AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384670 MtrunA17_Chr3g0140951 96.599 441 14 1 1 440 1 441 0.0 889
Msa0384670 MtrunA17_Chr3g0140001 41.593 452 228 9 1 436 1 432 1.35e-111 335
Msa0384670 MtrunA17_Chr7g0263751 36.639 363 187 7 54 412 2 325 1.96e-72 231
Msa0384670 MtrunA17_Chr5g0401811 28.041 296 162 9 187 440 151 437 1.33e-24 106
Msa0384670 MtrunA17_Chr4g0053291 27.848 316 179 9 167 440 130 438 1.15e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384670 AT1G27600.2 56.433 443 141 8 1 440 1 394 6.00e-172 488
Msa0384670 AT1G27600.1 56.433 443 141 8 1 440 1 394 6.00e-172 488
Msa0384670 AT2G37090.1 35.638 376 186 12 57 414 4 341 1.08e-70 227
Msa0384670 AT5G67230.1 30.479 292 163 9 187 440 152 441 1.23e-29 120
Msa0384670 AT4G36890.1 28.754 313 171 10 171 440 148 451 1.13e-26 112

Find 136 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTTTGTGCAAGAAAATT+TGG 0.094968 3_1:+87937550 None:intergenic
ATTACAAATAAAATTCTTTA+TGG 0.108209 3_1:+87937951 None:intergenic
CGGAATGACGCCATTAATTT+AGG 0.156462 3_1:+87940682 None:intergenic
AAGCAAGAACAAGGCTATTT+TGG 0.178767 3_1:-87938475 Msa0384670:CDS
TCTTGAACTACATGAATTTC+AGG 0.191022 3_1:+87937731 None:intergenic
TGAAAAGTTTGTCTTATTCT+AGG 0.191970 3_1:-87937848 Msa0384670:three_prime_UTR
ATTTCAATCCCTAGATTTCT+AGG 0.225591 3_1:-87940725 Msa0384670:five_prime_UTR
TCTTCATGTACCTAAATTAA+TGG 0.228573 3_1:-87940692 Msa0384670:exon
TAAAATTGTATGAAATAAAA+AGG 0.277506 3_1:+87941036 None:intergenic
TTCCACCAATTGTTCAATAA+AGG 0.288276 3_1:+87938168 None:intergenic
TCCCTAGATTTCTAGGGTTT+CGG 0.291271 3_1:-87940718 Msa0384670:five_prime_UTR
GGAAATGAATTCTGCTTCTA+TGG 0.295993 3_1:-87940002 Msa0384670:CDS
GCGATTATTGAGAATTGATT+TGG 0.304122 3_1:+87940318 None:intergenic
AGATTTCATGTTGATATGTC+TGG 0.307522 3_1:-87938384 Msa0384670:CDS
ACTGAGTCTAATTGCCGTAT+AGG 0.330564 3_1:+87938300 None:intergenic
GTAGGGCGCCGCCACCGCTT+TGG 0.351660 3_1:+87938330 None:intergenic
CATGAATTTCAGGTTGTTGC+TGG 0.352673 3_1:+87937741 None:intergenic
TGCGTTCTCTGTTTCTTCGT+TGG 0.355661 3_1:-87940457 Msa0384670:CDS
ATCCGAAACCCTAGAAATCT+AGG 0.355859 3_1:+87940716 None:intergenic
GATCAAAAGACAAGTTAAAT+TGG 0.360375 3_1:+87937672 None:intergenic
AACTTTGTGCAAGAAAATTT+GGG 0.366052 3_1:+87937551 None:intergenic
GACCACCTTTATTGAACAAT+TGG 0.367701 3_1:-87938173 Msa0384670:CDS
TAACCTGTTTCTGTCTTGTT+GGG 0.369942 3_1:+87937586 None:intergenic
GTAACCTGTTTCTGTCTTGT+TGG 0.377556 3_1:+87937585 None:intergenic
TTCTTCATTACACAGGTTAC+CGG 0.380960 3_1:-87940920 Msa0384670:five_prime_UTR
TTCTCAAGCATCCAACCCTT+TGG 0.387858 3_1:+87938058 None:intergenic
GCGTTCTCTGTTTCTTCGTT+GGG 0.390433 3_1:-87940456 Msa0384670:CDS
TATCACACACTCTATAGAAT+TGG 0.394651 3_1:+87937997 None:intergenic
ATTGAACATCATAAACTTGA+TGG 0.398247 3_1:-87939863 Msa0384670:CDS
GCCCTACTTCAAATCCTATA+CGG 0.399233 3_1:-87938314 Msa0384670:CDS
TCGTCGTTTCAGAGATTAAT+CGG 0.401703 3_1:-87940538 Msa0384670:CDS
TTCAGACAATCAGAGATATC+AGG 0.403188 3_1:-87939793 Msa0384670:intron
AAAATAGCCTTGTTCTTGCT+TGG 0.406483 3_1:+87938477 None:intergenic
TTATTAGGTATGTTCCCTTT+CGG 0.411490 3_1:-87940430 Msa0384670:CDS
CACGTCAGCGTCGGTGGTGG+TGG 0.416469 3_1:-87940283 Msa0384670:CDS
CTGTGTAATGAAGAAATTAC+AGG 0.420105 3_1:+87940928 None:intergenic
GGATAAGGATAAGAAGAGTA+AGG 0.423109 3_1:-87940251 Msa0384670:CDS
TTGCCCAACAAGACAGAAAC+AGG 0.429872 3_1:-87937589 Msa0384670:three_prime_UTR
GTTGCAAGAAAATAATGAAT+TGG 0.437417 3_1:-87938114 Msa0384670:CDS
CACGACCGTCACTACATAAA+CGG 0.444334 3_1:-87940637 Msa0384670:CDS
AATTCTATAGAGTGTGTGAT+AGG 0.451944 3_1:-87937995 Msa0384670:three_prime_UTR
AATGGCGAAAAGTTGCTTTC+AGG 0.453308 3_1:-87940480 Msa0384670:CDS
CACAAACTTCCATCTTCAAA+CGG 0.454365 3_1:-87940580 Msa0384670:CDS
AACTGAGATTTAGAAGTTAG+CGG 0.466415 3_1:+87937909 None:intergenic
TCAACGGATGTGAAGGATAG+AGG 0.473437 3_1:-87939917 Msa0384670:CDS
CACAAAGTTATTTGCAGAGG+TGG 0.474603 3_1:-87937537 Msa0384670:three_prime_UTR
CATAATATAGTTTATCCAAA+GGG 0.474680 3_1:-87938073 Msa0384670:CDS
GTTGCTGGGACCCAAAGAAT+GGG 0.475869 3_1:+87937756 None:intergenic
GAGTAGTTTCCGTTTGAAGA+TGG 0.479126 3_1:+87940571 None:intergenic
GATTTCATGTTGATATGTCT+GGG 0.481532 3_1:-87938383 Msa0384670:CDS
TGTGGGATCCAAAGCGGTGG+CGG 0.482823 3_1:-87938338 Msa0384670:CDS
AGATGGAGACGACGGTGAAA+AGG 0.484318 3_1:+87940603 None:intergenic
TGTTGCTGGGACCCAAAGAA+TGG 0.485589 3_1:+87937755 None:intergenic
CACCTTTATTGAACAATTGG+TGG 0.486008 3_1:-87938170 Msa0384670:CDS
TGACGTGGATGACAGCATCT+AGG 0.490726 3_1:+87938032 None:intergenic
GGTGTCTGTGGTTATGAGTA+TGG 0.493038 3_1:+87940871 None:intergenic
TGGTGGTGATGATGAGGATA+AGG 0.495077 3_1:-87940266 Msa0384670:CDS
CTTGGTGCAAGCATGGCGAC+AGG 0.495355 3_1:+87938495 None:intergenic
ATGAATTTCAGGTTGTTGCT+GGG 0.496226 3_1:+87937742 None:intergenic
TGTGGTTATGAGTATGGATT+CGG 0.500729 3_1:+87940877 None:intergenic
GCCGTATAGGATTTGAAGTA+GGG 0.501903 3_1:+87938313 None:intergenic
ATAATGAAAAGCTGAAAGAG+AGG 0.501926 3_1:-87940177 Msa0384670:CDS
CATGAATGAGATTACCGAAA+GGG 0.506123 3_1:+87940416 None:intergenic
TAGTGACGGTCGTGATATGC+CGG 0.506800 3_1:+87940646 None:intergenic
CAACATAGCATTAGTGCCAC+TGG 0.513166 3_1:+87937609 None:intergenic
ATTCCGACGGACGTTATCTC+CGG 0.516727 3_1:-87940665 Msa0384670:CDS
GAAGATGGAAGTTTGTGAGA+TGG 0.518700 3_1:+87940586 None:intergenic
GTTCTTGCTTGGTGCAAGCA+TGG 0.519522 3_1:+87938488 None:intergenic
TGCCGTATAGGATTTGAAGT+AGG 0.523006 3_1:+87938312 None:intergenic
CACACACTCTATAGAATTGG+TGG 0.524728 3_1:+87938000 None:intergenic
TCTCTCTCTTCACACGAAGA+AGG 0.525805 3_1:-87940824 Msa0384670:five_prime_UTR
TTGAACATCATAAACTTGAT+GGG 0.527171 3_1:-87939862 Msa0384670:CDS
TATGGATTCGGTTCGGATCG+AGG 0.530374 3_1:+87940889 None:intergenic
TTTCAATCCCTAGATTTCTA+GGG 0.530676 3_1:-87940724 Msa0384670:five_prime_UTR
AAGCACGTCAGCGTCGGTGG+TGG 0.531902 3_1:-87940286 Msa0384670:CDS
GGGTGTGATGTATAGGCATT+TGG 0.535560 3_1:-87939954 Msa0384670:CDS
GCAATTAGACTCAGTGAAAG+AGG 0.535687 3_1:-87938292 Msa0384670:CDS
ATATAGTTTATCCAAAGGGT+TGG 0.536359 3_1:-87938069 Msa0384670:CDS
TGCAATGGAAGCCAAGTGCT+TGG 0.537309 3_1:-87938441 Msa0384670:CDS
ATTGATTTGGCATCAGATTG+TGG 0.537571 3_1:+87940331 None:intergenic
GATAAGGATAAGAAGAGTAA+GGG 0.537759 3_1:-87940250 Msa0384670:CDS
TTGTATGCCACCCAAGCACT+TGG 0.538534 3_1:+87938430 None:intergenic
GGTGGAAGATGAGAGTCAAA+TGG 0.541257 3_1:-87938152 Msa0384670:CDS
ATCTGAGAAAATTGATATTG+TGG 0.542030 3_1:-87940143 Msa0384670:CDS
TTATGAGTATGGATTCGGTT+CGG 0.543767 3_1:+87940882 None:intergenic
TCAAATGGAAGGTTCGCCAC+CGG 0.544013 3_1:-87938137 Msa0384670:CDS
CACCAATTGTTCAATAAAGG+TGG 0.551699 3_1:+87938171 None:intergenic
CAAATGGAAGGTTCGCCACC+GGG 0.554822 3_1:-87938136 Msa0384670:CDS
GCAATGGAAGCCAAGTGCTT+GGG 0.557871 3_1:-87938440 Msa0384670:CDS
TAATGAAAAGCTGAAAGAGA+GGG 0.563255 3_1:-87940176 Msa0384670:CDS
TAAGAATTCAACGGATGTGA+AGG 0.565155 3_1:-87939924 Msa0384670:CDS
TTGGAGGGTCCGGTATGCAA+TGG 0.566859 3_1:-87938456 Msa0384670:CDS
ACTTGGCTTCCATTGCATAC+CGG 0.569129 3_1:+87938447 None:intergenic
TATAGAGTGTGTGATAGGTA+TGG 0.570408 3_1:-87937990 Msa0384670:three_prime_UTR
TCATCAGAGGAATAAAGCAT+TGG 0.572046 3_1:-87939891 Msa0384670:CDS
ACCACCCATAAAAGCGGCGG+CGG 0.572761 3_1:+87940028 None:intergenic
GAGAGAGAAGACGGTGTCTG+TGG 0.577430 3_1:+87940859 None:intergenic
TGAAAAGCGCGGTTATAAGT+CGG 0.578372 3_1:+87940094 None:intergenic
ATGCGACGATACAATCGAAA+GGG 0.578550 3_1:-87940505 Msa0384670:CDS
CTGTAATTTCTTCATTACAC+AGG 0.579666 3_1:-87940927 Msa0384670:five_prime_UTR
AATTAATGGCGTCATTCCGA+CGG 0.581992 3_1:-87940678 Msa0384670:exon
CATTCAACAGCACAATCCTG+TGG 0.583078 3_1:-87938356 Msa0384670:CDS
CTCAAACATGAACGCTGAGA+AGG 0.583981 3_1:-87940200 Msa0384670:CDS
TCATAATATAGTTTATCCAA+AGG 0.585209 3_1:-87938074 Msa0384670:CDS
GATACAATCGAAAGGGACAA+TGG 0.588516 3_1:-87940498 Msa0384670:CDS
TCCGAAACCCTAGAAATCTA+GGG 0.591119 3_1:+87940717 None:intergenic
TTGCACAAAGTTATTTGCAG+AGG 0.595116 3_1:-87937540 Msa0384670:three_prime_UTR
CGGTGGTGGTGGTGATGATG+AGG 0.599517 3_1:-87940272 Msa0384670:CDS
CAATTAGACTCAGTGAAAGA+GGG 0.602242 3_1:-87938291 Msa0384670:CDS
GCTTGCACCAAGCAAGAACA+AGG 0.606742 3_1:-87938484 Msa0384670:CDS
TCCTGTGGGATCCAAAGCGG+TGG 0.608772 3_1:-87938341 Msa0384670:CDS
GCCACCGCTTTGGATCCCAC+AGG 0.619308 3_1:+87938340 None:intergenic
TCGGATCGAGGTTGAAACTC+CGG 0.621620 3_1:+87940901 None:intergenic
AGGATAGAGGAGTTCATCAG+AGG 0.628437 3_1:-87939904 Msa0384670:CDS
CGTCACTACATAAACGGCGG+TGG 0.628520 3_1:-87940631 Msa0384670:CDS
ATGGAAGCCAAGTGCTTGGG+TGG 0.635295 3_1:-87938437 Msa0384670:CDS
TCCACCACCACCCATAAAAG+CGG 0.639611 3_1:+87940022 None:intergenic
TGGTGGAAGATTACTTGACG+TGG 0.643604 3_1:+87938017 None:intergenic
CATGCGACGATACAATCGAA+AGG 0.645339 3_1:-87940506 Msa0384670:CDS
TGGAGACGACGGTGAAAAGG+CGG 0.646294 3_1:+87940606 None:intergenic
GCTCATCAGTTAGCCACCAG+TGG 0.647141 3_1:-87937625 Msa0384670:three_prime_UTR
CACCGCCGTTTATGTAGTGA+CGG 0.648586 3_1:+87940632 None:intergenic
TCATGAATGAGATTACCGAA+AGG 0.650007 3_1:+87940415 None:intergenic
ATTCAACAGCACAATCCTGT+GGG 0.650054 3_1:-87938355 Msa0384670:CDS
AGAAAATTGATATTGTGGCG+AGG 0.651531 3_1:-87940138 Msa0384670:CDS
TTGCTGGGACCCAAAGAATG+GGG 0.653893 3_1:+87937757 None:intergenic
GAAGATGAGAGTCAAATGGA+AGG 0.657273 3_1:-87938148 Msa0384670:CDS
GGATACTCTTACAATTACAA+CGG 0.657840 3_1:+87937825 None:intergenic
ACCACCACCCATAAAAGCGG+CGG 0.658671 3_1:+87940025 None:intergenic
CATAGCATTAGTGCCACTGG+TGG 0.676902 3_1:+87937612 None:intergenic
TCGTTTCAGAGATTAATCGG+TGG 0.678331 3_1:-87940535 Msa0384670:CDS
GGTGTGTACTAAGAATTCAA+CGG 0.679123 3_1:-87939933 Msa0384670:CDS
ATGCCGGAGATAACGTCCGT+CGG 0.686418 3_1:+87940662 None:intergenic
GACCGTCACTACATAAACGG+CGG 0.698582 3_1:-87940634 Msa0384670:CDS
CAATCCTGTGGGATCCAAAG+CGG 0.703864 3_1:-87938344 Msa0384670:CDS
AGTTTGTGAGATGGAGACGA+CGG 0.778732 3_1:+87940595 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTGTATGAAATAAAA+AGG + chr3_1:87937497-87937516 None:intergenic 10.0%
!! ATATTTGAAAAATTCAAATT+TGG + chr3_1:87939753-87939772 None:intergenic 10.0%
!! ATTACAAATAAAATTCTTTA+TGG + chr3_1:87940582-87940601 None:intergenic 10.0%
!! AATAATAATCCTAAAAAAGT+AGG + chr3_1:87938794-87938813 None:intergenic 15.0%
!!! ACTTTTTTAGGATTATTATT+CGG - chr3_1:87938794-87938813 Msa0384670:intron 15.0%
!! AACTTTAAGTATAAATTCAA+AGG + chr3_1:87938825-87938844 None:intergenic 15.0%
!! AAAAAAAAAACAATCATCAA+GGG + chr3_1:87938931-87938950 None:intergenic 15.0%
!! AAAAAAAAAAACAATCATCA+AGG + chr3_1:87938932-87938951 None:intergenic 15.0%
!!! TTTTTTCTCTTAAATATCTT+TGG - chr3_1:87938946-87938965 Msa0384670:intron 15.0%
!! ATAAAATTCATACAAAGAAA+CGG + chr3_1:87938978-87938997 None:intergenic 15.0%
!!! TCTTTGTATGAATTTTATAA+CGG - chr3_1:87938980-87938999 Msa0384670:intron 15.0%
!! AAATCAAAACAATACATATT+AGG + chr3_1:87939264-87939283 None:intergenic 15.0%
!!! ATTTTCCTTTTTTAATGAAA+TGG - chr3_1:87939724-87939743 Msa0384670:intron 15.0%
!! ATTAAATAAATTTGTGTGTT+TGG - chr3_1:87939783-87939802 Msa0384670:intron 15.0%
!!! TTCAGTCATATTTTTTGAAT+AGG - chr3_1:87938455-87938474 Msa0384670:CDS 20.0%
!!! TCATATTTTTTGAATAGGTT+AGG - chr3_1:87938460-87938479 Msa0384670:CDS 20.0%
!!! CATATTTTTTGAATAGGTTA+GGG - chr3_1:87938461-87938480 Msa0384670:CDS 20.0%
!!! TAAAGTTATATTGCTTGTTT+TGG - chr3_1:87938838-87938857 Msa0384670:intron 20.0%
!!! CTTTGTATGAATTTTATAAC+GGG - chr3_1:87938981-87939000 Msa0384670:intron 20.0%
!! AACAAGATTTATAAAGGAAA+TGG + chr3_1:87939390-87939409 None:intergenic 20.0%
!! AATCAATACATAACAATCAA+AGG + chr3_1:87939702-87939721 None:intergenic 20.0%
!! TAAATAAAAGTAATGATAGG+AGG + chr3_1:87940277-87940296 None:intergenic 20.0%
!! GTGTAAATAAAAGTAATGAT+AGG + chr3_1:87940280-87940299 None:intergenic 20.0%
!! TCATAATATAGTTTATCCAA+AGG - chr3_1:87940456-87940475 Msa0384670:CDS 20.0%
!! CATAATATAGTTTATCCAAA+GGG - chr3_1:87940457-87940476 Msa0384670:CDS 20.0%
!!! TGTAGTTCAAGAAATTTTTA+TGG - chr3_1:87940810-87940829 Msa0384670:five_prime_UTR 20.0%
!!! GTAGTTCAAGAAATTTTTAT+GGG - chr3_1:87940811-87940830 Msa0384670:five_prime_UTR 20.0%
!!! TATTGAGAAAGATTTTGTAA+AGG - chr3_1:87941039-87941058 Msa0384670:five_prime_UTR 20.0%
! TCTTCATGTACCTAAATTAA+TGG - chr3_1:87937838-87937857 Msa0384670:three_prime_UTR 25.0%
! ATCTGAGAAAATTGATATTG+TGG - chr3_1:87938387-87938406 Msa0384670:CDS 25.0%
! ATTGAACATCATAAACTTGA+TGG - chr3_1:87938667-87938686 Msa0384670:intron 25.0%
! TTGAACATCATAAACTTGAT+GGG - chr3_1:87938668-87938687 Msa0384670:intron 25.0%
!!! TGTGTTATACCTACTTTTTT+AGG - chr3_1:87938782-87938801 Msa0384670:intron 25.0%
! AAAACATGCTAATGTAACAA+AGG + chr3_1:87939363-87939382 None:intergenic 25.0%
! GGTGAAAACAAGATTTATAA+AGG + chr3_1:87939396-87939415 None:intergenic 25.0%
! CAGGAAATAAAGTGAAAATA+CGG - chr3_1:87939440-87939459 Msa0384670:intron 25.0%
!!! TTCCCTTTTTAATTAAGTGT+AGG - chr3_1:87939541-87939560 Msa0384670:intron 25.0%
! CTCCTACACTTAATTAAAAA+GGG + chr3_1:87939546-87939565 None:intergenic 25.0%
! GGATTCCATTTCATTAAAAA+AGG + chr3_1:87939732-87939751 None:intergenic 25.0%
!! ATAATACCTTTAACTTTGAC+AGG - chr3_1:87940333-87940352 Msa0384670:CDS 25.0%
! GTTGCAAGAAAATAATGAAT+TGG - chr3_1:87940416-87940435 Msa0384670:CDS 25.0%
!! TGAAAAGTTTGTCTTATTCT+AGG - chr3_1:87940682-87940701 Msa0384670:exon 25.0%
!! TTTTTCTCTCTCTCTTTTTT+GGG + chr3_1:87940751-87940770 None:intergenic 25.0%
!! ATTTTTCTCTCTCTCTTTTT+TGG + chr3_1:87940752-87940771 None:intergenic 25.0%
!!! GGTTTGTTATACTTTTTAAC+TGG - chr3_1:87940832-87940851 Msa0384670:five_prime_UTR 25.0%
! GATCAAAAGACAAGTTAAAT+TGG + chr3_1:87940861-87940880 None:intergenic 25.0%
!! TCATGACAATTTTCTCATAT+CGG - chr3_1:87940879-87940898 Msa0384670:five_prime_UTR 25.0%
! AACTTTGTGCAAGAAAATTT+GGG + chr3_1:87940982-87941001 None:intergenic 25.0%
! TAACTTTGTGCAAGAAAATT+TGG + chr3_1:87940983-87941002 None:intergenic 25.0%
CTGTGTAATGAAGAAATTAC+AGG + chr3_1:87937605-87937624 None:intergenic 30.0%
CTGTAATTTCTTCATTACAC+AGG - chr3_1:87937603-87937622 Msa0384670:three_prime_UTR 30.0%
ATTTCAATCCCTAGATTTCT+AGG - chr3_1:87937805-87937824 Msa0384670:three_prime_UTR 30.0%
TTTCAATCCCTAGATTTCTA+GGG - chr3_1:87937806-87937825 Msa0384670:three_prime_UTR 30.0%
! TTCTTCGTTGGGTTTTTATT+AGG - chr3_1:87938085-87938104 Msa0384670:CDS 30.0%
TTATTAGGTATGTTCCCTTT+CGG - chr3_1:87938100-87938119 Msa0384670:CDS 30.0%
GCGATTATTGAGAATTGATT+TGG + chr3_1:87938215-87938234 None:intergenic 30.0%
GATAAGGATAAGAAGAGTAA+GGG - chr3_1:87938280-87938299 Msa0384670:intron 30.0%
ATAATGAAAAGCTGAAAGAG+AGG - chr3_1:87938353-87938372 Msa0384670:CDS 30.0%
TAATGAAAAGCTGAAAGAGA+GGG - chr3_1:87938354-87938373 Msa0384670:CDS 30.0%
AAAAATATGACTGAAAAGCG+CGG + chr3_1:87938450-87938469 None:intergenic 30.0%
TGCTGAATTGTTGAGAAAAA+CGG - chr3_1:87938555-87938574 Msa0384670:intron 30.0%
AAAAGTAGGTATAACACAAC+AGG + chr3_1:87938780-87938799 None:intergenic 30.0%
!!! AGTTATATTGCTTGTTTTGG+AGG - chr3_1:87938841-87938860 Msa0384670:intron 30.0%
AAAAAACAATCATCAAGGGA+GGG + chr3_1:87938927-87938946 None:intergenic 30.0%
AAAAAAACAATCATCAAGGG+AGG + chr3_1:87938928-87938947 None:intergenic 30.0%
!! TGTATGAATTTTATAACGGG+CGG - chr3_1:87938984-87939003 Msa0384670:intron 30.0%
AGTTATGAAGGTGACATTTA+CGG + chr3_1:87939121-87939140 None:intergenic 30.0%
TCGAGAATTTATGAAGGAAA+AGG + chr3_1:87939417-87939436 None:intergenic 30.0%
!! CTGTTTTCGAGAATTTATGA+AGG + chr3_1:87939423-87939442 None:intergenic 30.0%
CTTCATAAATTCTCGAAAAC+AGG - chr3_1:87939421-87939440 Msa0384670:intron 30.0%
!!! ACTTTTTTCCCTTCCATTTT+CGG + chr3_1:87939513-87939532 None:intergenic 30.0%
CCTCCTACACTTAATTAAAA+AGG + chr3_1:87939547-87939566 None:intergenic 30.0%
!! CCTTTTTAATTAAGTGTAGG+AGG - chr3_1:87939544-87939563 Msa0384670:intron 30.0%
TTTAATTAAGTGTAGGAGGA+AGG - chr3_1:87939548-87939567 Msa0384670:intron 30.0%
AAAAACACAATTGCCAAAGA+TGG + chr3_1:87939679-87939698 None:intergenic 30.0%
AAGTTAAATGATGTACACAG+AGG + chr3_1:87939907-87939926 None:intergenic 30.0%
TTGGATGACACAATTCATAA+AGG + chr3_1:87939947-87939966 None:intergenic 30.0%
CAGTTCAACATTAGAACATA+GGG + chr3_1:87939990-87940009 None:intergenic 30.0%
!!! AACTGGTTTTATAGTCGTTT+TGG - chr3_1:87940005-87940024 Msa0384670:CDS 30.0%
AGATTTCATGTTGATATGTC+TGG - chr3_1:87940146-87940165 Msa0384670:CDS 30.0%
GATTTCATGTTGATATGTCT+GGG - chr3_1:87940147-87940166 Msa0384670:CDS 30.0%
TATCAGATAATACGAATTGC+AGG + chr3_1:87940316-87940335 None:intergenic 30.0%
TTCCACCAATTGTTCAATAA+AGG + chr3_1:87940365-87940384 None:intergenic 30.0%
! TTCATTATTTTCTTGCAACC+CGG + chr3_1:87940415-87940434 None:intergenic 30.0%
ATATAGTTTATCCAAAGGGT+TGG - chr3_1:87940461-87940480 Msa0384670:CDS 30.0%
TATCACACACTCTATAGAAT+TGG + chr3_1:87940536-87940555 None:intergenic 30.0%
AATTCTATAGAGTGTGTGAT+AGG - chr3_1:87940535-87940554 Msa0384670:CDS 30.0%
AACTGAGATTTAGAAGTTAG+CGG + chr3_1:87940624-87940643 None:intergenic 30.0%
!!! CTAAATCTCAGTTTTGTTAG+TGG - chr3_1:87940631-87940650 Msa0384670:CDS 30.0%
GGATACTCTTACAATTACAA+CGG + chr3_1:87940708-87940727 None:intergenic 30.0%
!! TTTTCTCTCTCTCTTTTTTG+GGG + chr3_1:87940750-87940769 None:intergenic 30.0%
AGAAAAATTCCCCATTCTTT+GGG - chr3_1:87940764-87940783 Msa0384670:five_prime_UTR 30.0%
TCTTGAACTACATGAATTTC+AGG + chr3_1:87940802-87940821 None:intergenic 30.0%
! CATGACAATTTTCTCATATC+GGG - chr3_1:87940880-87940899 Msa0384670:five_prime_UTR 30.0%
TTCTTCATTACACAGGTTAC+CGG - chr3_1:87937610-87937629 Msa0384670:three_prime_UTR 35.0%
! TTATGAGTATGGATTCGGTT+CGG + chr3_1:87937651-87937670 None:intergenic 35.0%
TGTGGTTATGAGTATGGATT+CGG + chr3_1:87937656-87937675 None:intergenic 35.0%
CACAAACTTCCATCTTCAAA+CGG - chr3_1:87937950-87937969 Msa0384670:three_prime_UTR 35.0%
TCGTCGTTTCAGAGATTAAT+CGG - chr3_1:87937992-87938011 Msa0384670:three_prime_UTR 35.0%
CATGAATGAGATTACCGAAA+GGG + chr3_1:87938117-87938136 None:intergenic 35.0%
TCATGAATGAGATTACCGAA+AGG + chr3_1:87938118-87938137 None:intergenic 35.0%
! TTGTTTTCACGATGTTGTTG+AGG + chr3_1:87938145-87938164 None:intergenic 35.0%
!! ATTGATTTGGCATCAGATTG+TGG + chr3_1:87938202-87938221 None:intergenic 35.0%
GGATAAGGATAAGAAGAGTA+AGG - chr3_1:87938279-87938298 Msa0384670:intron 35.0%
AGAAAATTGATATTGTGGCG+AGG - chr3_1:87938392-87938411 Msa0384670:CDS 35.0%
!!! TTTTTTGAATAGGTTAGGGC+AGG - chr3_1:87938465-87938484 Msa0384670:CDS 35.0%
GGAAATGAATTCTGCTTCTA+TGG - chr3_1:87938528-87938547 Msa0384670:intron 35.0%
GCTGAATTGTTGAGAAAAAC+GGG - chr3_1:87938556-87938575 Msa0384670:intron 35.0%
GGTGTGTACTAAGAATTCAA+CGG - chr3_1:87938597-87938616 Msa0384670:intron 35.0%
TAAGAATTCAACGGATGTGA+AGG - chr3_1:87938606-87938625 Msa0384670:intron 35.0%
TCATCAGAGGAATAAAGCAT+TGG - chr3_1:87938639-87938658 Msa0384670:intron 35.0%
TTCAGACAATCAGAGATATC+AGG - chr3_1:87938737-87938756 Msa0384670:intron 35.0%
!!! TATTGCTTGTTTTGGAGGTA+TGG - chr3_1:87938846-87938865 Msa0384670:intron 35.0%
ATGGTTGTTGTAATTGTTCG+TGG - chr3_1:87938865-87938884 Msa0384670:intron 35.0%
TGGTTGTTGTAATTGTTCGT+GGG - chr3_1:87938866-87938885 Msa0384670:intron 35.0%
!! ATTTGGGAGTTTGGGTTTTT+GGG - chr3_1:87938895-87938914 Msa0384670:intron 35.0%
!!! GTATGAATTTTATAACGGGC+GGG - chr3_1:87938985-87939004 Msa0384670:intron 35.0%
CTTGTGAATACCCAAAAACA+AGG + chr3_1:87939309-87939328 None:intergenic 35.0%
! AATGACGTATTGACCGAAAA+TGG - chr3_1:87939497-87939516 Msa0384670:intron 35.0%
GTAGATACAACTCAGAAAAC+TGG + chr3_1:87939821-87939840 None:intergenic 35.0%
! GTTTTCTGAGTTGTATCTAC+TGG - chr3_1:87939821-87939840 Msa0384670:CDS 35.0%
AAATGATGTACACAGAGGAT+GGG + chr3_1:87939902-87939921 None:intergenic 35.0%
TAAATGATGTACACAGAGGA+TGG + chr3_1:87939903-87939922 None:intergenic 35.0%
TAGGAACTGAATGAACAAGT+TGG + chr3_1:87939966-87939985 None:intergenic 35.0%
CAACATTAGAACATAGGGTT+AGG + chr3_1:87939985-87940004 None:intergenic 35.0%
CCAGTTCAACATTAGAACAT+AGG + chr3_1:87939991-87940010 None:intergenic 35.0%
CCTATGTTCTAATGTTGAAC+TGG - chr3_1:87939988-87940007 Msa0384670:CDS 35.0%
!! TTTATAGTCGTTTTGGCACT+TGG - chr3_1:87940012-87940031 Msa0384670:CDS 35.0%
!! AAAATAGCCTTGTTCTTGCT+TGG + chr3_1:87940056-87940075 None:intergenic 35.0%
! AAGCAAGAACAAGGCTATTT+TGG - chr3_1:87940055-87940074 Msa0384670:CDS 35.0%
!! AAGAACAAGGCTATTTTGGA+GGG - chr3_1:87940059-87940078 Msa0384670:CDS 35.0%
CAATTAGACTCAGTGAAAGA+GGG - chr3_1:87940239-87940258 Msa0384670:CDS 35.0%
ATACGAATTGCAGGTGATAT+GGG + chr3_1:87940307-87940326 None:intergenic 35.0%
AATACGAATTGCAGGTGATA+TGG + chr3_1:87940308-87940327 None:intergenic 35.0%
GACCACCTTTATTGAACAAT+TGG - chr3_1:87940357-87940376 Msa0384670:CDS 35.0%
CACCAATTGTTCAATAAAGG+TGG + chr3_1:87940362-87940381 None:intergenic 35.0%
CACCTTTATTGAACAATTGG+TGG - chr3_1:87940360-87940379 Msa0384670:CDS 35.0%
TATAGAGTGTGTGATAGGTA+TGG - chr3_1:87940540-87940559 Msa0384670:CDS 35.0%
!!! TTTCTCTCTCTCTTTTTTGG+GGG + chr3_1:87940749-87940768 None:intergenic 35.0%
GAGAAAAATTCCCCATTCTT+TGG - chr3_1:87940763-87940782 Msa0384670:five_prime_UTR 35.0%
!! ATGAATTTCAGGTTGTTGCT+GGG + chr3_1:87940791-87940810 None:intergenic 35.0%
!! TAACCTGTTTCTGTCTTGTT+GGG + chr3_1:87940947-87940966 None:intergenic 35.0%
TTGCACAAAGTTATTTGCAG+AGG - chr3_1:87940990-87941009 Msa0384670:five_prime_UTR 35.0%
!! TCCCTAGATTTCTAGGGTTT+CGG - chr3_1:87937812-87937831 Msa0384670:three_prime_UTR 40.0%
TCCGAAACCCTAGAAATCTA+GGG + chr3_1:87937816-87937835 None:intergenic 40.0%
ATCCGAAACCCTAGAAATCT+AGG + chr3_1:87937817-87937836 None:intergenic 40.0%
CGGAATGACGCCATTAATTT+AGG + chr3_1:87937851-87937870 None:intergenic 40.0%
AATTAATGGCGTCATTCCGA+CGG - chr3_1:87937852-87937871 Msa0384670:three_prime_UTR 40.0%
GAAGATGGAAGTTTGTGAGA+TGG + chr3_1:87937947-87937966 None:intergenic 40.0%
GAGTAGTTTCCGTTTGAAGA+TGG + chr3_1:87937962-87937981 None:intergenic 40.0%
TCGTTTCAGAGATTAATCGG+TGG - chr3_1:87937995-87938014 Msa0384670:three_prime_UTR 40.0%
ATGCGACGATACAATCGAAA+GGG - chr3_1:87938025-87938044 Msa0384670:exon 40.0%
GATACAATCGAAAGGGACAA+TGG - chr3_1:87938032-87938051 Msa0384670:CDS 40.0%
! AATGGCGAAAAGTTGCTTTC+AGG - chr3_1:87938050-87938069 Msa0384670:CDS 40.0%
! TGAAAAGCGCGGTTATAAGT+CGG + chr3_1:87938439-87938458 None:intergenic 40.0%
GAAAAACGGGTGTGATGTAT+AGG - chr3_1:87938569-87938588 Msa0384670:intron 40.0%
TTGTTCGTGGGATTGTGATT+TGG - chr3_1:87938878-87938897 Msa0384670:intron 40.0%
TGTTCGTGGGATTGTGATTT+GGG - chr3_1:87938879-87938898 Msa0384670:intron 40.0%
! GGATTGTGATTTGGGAGTTT+GGG - chr3_1:87938887-87938906 Msa0384670:intron 40.0%
!! GATTTGGGAGTTTGGGTTTT+TGG - chr3_1:87938894-87938913 Msa0384670:intron 40.0%
CCGTTAGACTACAAGTGTAT+CGG + chr3_1:87939013-87939032 None:intergenic 40.0%
CCGATACACTTGTAGTCTAA+CGG - chr3_1:87939010-87939029 Msa0384670:intron 40.0%
TACACTTGTAGTCTAACGGT+TGG - chr3_1:87939014-87939033 Msa0384670:intron 40.0%
TCTGCATTATCCAATGAGTC+TGG - chr3_1:87939048-87939067 Msa0384670:intron 40.0%
GGTTACAGTTATTGAGGCAT+TGG - chr3_1:87939072-87939091 Msa0384670:intron 40.0%
!! TACAGTTATTGAGGCATTGG+TGG - chr3_1:87939075-87939094 Msa0384670:intron 40.0%
TTGTCGGTAGCAAGTTATGA+AGG + chr3_1:87939133-87939152 None:intergenic 40.0%
!! ATAACTTGCTACCGACAAGT+TGG - chr3_1:87939135-87939154 Msa0384670:intron 40.0%
CTCAAGAACAACCAACTTGT+CGG + chr3_1:87939149-87939168 None:intergenic 40.0%
!! ACAAGTTGGTTGTTCTTGAG+AGG - chr3_1:87939149-87939168 Msa0384670:intron 40.0%
GTTCTTGAGAGGAGTTAATG+TGG - chr3_1:87939160-87939179 Msa0384670:intron 40.0%
GTTAATGTGGCCGAAATTTG+CGG - chr3_1:87939173-87939192 Msa0384670:intron 40.0%
!!! TGACTAATGCGCCTTGTTTT+TGG - chr3_1:87939295-87939314 Msa0384670:intron 40.0%
!!! GACTAATGCGCCTTGTTTTT+GGG - chr3_1:87939296-87939315 Msa0384670:intron 40.0%
! ACGTATTGACCGAAAATGGA+AGG - chr3_1:87939501-87939520 Msa0384670:intron 40.0%
! CGTATTGACCGAAAATGGAA+GGG - chr3_1:87939502-87939521 Msa0384670:intron 40.0%
ATTAAGTGTAGGAGGAAGGT+AGG - chr3_1:87939552-87939571 Msa0384670:intron 40.0%
TGAACCTTCATTGAAGCATG+TGG + chr3_1:87939605-87939624 None:intergenic 40.0%
GCTTCAATGAAGGTTCATAG+TGG - chr3_1:87939608-87939627 Msa0384670:intron 40.0%
ACACAATTGCCAAAGATGGT+TGG + chr3_1:87939675-87939694 None:intergenic 40.0%
!! CAAGAACAAGGCTATTTTGG+AGG - chr3_1:87940058-87940077 Msa0384670:CDS 40.0%
ATTCAACAGCACAATCCTGT+GGG - chr3_1:87940175-87940194 Msa0384670:CDS 40.0%
GCCCTACTTCAAATCCTATA+CGG - chr3_1:87940216-87940235 Msa0384670:CDS 40.0%
! GCCGTATAGGATTTGAAGTA+GGG + chr3_1:87940220-87940239 None:intergenic 40.0%
! TGCCGTATAGGATTTGAAGT+AGG + chr3_1:87940221-87940240 None:intergenic 40.0%
ACTGAGTCTAATTGCCGTAT+AGG + chr3_1:87940233-87940252 None:intergenic 40.0%
GCAATTAGACTCAGTGAAAG+AGG - chr3_1:87940238-87940257 Msa0384670:CDS 40.0%
TACGAATTGCAGGTGATATG+GGG + chr3_1:87940306-87940325 None:intergenic 40.0%
TGGTCTCCTGTCAAAGTTAA+AGG + chr3_1:87940342-87940361 None:intergenic 40.0%
GAAGATGAGAGTCAAATGGA+AGG - chr3_1:87940382-87940401 Msa0384670:CDS 40.0%
! ATTATTTTCTTGCAACCCGG+TGG + chr3_1:87940412-87940431 None:intergenic 40.0%
CACACACTCTATAGAATTGG+TGG + chr3_1:87940533-87940552 None:intergenic 40.0%
!! CATGAATTTCAGGTTGTTGC+TGG + chr3_1:87940792-87940811 None:intergenic 40.0%
!! GTAACCTGTTTCTGTCTTGT+TGG + chr3_1:87940948-87940967 None:intergenic 40.0%
CACAAAGTTATTTGCAGAGG+TGG - chr3_1:87940993-87941012 Msa0384670:five_prime_UTR 40.0%
GGTGTCTGTGGTTATGAGTA+TGG + chr3_1:87937662-87937681 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAAGA+CGG + chr3_1:87937683-87937702 None:intergenic 45.0%
TCTCTCTCTTCACACGAAGA+AGG - chr3_1:87937706-87937725 Msa0384670:three_prime_UTR 45.0%
CACGACCGTCACTACATAAA+CGG - chr3_1:87937893-87937912 Msa0384670:three_prime_UTR 45.0%
AGTTTGTGAGATGGAGACGA+CGG + chr3_1:87937938-87937957 None:intergenic 45.0%
CATGCGACGATACAATCGAA+AGG - chr3_1:87938024-87938043 Msa0384670:exon 45.0%
! TGCGTTCTCTGTTTCTTCGT+TGG - chr3_1:87938073-87938092 Msa0384670:CDS 45.0%
! GCGTTCTCTGTTTCTTCGTT+GGG - chr3_1:87938074-87938093 Msa0384670:CDS 45.0%
! TTGAAAAAGCACGTCAGCGT+CGG - chr3_1:87938238-87938257 Msa0384670:intron 45.0%
! TGGTGGTGATGATGAGGATA+AGG - chr3_1:87938264-87938283 Msa0384670:intron 45.0%
CTCAAACATGAACGCTGAGA+AGG - chr3_1:87938330-87938349 Msa0384670:CDS 45.0%
! ATAGGTTAGGGCAGGTTTTG+AGG - chr3_1:87938473-87938492 Msa0384670:CDS 45.0%
GGGTGTGATGTATAGGCATT+TGG - chr3_1:87938576-87938595 Msa0384670:intron 45.0%
TCAACGGATGTGAAGGATAG+AGG - chr3_1:87938613-87938632 Msa0384670:intron 45.0%
AGGATAGAGGAGTTCATCAG+AGG - chr3_1:87938626-87938645 Msa0384670:intron 45.0%
! GGGATTGTGATTTGGGAGTT+TGG - chr3_1:87938886-87938905 Msa0384670:intron 45.0%
GCATTATCCAATGAGTCTGG+CGG - chr3_1:87939051-87939070 Msa0384670:intron 45.0%
TCTGGCGGTTACAGTTATTG+AGG - chr3_1:87939066-87939085 Msa0384670:intron 45.0%
GCCGAAATTTGCGGTTCTTT+GGG - chr3_1:87939182-87939201 Msa0384670:intron 45.0%
CCCCAAAGAACCGCAAATTT+CGG + chr3_1:87939186-87939205 None:intergenic 45.0%
CCGAAATTTGCGGTTCTTTG+GGG - chr3_1:87939183-87939202 Msa0384670:intron 45.0%
CGAAATTTGCGGTTCTTTGG+GGG - chr3_1:87939184-87939203 Msa0384670:intron 45.0%
! GGTTCTTTGGGGGATCAATT+CGG - chr3_1:87939194-87939213 Msa0384670:intron 45.0%
! GTTCTTTGGGGGATCAATTC+GGG - chr3_1:87939195-87939214 Msa0384670:intron 45.0%
! TTCTTTGGGGGATCAATTCG+GGG - chr3_1:87939196-87939215 Msa0384670:intron 45.0%
! TCGGGGTTTTTACATACGCA+AGG - chr3_1:87939213-87939232 Msa0384670:intron 45.0%
TGGGTATTCACAAGCTTGTC+TGG - chr3_1:87939315-87939334 Msa0384670:intron 45.0%
GGGTATTCACAAGCTTGTCT+GGG - chr3_1:87939316-87939335 Msa0384670:intron 45.0%
ACTTGGCTTCCATTGCATAC+CGG + chr3_1:87940086-87940105 None:intergenic 45.0%
CATTCAACAGCACAATCCTG+TGG - chr3_1:87940174-87940193 Msa0384670:CDS 45.0%
! CTCAGTGAAAGAGGGTTTTC+AGG - chr3_1:87940247-87940266 Msa0384670:CDS 45.0%
ACGAATTGCAGGTGATATGG+GGG + chr3_1:87940305-87940324 None:intergenic 45.0%
GGTGGAAGATGAGAGTCAAA+TGG - chr3_1:87940378-87940397 Msa0384670:CDS 45.0%
TTCTCAAGCATCCAACCCTT+TGG + chr3_1:87940475-87940494 None:intergenic 45.0%
TGGTGGAAGATTACTTGACG+TGG + chr3_1:87940516-87940535 None:intergenic 45.0%
!!! TCTCTCTCTTTTTTGGGGGA+GGG + chr3_1:87940745-87940764 None:intergenic 45.0%
CAACATAGCATTAGTGCCAC+TGG + chr3_1:87940924-87940943 None:intergenic 45.0%
TTGCCCAACAAGACAGAAAC+AGG - chr3_1:87940941-87940960 Msa0384670:five_prime_UTR 45.0%
TCGGATCGAGGTTGAAACTC+CGG + chr3_1:87937632-87937651 None:intergenic 50.0%
!! TATGGATTCGGTTCGGATCG+AGG + chr3_1:87937644-87937663 None:intergenic 50.0%
ATTCCGACGGACGTTATCTC+CGG - chr3_1:87937865-87937884 Msa0384670:three_prime_UTR 50.0%
TAGTGACGGTCGTGATATGC+CGG + chr3_1:87937887-87937906 None:intergenic 50.0%
GACCGTCACTACATAAACGG+CGG - chr3_1:87937896-87937915 Msa0384670:three_prime_UTR 50.0%
CACCGCCGTTTATGTAGTGA+CGG + chr3_1:87937901-87937920 None:intergenic 50.0%
AGATGGAGACGACGGTGAAA+AGG + chr3_1:87937930-87937949 None:intergenic 50.0%
!!! GTTAGGGCAGGTTTTGAGGT+TGG - chr3_1:87938477-87938496 Msa0384670:CDS 50.0%
TCCACCACCACCCATAAAAG+CGG + chr3_1:87938511-87938530 None:intergenic 50.0%
ACTGTAACCGCCAGACTCAT+TGG + chr3_1:87939061-87939080 None:intergenic 50.0%
ACGGCGCACAAGTGTTTAAC+TGG + chr3_1:87939102-87939121 None:intergenic 50.0%
GGCCGAAATTTGCGGTTCTT+TGG - chr3_1:87939181-87939200 Msa0384670:intron 50.0%
CAGGCCACATGCTTCAATGA+AGG - chr3_1:87939598-87939617 Msa0384670:intron 50.0%
! CCAAAGATGGTTGGCTCAGT+AGG + chr3_1:87939666-87939685 None:intergenic 50.0%
CCTACTGAGCCAACCATCTT+TGG - chr3_1:87939663-87939682 Msa0384670:intron 50.0%
!! GTTCTTGCTTGGTGCAAGCA+TGG + chr3_1:87940045-87940064 None:intergenic 50.0%
GCTTGCACCAAGCAAGAACA+AGG - chr3_1:87940046-87940065 Msa0384670:CDS 50.0%
!! CAAGGCTATTTTGGAGGGTC+CGG - chr3_1:87940064-87940083 Msa0384670:CDS 50.0%
TGCAATGGAAGCCAAGTGCT+TGG - chr3_1:87940089-87940108 Msa0384670:CDS 50.0%
GCAATGGAAGCCAAGTGCTT+GGG - chr3_1:87940090-87940109 Msa0384670:CDS 50.0%
TTGTATGCCACCCAAGCACT+TGG + chr3_1:87940103-87940122 None:intergenic 50.0%
CAATCCTGTGGGATCCAAAG+CGG - chr3_1:87940186-87940205 Msa0384670:CDS 50.0%
AATTGCAGGTGATATGGGGG+TGG + chr3_1:87940302-87940321 None:intergenic 50.0%
TCAAATGGAAGGTTCGCCAC+CGG - chr3_1:87940393-87940412 Msa0384670:CDS 50.0%
TGACGTGGATGACAGCATCT+AGG + chr3_1:87940501-87940520 None:intergenic 50.0%
!!! TCTCTCTTTTTTGGGGGAGG+GGG + chr3_1:87940743-87940762 None:intergenic 50.0%
!!! CTCTCTCTTTTTTGGGGGAG+GGG + chr3_1:87940744-87940763 None:intergenic 50.0%
!!! CTCTCTCTCTTTTTTGGGGG+AGG + chr3_1:87940746-87940765 None:intergenic 50.0%
TTGCTGGGACCCAAAGAATG+GGG + chr3_1:87940776-87940795 None:intergenic 50.0%
GTTGCTGGGACCCAAAGAAT+GGG + chr3_1:87940777-87940796 None:intergenic 50.0%
TGTTGCTGGGACCCAAAGAA+TGG + chr3_1:87940778-87940797 None:intergenic 50.0%
! CATAGCATTAGTGCCACTGG+TGG + chr3_1:87940921-87940940 None:intergenic 50.0%
GAGAGAGAAGACGGTGTCTG+TGG + chr3_1:87937674-87937693 None:intergenic 55.0%
ATGCCGGAGATAACGTCCGT+CGG + chr3_1:87937871-87937890 None:intergenic 55.0%
CGTCACTACATAAACGGCGG+TGG - chr3_1:87937899-87937918 Msa0384670:three_prime_UTR 55.0%
TGGAGACGACGGTGAAAAGG+CGG + chr3_1:87937927-87937946 None:intergenic 55.0%
! AAAAAGCACGTCAGCGTCGG+TGG - chr3_1:87938241-87938260 Msa0384670:intron 55.0%
ACCACCACCCATAAAAGCGG+CGG + chr3_1:87938508-87938527 None:intergenic 55.0%
ATGTGGCCTGTCTCGACCAT+GGG + chr3_1:87939588-87939607 None:intergenic 55.0%
TTGGAGGGTCCGGTATGCAA+TGG - chr3_1:87940074-87940093 Msa0384670:CDS 55.0%
ATGGAAGCCAAGTGCTTGGG+TGG - chr3_1:87940093-87940112 Msa0384670:CDS 55.0%
CAAATGGAAGGTTCGCCACC+GGG - chr3_1:87940394-87940413 Msa0384670:CDS 55.0%
!!! TTTTTTGGGGGAGGGGGCTA+AGG + chr3_1:87940737-87940756 None:intergenic 55.0%
GCTCATCAGTTAGCCACCAG+TGG - chr3_1:87940905-87940924 Msa0384670:five_prime_UTR 55.0%
!! CGGTGGTGGTGGTGATGATG+AGG - chr3_1:87938258-87938277 Msa0384670:intron 60.0%
ACCACCCATAAAAGCGGCGG+CGG + chr3_1:87938505-87938524 None:intergenic 60.0%
!!! GCCGCTTTTATGGGTGGTGG+TGG - chr3_1:87938507-87938526 Msa0384670:CDS 60.0%
! GGTAGGTTGACCCACTCCCA+TGG - chr3_1:87939569-87939588 Msa0384670:intron 60.0%
CCTGTCTCGACCATGGGAGT+GGG + chr3_1:87939582-87939601 None:intergenic 60.0%
CATGTGGCCTGTCTCGACCA+TGG + chr3_1:87939589-87939608 None:intergenic 60.0%
! CTTGGTGCAAGCATGGCGAC+AGG + chr3_1:87940038-87940057 None:intergenic 60.0%
TCCTGTGGGATCCAAAGCGG+TGG - chr3_1:87940189-87940208 Msa0384670:CDS 60.0%
TGTGGGATCCAAAGCGGTGG+CGG - chr3_1:87940192-87940211 Msa0384670:CDS 60.0%
!! AAGCACGTCAGCGTCGGTGG+TGG - chr3_1:87938244-87938263 Msa0384670:intron 65.0%
!!! TGGTGCCGCCGCCGCTTTTA+TGG - chr3_1:87938497-87938516 Msa0384670:CDS 65.0%
!!! GGTGCCGCCGCCGCTTTTAT+GGG - chr3_1:87938498-87938517 Msa0384670:CDS 65.0%
!!! GCCGCCGCTTTTATGGGTGG+TGG - chr3_1:87938504-87938523 Msa0384670:CDS 65.0%
CCCACTCCCATGGTCGAGAC+AGG - chr3_1:87939579-87939598 Msa0384670:intron 65.0%
GCCTGTCTCGACCATGGGAG+TGG + chr3_1:87939583-87939602 None:intergenic 65.0%
! GCCACCGCTTTGGATCCCAC+AGG + chr3_1:87940193-87940212 None:intergenic 65.0%
GGGAGGGGGCTAAGGATGAC+GGG + chr3_1:87940729-87940748 None:intergenic 65.0%
GGGGAGGGGGCTAAGGATGA+CGG + chr3_1:87940730-87940749 None:intergenic 65.0%
!! CACGTCAGCGTCGGTGGTGG+TGG - chr3_1:87938247-87938266 Msa0384670:intron 70.0%
!!! GCCGCCGCCGCTTTTATGGG+TGG - chr3_1:87938501-87938520 Msa0384670:CDS 70.0%
!! GTAGGGCGCCGCCACCGCTT+TGG + chr3_1:87940203-87940222 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87937436 87941116 87937436 ID=Msa0384670;Name=Msa0384670
chr3_1 mRNA 87937436 87941116 87937436 ID=Msa0384670-mRNA-1;Parent=Msa0384670;Name=Msa0384670-mRNA-1;_AED=0.00;_eAED=0.00;_QI=421|1|1|1|1|1|3|591|440
chr3_1 exon 87937436 87938197 87937436 ID=Msa0384670-mRNA-1:exon:23643;Parent=Msa0384670-mRNA-1
chr3_1 exon 87938284 87938533 87938284 ID=Msa0384670-mRNA-1:exon:23642;Parent=Msa0384670-mRNA-1
chr3_1 exon 87939794 87941116 87939794 ID=Msa0384670-mRNA-1:exon:23641;Parent=Msa0384670-mRNA-1
chr3_1 five_prime_UTR 87940696 87941116 87940696 ID=Msa0384670-mRNA-1:five_prime_utr;Parent=Msa0384670-mRNA-1
chr3_1 CDS 87939794 87940695 87939794 ID=Msa0384670-mRNA-1:cds;Parent=Msa0384670-mRNA-1
chr3_1 CDS 87938284 87938533 87938284 ID=Msa0384670-mRNA-1:cds;Parent=Msa0384670-mRNA-1
chr3_1 CDS 87938027 87938197 87938027 ID=Msa0384670-mRNA-1:cds;Parent=Msa0384670-mRNA-1
chr3_1 three_prime_UTR 87937436 87938026 87937436 ID=Msa0384670-mRNA-1:three_prime_utr;Parent=Msa0384670-mRNA-1
Gene Sequence

>Msa0384670

ATGGCGTCATTCCGACGGACGTTATCTCCGGCATATCACGACCGTCACTACATAAACGGCGGTGGTGCCGCCTTTTCACCGTCGTCTCCATCTCACAAACTTCCATCTTCAAACGGAAACTACTCTGCAATAGCTTCGTCGTTTCAGAGATTAATCGGTGGCGTTTTCATGCGACGATACAATCGAAAGGGACAATGGCGAAAAGTTGCTTTCAGGTGCGTTCTCTGTTTCTTCGTTGGGTTTTTATTAGGTATGTTCCCTTTCGGTAATCTCATTCATGAAATTCCTCAACAACATCGTGAAAACAACAACAATATCATTGCTTTTGATATCAATAAAACTCCACAATCTGATGCCAAATCAATTCTCAATAATCGCGTTTTGAAAAAGCACGTCAGCGTCGGTGGTGGTGGTGATGATGAGGATAAGGATAAGAAGAGTAAGGGTTTTTTGATTGAACAAGTAAGTTTGAGCTCAAACATGAACGCTGAGAAGGATAATGAAAAGCTGAAAGAGAGGGAATTGATCGAATCTGAGAAAATTGATATTGTGGCGAGGAAGCAATTGATTATTGTGACACCGACTTATAACCGCGCTTTTCAGTCATATTTTTTGAATAGGTTAGGGCAGGTTTTGAGGTTGGTGCCGCCGCCGCTTTTATGGGTGGTGGTGGAAATGAATTCTGCTTCTATGGAAACTGCTGAATTGTTGAGAAAAACGGGTGTGATGTATAGGCATTTGGTGTGTACTAAGAATTCAACGGATGTGAAGGATAGAGGAGTTCATCAGAGGAATAAAGCATTGGAGCATATTGAACATCATAAACTTGATGGGATTGTTTACTTTGCTGATGATGATAATGTATATTCTCTTGAATTGTTTCAGACAATCAGAGATATCAGTCGTTTTGGCACTTGGCCTGTCGCCATGCTTGCACCAAGCAAGAACAAGGCTATTTTGGAGGGTCCGGTATGCAATGGAAGCCAAGTGCTTGGGTGGCATACAAATGAGAAAAGTAAAAGACTTCGAAGATTTCATGTTGATATGTCTGGGTTTGCATTCAACAGCACAATCCTGTGGGATCCAAAGCGGTGGCGGCGCCCTACTTCAAATCCTATACGGCAATTAGACTCAGTGAAAGAGGGTTTTCAGGAGACCACCTTTATTGAACAATTGGTGGAAGATGAGAGTCAAATGGAAGGTTCGCCACCGGGTTGCAAGAAAATAATGAATTGGCATCTTCATTTGAATGTTCATAATATAGTTTATCCAAAGGGTTGGATGCTTGAGAAAAACCTAGATGCTGTCATCCACGTCAAGTAA

Protein sequence

>Msa0384670

MASFRRTLSPAYHDRHYINGGGAAFSPSSPSHKLPSSNGNYSAIASSFQRLIGGVFMRRYNRKGQWRKVAFRCVLCFFVGFLLGMFPFGNLIHEIPQQHRENNNNIIAFDINKTPQSDAKSILNNRVLKKHVSVGGGGDDEDKDKKSKGFLIEQVSLSSNMNAEKDNEKLKERELIESEKIDIVARKQLIIVTPTYNRAFQSYFLNRLGQVLRLVPPPLLWVVVEMNSASMETAELLRKTGVMYRHLVCTKNSTDVKDRGVHQRNKALEHIEHHKLDGIVYFADDDNVYSLELFQTIRDISRFGTWPVAMLAPSKNKAILEGPVCNGSQVLGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPTSNPIRQLDSVKEGFQETTFIEQLVEDESQMEGSPPGCKKIMNWHLHLNVHNIVYPKGWMLEKNLDAVIHVK*