig0001526:-121067 Msa1337480:CDS
GTGGAGTCAATTGATTATGA+TGG 0.589511 tig0001526:-121952 Msa1337480:CDS
GAAAGTGACGGGGAGTCTAA+CGG 0.591064 tig0001526:+126396 None:intergenic
AAAAGGATTGAAGGTCCTGA+TGG 0.591187 tig0001526:-123360 Msa1337480:CDS
TATTTACAGACAATTCAAGC+TGG 0.591421 tig0001526:-123014 Msa1337480:CDS
TCCTCATCGAAGTTCGGCAT+AGG 0.592002 tig0001526:+120774 None:intergenic
ATCTGAAAATGAACTTCATG+TGG 0.593527 tig0001526:-121971 Msa1337480:CDS
TGAATAGAGGAAGAGCCAGT+CGG 0.595918 tig0001526:+123310 None:intergenic
TTGGTCAAACAACAGGGACA+AGG 0.596217 tig0001526:-120955 Msa1337480:CDS
TATGGGGAAAAGGGCCCTTG+AGG 0.596359 tig0001526:-125934 Msa1337480:CDS
TGTGGGATGGCTGAAGATCA+AGG 0.598934 tig0001526:-120727 Msa1337480:CDS
AACCAAGAATGTTGATACCA+TGG 0.601047 tig0001526:+120525 None:intergenic
TGTGGATTGCACCAGTACAT+CGG 0.602479 tig0001526:-120229 Msa1337480:three_prime_UTR
CCTGAAGTTGATGATTGAGA+AGG 0.602603 tig0001526:+121032 None:intergenic
ATCATCTCCACCACCCTCAA+GGG 0.602604 tig0001526:+125920 None:intergenic
GCAAAGACATGTGTTCTAAG+CGG 0.603417 tig0001526:-122490 Msa1337480:CDS
CCAATCATCAAAAGGATTTG+GGG 0.604126 tig0001526:+120974 None:intergenic
ACTCAATGACTTTCCAACTC+AGG 0.604793 tig0001526:-126523 Msa1337480:five_prime_UTR
GTACGATGGCAAATCACTTG+TGG 0.605703 tig0001526:-122022 Msa1337480:CDS
CCATCCTCAGTATTCATGGA+AGG 0.606998 tig0001526:+120825 None:intergenic
CGGTATGTCAAACAAGATGT+GGG 0.611205 tig0001526:-122530 Msa1337480:CDS
ATCAAGGCAGCAATGAGGTG+GGG 0.619987 tig0001526:-120711 Msa1337480:CDS
TCGTTAACCAGAAACTGCTA+AGG 0.620384 tig0001526:+120203 None:intergenic
CGAAGTGTAACGGAGTGAGA+CGG 0.622734 tig0001526:+126315 None:intergenic
TTAAGGATCAACAGAAATTG+CGG 0.629713 tig0001526:-122642 Msa1337480:CDS
TTCACAGGAGGAAAAGTGGA+AGG 0.630540 tig0001526:-123291 Msa1337480:CDS
TAAAACCAGAACAAATGGAA+AGG 0.632256 tig0001526:+120380 None:intergenic
GAGTCAATTGATTATGATGG+CGG 0.635927 tig0001526:-121949 Msa1337480:intron
TGATGATTGGTCAAACAACA+GGG 0.639296 tig0001526:-120961 Msa1337480:CDS
CTACCGACGGAGCAAGTATG+GGG 0.641969 tig0001526:-125950 Msa1337480:CDS
GGAGGGAGTTGGAACATTAG+GGG 0.645782 tig0001526:-123043 Msa1337480:CDS
GTCCTGCAAGACTTAGTGGA+AGG 0.645964 tig0001526:-124362 Msa1337480:intron
TTAATGTAGATCCTTGGGAG+CGG 0.650892 tig0001526:-122550 Msa1337480:intron
TGGTCAAACAACAGGGACAA+GGG 0.651328 tig0001526:-120954 Msa1337480:CDS
CTGCAAGTGACACTCAAGGA+GGG 0.652548 tig0001526:-123060 Msa1337480:CDS
AAGTCGAAGAAAGTCTTCAA+CGG 0.655298 tig0001526:+122669 None:intergenic
ACATCATCACCCAATGCAGG+AGG 0.659507 tig0001526:+122760 None:intergenic
TGATGAAGATTGGAGCCAAG+AGG 0.663673 tig0001526:-123142 Msa1337480:CDS
GTCCTGATGGTAGAAACTTG+CGG 0.666102 tig0001526:-123347 Msa1337480:CDS
GCATGGAAGAGCTAGCAGGA+TGG 0.668685 tig0001526:+121006 None:intergenic
TCCTATGCCGAACTTCGATG+AGG 0.673170 tig0001526:-120775 Msa1337480:CDS
GTATCTCATTACTTCTAACG+CGG 0.674561 tig0001526:+120901 None:intergenic
GGAACTGCAAGTGACACTCA+AGG 0.675027 tig0001526:-123064 Msa1337480:CDS
CAGAAAGCCGGAAAGTGACG+GGG 0.676406 tig0001526:+126386 None:intergenic
GGCCACGCAGCTCATAGACG+TGG 0.680553 tig0001526:+122413 None:intergenic
TGATTCCAACAGTGGAAGTG+TGG 0.681364 tig0001526:-123235 Msa1337480:CDS
GTTCTGGTTGATTCCAACAG+TGG 0.682091 tig0001526:-123243 Msa1337480:CDS
GCTCTTCCTCTATTCACAGG+AGG 0.683262 tig0001526:-123303 Msa1337480:CDS
TTAACAATAGCATGGTGACG+AGG 0.687450 tig0001526:-121202 Msa1337480:CDS
CATTCGTGAAGCCAAGACAG+TGG 0.688012 tig0001526:-122929 Msa1337480:CDS
ATGCAGAGACCACCTACCGA+CGG 0.690427 tig0001526:-125963 Msa1337480:CDS
AAAGAGACCTTTGTTGAACG+GGG 0.691944 tig0001526:-123085 Msa1337480:CDS
TCATCCTTCCATGAATACTG+AGG 0.700726 tig0001526:-120829 Msa1337480:CDS
TGAAGATCAAGGCAGCAATG+AGG 0.700972 tig0001526:-120716 Msa1337480:CDS
AATTGTTGAAGCTCTCAAGG+TGG 0.705133 tig0001526:-125007 Msa1337480:CDS
ACTGCAAGTGACACTCAAGG+AGG 0.718184 tig0001526:-123061 Msa1337480:CDS
GAGCAGGTTGTAGAGTACGA+TGG 0.728618 tig0001526:-122036 Msa1337480:CDS
AACCACGTCTATGAGCTGCG+TGG 0.733614 tig0001526:-122415 Msa1337480:CDS
CATGTGGTGAAAGAACGCCA+AGG 0.747220 tig0001526:-123108 Msa1337480:CDS
AGAGGAATTTGAAAGCCATG+TGG 0.749246 tig0001526:-123124 Msa1337480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAATAAAAAAA+AGG - tig0001526:120315-120334 Msa1337480:three_prime_UTR 0.0%
!! TATTTAATTATTATATTATA+TGG - tig0001526:120852-120871 Msa1337480:CDS 0.0%
!! AAAATAAAATATAATAAAAT+GGG + tig0001526:124333-124352 None:intergenic 0.0%
!! TAAAATAAAATATAATAAAA+TGG + tig0001526:124334-124353 None:intergenic 0.0%
!!! ATTATTATATTATATGGTTT+TGG - tig0001526:120858-120877 Msa1337480:CDS 10.0%
!! AATGAAAATTCAAATTAAAA+AGG + tig0001526:121805-121824 None:intergenic 10.0%
!! TAAATTAAATTTAACTATGA+TGG + tig0001526:123458-123477 None:intergenic 10.0%
!! TTCATATCAATTATATTAAT+TGG + tig0001526:124631-124650 None:intergenic 10.0%
!! AAAAATAAAAATGATACATT+AGG + tig0001526:125361-125380 None:intergenic 10.0%
!!! AATTTTTTTAAGATTAGAGT+AGG - tig0001526:120811-120830 Msa1337480:CDS 15.0%
!! ATTGAAAATAAAATACTAAC+TGG + tig0001526:121117-121136 None:intergenic 15.0%
!!! ATTTGAATTTTCATTCTTAA+TGG - tig0001526:121810-121829 Msa1337480:intron 15.0%
!!! TTTTTGATTCAGTAATATTT+TGG - tig0001526:122010-122029 Msa1337480:CDS 15.0%
!!! AACTACAAATATTTTGAAAT+TGG + tig0001526:122596-122615 None:intergenic 15.0%
!!! TTACATTCTAAAAATTTCAT+TGG + tig0001526:123264-123283 None:intergenic 15.0%
!! ATAAAATATAATAAAATGGG+TGG + tig0001526:124330-124349 None:intergenic 15.0%
!!! TTTGTGTAATTTTGTTTTGT+AGG - tig0001526:120892-120911 Msa1337480:CDS 20.0%
!!! TTGTGTAATTTTGTTTTGTA+GGG - tig0001526:120893-120912 Msa1337480:CDS 20.0%
!! TCAACAAAAAAGATAAAGAA+GGG + tig0001526:121509-121528 None:intergenic 20.0%
!! TTCAACAAAAAAGATAAAGA+AGG + tig0001526:121510-121529 None:intergenic 20.0%
!!! ATGTGAATTTTTCTTCTTAA+TGG - tig0001526:121534-121553 Msa1337480:intron 20.0%
!!! CTAGCTTTAGTTTTTTTTTT+GGG - tig0001526:121689-121708 Msa1337480:intron 20.0%
!!! ATTCAGTAATATTTTGGTTT+GGG - tig0001526:122016-122035 Msa1337480:CDS 20.0%
!! ACAAATACAATAAAAATGCA+TGG + tig0001526:122650-122669 None:intergenic 20.0%
!! TCAAAAACACAAAGATATAA+GGG + tig0001526:122741-122760 None:intergenic 20.0%
!! TTCAAAAACACAAAGATATA+AGG + tig0001526:122742-122761 None:intergenic 20.0%
!! TTGAATCTAAATCTAATAGA+GGG + tig0001526:122776-122795 None:intergenic 20.0%
!!! TATTTCTATTTAATGTCTCA+AGG + tig0001526:123145-123164 None:intergenic 20.0%
!!! TATTTTTAACCAGCTAATTT+AGG - tig0001526:123163-123182 Msa1337480:CDS 20.0%
!! ATTAAATTTAACTATGATGG+TGG + tig0001526:123455-123474 None:intergenic 20.0%
!! TTCTAATAAGTTAAAATTCC+AGG - tig0001526:123509-123528 Msa1337480:intron 20.0%
!!! ATATTAAAAAATGGTGTTGT+AGG + tig0001526:124081-124100 None:intergenic 20.0%
!!! TTTATTTTAATGTAGATCCT+TGG - tig0001526:124345-124364 Msa1337480:intron 20.0%
!!! TTATTTTAATGTAGATCCTT+GGG - tig0001526:124346-124365 Msa1337480:intron 20.0%
!!! TCTGATACCTTTAATTTTTT+TGG - tig0001526:124790-124809 Msa1337480:intron 20.0%
!!! CTGATACCTTTAATTTTTTT+GGG - tig0001526:124791-124810 Msa1337480:intron 20.0%
!! TTCTATTCCATTCAATTATT+TGG + tig0001526:125079-125098 None:intergenic 20.0%
!! TTTAAGAAATATGATAGAAC+AGG - tig0001526:125109-125128 Msa1337480:intron 20.0%
!! TTAAGAAATATGATAGAACA+GGG - tig0001526:125110-125129 Msa1337480:intron 20.0%
!!! AAAAGTATTTGTATAACTAG+GGG + tig0001526:125229-125248 None:intergenic 20.0%
!!! GAAAAGTATTTGTATAACTA+GGG + tig0001526:125230-125249 None:intergenic 20.0%
!!! AGAAAAGTATTTGTATAACT+AGG + tig0001526:125231-125250 None:intergenic 20.0%
! GTTTCTCTTTGTATTATTTG+TGG + tig0001526:120360-120379 None:intergenic 25.0%
! TTCAATAAGCAAGAAATTTG+AGG + tig0001526:120633-120652 None:intergenic 25.0%
!! TTTTCTTGACTCTAATTTCA+AGG - tig0001526:120654-120673 Msa1337480:CDS 25.0%
! TTGAATTACTGTATCCTATT+AGG - tig0001526:120751-120770 Msa1337480:CDS 25.0%
! TGAATTACTGTATCCTATTA+GGG - tig0001526:120752-120771 Msa1337480:CDS 25.0%
! ACAAACAAATAAACCCTAAT+AGG + tig0001526:120768-120787 None:intergenic 25.0%
! AAATACTAACTGGACTAAAA+CGG + tig0001526:121107-121126 None:intergenic 25.0%
! GTAATACTCGTTATTAATGT+TGG - tig0001526:121478-121497 Msa1337480:intron 25.0%
! TTATGCAACGATAATCAAAA+TGG + tig0001526:121568-121587 None:intergenic 25.0%
! GATTGTAATAGCTATTTGAA+TGG - tig0001526:121632-121651 Msa1337480:intron 25.0%
!!! GCTAGCTTTAGTTTTTTTTT+TGG - tig0001526:121688-121707 Msa1337480:intron 25.0%
! AAAACAAATAGCAGAAATCA+GGG + tig0001526:121988-122007 None:intergenic 25.0%
!!! GATTCAGTAATATTTTGGTT+TGG - tig0001526:122015-122034 Msa1337480:CDS 25.0%
!!! TTCAGTAATATTTTGGTTTG+GGG - tig0001526:122017-122036 Msa1337480:CDS 25.0%
!!! ACTTTTTAGTTGGAGTAAAA+AGG + tig0001526:122082-122101 None:intergenic 25.0%
! TTGGAAATAAAAGAACCAAA+TGG + tig0001526:122331-122350 None:intergenic 25.0%
!! CATTCATTTGATAATTTGTG+TGG - tig0001526:122365-122384 Msa1337480:CDS 25.0%
! TTGATGCTCAAATAAATGAA+TGG - tig0001526:122464-122483 Msa1337480:CDS 25.0%
! GAAATTTATTACCTACAAGT+TGG - tig0001526:122567-122586 Msa1337480:intron 25.0%
! GGAGATAACACATAATTTAA+GGG + tig0001526:122629-122648 None:intergenic 25.0%
! TGGAGATAACACATAATTTA+AGG + tig0001526:122630-122649 None:intergenic 25.0%
! CTTGAATCTAAATCTAATAG+AGG + tig0001526:122777-122796 None:intergenic 25.0%
! CTCTATTAGATTTAGATTCA+AGG - tig0001526:122775-122794 Msa1337480:CDS 25.0%
!!! AAGAAAGTATTAAGTTAGAG+AGG - tig0001526:122832-122851 Msa1337480:intron 25.0%
!! ACACCACATTATTTATTTCT+CGG - tig0001526:122979-122998 Msa1337480:CDS 25.0%
! TTTAGTAAAAGAAAGTAGCA+GGG + tig0001526:123020-123039 None:intergenic 25.0%
!! TTTTAGTAAAAGAAAGTAGC+AGG + tig0001526:123021-123040 None:intergenic 25.0%
!! TAATTTAGGTTCTTGCATAT+AGG - tig0001526:123177-123196 Msa1337480:CDS 25.0%
! TTTACGTGTATAACTTTGAT+AGG - tig0001526:123217-123236 Msa1337480:CDS 25.0%
! TTTACTGTTAAAGATCATAG+AGG - tig0001526:123997-124016 Msa1337480:intron 25.0%
! CTTCTTATACACTGTATAAA+GGG + tig0001526:124115-124134 None:intergenic 25.0%
! AATATAATAAAATGGGTGGA+AGG + tig0001526:124326-124345 None:intergenic 25.0%
!! AATCAGAAAAGTGCATATTA+TGG - tig0001526:124706-124725 Msa1337480:intron 25.0%
! GACTTTCCCAAAAAAATTAA+AGG + tig0001526:124800-124819 None:intergenic 25.0%
! TTAGGAACCAAATAATTGAA+TGG - tig0001526:125069-125088 Msa1337480:intron 25.0%
! TAAGAAATATGATAGAACAG+GGG - tig0001526:125111-125130 Msa1337480:intron 25.0%
! GGAATACAATGATAAAAAAG+GGG + tig0001526:125208-125227 None:intergenic 25.0%
! GGGAATACAATGATAAAAAA+GGG + tig0001526:125209-125228 None:intergenic 25.0%
! AAATGATACATTAGGATTCA+AGG + tig0001526:125353-125372 None:intergenic 25.0%
! ATGTATATGCAAATTTCTCT+TGG + tig0001526:125580-125599 None:intergenic 25.0%
! AGAACATCAGAAAAATCTTA+AGG + tig0001526:126313-126332 None:intergenic 25.0%
!! ATGTTATCTCATTTTCATTG+TGG - tig0001526:126654-126673 Msa1337480:intron 25.0%
ACAAAATCGATTATGGGTAA+TGG + tig0001526:120412-120431 None:intergenic 30.0%
AAAGATAACTTAGCAGTGTT+TGG + tig0001526:120469-120488 None:intergenic 30.0%
AAGGAAAAATAACAGAAAGC+CGG + tig0001526:120530-120549 None:intergenic 30.0%
!! AGTGAAGTATTGAAGAGTAA+AGG + tig0001526:120549-120568 None:intergenic 30.0%
GTAAAAGAAACGAAGTGTAA+CGG + tig0001526:120599-120618 None:intergenic 30.0%
AATGTCCAACTTAACAATCT+CGG + tig0001526:121211-121230 None:intergenic 30.0%
TGAAAACTCACACAAACAAA+GGG + tig0001526:121268-121287 None:intergenic 30.0%
TTGAAAACTCACACAAACAA+AGG + tig0001526:121269-121288 None:intergenic 30.0%
AATTGACAACTGACAACAAA+AGG + tig0001526:121454-121473 None:intergenic 30.0%
ATATCAGAAAGAATCTTCCT+AGG + tig0001526:121595-121614 None:intergenic 30.0%
!!! ACTCGAGTTTCTTTTTTCTA+AGG - tig0001526:121724-121743 Msa1337480:intron 30.0%
GAAAACAAATAGCAGAAATC+AGG + tig0001526:121989-122008 None:intergenic 30.0%
!!! TCAGTAATATTTTGGTTTGG+GGG - tig0001526:122018-122037 Msa1337480:CDS 30.0%
!! GGTTCTTTTATTTCCAATCT+TGG - tig0001526:122334-122353 Msa1337480:intron 30.0%
ACTGTGTTAAGTGTTAACTA+TGG - tig0001526:122711-122730 Msa1337480:CDS 30.0%
TGTTAAGTGTTAACTATGGT+TGG - tig0001526:122715-122734 Msa1337480:CDS 30.0%
AAGTATTAAGTTAGAGAGGT+AGG - tig0001526:122836-122855 Msa1337480:intron 30.0%
TTTGTAGTTTCATTGTTGGT+TGG + tig0001526:122879-122898 None:intergenic 30.0%
AACCAACAATGAAACTACAA+AGG - tig0001526:122878-122897 Msa1337480:intron 30.0%
!! CAAAGGCATTTCTATTTCAA+AGG - tig0001526:122895-122914 Msa1337480:intron 30.0%
TTCTATTTCAAAGGATGATG+TGG - tig0001526:122904-122923 Msa1337480:CDS 30.0%
TTAATGTCTCAAGGAAATCA+GGG + tig0001526:123136-123155 None:intergenic 30.0%
TTTAATGTCTCAAGGAAATC+AGG + tig0001526:123137-123156 None:intergenic 30.0%
TAAAGTGTACAGTAAGTCAT+TGG - tig0001526:123342-123361 Msa1337480:CDS 30.0%
TAAGAAGAAACTACGTGTTA+AGG - tig0001526:123375-123394 Msa1337480:intron 30.0%
!! TCGAGTTTTATACATGATTC+AGG + tig0001526:123703-123722 None:intergenic 30.0%
ACAATGAAGATGATGAAGAT+TGG - tig0001526:123749-123768 Msa1337480:intron 30.0%
TATTTACAGACAATTCAAGC+TGG - tig0001526:123887-123906 Msa1337480:intron 30.0%
GCTTCTTATACACTGTATAA+AGG + tig0001526:124116-124135 None:intergenic 30.0%
TTAAGGATCAACAGAAATTG+CGG - tig0001526:124259-124278 Msa1337480:intron 30.0%
AAATTGCGGAATGTAAGTTT+AGG - tig0001526:124273-124292 Msa1337480:intron 30.0%
TCCATCTTTATCTTGAATGT+AGG - tig0001526:124299-124318 Msa1337480:intron 30.0%
ACCTACATTCAAGATAAAGA+TGG + tig0001526:124303-124322 None:intergenic 30.0%
ACTTTCAATGGAAAAAATGC+AGG + tig0001526:124579-124598 None:intergenic 30.0%
AAACTACAAACTCTGAACAT+TGG + tig0001526:124736-124755 None:intergenic 30.0%
!!! TAATTTTTTTGGGAAAGTCC+AGG - tig0001526:124801-124820 Msa1337480:intron 30.0%
ATCTGAAAATGAACTTCATG+TGG - tig0001526:124930-124949 Msa1337480:intron 30.0%
! AGAGTATTCTCTATTGTGAA+GGG + tig0001526:125160-125179 None:intergenic 30.0%
! TAGAGTATTCTCTATTGTGA+AGG + tig0001526:125161-125180 None:intergenic 30.0%
GGGGAATACAATGATAAAAA+AGG + tig0001526:125210-125229 None:intergenic 30.0%
TGCTATTGTTAAAACCTGAA+AGG + tig0001526:125691-125710 None:intergenic 30.0%
!! TTCAGGTTTTAACAATAGCA+TGG - tig0001526:125691-125710 Msa1337480:intron 30.0%
!! ATGATCATTTCTAGAGCTTT+GGG + tig0001526:125825-125844 None:intergenic 30.0%
!! TATGATCATTTCTAGAGCTT+TGG + tig0001526:125826-125845 None:intergenic 30.0%
ACCAATCATCAAAAGGATTT+GGG + tig0001526:125931-125950 None:intergenic 30.0%
TTGTTTGACCAATCATCAAA+AGG + tig0001526:125938-125957 None:intergenic 30.0%
AGTTAGATGAATAGGTTGTT+TGG - tig0001526:126260-126279 Msa1337480:five_prime_UTR 30.0%
GTTAGATGAATAGGTTGTTT+GGG - tig0001526:126261-126280 Msa1337480:five_prime_UTR 30.0%
TCAAAAACAGATTACAATCG+CGG + tig0001526:126474-126493 None:intergenic 30.0%
TAAAACCAGAACAAATGGAA+AGG + tig0001526:126524-126543 None:intergenic 30.0%
!!! TTTCCATTTGTTCTGGTTTT+AGG - tig0001526:126523-126542 Msa1337480:five_prime_UTR 30.0%
!!! TTCCATTTGTTCTGGTTTTA+GGG - tig0001526:126524-126543 Msa1337480:five_prime_UTR 30.0%
AGTTATATCTCAAATCTGAC+AGG + tig0001526:126571-126590 None:intergenic 30.0%
AATATCTCTACGTGCAATCA+CGG + tig0001526:120275-120294 None:intergenic 35.0%
GTATTATTTGTGGTCTACTC+TGG + tig0001526:120350-120369 None:intergenic 35.0%
!! AATGGATTATTTGCCTGAGT+TGG + tig0001526:120394-120413 None:intergenic 35.0%
AGGACGACAAAATCGATTAT+GGG + tig0001526:120418-120437 None:intergenic 35.0%
AAGGACGACAAAATCGATTA+TGG + tig0001526:120419-120438 None:intergenic 35.0%
ACTGCTAAGTTATCTTTCTC+AGG - tig0001526:120472-120491 Msa1337480:three_prime_UTR 35.0%
! AGTGAGACGGAGATATTTTA+TGG + tig0001526:120576-120595 None:intergenic 35.0%
AAGATTAGAGTAGGTGATGA+TGG - tig0001526:120820-120839 Msa1337480:CDS 35.0%
CAATACCGAGATTGTTAAGT+TGG - tig0001526:121203-121222 Msa1337480:CDS 35.0%
!! GTTAAGTTGGACATTTGTTG+TGG - tig0001526:121216-121235 Msa1337480:intron 35.0%
! TTTTTCACCTACTTCCAACT+GGG + tig0001526:121312-121331 None:intergenic 35.0%
!!! TTTTTTCACCTACTTCCAAC+TGG + tig0001526:121313-121332 None:intergenic 35.0%
TTAATGACCGACTAATCAGT+TGG - tig0001526:121413-121432 Msa1337480:intron 35.0%
TGGTAATCCAACTGATTAGT+CGG + tig0001526:121423-121442 None:intergenic 35.0%
ACTAATCAGTTGGATTACCA+TGG - tig0001526:121423-121442 Msa1337480:intron 35.0%
TGTAATTGTTGAAGCTCTCA+AGG - tig0001526:121891-121910 Msa1337480:intron 35.0%
CTTACAACTCTACGAAGAAT+AGG + tig0001526:121952-121971 None:intergenic 35.0%
!!! TAATATTTTGGTTTGGGGGT+GGG - tig0001526:122022-122041 Msa1337480:CDS 35.0%
!! CGGGAAAATGACTTTTTAGT+TGG + tig0001526:122092-122111 None:intergenic 35.0%
TTTAAGAAGGGACATTATGC+GGG + tig0001526:122111-122130 None:intergenic 35.0%
GTTTAAGAAGGGACATTATG+CGG + tig0001526:122112-122131 None:intergenic 35.0%
TATGACATGGCGTTTAAGAA+GGG + tig0001526:122123-122142 None:intergenic 35.0%
ATATGACATGGCGTTTAAGA+AGG + tig0001526:122124-122143 None:intergenic 35.0%
! TTTGATTTCAGTGCTCCATT+TGG - tig0001526:122313-122332 Msa1337480:intron 35.0%
!! TGAATGGTACTGATTGAAAC+AGG - tig0001526:122480-122499 Msa1337480:CDS 35.0%
! GAAATTGGTTTCCAACTTGT+AGG + tig0001526:122581-122600 None:intergenic 35.0%
ATTTGTCCATAGACTAAGCA+AGG - tig0001526:122664-122683 Msa1337480:CDS 35.0%
! ATCCTTTAAGCTAGCTTGAA+AGG - tig0001526:122807-122826 Msa1337480:intron 35.0%
TGCCTTTGTAGTTTCATTGT+TGG + tig0001526:122883-122902 None:intergenic 35.0%
GTGCCGAGAAATAAATAATG+TGG + tig0001526:122985-123004 None:intergenic 35.0%
ATGCAAGAACCTAAATTAGC+TGG + tig0001526:123175-123194 None:intergenic 35.0%
CGTGTATAACTTTGATAGGA+TGG - tig0001526:123221-123240 Msa1337480:CDS 35.0%
AACTTTGATAGGATGGACAT+TGG - tig0001526:123228-123247 Msa1337480:CDS 35.0%
CTTACTGTACACTTTAAGCT+AGG + tig0001526:123338-123357 None:intergenic 35.0%
ATTTAATTCATTGGCGAGTC+TGG - tig0001526:123479-123498 Msa1337480:intron 35.0%
TCAACCAGAACAACATGAAT+TGG + tig0001526:123649-123668 None:intergenic 35.0%
CATTGTTAAAATCGCCTTCA+AGG + tig0001526:123735-123754 None:intergenic 35.0%
TCATTCCAAGCCTGAATTTA+CGG + tig0001526:123921-123940 None:intergenic 35.0%
TAAATTCAGGCTTGGAATGA+AGG - tig0001526:123921-123940 Msa1337480:intron 35.0%
AAGATCATAGAGGAGAATGT+AGG - tig0001526:124007-124026 Msa1337480:intron 35.0%
AGATCATAGAGGAGAATGTA+GGG - tig0001526:124008-124027 Msa1337480:intron 35.0%
GTATGGAGATTGGAGAAAAT+AGG - tig0001526:124162-124181 Msa1337480:intron 35.0%
GAGATTGGAGAAAATAGGTA+AGG - tig0001526:124167-124186 Msa1337480:intron 35.0%
TTGGAGAAAATAGGTAAGGA+TGG - tig0001526:124171-124190 Msa1337480:intron 35.0%
TGGAGAAAATAGGTAAGGAT+GGG - tig0001526:124172-124191 Msa1337480:intron 35.0%
AAGTCGAAGAAAGTCTTCAA+CGG + tig0001526:124235-124254 None:intergenic 35.0%
TTAGAACACATGTCTTTGCA+TGG + tig0001526:124410-124429 None:intergenic 35.0%
CCAACATTTCTTGTATCTTC+TGG + tig0001526:124456-124475 None:intergenic 35.0%
CCAGAAGATACAAGAAATGT+TGG - tig0001526:124453-124472 Msa1337480:intron 35.0%
AGAATTGCTCTCCTGTTATA+AGG + tig0001526:124512-124531 None:intergenic 35.0%
TTCTCTTAGCGATAATCAGA+AGG - tig0001526:124542-124561 Msa1337480:intron 35.0%
AACACATGCTCAACTTTCAA+TGG + tig0001526:124591-124610 None:intergenic 35.0%
!! TTCCTTTGAAGCTCTCTATT+AGG - tig0001526:124754-124773 Msa1337480:intron 35.0%
TTCCTAATAGAGAGCTTCAA+AGG + tig0001526:124759-124778 None:intergenic 35.0%
TGAAGCTCTCTATTAGGAAT+AGG - tig0001526:124760-124779 Msa1337480:intron 35.0%
GAAGCTCTCTATTAGGAATA+GGG - tig0001526:124761-124780 Msa1337480:intron 35.0%
CGTAGATTCATTGGTGAAAA+AGG - tig0001526:124828-124847 Msa1337480:intron 35.0%
! TGAAAAAGGCATACGACAAT+TGG - tig0001526:124842-124861 Msa1337480:intron 35.0%
! GAAAAAGGCATACGACAATT+GGG - tig0001526:124843-124862 Msa1337480:intron 35.0%
GTGGAGTCAATTGATTATGA+TGG - tig0001526:124949-124968 Msa1337480:intron 35.0%
GAGTCAATTGATTATGATGG+CGG - tig0001526:124952-124971 Msa1337480:intron 35.0%
TGTTCAGAAGTAACAGACAT+GGG + tig0001526:125009-125028 None:intergenic 35.0%
AGTATTCTCTATTGTGAAGG+GGG + tig0001526:125158-125177 None:intergenic 35.0%
GAGTATTCTCTATTGTGAAG+GGG + tig0001526:125159-125178 None:intergenic 35.0%
! AGAAACCAAATTTGAGACAC+AGG + tig0001526:125454-125473 None:intergenic 35.0%
TATGCAAATTTCTCTTGGAC+AGG + tig0001526:125575-125594 None:intergenic 35.0%
ACATCATACACAATCAGCAA+AGG + tig0001526:125636-125655 None:intergenic 35.0%
TCCATATACATTCTCCTTTC+AGG - tig0001526:125674-125693 Msa1337480:intron 35.0%
ACCTGAAAGGAGAATGTATA+TGG + tig0001526:125678-125697 None:intergenic 35.0%
CTGTCTAACGACCATTTATT+AGG - tig0001526:125785-125804 Msa1337480:intron 35.0%
AGAAATGATCATAGCACAGT+AGG - tig0001526:125833-125852 Msa1337480:intron 35.0%
GAAATGATCATAGCACAGTA+GGG - tig0001526:125834-125853 Msa1337480:intron 35.0%
CCAATCATCAAAAGGATTTG+GGG + tig0001526:125930-125949 None:intergenic 35.0%
GACCAATCATCAAAAGGATT+TGG + tig0001526:125932-125951 None:intergenic 35.0%
! TTGATGATTGGTCAAACAAC+AGG - tig0001526:125939-125958 Msa1337480:CDS 35.0%
! TGATGATTGGTCAAACAACA+GGG - tig0001526:125940-125959 Msa1337480:CDS 35.0%
!!! TGTTGATGACTTCTTTTCAG+AGG - tig0001526:125970-125989 Msa1337480:exon 35.0%
GTATCTCATTACTTCTAACG+CGG + tig0001526:126003-126022 None:intergenic 35.0%
ATAACCATCCTCAGTATTCA+TGG + tig0001526:126083-126102 None:intergenic 35.0%
GATAGAGGAGTTAGATGAAT+AGG - tig0001526:126252-126271 Msa1337480:five_prime_UTR 35.0%
TTGTTTGGGCAAATGATAGT+AGG - tig0001526:126275-126294 Msa1337480:five_prime_UTR 35.0%
AACCAAGAATGTTGATACCA+TGG + tig0001526:126379-126398 None:intergenic 35.0%
TGCTGTAAAATCAGATACAC+AGG + tig0001526:126406-126425 None:intergenic 35.0%
!!! GTACAGTTTTGTTCAAGCTT+AGG - tig0001526:126443-126462 Msa1337480:five_prime_UTR 35.0%
!! TGATAGAGGAGAGTATTAAC+AGG + tig0001526:126501-126520 None:intergenic 35.0%
AACAAATGGAAAGGTGATAG+AGG + tig0001526:126515-126534 None:intergenic 35.0%
TATCACCTTTCCATTTGTTC+TGG - tig0001526:126516-126535 Msa1337480:five_prime_UTR 35.0%
!!! TCCATTTGTTCTGGTTTTAG+GGG - tig0001526:126525-126544 Msa1337480:five_prime_UTR 35.0%
ACTCAATGACTTTCCAACTC+AGG - tig0001526:120378-120397 Msa1337480:three_prime_UTR 40.0%
AGAGAAGAGAGAGAGAAAGA+AGG + tig0001526:120438-120457 None:intergenic 40.0%
! GAGACGGAGATATTTTATGG+TGG + tig0001526:120573-120592 None:intergenic 40.0%
AATTAGTACCTAGCAAGAGC+AGG + tig0001526:121028-121047 None:intergenic 40.0%
AGGATCTTAGATTCAATCCC+GGG + tig0001526:121245-121264 None:intergenic 40.0%
GAGGATCTTAGATTCAATCC+CGG + tig0001526:121246-121265 None:intergenic 40.0%
AAACTCACACAAACAAAGGG+AGG + tig0001526:121265-121284 None:intergenic 40.0%
CCAACACGACAAAACATCTT+TGG + tig0001526:121373-121392 None:intergenic 40.0%
! CCAAAGATGTTTTGTCGTGT+TGG - tig0001526:121370-121389 Msa1337480:intron 40.0%
GACAACAAAAGGTTTGACCA+TGG + tig0001526:121443-121462 None:intergenic 40.0%
TATCGTTGCATAATGCACCT+AGG - tig0001526:121575-121594 Msa1337480:intron 40.0%
GCTATTTGAATGGCATAGCA+TGG - tig0001526:121642-121661 Msa1337480:intron 40.0%
CAACCATGGAATTCTGCATT+TGG - tig0001526:121666-121685 Msa1337480:intron 40.0%
TAGCCAAATGCAGAATTCCA+TGG + tig0001526:121672-121691 None:intergenic 40.0%
AATTGTTGAAGCTCTCAAGG+TGG - tig0001526:121894-121913 Msa1337480:intron 40.0%
!!! GTAATATTTTGGTTTGGGGG+TGG - tig0001526:122021-122040 Msa1337480:CDS 40.0%
!!! AATATTTTGGTTTGGGGGTG+GGG - tig0001526:122023-122042 Msa1337480:CDS 40.0%
TTAAACGCCATGTCATATCG+TGG - tig0001526:122126-122145 Msa1337480:intron 40.0%
ACTGTCATGCTGTGAACAAT+AGG + tig0001526:122278-122297 None:intergenic 40.0%
GAATGATGTCACACCAAGAT+TGG + tig0001526:122350-122369 None:intergenic 40.0%
TTGCAACCTTGCTTAGTCTA+TGG + tig0001526:122673-122692 None:intergenic 40.0%
! CTCCTTTCAAGCTAGCTTAA+AGG + tig0001526:122812-122831 None:intergenic 40.0%
! GATGGTGGCATTAATTGAAG+TGG + tig0001526:123440-123459 None:intergenic 40.0%
TCTTCCCCTAAAAGGATTGA+AGG - tig0001526:123532-123551 Msa1337480:intron 40.0%
! AGGACCTTCAATCCTTTTAG+GGG + tig0001526:123539-123558 None:intergenic 40.0%
! CAGGACCTTCAATCCTTTTA+GGG + tig0001526:123540-123559 None:intergenic 40.0%
! TCAGGACCTTCAATCCTTTT+AGG + tig0001526:123541-123560 None:intergenic 40.0%
AAAAGGATTGAAGGTCCTGA+TGG - tig0001526:123541-123560 Msa1337480:intron 40.0%
GAAACTTGCGGCTTCAATTT+AGG - tig0001526:123566-123585 Msa1337480:intron 40.0%
! ACTTTTCCTCCTGTGAATAG+AGG + tig0001526:123607-123626 None:intergenic 40.0%
TCTATTCACAGGAGGAAAAG+TGG - tig0001526:123606-123625 Msa1337480:intron 40.0%
CATGGCTTTCAAATTCCTCT+TGG + tig0001526:123777-123796 None:intergenic 40.0%
AGAGGAATTTGAAAGCCATG+TGG - tig0001526:123777-123796 Msa1337480:intron 40.0%
TCAACAAAGGTCTCTTTCCT+TGG + tig0001526:123813-123832 None:intergenic 40.0%
GGAAAGAGACCTTTGTTGAA+CGG - tig0001526:123814-123833 Msa1337480:intron 40.0%
GAAAGAGACCTTTGTTGAAC+GGG - tig0001526:123815-123834 Msa1337480:intron 40.0%
AAAGAGACCTTTGTTGAACG+GGG - tig0001526:123816-123835 Msa1337480:intron 40.0%
CAGACAATTCAAGCTGGATA+AGG - tig0001526:123893-123912 Msa1337480:intron 40.0%
!! ATGAAGGTTGCATCTGGTTT+TGG - tig0001526:123937-123956 Msa1337480:intron 40.0%
AACAGTAAAAGCCACTGTCT+TGG + tig0001526:123986-124005 None:intergenic 40.0%
!! AGAAGGGAAAGCATTGAAGT+TGG + tig0001526:124053-124072 None:intergenic 40.0%
AAGCATTATCCTCCTGCATT+GGG - tig0001526:124132-124151 Msa1337480:intron 40.0%
! TGAAGACTTTCTTCGACTTG+TGG - tig0001526:124236-124255 Msa1337480:intron 40.0%
! CTTTCTTCGACTTGTGGTTA+AGG - tig0001526:124242-124261 Msa1337480:intron 40.0%
TTAATGTAGATCCTTGGGAG+CGG - tig0001526:124351-124370 Msa1337480:intron 40.0%
CGGTATGTCAAACAAGATGT+GGG - tig0001526:124371-124390 Msa1337480:CDS 40.0%
! GCAAAGACATGTGTTCTAAG+CGG - tig0001526:124411-124430 Msa1337480:intron 40.0%
! CAAAGACATGTGTTCTAAGC+GGG - tig0001526:124412-124431 Msa1337480:intron 40.0%
TGAGCATGTGTTTATGTTGC+TGG - tig0001526:124599-124618 Msa1337480:intron 40.0%
GTTCAGAAGTAACAGACATG+GGG + tig0001526:125008-125027 None:intergenic 40.0%
CTGTTCAGAAGTAACAGACA+TGG + tig0001526:125010-125029 None:intergenic 40.0%
ATTAATTCAGCGATGCCAGT+TGG - tig0001526:125033-125052 Msa1337480:intron 40.0%
AGGAAACAGAAACGCTGTTA+GGG + tig0001526:125333-125352 None:intergenic 40.0%
AAGGAAACAGAAACGCTGTT+AGG + tig0001526:125334-125353 None:intergenic 40.0%
TCAAAAGAAAAGGAGAAGGG+AGG + tig0001526:125410-125429 None:intergenic 40.0%
CGCTCAAAAGAAAAGGAGAA+GGG + tig0001526:125413-125432 None:intergenic 40.0%
TCGCTCAAAAGAAAAGGAGA+AGG + tig0001526:125414-125433 None:intergenic 40.0%
GTGACATCGCTCAAAAGAAA+AGG + tig0001526:125420-125439 None:intergenic 40.0%
AGTCACCTGTGTCTCAAATT+TGG - tig0001526:125446-125465 Msa1337480:intron 40.0%
! TTAACAATAGCATGGTGACG+AGG - tig0001526:125699-125718 Msa1337480:intron 40.0%
AGAGCTGGAATTTCCAATCA+AGG + tig0001526:125738-125757 None:intergenic 40.0%
TGATTGGAAATTCCAGCTCT+CGG - tig0001526:125738-125757 Msa1337480:intron 40.0%
! GGTGAGCATTGCCTAATAAA+TGG + tig0001526:125799-125818 None:intergenic 40.0%
!! CATTTCTAGAGCTTTGGGAT+TGG + tig0001526:125820-125839 None:intergenic 40.0%
!! CCTGAAGTTGATGATTGAGA+AGG + tig0001526:125872-125891 None:intergenic 40.0%
CCTTCTCAATCATCAACTTC+AGG - tig0001526:125869-125888 Msa1337480:intron 40.0%
!! CCCCAAATCCTTTTGATGAT+TGG - tig0001526:125927-125946 Msa1337480:CDS 40.0%
TCATCCTTCCATGAATACTG+AGG - tig0001526:126072-126091 Msa1337480:intron 40.0%
TAGGAGATGGCATGAATGAT+GGG + tig0001526:126111-126130 None:intergenic 40.0%
ATAGGAGATGGCATGAATGA+TGG + tig0001526:126112-126131 None:intergenic 40.0%
! ATACCATGGACTGCACAATT+TGG + tig0001526:126365-126384 None:intergenic 40.0%
GTCCATGGTATCAACATTCT+TGG - tig0001526:126374-126393 Msa1337480:five_prime_UTR 40.0%
!!! CCATTTGTTCTGGTTTTAGG+GGG - tig0001526:126526-126545 Msa1337480:five_prime_UTR 40.0%
TCTCAAATCTGACAGGTGTT+CGG + tig0001526:126564-126583 None:intergenic 40.0%
AACAGAAAGCCGGAAAGTGA+CGG + tig0001526:120520-120539 None:intergenic 45.0%
ATGATCAGCCTGAACGAAAG+AGG - tig0001526:121002-121021 Msa1337480:CDS 45.0%
TCGGTATTGTCAACTGAGCT+AGG + tig0001526:121192-121211 None:intergenic 45.0%
!! GGACATTTGTTGTGGTTACC+CGG - tig0001526:121224-121243 Msa1337480:intron 45.0%
!! GACATTTGTTGTGGTTACCC+GGG - tig0001526:121225-121244 Msa1337480:intron 45.0%
CTACTCTACTGTATCCCAGT+TGG - tig0001526:121295-121314 Msa1337480:intron 45.0%
ACTGTATCCCAGTTGGAAGT+AGG - tig0001526:121302-121321 Msa1337480:intron 45.0%
!!! ATATTTTGGTTTGGGGGTGG+GGG - tig0001526:122024-122043 Msa1337480:CDS 45.0%
CCATGTCATATCGTGGTCTT+CGG - tig0001526:122133-122152 Msa1337480:intron 45.0%
GAAACAGGTGAGTGAAGAAG+TGG - tig0001526:122495-122514 Msa1337480:CDS 45.0%
TTAGGTCCTGCAAGACTTAG+TGG - tig0001526:122535-122554 Msa1337480:CDS 45.0%
!! TGTTGGTTGGCCTCTTTCTA+CGG + tig0001526:122866-122885 None:intergenic 45.0%
AAGAAAGTAGCAGGGTCTTG+TGG + tig0001526:123012-123031 None:intergenic 45.0%
ATGTCTCAAGGAAATCAGGG+AGG + tig0001526:123133-123152 None:intergenic 45.0%
TAGGCTCAAATCGGAGAATG+GGG + tig0001526:123311-123330 None:intergenic 45.0%
GTAGGCTCAAATCGGAGAAT+GGG + tig0001526:123312-123331 None:intergenic 45.0%
ACACTTTAAGCTAGGCAGGT+AGG + tig0001526:123330-123349 None:intergenic 45.0%
CTGTACACTTTAAGCTAGGC+AGG + tig0001526:123334-123353 None:intergenic 45.0%
ATTCCAGGTCTTCCCCTAAA+AGG - tig0001526:123524-123543 Msa1337480:intron 45.0%
!! AATCCTTTTAGGGGAAGACC+TGG + tig0001526:123530-123549 None:intergenic 45.0%
GTCCTGATGGTAGAAACTTG+CGG - tig0001526:123554-123573 Msa1337480:intron 45.0%
TGAATAGAGGAAGAGCCAGT+CGG + tig0001526:123594-123613 None:intergenic 45.0%
TTCACAGGAGGAAAAGTGGA+AGG - tig0001526:123610-123629 Msa1337480:intron 45.0%
GGCTCCAATTCATGTTGTTC+TGG - tig0001526:123642-123661 Msa1337480:intron 45.0%
! GTTCTGGTTGATTCCAACAG+TGG - tig0001526:123658-123677 Msa1337480:intron 45.0%
TGATTCCAACAGTGGAAGTG+TGG - tig0001526:123666-123685 Msa1337480:intron 45.0%
TGTTACCACACTTCCACTGT+TGG + tig0001526:123674-123693 None:intergenic 45.0%
! AGTGGAAGTGTGGTAACATC+TGG - tig0001526:123676-123695 Msa1337480:intron 45.0%
TGATGAAGATTGGAGCCAAG+AGG - tig0001526:123759-123778 Msa1337480:intron 45.0%
AAGGAGGGAGTTGGAACATT+AGG - tig0001526:123856-123875 Msa1337480:intron 45.0%
AGGAGGGAGTTGGAACATTA+GGG - tig0001526:123857-123876 Msa1337480:intron 45.0%
GGATAAGGAGCCGTAAATTC+AGG - tig0001526:123908-123927 Msa1337480:intron 45.0%
CTTGGAATGAAGGTTGCATC+TGG - tig0001526:123931-123950 Msa1337480:intron 45.0%
! GGTGTTGTAGGTTGCAAGAA+GGG + tig0001526:124069-124088 None:intergenic 45.0%
!! TGGTGTTGTAGGTTGCAAGA+AGG + tig0001526:124070-124089 None:intergenic 45.0%
! GAAGCATTATCCTCCTGCAT+TGG - tig0001526:124131-124150 Msa1337480:intron 45.0%
CATACATCATCACCCAATGC+AGG + tig0001526:124147-124166 None:intergenic 45.0%
! CTGCATTGGGTGATGATGTA+TGG - tig0001526:124145-124164 Msa1337480:intron 45.0%
! GGGTGATGATGTATGGAGAT+TGG - tig0001526:124152-124171 Msa1337480:intron 45.0%
GCGGTATGTCAAACAAGATG+TGG - tig0001526:124370-124389 Msa1337480:CDS 45.0%
CCAATGAATCTACGTACACC+TGG + tig0001526:124822-124841 None:intergenic 45.0%
CCAGGTGTACGTAGATTCAT+TGG - tig0001526:124819-124838 Msa1337480:intron 45.0%
GTACGATGGCAAATCACTTG+TGG - tig0001526:124879-124898 Msa1337480:intron 45.0%
AGAAGTAACAGACATGGGGA+GGG + tig0001526:125004-125023 None:intergenic 45.0%
AACAATCGCTTACCTCCAAC+TGG + tig0001526:125051-125070 None:intergenic 45.0%
GTTGGAGGTAAGCGATTGTT+AGG - tig0001526:125051-125070 Msa1337480:intron 45.0%
TGGAATTTCCAATCAAGGCC+TGG + tig0001526:125733-125752 None:intergenic 45.0%
ATCAAAATGACTCCGAGAGC+TGG + tig0001526:125753-125772 None:intergenic 45.0%
TGATCATAGCACAGTAGGGT+TGG - tig0001526:125838-125857 Msa1337480:intron 45.0%
! TCATCAAAAGGATTTGGGGC+AGG + tig0001526:125926-125945 None:intergenic 45.0%
TTGGTCAAACAACAGGGACA+AGG - tig0001526:125946-125965 Msa1337480:CDS 45.0%
TGGTCAAACAACAGGGACAA+GGG - tig0001526:125947-125966 Msa1337480:CDS 45.0%
! TTGCTTCGCCTTTTCAGCAT+GGG - tig0001526:126046-126065 Msa1337480:intron 45.0%
CCATCCTCAGTATTCATGGA+AGG + tig0001526:126079-126098 None:intergenic 45.0%
CCTTCCATGAATACTGAGGA+TGG - tig0001526:126076-126095 Msa1337480:intron 45.0%
TGAAGATCAAGGCAGCAATG+AGG - tig0001526:126185-126204 Msa1337480:intron 45.0%
GAAAGATAGCAGCTGAGAAG+CGG - tig0001526:126224-126243 Msa1337480:intron 45.0%
AAAGATAGCAGCTGAGAAGC+GGG - tig0001526:126225-126244 Msa1337480:intron 45.0%
! CATGGACTGCACAATTTGGT+TGG + tig0001526:126361-126380 None:intergenic 45.0%
CAACCAAATTGTGCAGTCCA+TGG - tig0001526:126359-126378 Msa1337480:five_prime_UTR 45.0%
CCCCCTAAAACCAGAACAAA+TGG + tig0001526:126529-126548 None:intergenic 45.0%
! TGTGGATTGCACCAGTACAT+CGG - tig0001526:126672-126691 Msa1337480:intron 45.0%
!! TTAATTTAAATTTAATTCAT+TGG - tig0001526:123470-123489 Msa1337480:intron 5.0%
!! AAAAATAAGATATTAAAAAA+TGG + tig0001526:124090-124109 None:intergenic 5.0%
!!! TTTAAAATATTTTTAGTATT+TGG + tig0001526:125544-125563 None:intergenic 5.0%
! GAAAGTGACGGGGAGTCTAA+CGG + tig0001526:120508-120527 None:intergenic 50.0%
! TTAGACTCCCCGTCACTTTC+CGG - tig0001526:120508-120527 Msa1337480:three_prime_UTR 50.0%
ACAGAAAGCCGGAAAGTGAC+GGG + tig0001526:120519-120538 None:intergenic 50.0%
! CGAAGTGTAACGGAGTGAGA+CGG + tig0001526:120589-120608 None:intergenic 50.0%
TTTCCCCATACTTGCTCCGT+CGG + tig0001526:120957-120976 None:intergenic 50.0%
ACGGAGCAAGTATGGGGAAA+AGG - tig0001526:120957-120976 Msa1337480:CDS 50.0%
CGGAGCAAGTATGGGGAAAA+GGG - tig0001526:120958-120977 Msa1337480:CDS 50.0%
ATCATCTCCACCACCCTCAA+GGG + tig0001526:120984-121003 None:intergenic 50.0%
TGGCATAGCATGGTCAACCA+TGG - tig0001526:121652-121671 Msa1337480:intron 50.0%
CCGAAGACCACGATATGACA+TGG + tig0001526:122136-122155 None:intergenic 50.0%
TGAAGAAGTGGAGCGTGCTT+TGG - tig0001526:122507-122526 Msa1337480:CDS 50.0%
GTCCTGCAAGACTTAGTGGA+AGG - tig0001526:122539-122558 Msa1337480:CDS 50.0%
GACCTTCCACTAAGTCTTGC+AGG + tig0001526:122544-122563 None:intergenic 50.0%
GGTAGGTATCCCGTAGAAAG+AGG - tig0001526:122853-122872 Msa1337480:intron 50.0%
!! GTTGGTTGGCCTCTTTCTAC+GGG + tig0001526:122865-122884 None:intergenic 50.0%
GGAAATCAGGGAGGCAGTAT+TGG + tig0001526:123124-123143 None:intergenic 50.0%
GGTAGGCTCAAATCGGAGAA+TGG + tig0001526:123313-123332 None:intergenic 50.0%
CTAGGCAGGTAGGCTCAAAT+CGG + tig0001526:123320-123339 None:intergenic 50.0%
AGCCGCAAGTTTCTACCATC+AGG + tig0001526:123559-123578 None:intergenic 50.0%
GCTTCAATTTAGGTCCCGAC+TGG - tig0001526:123576-123595 Msa1337480:intron 50.0%
GAATAGAGGAAGAGCCAGTC+GGG + tig0001526:123593-123612 None:intergenic 50.0%
! CTGGCTCTTCCTCTATTCAC+AGG - tig0001526:123595-123614 Msa1337480:intron 50.0%
GCTCTTCCTCTATTCACAGG+AGG - tig0001526:123598-123617 Msa1337480:intron 50.0%
CTCGATGTCGTTGTCCTTGA+AGG - tig0001526:123718-123737 Msa1337480:intron 50.0%
CTTGGCGTTCTTTCACCACA+TGG + tig0001526:123795-123814 None:intergenic 50.0%
CATGTGGTGAAAGAACGCCA+AGG - tig0001526:123793-123812 Msa1337480:intron 50.0%
TGCAGTTCCCCGTTCAACAA+AGG + tig0001526:123826-123845 None:intergenic 50.0%
GGAACTGCAAGTGACACTCA+AGG - tig0001526:123837-123856 Msa1337480:intron 50.0%
ACTGCAAGTGACACTCAAGG+AGG - tig0001526:123840-123859 Msa1337480:intron 50.0%
CTGCAAGTGACACTCAAGGA+GGG - tig0001526:123841-123860 Msa1337480:intron 50.0%
GGAGGGAGTTGGAACATTAG+GGG - tig0001526:123858-123877 Msa1337480:intron 50.0%
AGGAGCCGTAAATTCAGGCT+TGG - tig0001526:123913-123932 Msa1337480:intron 50.0%
CATTCGTGAAGCCAAGACAG+TGG - tig0001526:123972-123991 Msa1337480:intron 50.0%
ACATCATCACCCAATGCAGG+AGG + tig0001526:124144-124163 None:intergenic 50.0%
TGTTTGACATACCGCTCCCA+AGG + tig0001526:124365-124384 None:intergenic 50.0%
TCTGTGCTCATGCAAGTGTG+AGG + tig0001526:124676-124695 None:intergenic 50.0%
GAGCAGGTTGTAGAGTACGA+TGG - tig0001526:124865-124884 Msa1337480:intron 50.0%
CAGAAGTAACAGACATGGGG+AGG + tig0001526:125005-125024 None:intergenic 50.0%
AATTCAGCGATGCCAGTTGG+AGG - tig0001526:125036-125055 Msa1337480:intron 50.0%
TATTGTGAAGGGGGAACCCT+TGG + tig0001526:125149-125168 None:intergenic 50.0%
AGAAAAGGAGAAGGGAGGTG+AGG + tig0001526:125405-125424 None:intergenic 50.0%
TATCCAAGCCAGGCCTTGAT+TGG - tig0001526:125722-125741 Msa1337480:intron 50.0%
TTTCCAATCAAGGCCTGGCT+TGG + tig0001526:125728-125747 None:intergenic 50.0%
! TCAAAAGGATTTGGGGCAGG+TGG + tig0001526:125923-125942 None:intergenic 50.0%
! CTTGCTTCGCCTTTTCAGCA+TGG - tig0001526:126045-126064 Msa1337480:intron 50.0%
GATGACCTCCCATGCTGAAA+AGG + tig0001526:126057-126076 None:intergenic 50.0%
TCGAAGTTCGGCATAGGAGA+TGG + tig0001526:126124-126143 None:intergenic 50.0%
TCCTATGCCGAACTTCGATG+AGG - tig0001526:126126-126145 Msa1337480:intron 50.0%
TCCTCATCGAAGTTCGGCAT+AGG + tig0001526:126130-126149 None:intergenic 50.0%
GAGCGATCCTCATCGAAGTT+CGG + tig0001526:126136-126155 None:intergenic 50.0%
TGTGGGATGGCTGAAGATCA+AGG - tig0001526:126174-126193 Msa1337480:intron 50.0%
AGATCAAGGCAGCAATGAGG+TGG - tig0001526:126188-126207 Msa1337480:intron 50.0%
GATCAAGGCAGCAATGAGGT+GGG - tig0001526:126189-126208 Msa1337480:intron 50.0%
ATCAAGGCAGCAATGAGGTG+GGG - tig0001526:126190-126209 Msa1337480:intron 50.0%
TGCTAAGGAAGCCGATGTAC+TGG + tig0001526:126686-126705 None:intergenic 50.0%
CAGAAAGCCGGAAAGTGACG+GGG + tig0001526:120518-120537 None:intergenic 55.0%
ATGCAGAGACCACCTACCGA+CGG - tig0001526:120938-120957 Msa1337480:CDS 55.0%
ATACTTGCTCCGTCGGTAGG+TGG + tig0001526:120950-120969 None:intergenic 55.0%
ACCTACCGACGGAGCAAGTA+TGG - tig0001526:120949-120968 Msa1337480:CDS 55.0%
CCTACCGACGGAGCAAGTAT+GGG - tig0001526:120950-120969 Msa1337480:CDS 55.0%
CTACCGACGGAGCAAGTATG+GGG - tig0001526:120951-120970 Msa1337480:CDS 55.0%
TATGGGGAAAAGGGCCCTTG+AGG - tig0001526:120967-120986 Msa1337480:CDS 55.0%
ATGGGGAAAAGGGCCCTTGA+GGG - tig0001526:120968-120987 Msa1337480:CDS 55.0%
CATCATCTCCACCACCCTCA+AGG + tig0001526:120985-121004 None:intergenic 55.0%
AGAGCAGGCCTCTTTCGTTC+AGG + tig0001526:121013-121032 None:intergenic 55.0%
GAAAGAGGCCTGCTCTTGCT+AGG - tig0001526:121017-121036 Msa1337480:CDS 55.0%
GAGCGTGCTTTGGCGAAGTT+AGG - tig0001526:122517-122536 Msa1337480:CDS 55.0%
AGGAAAAGTGGAAGGCGAGC+AGG - tig0001526:123618-123637 Msa1337480:intron 55.0%
GGAAAAGTGGAAGGCGAGCA+GGG - tig0001526:123619-123638 Msa1337480:intron 55.0%
GAAAAGTGGAAGGCGAGCAG+GGG - tig0001526:123620-123639 Msa1337480:intron 55.0%
AAAAGTGGAAGGCGAGCAGG+GGG - tig0001526:123621-123640 Msa1337480:intron 55.0%
GTGACACTCAAGGAGGGAGT+TGG - tig0001526:123847-123866 Msa1337480:intron 55.0%
AACCACGTCTATGAGCTGCG+TGG - tig0001526:124486-124505 Msa1337480:intron 55.0%
!! GAGCTGCGTGGCCTTATAAC+AGG - tig0001526:124498-124517 Msa1337480:intron 55.0%
GGCATACGACAATTGGGAGC+AGG - tig0001526:124849-124868 Msa1337480:intron 55.0%
GTAACAGACATGGGGAGGGA+TGG + tig0001526:125000-125019 None:intergenic 55.0%
AGGGGAGAATCACTCCTCCA+AGG - tig0001526:125129-125148 Msa1337480:intron 55.0%
GGGGAGAATCACTCCTCCAA+GGG - tig0001526:125130-125149 Msa1337480:intron 55.0%
!! AGCACAGTAGGGTTGGCTCT+TGG - tig0001526:125845-125864 Msa1337480:intron 55.0%
GCATGGAAGAGCTAGCAGGA+TGG + tig0001526:125898-125917 None:intergenic 55.0%
GGTTGCATGGAAGAGCTAGC+AGG + tig0001526:125902-125921 None:intergenic 55.0%
! ATTTGGGGCAGGTGGTTGCA+TGG + tig0001526:125915-125934 None:intergenic 55.0%
! CTTCGCCTTTTCAGCATGGG+AGG - tig0001526:126049-126068 Msa1337480:intron 55.0%
TCGTCCTGGCAAAGCTGTTG+TGG - tig0001526:126156-126175 Msa1337480:intron 55.0%
CGTCCTGGCAAAGCTGTTGT+GGG - tig0001526:126157-126176 Msa1337480:intron 55.0%
CATCCCACAACAGCTTTGCC+AGG + tig0001526:126163-126182 None:intergenic 55.0%
CTGGCAAAGCTGTTGTGGGA+TGG - tig0001526:126161-126180 Msa1337480:intron 55.0%
! TGAGAAGCGGGCTCAGATAG+AGG - tig0001526:126237-126256 Msa1337480:intron 55.0%
CCCATACTTGCTCCGTCGGT+AGG + tig0001526:120953-120972 None:intergenic 60.0%
AAAAGGGCCCTTGAGGGTGG+TGG - tig0001526:120974-120993 Msa1337480:CDS 60.0%
TGTGAAGGGGGAACCCTTGG+AGG + tig0001526:125146-125165 None:intergenic 60.0%
! GGTGACGAGGTATCCAAGCC+AGG - tig0001526:125712-125731 Msa1337480:intron 60.0%
GATGAGGATCGCTCTCGTCC+TGG - tig0001526:126142-126161 Msa1337480:intron 60.0%
GGGAAAAGGGCCCTTGAGGG+TGG - tig0001526:120971-120990 Msa1337480:CDS 65.0%
!! TTGGTTTGGGGGTGGGGGAC+TGG - tig0001526:122029-122048 Msa1337480:CDS 65.0%
GGCCACGCAGCTCATAGACG+TGG + tig0001526:124491-124510 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0001526 gene 120213 126710 120213 ID=Msa1337480;Name=Msa1337480
tig0001526 mRNA 120213 126710 120213 ID=Msa1337480-mRNA-1;Parent=Msa1337480;Name=Msa1337480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=449|0.88|0.9|1|0.77|0.8|10|437|607
tig0001526 exon 120213 121227 120213 ID=Msa1337480-mRNA-1:exon:1196;Parent=Msa1337480-mRNA-1
tig0001526 exon 121950 122100 121950 ID=Msa1337480-mRNA-1:exon:1195;Parent=Msa1337480-mRNA-1
tig0001526 exon 122360 122563 122360 ID=Msa1337480-mRNA-1:exon:1194;Parent=Msa1337480-mRNA-1
tig0001526 exon 122639 122799 122639 ID=Msa1337480-mRNA-1:exon:1193;Parent=Msa1337480-mRNA-1
tig0001526 exon 122899 123392 122899 ID=Msa1337480-mRNA-1:exon:1192;Parent=Msa1337480-mRNA-1
tig0001526 exon 124363 124421 124363 ID=Msa1337480-mRNA-1:exon:1191;Parent=Msa1337480-mRNA-1
tig0001526 exon 124957 125032 124957 ID=Msa1337480-mRNA-1:exon:1190;Parent=Msa1337480-mRNA-1
tig0001526 exon 125885 126009 125885 ID=Msa1337480-mRNA-1:exon:1189;Parent=Msa1337480-mRNA-1
tig0001526 exon 126248 126635 126248 ID=Msa1337480-mRNA-1:exon:1188;Parent=Msa1337480-mRNA-1
tig0001526 exon 126674 126710 126674 ID=Msa1337480-mRNA-1:exon:1187;Parent=Msa1337480-mRNA-1
tig0001526 five_prime_UTR 126674 126710 126674 ID=Msa1337480-mRNA-1:five_prime_utr;Parent=Msa1337480-mRNA-1
tig0001526 five_prime_UTR 126248 126635 126248 ID=Msa1337480-mRNA-1:five_prime_utr;Parent=Msa1337480-mRNA-1
tig0001526 five_prime_UTR 125986 126009 125986 ID=Msa1337480-mRNA-1:five_prime_utr;Parent=Msa1337480-mRNA-1
tig0001526 CDS 125885 125985 125885 ID=Msa1337480-mRNA-1:cds;Parent=Msa1337480-mRNA-1
tig0001526 CDS 124957 125032 124957 ID=Msa1337480-mRNA-1:cds;Parent=Msa1337480-mRNA-1
tig0001526 CDS 124363 124421 124363 ID=Msa1337480-mRNA-1:cds;Parent=Msa1337480-mRNA-1
tig0001526 CDS 122899 123392 122899 ID=Msa1337480-mRNA-1:cds;Parent=Msa1337480-mRNA-1
tig0001526 CDS 122639 122799 122639 ID=Msa1337480-mRNA-1:cds;Parent=Msa1337480-mRNA-1
tig0001526 CDS 122360 122563 122360 ID=Msa1337480-mRNA-1:cds;Parent=Msa1337480-mRNA-1
tig0001526 CDS 121950 122100 121950 ID=Msa1337480-mRNA-1:cds;Parent=Msa1337480-mRNA-1
tig0001526 CDS 120650 121227 120650 ID=Msa1337480-mRNA-1:cds;Parent=Msa1337480-mRNA-1
tig0001526 three_prime_UTR 120213 120649 120213 ID=Msa1337480-mRNA-1:three_prime_utr;Parent=Msa1337480-mRNA-1
Gene Sequence

>Msa1337480

ATGCAGAGACCACCTACCGACGGAGCAAGTATGGGGAAAAGGGCCCTTGAGGGTGGTGGAGATGATGATCAGCCTGAACGAAAGAGGCCTGCTCTTGCTAGTGTAATTGTTGAAGCTCTCAAGGTGGACAGTTTGCAGAAGCTTTGCTCATCTTTAGAACCTATTCTTCGTAGAGTTGTGAGTGAAGAAGTGGAGCGTGCTTTGGCGAAGTTAGGTCCTGCAAGACTTAGTGGAAGGTCTTCCCCTAAAAGGATTGAAGGTCCTGATGGTAGAAACTTGCGGCTTCAATTTAGGTCCCGACTGGCTCTTCCTCTATTCACAGGAGGAAAAGTGGAAGGCGAGCAGGGGGCTCCAATTCATGTTGTTCTGGTTGATTCCAACAGTGGAAGTGTGGTAACATCTGGACCTGAATCATGTATAAAACTCGATGTCGTTGTCCTTGAAGGCGATTTTAACAATGAAGATGATGAAGATTGGAGCCAAGAGGAATTTGAAAGCCATGTGGTGAAAGAACGCCAAGGAAAGAGACCTTTGTTGAACGGGGAACTGCAAGTGACACTCAAGGAGGGAGTTGGAACATTAGGGGAACTGATATTTACAGACAATTCAAGCTGGATAAGGAGCCGTAAATTCAGGCTTGGAATGAAGGTTGCATCTGGTTTTGGCGAGTCTATACGCATTCGTGAAGCCAAGACAGTGGCTTTTACTGTTAAAGATCATAGAGGAGAATTGTATAAGAAGCATTATCCTCCTGCATTGGGTGATGATGTATGGAGATTGGAGAAAATAGGTAAGGATGGGTCATTTCACAAAAAGTTGAATAATGCTGGAATATTCACCGTTGAAGACTTTCTTCGACTTGTGGTTAAGGATCAACAGAAATTGCGGAATATCCTTGGGAGCGGTATGTCAAACAAGATGTGGGAAGCTCTCTTAGACCATGCAAAGACATGTGTTCTAAGCGGGAAGCTTTATGTTTATTATCCAGAAGATACAAGAAATGTTGGTGTTATTTTTAACCACGTCTATGAGCTGCGTGGCCTTATAACAGGAGAGCAATTCTTTTCTGCTGATTCTCTTAGCGATAATCAGAAGGTGTACGTAGATTCATTGGTGAAAAAGGCATACGACAATTGGGAGCAGGTTGTAGAGTACGATGGCAAATCACTTGTGGATGCTGAGCAAAATAACAACACTGTTGAATCTGAAAATGAACTTCATGTGGAGTCAATTGATTATGATGGCGGTTTTAACAATAGCATGGTGACGAGGTATCCAAGCCAGGCCTTGATTGGAAATTCCAGCTCTCGGAGTCATTTTGATGACTCGTTATATCTGTCTAACGACCATTTATTAGGCAATGCTCACCAATCCCAAAGCTCTAGAAATGATCATAGCACAGTAGGGTTGGCTCTTGGTCCTTCTCAATCATCAACTTCAGGTTTCCATCCTGCTAGCTCTTCCATGCAACCACCTGCCCCAAATCCTTTTGATGATTGGTCAAACAACAGGGACAAGGGTGTTGATGACTTCTTTTCAGAGGATGAAATCCGCGTTAGAAGTAATGAGATACTAGAGAATGAAGACATGCAGCACTTGCTTCGCCTTTTCAGCATGGGAGGTCATCCTTCCATGAATACTGAGGATGGTTATTCATTCCCATCATTCATGCCATCTCCTATGCCGAACTTCGATGAGGATCGCTCTCGTCCTGGCAAAGCTGTTGTGGGATGGCTGAAGATCAAGGCAGCAATGAGGTGGGGCTTCTTTATCAGAAAGATAGCAGCTGAGAAGCGGGCTCAGATAGAGGAGTTAGATGAATAG
Protein sequence

>Msa1337480

MQRPPTDGASMGKRALEGGGDDDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLSGRSSPKRIEGPDGRNLRLQFRSRLALPLFTGGKVEGEQGAPIHVVLVDSNSGSVVTSGPESCIKLDVVVLEGDFNNEDDEDWSQEEFESHVVKERQGKRPLLNGELQVTLKEGVGTLGELIFTDNSSWIRSRKFRLGMKVASGFGESIRIREAKTVAFTVKDHRGELYKKHYPPALGDDVWRLEKIGKDGSFHKKLNNAGIFTVEDFLRLVVKDQQKLRNILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDTRNVGVIFNHVYELRGLITGEQFFSADSLSDNQKVYVDSLVKKAYDNWEQVVEYDGKSLVDAEQNNNTVESENELHVESIDYDGGFNNSMVTRYPSQALIGNSSSRSHFDDSLYLSNDHLLGNAHQSQSSRNDHSTVGLALGPSQSSTSGFHPASSSMQPPAPNPFDDWSNNRDKGVDDFFSEDEIRVRSNEILENEDMQHLLRLFSMGGHPSMNTEDGYSFPSFMPSPMPNFDEDRSRPGKAVVGWLKIKAAMRWGFFIRKIAAEKRAQIEELDE*