AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434770 MtrunA17_Chr3g0140951 96.599 441 14 1 1 440 1 441 0.0 889
Msa0434770 MtrunA17_Chr3g0140001 41.593 452 228 9 1 436 1 432 1.35e-111 335
Msa0434770 MtrunA17_Chr7g0263751 36.639 363 187 7 54 412 2 325 1.96e-72 231
Msa0434770 MtrunA17_Chr5g0401811 28.041 296 162 9 187 440 151 437 1.33e-24 106
Msa0434770 MtrunA17_Chr4g0053291 27.848 316 179 9 167 440 130 438 1.15e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434770 AT1G27600.2 56.433 443 141 8 1 440 1 394 6.00e-172 488
Msa0434770 AT1G27600.1 56.433 443 141 8 1 440 1 394 6.00e-172 488
Msa0434770 AT2G37090.1 35.638 376 186 12 57 414 4 341 1.08e-70 227
Msa0434770 AT5G67230.1 30.479 292 163 9 187 440 152 441 1.23e-29 120
Msa0434770 AT4G36890.1 28.754 313 171 10 171 440 148 451 1.13e-26 112

Find 136 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTTTGTGCAAGAAAATT+TGG 0.094968 3_2:-87798496 None:intergenic
ATTACAAATAAAATTCTTTA+TGG 0.108209 3_2:-87798095 None:intergenic
CGGAATGACGCCATTAATTT+AGG 0.156462 3_2:-87795244 None:intergenic
AAGCAAGAACAAGGCTATTT+TGG 0.178767 3_2:+87797571 Msa0434770:CDS
TCTTGAACTACATGAATTTC+AGG 0.191022 3_2:-87798315 None:intergenic
TGAAAAGTTTGTCTTATTCT+AGG 0.191970 3_2:+87798198 Msa0434770:three_prime_UTR
ATTTCAATCCCTAGATTTCT+AGG 0.225591 3_2:+87795201 Msa0434770:five_prime_UTR
TCTTCATGTACCTAAATTAA+TGG 0.228573 3_2:+87795234 Msa0434770:exon
TAAAATTGTATGAAATAAAA+AGG 0.277506 3_2:-87794902 None:intergenic
TTCCACCAATTGTTCAATAA+AGG 0.288276 3_2:-87797878 None:intergenic
TCCCTAGATTTCTAGGGTTT+CGG 0.291271 3_2:+87795208 Msa0434770:five_prime_UTR
GGAAATGAATTCTGCTTCTA+TGG 0.295993 3_2:+87795924 Msa0434770:CDS
GCGATTATTGAGAATTGATT+TGG 0.304122 3_2:-87795608 None:intergenic
AGATTTCATGTTGATATGTC+TGG 0.307522 3_2:+87797662 Msa0434770:CDS
ACTGAGTCTAATTGCCGTAT+AGG 0.330564 3_2:-87797746 None:intergenic
GTAGGGCGCCGCCACCGCTT+TGG 0.351660 3_2:-87797716 None:intergenic
CATGAATTTCAGGTTGTTGC+TGG 0.352673 3_2:-87798305 None:intergenic
TGCGTTCTCTGTTTCTTCGT+TGG 0.355661 3_2:+87795469 Msa0434770:CDS
ATCCGAAACCCTAGAAATCT+AGG 0.355859 3_2:-87795210 None:intergenic
GATCAAAAGACAAGTTAAAT+TGG 0.360375 3_2:-87798374 None:intergenic
AACTTTGTGCAAGAAAATTT+GGG 0.366052 3_2:-87798495 None:intergenic
GACCACCTTTATTGAACAAT+TGG 0.367701 3_2:+87797873 Msa0434770:CDS
TAACCTGTTTCTGTCTTGTT+GGG 0.369942 3_2:-87798460 None:intergenic
GTAACCTGTTTCTGTCTTGT+TGG 0.377556 3_2:-87798461 None:intergenic
TTCTTCATTACACAGGTTAC+CGG 0.380960 3_2:+87795018 Msa0434770:five_prime_UTR
TTCTCAAGCATCCAACCCTT+TGG 0.387858 3_2:-87797988 None:intergenic
GCGTTCTCTGTTTCTTCGTT+GGG 0.390433 3_2:+87795470 Msa0434770:CDS
TATCACACACTCTATAGAAT+TGG 0.394651 3_2:-87798049 None:intergenic
ATTGAACATCATAAACTTGA+TGG 0.398247 3_2:+87796063 Msa0434770:CDS
GCCCTACTTCAAATCCTATA+CGG 0.399233 3_2:+87797732 Msa0434770:CDS
TCGTCGTTTCAGAGATTAAT+CGG 0.401703 3_2:+87795388 Msa0434770:CDS
TTCAGACAATCAGAGATATC+AGG 0.403188 3_2:+87796133 Msa0434770:CDS
AAAATAGCCTTGTTCTTGCT+TGG 0.406483 3_2:-87797569 None:intergenic
TTATTAGGTATGTTCCCTTT+CGG 0.411490 3_2:+87795496 Msa0434770:CDS
CACGTCAGCGTCGGTGGTGG+TGG 0.416469 3_2:+87795643 Msa0434770:CDS
CTGTGTAATGAAGAAATTAC+AGG 0.420105 3_2:-87795010 None:intergenic
GGATAAGGATAAGAAGAGTA+AGG 0.423109 3_2:+87795675 Msa0434770:CDS
TTGCCCAACAAGACAGAAAC+AGG 0.429872 3_2:+87798457 Msa0434770:three_prime_UTR
GTTGCAAGAAAATAATGAAT+TGG 0.437417 3_2:+87797932 Msa0434770:CDS
CACGACCGTCACTACATAAA+CGG 0.444334 3_2:+87795289 Msa0434770:CDS
AATTCTATAGAGTGTGTGAT+AGG 0.451944 3_2:+87798051 Msa0434770:three_prime_UTR
AATGGCGAAAAGTTGCTTTC+AGG 0.453308 3_2:+87795446 Msa0434770:CDS
CACAAACTTCCATCTTCAAA+CGG 0.454365 3_2:+87795346 Msa0434770:CDS
AACTGAGATTTAGAAGTTAG+CGG 0.466415 3_2:-87798137 None:intergenic
TCAACGGATGTGAAGGATAG+AGG 0.473437 3_2:+87796009 Msa0434770:CDS
CACAAAGTTATTTGCAGAGG+TGG 0.474603 3_2:+87798509 Msa0434770:three_prime_UTR
CATAATATAGTTTATCCAAA+GGG 0.474680 3_2:+87797973 Msa0434770:CDS
GTTGCTGGGACCCAAAGAAT+GGG 0.475869 3_2:-87798290 None:intergenic
GAGTAGTTTCCGTTTGAAGA+TGG 0.479126 3_2:-87795355 None:intergenic
GATTTCATGTTGATATGTCT+GGG 0.481532 3_2:+87797663 Msa0434770:CDS
TGTGGGATCCAAAGCGGTGG+CGG 0.482823 3_2:+87797708 Msa0434770:CDS
AGATGGAGACGACGGTGAAA+AGG 0.484318 3_2:-87795323 None:intergenic
TGTTGCTGGGACCCAAAGAA+TGG 0.485589 3_2:-87798291 None:intergenic
CACCTTTATTGAACAATTGG+TGG 0.486008 3_2:+87797876 Msa0434770:CDS
TGACGTGGATGACAGCATCT+AGG 0.490726 3_2:-87798014 None:intergenic
GGTGTCTGTGGTTATGAGTA+TGG 0.493038 3_2:-87795067 None:intergenic
TGGTGGTGATGATGAGGATA+AGG 0.495077 3_2:+87795660 Msa0434770:CDS
CTTGGTGCAAGCATGGCGAC+AGG 0.495355 3_2:-87797551 None:intergenic
ATGAATTTCAGGTTGTTGCT+GGG 0.496226 3_2:-87798304 None:intergenic
TGTGGTTATGAGTATGGATT+CGG 0.500729 3_2:-87795061 None:intergenic
GCCGTATAGGATTTGAAGTA+GGG 0.501903 3_2:-87797733 None:intergenic
ATAATGAAAAGCTGAAAGAG+AGG 0.501926 3_2:+87795749 Msa0434770:CDS
CATGAATGAGATTACCGAAA+GGG 0.506123 3_2:-87795510 None:intergenic
TAGTGACGGTCGTGATATGC+CGG 0.506800 3_2:-87795280 None:intergenic
CAACATAGCATTAGTGCCAC+TGG 0.513166 3_2:-87798437 None:intergenic
ATTCCGACGGACGTTATCTC+CGG 0.516727 3_2:+87795261 Msa0434770:CDS
GAAGATGGAAGTTTGTGAGA+TGG 0.518700 3_2:-87795340 None:intergenic
GTTCTTGCTTGGTGCAAGCA+TGG 0.519522 3_2:-87797558 None:intergenic
TGCCGTATAGGATTTGAAGT+AGG 0.523006 3_2:-87797734 None:intergenic
CACACACTCTATAGAATTGG+TGG 0.524728 3_2:-87798046 None:intergenic
TCTCTCTCTTCACACGAAGA+AGG 0.525805 3_2:+87795102 Msa0434770:five_prime_UTR
TTGAACATCATAAACTTGAT+GGG 0.527171 3_2:+87796064 Msa0434770:CDS
TATGGATTCGGTTCGGATCG+AGG 0.530374 3_2:-87795049 None:intergenic
TTTCAATCCCTAGATTTCTA+GGG 0.530676 3_2:+87795202 Msa0434770:five_prime_UTR
AAGCACGTCAGCGTCGGTGG+TGG 0.531902 3_2:+87795640 Msa0434770:CDS
GGGTGTGATGTATAGGCATT+TGG 0.535560 3_2:+87795972 Msa0434770:CDS
GCAATTAGACTCAGTGAAAG+AGG 0.535687 3_2:+87797754 Msa0434770:CDS
ATATAGTTTATCCAAAGGGT+TGG 0.536359 3_2:+87797977 Msa0434770:CDS
TGCAATGGAAGCCAAGTGCT+TGG 0.537309 3_2:+87797605 Msa0434770:CDS
ATTGATTTGGCATCAGATTG+TGG 0.537571 3_2:-87795595 None:intergenic
GATAAGGATAAGAAGAGTAA+GGG 0.537759 3_2:+87795676 Msa0434770:CDS
TTGTATGCCACCCAAGCACT+TGG 0.538534 3_2:-87797616 None:intergenic
GGTGGAAGATGAGAGTCAAA+TGG 0.541257 3_2:+87797894 Msa0434770:CDS
ATCTGAGAAAATTGATATTG+TGG 0.542030 3_2:+87795783 Msa0434770:CDS
TTATGAGTATGGATTCGGTT+CGG 0.543767 3_2:-87795056 None:intergenic
TCAAATGGAAGGTTCGCCAC+CGG 0.544013 3_2:+87797909 Msa0434770:CDS
CACCAATTGTTCAATAAAGG+TGG 0.551699 3_2:-87797875 None:intergenic
CAAATGGAAGGTTCGCCACC+GGG 0.554822 3_2:+87797910 Msa0434770:CDS
GCAATGGAAGCCAAGTGCTT+GGG 0.557871 3_2:+87797606 Msa0434770:CDS
TAATGAAAAGCTGAAAGAGA+GGG 0.563255 3_2:+87795750 Msa0434770:CDS
TAAGAATTCAACGGATGTGA+AGG 0.565155 3_2:+87796002 Msa0434770:CDS
TTGGAGGGTCCGGTATGCAA+TGG 0.566859 3_2:+87797590 Msa0434770:CDS
ACTTGGCTTCCATTGCATAC+CGG 0.569129 3_2:-87797599 None:intergenic
TATAGAGTGTGTGATAGGTA+TGG 0.570408 3_2:+87798056 Msa0434770:three_prime_UTR
TCATCAGAGGAATAAAGCAT+TGG 0.572046 3_2:+87796035 Msa0434770:CDS
ACCACCCATAAAAGCGGCGG+CGG 0.572761 3_2:-87795898 None:intergenic
GAGAGAGAAGACGGTGTCTG+TGG 0.577430 3_2:-87795079 None:intergenic
TGAAAAGCGCGGTTATAAGT+CGG 0.578372 3_2:-87795832 None:intergenic
ATGCGACGATACAATCGAAA+GGG 0.578550 3_2:+87795421 Msa0434770:CDS
CTGTAATTTCTTCATTACAC+AGG 0.579666 3_2:+87795011 Msa0434770:five_prime_UTR
AATTAATGGCGTCATTCCGA+CGG 0.581992 3_2:+87795248 Msa0434770:exon
CATTCAACAGCACAATCCTG+TGG 0.583078 3_2:+87797690 Msa0434770:CDS
CTCAAACATGAACGCTGAGA+AGG 0.583981 3_2:+87795726 Msa0434770:CDS
TCATAATATAGTTTATCCAA+AGG 0.585209 3_2:+87797972 Msa0434770:CDS
GATACAATCGAAAGGGACAA+TGG 0.588516 3_2:+87795428 Msa0434770:CDS
TCCGAAACCCTAGAAATCTA+GGG 0.591119 3_2:-87795209 None:intergenic
TTGCACAAAGTTATTTGCAG+AGG 0.595116 3_2:+87798506 Msa0434770:three_prime_UTR
CGGTGGTGGTGGTGATGATG+AGG 0.599517 3_2:+87795654 Msa0434770:CDS
CAATTAGACTCAGTGAAAGA+GGG 0.602242 3_2:+87797755 Msa0434770:CDS
GCTTGCACCAAGCAAGAACA+AGG 0.606742 3_2:+87797562 Msa0434770:CDS
TCCTGTGGGATCCAAAGCGG+TGG 0.608772 3_2:+87797705 Msa0434770:CDS
GCCACCGCTTTGGATCCCAC+AGG 0.619308 3_2:-87797706 None:intergenic
TCGGATCGAGGTTGAAACTC+CGG 0.621620 3_2:-87795037 None:intergenic
AGGATAGAGGAGTTCATCAG+AGG 0.628437 3_2:+87796022 Msa0434770:CDS
CGTCACTACATAAACGGCGG+TGG 0.628520 3_2:+87795295 Msa0434770:CDS
ATGGAAGCCAAGTGCTTGGG+TGG 0.635295 3_2:+87797609 Msa0434770:CDS
TCCACCACCACCCATAAAAG+CGG 0.639611 3_2:-87795904 None:intergenic
TGGTGGAAGATTACTTGACG+TGG 0.643604 3_2:-87798029 None:intergenic
CATGCGACGATACAATCGAA+AGG 0.645339 3_2:+87795420 Msa0434770:CDS
TGGAGACGACGGTGAAAAGG+CGG 0.646294 3_2:-87795320 None:intergenic
GCTCATCAGTTAGCCACCAG+TGG 0.647141 3_2:+87798421 Msa0434770:three_prime_UTR
CACCGCCGTTTATGTAGTGA+CGG 0.648586 3_2:-87795294 None:intergenic
TCATGAATGAGATTACCGAA+AGG 0.650007 3_2:-87795511 None:intergenic
ATTCAACAGCACAATCCTGT+GGG 0.650054 3_2:+87797691 Msa0434770:CDS
AGAAAATTGATATTGTGGCG+AGG 0.651531 3_2:+87795788 Msa0434770:CDS
TTGCTGGGACCCAAAGAATG+GGG 0.653893 3_2:-87798289 None:intergenic
GAAGATGAGAGTCAAATGGA+AGG 0.657273 3_2:+87797898 Msa0434770:CDS
GGATACTCTTACAATTACAA+CGG 0.657840 3_2:-87798221 None:intergenic
ACCACCACCCATAAAAGCGG+CGG 0.658671 3_2:-87795901 None:intergenic
CATAGCATTAGTGCCACTGG+TGG 0.676902 3_2:-87798434 None:intergenic
TCGTTTCAGAGATTAATCGG+TGG 0.678331 3_2:+87795391 Msa0434770:CDS
GGTGTGTACTAAGAATTCAA+CGG 0.679123 3_2:+87795993 Msa0434770:CDS
ATGCCGGAGATAACGTCCGT+CGG 0.686418 3_2:-87795264 None:intergenic
GACCGTCACTACATAAACGG+CGG 0.698582 3_2:+87795292 Msa0434770:CDS
CAATCCTGTGGGATCCAAAG+CGG 0.703864 3_2:+87797702 Msa0434770:CDS
AGTTTGTGAGATGGAGACGA+CGG 0.778732 3_2:-87795331 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTATGAAATAAAA+AGG - chr3_2:87794905-87794924 None:intergenic 10.0%
!! ATATTTGAAAAATTCAAATT+TGG - chr3_2:87797269-87797288 None:intergenic 10.0%
!! ATTACAAATAAAATTCTTTA+TGG - chr3_2:87798098-87798117 None:intergenic 10.0%
!! AATAATAATCCTAAAAAAGT+AGG - chr3_2:87796190-87796209 None:intergenic 15.0%
!!! ACTTTTTTAGGATTATTATT+CGG + chr3_2:87796190-87796209 Msa0434770:intron 15.0%
!! AACTTTAAGTATAAATTCAA+AGG - chr3_2:87796221-87796240 None:intergenic 15.0%
!! AAAAAAAAAACAATCATCAA+GGG - chr3_2:87796448-87796467 None:intergenic 15.0%
!!! TTTTTTCTCTTAAATATCTT+TGG + chr3_2:87796462-87796481 Msa0434770:intron 15.0%
!! ATAAAATTCATACAAAGAAA+CGG - chr3_2:87796494-87796513 None:intergenic 15.0%
!!! TCTTTGTATGAATTTTATAA+CGG + chr3_2:87796496-87796515 Msa0434770:intron 15.0%
!! AAATCAAAACAATACAAATT+AGG - chr3_2:87796780-87796799 None:intergenic 15.0%
!!! ATTTTCCTTTTTTAATGAAA+TGG + chr3_2:87797240-87797259 Msa0434770:intron 15.0%
!! ATTAAATAAATTTGTGTGTT+TGG + chr3_2:87797299-87797318 Msa0434770:intron 15.0%
!!! TTCAGTCATATTTTTTGAAT+AGG + chr3_2:87795851-87795870 Msa0434770:CDS 20.0%
!!! TCATATTTTTTGAATAGGTT+AGG + chr3_2:87795856-87795875 Msa0434770:CDS 20.0%
!!! CATATTTTTTGAATAGGTTA+GGG + chr3_2:87795857-87795876 Msa0434770:CDS 20.0%
!!! TAAAGTTATATTGCTTGTTT+TGG + chr3_2:87796234-87796253 Msa0434770:intron 20.0%
!! GAAAAAAAAAACAATCATCA+AGG - chr3_2:87796449-87796468 None:intergenic 20.0%
!!! CTTTGTATGAATTTTATAAC+GGG + chr3_2:87796497-87796516 Msa0434770:intron 20.0%
!! AATCAATACATAACAATCAA+AGG - chr3_2:87797218-87797237 None:intergenic 20.0%
!! TAAATAAAAGTAATGATAGG+AGG - chr3_2:87797793-87797812 None:intergenic 20.0%
!! GTGTAAATAAAAGTAATGAT+AGG - chr3_2:87797796-87797815 None:intergenic 20.0%
!! TCATAATATAGTTTATCCAA+AGG + chr3_2:87797972-87797991 Msa0434770:CDS 20.0%
!! CATAATATAGTTTATCCAAA+GGG + chr3_2:87797973-87797992 Msa0434770:CDS 20.0%
!!! TGTAGTTCAAGAAATTTTTA+TGG + chr3_2:87798326-87798345 Msa0434770:three_prime_UTR 20.0%
!!! GTAGTTCAAGAAATTTTTAT+GGG + chr3_2:87798327-87798346 Msa0434770:three_prime_UTR 20.0%
! TCTTCATGTACCTAAATTAA+TGG + chr3_2:87795234-87795253 Msa0434770:exon 25.0%
! ATCTGAGAAAATTGATATTG+TGG + chr3_2:87795783-87795802 Msa0434770:CDS 25.0%
! ATTGAACATCATAAACTTGA+TGG + chr3_2:87796063-87796082 Msa0434770:CDS 25.0%
! TTGAACATCATAAACTTGAT+GGG + chr3_2:87796064-87796083 Msa0434770:CDS 25.0%
!!! TGTGTTATACCTACTTTTTT+AGG + chr3_2:87796178-87796197 Msa0434770:intron 25.0%
! AAAACATGCTAATGTAACAA+AGG - chr3_2:87796879-87796898 None:intergenic 25.0%
! GGTGAAAACAAGATTTATAA+AGG - chr3_2:87796912-87796931 None:intergenic 25.0%
! CAGGAAATAAAGTGAAAATA+CGG + chr3_2:87796956-87796975 Msa0434770:intron 25.0%
!!! TTCCCTTTTTAATTAAGTGT+AGG + chr3_2:87797057-87797076 Msa0434770:intron 25.0%
! CTCCTACACTTAATTAAAAA+GGG - chr3_2:87797062-87797081 None:intergenic 25.0%
! GGATTCCATTTCATTAAAAA+AGG - chr3_2:87797248-87797267 None:intergenic 25.0%
!! ATAATACCTTTAACTTTGAC+AGG + chr3_2:87797849-87797868 Msa0434770:intron 25.0%
! GTTGCAAGAAAATAATGAAT+TGG + chr3_2:87797932-87797951 Msa0434770:CDS 25.0%
!! TGAAAAGTTTGTCTTATTCT+AGG + chr3_2:87798198-87798217 Msa0434770:three_prime_UTR 25.0%
!! TTTTTCTCTCTCTCTTTTTT+GGG - chr3_2:87798267-87798286 None:intergenic 25.0%
!! ATTTTTCTCTCTCTCTTTTT+TGG - chr3_2:87798268-87798287 None:intergenic 25.0%
!!! GGTTTGTTATACTTTTTAAC+TGG + chr3_2:87798348-87798367 Msa0434770:three_prime_UTR 25.0%
! GATCAAAAGACAAGTTAAAT+TGG - chr3_2:87798377-87798396 None:intergenic 25.0%
!! TCATGACAATTTTCTCATAT+TGG + chr3_2:87798395-87798414 Msa0434770:three_prime_UTR 25.0%
!! CATGACAATTTTCTCATATT+GGG + chr3_2:87798396-87798415 Msa0434770:three_prime_UTR 25.0%
! AACTTTGTGCAAGAAAATTT+GGG - chr3_2:87798498-87798517 None:intergenic 25.0%
! TAACTTTGTGCAAGAAAATT+TGG - chr3_2:87798499-87798518 None:intergenic 25.0%
!! TATTGAGAAAGATTTTGCAA+AGG + chr3_2:87798555-87798574 Msa0434770:three_prime_UTR 25.0%
CTGTGTAATGAAGAAATTAC+AGG - chr3_2:87795013-87795032 None:intergenic 30.0%
CTGTAATTTCTTCATTACAC+AGG + chr3_2:87795011-87795030 Msa0434770:five_prime_UTR 30.0%
ATTTCAATCCCTAGATTTCT+AGG + chr3_2:87795201-87795220 Msa0434770:five_prime_UTR 30.0%
TTTCAATCCCTAGATTTCTA+GGG + chr3_2:87795202-87795221 Msa0434770:five_prime_UTR 30.0%
! TTCTTCGTTGGGTTTTTATT+AGG + chr3_2:87795481-87795500 Msa0434770:CDS 30.0%
TTATTAGGTATGTTCCCTTT+CGG + chr3_2:87795496-87795515 Msa0434770:CDS 30.0%
GCGATTATTGAGAATTGATT+TGG - chr3_2:87795611-87795630 None:intergenic 30.0%
GATAAGGATAAGAAGAGTAA+GGG + chr3_2:87795676-87795695 Msa0434770:CDS 30.0%
ATAATGAAAAGCTGAAAGAG+AGG + chr3_2:87795749-87795768 Msa0434770:CDS 30.0%
TAATGAAAAGCTGAAAGAGA+GGG + chr3_2:87795750-87795769 Msa0434770:CDS 30.0%
AAAAATATGACTGAAAAGCG+CGG - chr3_2:87795846-87795865 None:intergenic 30.0%
TGCTGAATTGTTGAGAAAAA+CGG + chr3_2:87795951-87795970 Msa0434770:CDS 30.0%
AAAAGTAGGTATAACACAAC+AGG - chr3_2:87796176-87796195 None:intergenic 30.0%
!!! AGTTATATTGCTTGTTTTGG+AGG + chr3_2:87796237-87796256 Msa0434770:intron 30.0%
AAAAAACAATCATCAAGGGA+GGG - chr3_2:87796444-87796463 None:intergenic 30.0%
AAAAAAACAATCATCAAGGG+AGG - chr3_2:87796445-87796464 None:intergenic 30.0%
!! TGTATGAATTTTATAACGGG+CGG + chr3_2:87796500-87796519 Msa0434770:intron 30.0%
AGTTATGAAGGTGACATTTA+CGG - chr3_2:87796637-87796656 None:intergenic 30.0%
TCGAGAATTTATGAAGGAAA+AGG - chr3_2:87796933-87796952 None:intergenic 30.0%
!! CTGTTTTCGAGAATTTATGA+AGG - chr3_2:87796939-87796958 None:intergenic 30.0%
CTTCATAAATTCTCGAAAAC+AGG + chr3_2:87796937-87796956 Msa0434770:intron 30.0%
!!! ACTTTTTTCCCTTCCATTTT+CGG - chr3_2:87797029-87797048 None:intergenic 30.0%
CCTCCTACACTTAATTAAAA+AGG - chr3_2:87797063-87797082 None:intergenic 30.0%
!! CCTTTTTAATTAAGTGTAGG+AGG + chr3_2:87797060-87797079 Msa0434770:intron 30.0%
TTTAATTAAGTGTAGGAGGA+AGG + chr3_2:87797064-87797083 Msa0434770:intron 30.0%
AAAAACACAATTGCCAAAGA+TGG - chr3_2:87797195-87797214 None:intergenic 30.0%
AAGTTAAATGATGTACACAG+AGG - chr3_2:87797423-87797442 None:intergenic 30.0%
TTGGATGACACAATTCATAA+AGG - chr3_2:87797463-87797482 None:intergenic 30.0%
CAGTTCAACATTAGAACATA+GGG - chr3_2:87797506-87797525 None:intergenic 30.0%
!!! AACTGGTTTTATAGTCGTTT+TGG + chr3_2:87797521-87797540 Msa0434770:intron 30.0%
AGATTTCATGTTGATATGTC+TGG + chr3_2:87797662-87797681 Msa0434770:CDS 30.0%
GATTTCATGTTGATATGTCT+GGG + chr3_2:87797663-87797682 Msa0434770:CDS 30.0%
TATCAGATAATACGAATTGC+AGG - chr3_2:87797832-87797851 None:intergenic 30.0%
TTCCACCAATTGTTCAATAA+AGG - chr3_2:87797881-87797900 None:intergenic 30.0%
! TTCATTATTTTCTTGCAACC+CGG - chr3_2:87797931-87797950 None:intergenic 30.0%
ATATAGTTTATCCAAAGGGT+TGG + chr3_2:87797977-87797996 Msa0434770:CDS 30.0%
TATCACACACTCTATAGAAT+TGG - chr3_2:87798052-87798071 None:intergenic 30.0%
AATTCTATAGAGTGTGTGAT+AGG + chr3_2:87798051-87798070 Msa0434770:three_prime_UTR 30.0%
AACTGAGATTTAGAAGTTAG+CGG - chr3_2:87798140-87798159 None:intergenic 30.0%
!!! CTAAATCTCAGTTTTGTTAG+TGG + chr3_2:87798147-87798166 Msa0434770:three_prime_UTR 30.0%
GGATACTCTTACAATTACAA+CGG - chr3_2:87798224-87798243 None:intergenic 30.0%
!! TTTTCTCTCTCTCTTTTTTG+GGG - chr3_2:87798266-87798285 None:intergenic 30.0%
AGAAAAATTCCCCATTCTTT+GGG + chr3_2:87798280-87798299 Msa0434770:three_prime_UTR 30.0%
TCTTGAACTACATGAATTTC+AGG - chr3_2:87798318-87798337 None:intergenic 30.0%
TTCTTCATTACACAGGTTAC+CGG + chr3_2:87795018-87795037 Msa0434770:five_prime_UTR 35.0%
! TTATGAGTATGGATTCGGTT+CGG - chr3_2:87795059-87795078 None:intergenic 35.0%
TGTGGTTATGAGTATGGATT+CGG - chr3_2:87795064-87795083 None:intergenic 35.0%
CACAAACTTCCATCTTCAAA+CGG + chr3_2:87795346-87795365 Msa0434770:CDS 35.0%
TCGTCGTTTCAGAGATTAAT+CGG + chr3_2:87795388-87795407 Msa0434770:CDS 35.0%
CATGAATGAGATTACCGAAA+GGG - chr3_2:87795513-87795532 None:intergenic 35.0%
TCATGAATGAGATTACCGAA+AGG - chr3_2:87795514-87795533 None:intergenic 35.0%
! TTGTTTTCACGATGTTGTTG+AGG - chr3_2:87795541-87795560 None:intergenic 35.0%
!! ATTGATTTGGCATCAGATTG+TGG - chr3_2:87795598-87795617 None:intergenic 35.0%
GGATAAGGATAAGAAGAGTA+AGG + chr3_2:87795675-87795694 Msa0434770:CDS 35.0%
AGAAAATTGATATTGTGGCG+AGG + chr3_2:87795788-87795807 Msa0434770:CDS 35.0%
!!! TTTTTTGAATAGGTTAGGGC+AGG + chr3_2:87795861-87795880 Msa0434770:CDS 35.0%
GGAAATGAATTCTGCTTCTA+TGG + chr3_2:87795924-87795943 Msa0434770:CDS 35.0%
GCTGAATTGTTGAGAAAAAC+GGG + chr3_2:87795952-87795971 Msa0434770:CDS 35.0%
GGTGTGTACTAAGAATTCAA+CGG + chr3_2:87795993-87796012 Msa0434770:CDS 35.0%
TAAGAATTCAACGGATGTGA+AGG + chr3_2:87796002-87796021 Msa0434770:CDS 35.0%
TCATCAGAGGAATAAAGCAT+TGG + chr3_2:87796035-87796054 Msa0434770:CDS 35.0%
TTCAGACAATCAGAGATATC+AGG + chr3_2:87796133-87796152 Msa0434770:CDS 35.0%
!!! TATTGCTTGTTTTGGAGGTA+TGG + chr3_2:87796242-87796261 Msa0434770:intron 35.0%
!! ATCGTTTGCCTTTTGTTTGT+TGG + chr3_2:87796286-87796305 Msa0434770:intron 35.0%
ACCAAAAGCCAACAAACAAA+AGG - chr3_2:87796297-87796316 None:intergenic 35.0%
!! ATTTGGGAGTTTGGGTTTTT+GGG + chr3_2:87796412-87796431 Msa0434770:intron 35.0%
!!! GTATGAATTTTATAACGGGC+GGG + chr3_2:87796501-87796520 Msa0434770:intron 35.0%
CTTGTGAATACCCAAAAACA+AGG - chr3_2:87796825-87796844 None:intergenic 35.0%
! AATGACGTATTGACCGAAAA+TGG + chr3_2:87797013-87797032 Msa0434770:intron 35.0%
GTAGATACAACTCAGAAAAC+TGG - chr3_2:87797337-87797356 None:intergenic 35.0%
! GTTTTCTGAGTTGTATCTAC+TGG + chr3_2:87797337-87797356 Msa0434770:intron 35.0%
AAATGATGTACACAGAGGAT+GGG - chr3_2:87797418-87797437 None:intergenic 35.0%
TAAATGATGTACACAGAGGA+TGG - chr3_2:87797419-87797438 None:intergenic 35.0%
TAGGAACTGAATGAACAAGT+TGG - chr3_2:87797482-87797501 None:intergenic 35.0%
CAACATTAGAACATAGGGTT+AGG - chr3_2:87797501-87797520 None:intergenic 35.0%
CCAGTTCAACATTAGAACAT+AGG - chr3_2:87797507-87797526 None:intergenic 35.0%
CCTATGTTCTAATGTTGAAC+TGG + chr3_2:87797504-87797523 Msa0434770:intron 35.0%
!! TTTATAGTCGTTTTGGCACT+TGG + chr3_2:87797528-87797547 Msa0434770:intron 35.0%
!! AAAATAGCCTTGTTCTTGCT+TGG - chr3_2:87797572-87797591 None:intergenic 35.0%
! AAGCAAGAACAAGGCTATTT+TGG + chr3_2:87797571-87797590 Msa0434770:CDS 35.0%
!! AAGAACAAGGCTATTTTGGA+GGG + chr3_2:87797575-87797594 Msa0434770:CDS 35.0%
CAATTAGACTCAGTGAAAGA+GGG + chr3_2:87797755-87797774 Msa0434770:CDS 35.0%
ATACGAATTGCAGGTGATAT+GGG - chr3_2:87797823-87797842 None:intergenic 35.0%
AATACGAATTGCAGGTGATA+TGG - chr3_2:87797824-87797843 None:intergenic 35.0%
GACCACCTTTATTGAACAAT+TGG + chr3_2:87797873-87797892 Msa0434770:CDS 35.0%
CACCAATTGTTCAATAAAGG+TGG - chr3_2:87797878-87797897 None:intergenic 35.0%
CACCTTTATTGAACAATTGG+TGG + chr3_2:87797876-87797895 Msa0434770:CDS 35.0%
TATAGAGTGTGTGATAGGTA+TGG + chr3_2:87798056-87798075 Msa0434770:three_prime_UTR 35.0%
!!! TTTCTCTCTCTCTTTTTTGG+GGG - chr3_2:87798265-87798284 None:intergenic 35.0%
GAGAAAAATTCCCCATTCTT+TGG + chr3_2:87798279-87798298 Msa0434770:three_prime_UTR 35.0%
!! ATGAATTTCAGGTTGTTGCT+GGG - chr3_2:87798307-87798326 None:intergenic 35.0%
!! TAACCTGTTTCTGTCTTGTT+GGG - chr3_2:87798463-87798482 None:intergenic 35.0%
TTGCACAAAGTTATTTGCAG+AGG + chr3_2:87798506-87798525 Msa0434770:three_prime_UTR 35.0%
!! TCCCTAGATTTCTAGGGTTT+CGG + chr3_2:87795208-87795227 Msa0434770:five_prime_UTR 40.0%
TCCGAAACCCTAGAAATCTA+GGG - chr3_2:87795212-87795231 None:intergenic 40.0%
ATCCGAAACCCTAGAAATCT+AGG - chr3_2:87795213-87795232 None:intergenic 40.0%
CGGAATGACGCCATTAATTT+AGG - chr3_2:87795247-87795266 None:intergenic 40.0%
AATTAATGGCGTCATTCCGA+CGG + chr3_2:87795248-87795267 Msa0434770:exon 40.0%
GAAGATGGAAGTTTGTGAGA+TGG - chr3_2:87795343-87795362 None:intergenic 40.0%
GAGTAGTTTCCGTTTGAAGA+TGG - chr3_2:87795358-87795377 None:intergenic 40.0%
TCGTTTCAGAGATTAATCGG+TGG + chr3_2:87795391-87795410 Msa0434770:CDS 40.0%
ATGCGACGATACAATCGAAA+GGG + chr3_2:87795421-87795440 Msa0434770:CDS 40.0%
GATACAATCGAAAGGGACAA+TGG + chr3_2:87795428-87795447 Msa0434770:CDS 40.0%
! AATGGCGAAAAGTTGCTTTC+AGG + chr3_2:87795446-87795465 Msa0434770:CDS 40.0%
! TGAAAAGCGCGGTTATAAGT+CGG - chr3_2:87795835-87795854 None:intergenic 40.0%
GAAAAACGGGTGTGATGTAT+AGG + chr3_2:87795965-87795984 Msa0434770:CDS 40.0%
!!! GCCTTTTGTTTGTTGGCTTT+TGG + chr3_2:87796293-87796312 Msa0434770:intron 40.0%
TGTCTCAATGCAGTTGTAGT+TGG + chr3_2:87796333-87796352 Msa0434770:intron 40.0%
!!! AGTTGGTACTGTTGGCTTTT+AGG + chr3_2:87796350-87796369 Msa0434770:intron 40.0%
!!! GTTGGTACTGTTGGCTTTTA+GGG + chr3_2:87796351-87796370 Msa0434770:intron 40.0%
ATGTGTAGCATGTAAGTTCG+TGG + chr3_2:87796382-87796401 Msa0434770:intron 40.0%
TGTGTAGCATGTAAGTTCGT+GGG + chr3_2:87796383-87796402 Msa0434770:intron 40.0%
AAGTTCGTGGGATTGTGATT+TGG + chr3_2:87796395-87796414 Msa0434770:intron 40.0%
AGTTCGTGGGATTGTGATTT+GGG + chr3_2:87796396-87796415 Msa0434770:intron 40.0%
! GGATTGTGATTTGGGAGTTT+GGG + chr3_2:87796404-87796423 Msa0434770:intron 40.0%
!! GATTTGGGAGTTTGGGTTTT+TGG + chr3_2:87796411-87796430 Msa0434770:intron 40.0%
CCGTTAGACTACAAGTGTAT+CGG - chr3_2:87796529-87796548 None:intergenic 40.0%
CCGATACACTTGTAGTCTAA+CGG + chr3_2:87796526-87796545 Msa0434770:intron 40.0%
TACACTTGTAGTCTAACGGT+TGG + chr3_2:87796530-87796549 Msa0434770:intron 40.0%
TCTGCATTATCCAATGAGTC+TGG + chr3_2:87796564-87796583 Msa0434770:intron 40.0%
GGTTACAGTTATTGAGGCAT+TGG + chr3_2:87796588-87796607 Msa0434770:intron 40.0%
!! TACAGTTATTGAGGCATTGG+TGG + chr3_2:87796591-87796610 Msa0434770:intron 40.0%
TTGTCGGTAGCAAGTTATGA+AGG - chr3_2:87796649-87796668 None:intergenic 40.0%
!! ATAACTTGCTACCGACAAGT+TGG + chr3_2:87796651-87796670 Msa0434770:intron 40.0%
CTCAAGAACAACCAACTTGT+CGG - chr3_2:87796665-87796684 None:intergenic 40.0%
!! ACAAGTTGGTTGTTCTTGAG+AGG + chr3_2:87796665-87796684 Msa0434770:intron 40.0%
GTTCTTGAGAGGAGTTAATG+TGG + chr3_2:87796676-87796695 Msa0434770:intron 40.0%
GTTAATGTGGCCGAAATTTG+CGG + chr3_2:87796689-87796708 Msa0434770:intron 40.0%
!!! TGACTAATGCGCCTTGTTTT+TGG + chr3_2:87796811-87796830 Msa0434770:intron 40.0%
!!! GACTAATGCGCCTTGTTTTT+GGG + chr3_2:87796812-87796831 Msa0434770:intron 40.0%
! ACGTATTGACCGAAAATGGA+AGG + chr3_2:87797017-87797036 Msa0434770:intron 40.0%
! CGTATTGACCGAAAATGGAA+GGG + chr3_2:87797018-87797037 Msa0434770:intron 40.0%
ATTAAGTGTAGGAGGAAGGT+AGG + chr3_2:87797068-87797087 Msa0434770:intron 40.0%
TGAACCTTCATTGAAGCATG+TGG - chr3_2:87797121-87797140 None:intergenic 40.0%
GCTTCAATGAAGGTTCATAG+TGG + chr3_2:87797124-87797143 Msa0434770:intron 40.0%
ACACAATTGCCAAAGATGGT+TGG - chr3_2:87797191-87797210 None:intergenic 40.0%
!! CAAGAACAAGGCTATTTTGG+AGG + chr3_2:87797574-87797593 Msa0434770:CDS 40.0%
ATTCAACAGCACAATCCTGT+GGG + chr3_2:87797691-87797710 Msa0434770:CDS 40.0%
GCCCTACTTCAAATCCTATA+CGG + chr3_2:87797732-87797751 Msa0434770:CDS 40.0%
! GCCGTATAGGATTTGAAGTA+GGG - chr3_2:87797736-87797755 None:intergenic 40.0%
! TGCCGTATAGGATTTGAAGT+AGG - chr3_2:87797737-87797756 None:intergenic 40.0%
ACTGAGTCTAATTGCCGTAT+AGG - chr3_2:87797749-87797768 None:intergenic 40.0%
GCAATTAGACTCAGTGAAAG+AGG + chr3_2:87797754-87797773 Msa0434770:CDS 40.0%
TACGAATTGCAGGTGATATG+GGG - chr3_2:87797822-87797841 None:intergenic 40.0%
TGGTCTCCTGTCAAAGTTAA+AGG - chr3_2:87797858-87797877 None:intergenic 40.0%
GAAGATGAGAGTCAAATGGA+AGG + chr3_2:87797898-87797917 Msa0434770:CDS 40.0%
! ATTATTTTCTTGCAACCCGG+TGG - chr3_2:87797928-87797947 None:intergenic 40.0%
CACACACTCTATAGAATTGG+TGG - chr3_2:87798049-87798068 None:intergenic 40.0%
!! CATGAATTTCAGGTTGTTGC+TGG - chr3_2:87798308-87798327 None:intergenic 40.0%
!! GTAACCTGTTTCTGTCTTGT+TGG - chr3_2:87798464-87798483 None:intergenic 40.0%
CACAAAGTTATTTGCAGAGG+TGG + chr3_2:87798509-87798528 Msa0434770:three_prime_UTR 40.0%
GGTGTCTGTGGTTATGAGTA+TGG - chr3_2:87795070-87795089 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAGA+CGG - chr3_2:87795091-87795110 None:intergenic 45.0%
TCTCTCTCTTCACACGAAGA+AGG + chr3_2:87795102-87795121 Msa0434770:five_prime_UTR 45.0%
CACGACCGTCACTACATAAA+CGG + chr3_2:87795289-87795308 Msa0434770:CDS 45.0%
AGTTTGTGAGATGGAGACGA+CGG - chr3_2:87795334-87795353 None:intergenic 45.0%
CATGCGACGATACAATCGAA+AGG + chr3_2:87795420-87795439 Msa0434770:CDS 45.0%
! TGCGTTCTCTGTTTCTTCGT+TGG + chr3_2:87795469-87795488 Msa0434770:CDS 45.0%
! GCGTTCTCTGTTTCTTCGTT+GGG + chr3_2:87795470-87795489 Msa0434770:CDS 45.0%
! TTGAAAAAGCACGTCAGCGT+CGG + chr3_2:87795634-87795653 Msa0434770:CDS 45.0%
! TGGTGGTGATGATGAGGATA+AGG + chr3_2:87795660-87795679 Msa0434770:CDS 45.0%
CTCAAACATGAACGCTGAGA+AGG + chr3_2:87795726-87795745 Msa0434770:CDS 45.0%
! ATAGGTTAGGGCAGGTTTTG+AGG + chr3_2:87795869-87795888 Msa0434770:CDS 45.0%
GGGTGTGATGTATAGGCATT+TGG + chr3_2:87795972-87795991 Msa0434770:CDS 45.0%
TCAACGGATGTGAAGGATAG+AGG + chr3_2:87796009-87796028 Msa0434770:CDS 45.0%
AGGATAGAGGAGTTCATCAG+AGG + chr3_2:87796022-87796041 Msa0434770:CDS 45.0%
! GCAGTTGTAGTTGGTACTGT+TGG + chr3_2:87796342-87796361 Msa0434770:intron 45.0%
! GGGATTGTGATTTGGGAGTT+TGG + chr3_2:87796403-87796422 Msa0434770:intron 45.0%
GCATTATCCAATGAGTCTGG+CGG + chr3_2:87796567-87796586 Msa0434770:intron 45.0%
TCTGGCGGTTACAGTTATTG+AGG + chr3_2:87796582-87796601 Msa0434770:intron 45.0%
GCCGAAATTTGCGGTTCTTT+GGG + chr3_2:87796698-87796717 Msa0434770:intron 45.0%
CCCCAAAGAACCGCAAATTT+CGG - chr3_2:87796702-87796721 None:intergenic 45.0%
CCGAAATTTGCGGTTCTTTG+GGG + chr3_2:87796699-87796718 Msa0434770:intron 45.0%
CGAAATTTGCGGTTCTTTGG+GGG + chr3_2:87796700-87796719 Msa0434770:intron 45.0%
! GGTTCTTTGGGGGATCAATT+CGG + chr3_2:87796710-87796729 Msa0434770:intron 45.0%
! GTTCTTTGGGGGATCAATTC+GGG + chr3_2:87796711-87796730 Msa0434770:intron 45.0%
! TTCTTTGGGGGATCAATTCG+GGG + chr3_2:87796712-87796731 Msa0434770:intron 45.0%
! TCGGGGTTTTTACATACGCA+AGG + chr3_2:87796729-87796748 Msa0434770:intron 45.0%
TGGGTATTCACAAGCTTGTC+TGG + chr3_2:87796831-87796850 Msa0434770:intron 45.0%
GGGTATTCACAAGCTTGTCT+GGG + chr3_2:87796832-87796851 Msa0434770:intron 45.0%
ACTTGGCTTCCATTGCATAC+CGG - chr3_2:87797602-87797621 None:intergenic 45.0%
CATTCAACAGCACAATCCTG+TGG + chr3_2:87797690-87797709 Msa0434770:CDS 45.0%
! CTCAGTGAAAGAGGGTTTTC+AGG + chr3_2:87797763-87797782 Msa0434770:CDS 45.0%
ACGAATTGCAGGTGATATGG+GGG - chr3_2:87797821-87797840 None:intergenic 45.0%
GGTGGAAGATGAGAGTCAAA+TGG + chr3_2:87797894-87797913 Msa0434770:CDS 45.0%
TTCTCAAGCATCCAACCCTT+TGG - chr3_2:87797991-87798010 None:intergenic 45.0%
TGGTGGAAGATTACTTGACG+TGG - chr3_2:87798032-87798051 None:intergenic 45.0%
!!! TCTCTCTCTTTTTTGGGGGA+GGG - chr3_2:87798261-87798280 None:intergenic 45.0%
CAACATAGCATTAGTGCCAC+TGG - chr3_2:87798440-87798459 None:intergenic 45.0%
TTGCCCAACAAGACAGAAAC+AGG + chr3_2:87798457-87798476 Msa0434770:three_prime_UTR 45.0%
TCGGATCGAGGTTGAAACTC+CGG - chr3_2:87795040-87795059 None:intergenic 50.0%
!! TATGGATTCGGTTCGGATCG+AGG - chr3_2:87795052-87795071 None:intergenic 50.0%
ATTCCGACGGACGTTATCTC+CGG + chr3_2:87795261-87795280 Msa0434770:CDS 50.0%
TAGTGACGGTCGTGATATGC+CGG - chr3_2:87795283-87795302 None:intergenic 50.0%
GACCGTCACTACATAAACGG+CGG + chr3_2:87795292-87795311 Msa0434770:CDS 50.0%
CACCGCCGTTTATGTAGTGA+CGG - chr3_2:87795297-87795316 None:intergenic 50.0%
AGATGGAGACGACGGTGAAA+AGG - chr3_2:87795326-87795345 None:intergenic 50.0%
!!! GTTAGGGCAGGTTTTGAGGT+TGG + chr3_2:87795873-87795892 Msa0434770:CDS 50.0%
TCCACCACCACCCATAAAAG+CGG - chr3_2:87795907-87795926 None:intergenic 50.0%
ACTGTAACCGCCAGACTCAT+TGG - chr3_2:87796577-87796596 None:intergenic 50.0%
ACGGCGCACAAGTGTTTAAC+TGG - chr3_2:87796618-87796637 None:intergenic 50.0%
GGCCGAAATTTGCGGTTCTT+TGG + chr3_2:87796697-87796716 Msa0434770:intron 50.0%
CAGGCCACATGCTTCAATGA+AGG + chr3_2:87797114-87797133 Msa0434770:intron 50.0%
! CCAAAGATGGTTGGCTCAGT+AGG - chr3_2:87797182-87797201 None:intergenic 50.0%
CCTACTGAGCCAACCATCTT+TGG + chr3_2:87797179-87797198 Msa0434770:intron 50.0%
!! GTTCTTGCTTGGTGCAAGCA+TGG - chr3_2:87797561-87797580 None:intergenic 50.0%
GCTTGCACCAAGCAAGAACA+AGG + chr3_2:87797562-87797581 Msa0434770:CDS 50.0%
!! CAAGGCTATTTTGGAGGGTC+CGG + chr3_2:87797580-87797599 Msa0434770:CDS 50.0%
TGCAATGGAAGCCAAGTGCT+TGG + chr3_2:87797605-87797624 Msa0434770:CDS 50.0%
GCAATGGAAGCCAAGTGCTT+GGG + chr3_2:87797606-87797625 Msa0434770:CDS 50.0%
TTGTATGCCACCCAAGCACT+TGG - chr3_2:87797619-87797638 None:intergenic 50.0%
CAATCCTGTGGGATCCAAAG+CGG + chr3_2:87797702-87797721 Msa0434770:CDS 50.0%
AATTGCAGGTGATATGGGGG+TGG - chr3_2:87797818-87797837 None:intergenic 50.0%
TCAAATGGAAGGTTCGCCAC+CGG + chr3_2:87797909-87797928 Msa0434770:CDS 50.0%
TGACGTGGATGACAGCATCT+AGG - chr3_2:87798017-87798036 None:intergenic 50.0%
!!! TCTCTCTTTTTTGGGGGAGG+GGG - chr3_2:87798259-87798278 None:intergenic 50.0%
!!! CTCTCTCTTTTTTGGGGGAG+GGG - chr3_2:87798260-87798279 None:intergenic 50.0%
!!! CTCTCTCTCTTTTTTGGGGG+AGG - chr3_2:87798262-87798281 None:intergenic 50.0%
TTGCTGGGACCCAAAGAATG+GGG - chr3_2:87798292-87798311 None:intergenic 50.0%
GTTGCTGGGACCCAAAGAAT+GGG - chr3_2:87798293-87798312 None:intergenic 50.0%
TGTTGCTGGGACCCAAAGAA+TGG - chr3_2:87798294-87798313 None:intergenic 50.0%
! CATAGCATTAGTGCCACTGG+TGG - chr3_2:87798437-87798456 None:intergenic 50.0%
GAGAGAGAAGACGGTGTCTG+TGG - chr3_2:87795082-87795101 None:intergenic 55.0%
ATGCCGGAGATAACGTCCGT+CGG - chr3_2:87795267-87795286 None:intergenic 55.0%
CGTCACTACATAAACGGCGG+TGG + chr3_2:87795295-87795314 Msa0434770:CDS 55.0%
TGGAGACGACGGTGAAAAGG+CGG - chr3_2:87795323-87795342 None:intergenic 55.0%
! AAAAAGCACGTCAGCGTCGG+TGG + chr3_2:87795637-87795656 Msa0434770:CDS 55.0%
ACCACCACCCATAAAAGCGG+CGG - chr3_2:87795904-87795923 None:intergenic 55.0%
ATGTGGCCTGTCTCGACCAT+GGG - chr3_2:87797104-87797123 None:intergenic 55.0%
TTGGAGGGTCCGGTATGCAA+TGG + chr3_2:87797590-87797609 Msa0434770:CDS 55.0%
ATGGAAGCCAAGTGCTTGGG+TGG + chr3_2:87797609-87797628 Msa0434770:CDS 55.0%
CAAATGGAAGGTTCGCCACC+GGG + chr3_2:87797910-87797929 Msa0434770:CDS 55.0%
!!! TTTTTTGGGGGAGGGGGCTA+AGG - chr3_2:87798253-87798272 None:intergenic 55.0%
GCTCATCAGTTAGCCACCAG+TGG + chr3_2:87798421-87798440 Msa0434770:three_prime_UTR 55.0%
!! CGGTGGTGGTGGTGATGATG+AGG + chr3_2:87795654-87795673 Msa0434770:CDS 60.0%
ACCACCCATAAAAGCGGCGG+CGG - chr3_2:87795901-87795920 None:intergenic 60.0%
!!! GCCGCTTTTATGGGTGGTGG+TGG + chr3_2:87795903-87795922 Msa0434770:CDS 60.0%
! GGTAGGTTGACCCACTCCCA+TGG + chr3_2:87797085-87797104 Msa0434770:intron 60.0%
CCTGTCTCGACCATGGGAGT+GGG - chr3_2:87797098-87797117 None:intergenic 60.0%
CATGTGGCCTGTCTCGACCA+TGG - chr3_2:87797105-87797124 None:intergenic 60.0%
! CTTGGTGCAAGCATGGCGAC+AGG - chr3_2:87797554-87797573 None:intergenic 60.0%
TCCTGTGGGATCCAAAGCGG+TGG + chr3_2:87797705-87797724 Msa0434770:CDS 60.0%
TGTGGGATCCAAAGCGGTGG+CGG + chr3_2:87797708-87797727 Msa0434770:CDS 60.0%
!! AAGCACGTCAGCGTCGGTGG+TGG + chr3_2:87795640-87795659 Msa0434770:CDS 65.0%
!!! TGGTGCCGCCGCCGCTTTTA+TGG + chr3_2:87795893-87795912 Msa0434770:CDS 65.0%
!!! GGTGCCGCCGCCGCTTTTAT+GGG + chr3_2:87795894-87795913 Msa0434770:CDS 65.0%
!!! GCCGCCGCTTTTATGGGTGG+TGG + chr3_2:87795900-87795919 Msa0434770:CDS 65.0%
CCCACTCCCATGGTCGAGAC+AGG + chr3_2:87797095-87797114 Msa0434770:intron 65.0%
GCCTGTCTCGACCATGGGAG+TGG - chr3_2:87797099-87797118 None:intergenic 65.0%
! GCCACCGCTTTGGATCCCAC+AGG - chr3_2:87797709-87797728 None:intergenic 65.0%
GGGAGGGGGCTAAGGATGAC+GGG - chr3_2:87798245-87798264 None:intergenic 65.0%
GGGGAGGGGGCTAAGGATGA+CGG - chr3_2:87798246-87798265 None:intergenic 65.0%
!! CACGTCAGCGTCGGTGGTGG+TGG + chr3_2:87795643-87795662 Msa0434770:CDS 70.0%
!!! GCCGCCGCCGCTTTTATGGG+TGG + chr3_2:87795897-87795916 Msa0434770:CDS 70.0%
!! GTAGGGCGCCGCCACCGCTT+TGG - chr3_2:87797719-87797738 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87794844 87798632 87794844 ID=Msa0434770;Name=Msa0434770
chr3_2 mRNA 87794844 87798632 87794844 ID=Msa0434770-mRNA-1;Parent=Msa0434770;Name=Msa0434770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=409|1|1|1|1|1|3|591|440
chr3_2 exon 87794844 87796154 87794844 ID=Msa0434770-mRNA-1:exon:25637;Parent=Msa0434770-mRNA-1
chr3_2 exon 87797535 87797784 87797535 ID=Msa0434770-mRNA-1:exon:25638;Parent=Msa0434770-mRNA-1
chr3_2 exon 87797871 87798632 87797871 ID=Msa0434770-mRNA-1:exon:25639;Parent=Msa0434770-mRNA-1
chr3_2 five_prime_UTR 87794844 87795252 87794844 ID=Msa0434770-mRNA-1:five_prime_utr;Parent=Msa0434770-mRNA-1
chr3_2 CDS 87795253 87796154 87795253 ID=Msa0434770-mRNA-1:cds;Parent=Msa0434770-mRNA-1
chr3_2 CDS 87797535 87797784 87797535 ID=Msa0434770-mRNA-1:cds;Parent=Msa0434770-mRNA-1
chr3_2 CDS 87797871 87798041 87797871 ID=Msa0434770-mRNA-1:cds;Parent=Msa0434770-mRNA-1
chr3_2 three_prime_UTR 87798042 87798632 87798042 ID=Msa0434770-mRNA-1:three_prime_utr;Parent=Msa0434770-mRNA-1
Gene Sequence

>Msa0434770

ATGGCGTCATTCCGACGGACGTTATCTCCGGCATATCACGACCGTCACTACATAAACGGCGGTGGTGCCGCCTTTTCACCGTCGTCTCCATCTCACAAACTTCCATCTTCAAACGGAAACTACTCTGCAATAGCTTCGTCGTTTCAGAGATTAATCGGTGGCGTTTTCATGCGACGATACAATCGAAAGGGACAATGGCGAAAAGTTGCTTTCAGGTGCGTTCTCTGTTTCTTCGTTGGGTTTTTATTAGGTATGTTCCCTTTCGGTAATCTCATTCATGAAATTCCTCAACAACATCGTGAAAACAACAACAATATCATTGCTTTTGATATCAATAAAACTCCACAATCTGATGCCAAATCAATTCTCAATAATCGCGTTTTGAAAAAGCACGTCAGCGTCGGTGGTGGTGGTGATGATGAGGATAAGGATAAGAAGAGTAAGGGTTTTTTGATTGAACAAGTAAGTTTGAGCTCAAACATGAACGCTGAGAAGGATAATGAAAAGCTGAAAGAGAGGGAATTGATCGAATCTGAGAAAATTGATATTGTGGCGAGGAAGCAATTGATTATTGTGACACCGACTTATAACCGCGCTTTTCAGTCATATTTTTTGAATAGGTTAGGGCAGGTTTTGAGGTTGGTGCCGCCGCCGCTTTTATGGGTGGTGGTGGAAATGAATTCTGCTTCTATGGAAACTGCTGAATTGTTGAGAAAAACGGGTGTGATGTATAGGCATTTGGTGTGTACTAAGAATTCAACGGATGTGAAGGATAGAGGAGTTCATCAGAGGAATAAAGCATTGGAGCATATTGAACATCATAAACTTGATGGGATTGTTTACTTTGCTGATGATGATAATGTATATTCTCTTGAATTGTTTCAGACAATCAGAGATATCAGTCGTTTTGGCACTTGGCCTGTCGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCGGTATGCAATGGAAGCCAAGTGCTTGGGTGGCATACAAATGAGAAAAGTAAAAGACTTCGAAGATTTCATGTTGATATGTCTGGGTTTGCATTCAACAGCACAATCCTGTGGGATCCAAAGCGGTGGCGGCGCCCTACTTCAAATCCTATACGGCAATTAGACTCAGTGAAAGAGGGTTTTCAGGAGACCACCTTTATTGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGGTTCGCCACCGGGTTGCAAGAAAATAATGAATTGGCATCTTCATTTGAATGTTCATAATATAGTTTATCCAAAGGGTTGGATGCTTGAGAAAAACCTAGATGCTGTCATCCACGTCAAGTAA

Protein sequence

>Msa0434770

MASFRRTLSPAYHDRHYINGGGAAFSPSSPSHKLPSSNGNYSAIASSFQRLIGGVFMRRYNRKGQWRKVAFRCVLCFFVGFLLGMFPFGNLIHEIPQQHRENNNNIIAFDINKTPQSDAKSILNNRVLKKHVSVGGGGDDEDKDKKSKGFLIEQVSLSSNMNAEKDNEKLKERELIESEKIDIVARKQLIIVTPTYNRAFQSYFLNRLGQVLRLVPPPLLWVVVEMNSASMETAELLRKTGVMYRHLVCTKNSTDVKDRGVHQRNKALEHIEHHKLDGIVYFADDDNVYSLELFQTIRDISRFGTWPVAMLAPSKNKAILEGPVCNGSQVLGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSNPIRQLDSVKEGFQETTFIEQLVEDESQMEGSPPGCKKIMNWHLHLNVHNIVYPKGWMLEKNLDAVIHVK*