Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552510 | GAU50913.1 | 93.262 | 282 | 19 | 0 | 3 | 284 | 32 | 313 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552510 | sp|Q9LZH9|RL7A2_ARATH | 88.031 | 259 | 28 | 1 | 26 | 284 | 1 | 256 | 8.33e-169 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552510 | A0A2Z6P7X9 | 93.262 | 282 | 19 | 0 | 3 | 284 | 32 | 313 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0128330 | Msa0552510 | 0.803235 | 3.840268e-49 | -8.615850e-47 |
| Msa0132460 | Msa0552510 | 0.832054 | 1.176536e-55 | -8.615850e-47 |
| Msa0182050 | Msa0552510 | 0.836776 | 7.676191e-57 | -8.615850e-47 |
| Msa0182100 | Msa0552510 | 0.836665 | 8.192268e-57 | -8.615850e-47 |
| Msa0233550 | Msa0552510 | 0.812940 | 3.291369e-51 | -8.615850e-47 |
| Msa0426250 | Msa0552510 | 0.807084 | 6.007714e-50 | -8.615850e-47 |
| Msa0277600 | Msa0552510 | 0.848871 | 4.648001e-60 | -8.615850e-47 |
| Msa0547920 | Msa0552510 | 0.831744 | 1.403135e-55 | -8.615850e-47 |
| Msa0552510 | Msa0568380 | 0.816719 | 4.784297e-52 | -8.615850e-47 |
| Msa0552510 | Msa0574780 | 0.800869 | 1.177379e-48 | -8.615850e-47 |
| Msa0552510 | Msa0602900 | 0.836684 | 8.101938e-57 | -8.615850e-47 |
| Msa0552510 | Msa0619230 | 0.805675 | 1.190700e-49 | -8.615850e-47 |
| Msa0552510 | Msa0643960 | 0.832798 | 7.694714e-56 | -8.615850e-47 |
| Msa0552510 | Msa0708630 | 0.833891 | 4.108584e-56 | -8.615850e-47 |
| Msa0552510 | Msa1085850 | 0.800454 | 1.430323e-48 | -8.615850e-47 |
| Msa0552510 | Msa1093500 | 0.810603 | 1.061907e-50 | -8.615850e-47 |
| Msa0552510 | Msa1235950 | 0.802154 | 6.417313e-49 | -8.615850e-47 |
| Msa0552510 | Msa1235980 | 0.801235 | 9.908183e-49 | -8.615850e-47 |
| Msa0552510 | Msa1317390 | 0.806367 | 8.513014e-50 | -8.615850e-47 |
| Msa0552510 | Msa1351020 | 0.810613 | 1.056596e-50 | -8.615850e-47 |
| Msa0552510 | Msa1351910 | 0.827579 | 1.447137e-54 | -8.615850e-47 |
| Msa0552510 | Msa1390760 | 0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0552510 | Msa1407550 | 0.802056 | 6.722901e-49 | -8.615850e-47 |
| Msa0552510 | Msa1424570 | 0.800768 | 1.234486e-48 | -8.615850e-47 |
| Msa0552510 | Msa1462580 | 0.821665 | 3.578403e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552510 | MtrunA17_Chr4g0037721 | 99.614 | 259 | 1 | 0 | 26 | 284 | 1 | 259 | 0.0 | 521 |
| Msa0552510 | MtrunA17_Chr7g0224411 | 93.077 | 260 | 17 | 1 | 26 | 284 | 1 | 260 | 4.48e-178 | 491 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0552510 | AT3G62870.1 | 88.031 | 259 | 28 | 1 | 26 | 284 | 1 | 256 | 8.47e-170 | 470 |
| Msa0552510 | AT2G47610.1 | 87.552 | 241 | 30 | 0 | 44 | 284 | 17 | 257 | 7.26e-161 | 447 |
Find 93 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTCTTGGCTTGGGATT+TGG | 0.209141 | 4_1:-49193730 | None:intergenic |
| TACCTCTGGCGACAGAATTT+TGG | 0.230393 | 4_1:+49193971 | Msa0552510:three_prime_UTR |
| TTGAGTAAATAACAATAAAT+TGG | 0.237235 | 4_1:-49193832 | None:intergenic |
| AGGCCATACTTCACATTAAT+AGG | 0.264776 | 4_1:-49193109 | None:intergenic |
| CTTTGCCTTGGTCTTGGCTT+GGG | 0.278418 | 4_1:-49193736 | None:intergenic |
| CAGGGTCCTAGAGGCGATTA+AGG | 0.309642 | 4_1:+49193556 | Msa0552510:CDS |
| CCTTTCCTTTGCCTTGGTCT+TGG | 0.313711 | 4_1:-49193742 | None:intergenic |
| CTTCGGCCACTTCACGAATC+TGG | 0.319581 | 4_1:-49192047 | None:intergenic |
| CCTTTGCCTTGGTCTTGGCT+TGG | 0.320697 | 4_1:-49193737 | None:intergenic |
| GAGAAGCGTCCAAAGCAATT+TGG | 0.321546 | 4_1:+49191989 | Msa0552510:CDS |
| TTCTTCTTTGAAGCTGCAAC+TGG | 0.338108 | 4_1:-49191842 | None:intergenic |
| TTGCCCTTAACAATACAGTA+TGG | 0.340642 | 4_1:-49193355 | None:intergenic |
| AAGGGCTCAGGCGGAGGCTG+AGG | 0.340794 | 4_1:+49193063 | Msa0552510:CDS |
| CCTCCAATTCCAAATTGCTT+TGG | 0.359017 | 4_1:-49191998 | None:intergenic |
| AAGCCTATTAATGTGAAGTA+TGG | 0.361147 | 4_1:+49193106 | Msa0552510:CDS |
| CGTCCAAAGCAATTTGGAAT+TGG | 0.369614 | 4_1:+49191995 | Msa0552510:CDS |
| CATTCTCTGCGCAGCCTCCT+TGG | 0.371366 | 4_1:-49193772 | None:intergenic |
| TTCTTCTCAGCCTTGTCCTC+AGG | 0.377096 | 4_1:-49193025 | None:intergenic |
| CTCTGCACCTGAACGTTCTT+CGG | 0.382996 | 4_1:-49192064 | None:intergenic |
| GAAGTGGGGTGGTGGAATCA+TGG | 0.397393 | 4_1:+49193704 | Msa0552510:CDS |
| AATCCCATACTGTATTGTTA+AGG | 0.413635 | 4_1:+49193351 | Msa0552510:CDS |
| AATAAGCCTTTCCTTTGCCT+TGG | 0.418296 | 4_1:-49193748 | None:intergenic |
| TCTGGCTTCCAGCCTTGTGC+AGG | 0.421984 | 4_1:+49193320 | Msa0552510:CDS |
| TCCATCTTCCTGCACAAGGC+TGG | 0.428911 | 4_1:-49193328 | None:intergenic |
| TACAGGAAGAAGTGGGGTGG+TGG | 0.431668 | 4_1:+49193696 | Msa0552510:CDS |
| TCCAGCCTTGTGCAGGAAGA+TGG | 0.436588 | 4_1:+49193327 | Msa0552510:CDS |
| ACCCCATTGAATTAGTTGTC+TGG | 0.442276 | 4_1:+49193302 | Msa0552510:CDS |
| AGCCAGACAACTAATTCAAT+GGG | 0.443985 | 4_1:-49193304 | None:intergenic |
| TGAGGAGTACAGGAAGAAGT+GGG | 0.451890 | 4_1:+49193689 | Msa0552510:CDS |
| ATCCCATACTGTATTGTTAA+GGG | 0.456742 | 4_1:+49193352 | Msa0552510:CDS |
| TATAAAATGGGACTCCAACT+AGG | 0.466994 | 4_1:+49191624 | None:intergenic |
| AAGACAAAATGGAGTTCAGC+AGG | 0.470262 | 4_1:+49193537 | Msa0552510:CDS |
| ATGAGGAGTACAGGAAGAAG+TGG | 0.472066 | 4_1:+49193688 | Msa0552510:CDS |
| CGTGAGCAATCACGACAAGC+TGG | 0.479843 | 4_1:-49193273 | None:intergenic |
| CGTTTGTTATTTACAATAGC+CGG | 0.482373 | 4_1:+49193901 | Msa0552510:three_prime_UTR |
| CCAAAGCAATTTGGAATTGG+AGG | 0.482647 | 4_1:+49191998 | Msa0552510:CDS |
| TTTGAAAAGGGCTCAGGCGG+AGG | 0.488274 | 4_1:+49193057 | Msa0552510:CDS |
| TCAAGATACTTCTGAAGTAC+AGG | 0.489642 | 4_1:+49193002 | Msa0552510:CDS |
| AGTTTCCGCACCATTGCTGC+TGG | 0.490894 | 4_1:-49191696 | None:intergenic |
| AAGTGGGGTGGTGGAATCAT+GGG | 0.491130 | 4_1:+49193705 | Msa0552510:CDS |
| ATCATAAACAATATTACCTC+TGG | 0.492815 | 4_1:+49193957 | Msa0552510:three_prime_UTR |
| AAGCCAGACAACTAATTCAA+TGG | 0.495839 | 4_1:-49193305 | None:intergenic |
| TGAGGACAAGGCTGAGAAGA+AGG | 0.500213 | 4_1:+49193027 | Msa0552510:CDS |
| TTAGTGAACTGGTTCAAAGC+TGG | 0.502229 | 4_1:-49192124 | None:intergenic |
| ATATTGTTTATGATGAATCC+AGG | 0.507235 | 4_1:-49193948 | None:intergenic |
| GAAGTGGCCGAAGAACGTTC+AGG | 0.510705 | 4_1:+49192057 | Msa0552510:CDS |
| AGGGCTCAGGCGGAGGCTGA+GGG | 0.511302 | 4_1:+49193064 | Msa0552510:CDS |
| ATGACAAGTATGAGGAGTAC+AGG | 0.517239 | 4_1:+49193679 | Msa0552510:CDS |
| AATCTGGTCAAATCCCTCTT+CGG | 0.518321 | 4_1:-49192031 | None:intergenic |
| ATAAAATGGGACTCCAACTA+GGG | 0.525396 | 4_1:+49191625 | None:intergenic |
| GAAGTACAGGCCTGAGGACA+AGG | 0.533130 | 4_1:+49193015 | Msa0552510:CDS |
| ACAACAAACTTACACTTCCT+AGG | 0.547646 | 4_1:-49193384 | None:intergenic |
| CAGAATATAACACAACTCCT+AGG | 0.549453 | 4_1:-49193796 | None:intergenic |
| AGGTGCATTGCCACCGAAGA+GGG | 0.550648 | 4_1:+49192018 | Msa0552510:CDS |
| TGCCCTTAACAATACAGTAT+GGG | 0.553243 | 4_1:-49193354 | None:intergenic |
| TTTGGACGCTTCTCAAACAG+CGG | 0.554899 | 4_1:-49191980 | None:intergenic |
| TTGGACGCTTCTCAAACAGC+GGG | 0.558308 | 4_1:-49191979 | None:intergenic |
| CAAACTTACACTTCCTAGGC+GGG | 0.561796 | 4_1:-49193380 | None:intergenic |
| ATTTGACCAGATTCGTGAAG+TGG | 0.563086 | 4_1:+49192041 | Msa0552510:CDS |
| AAATTTCAATGACAAGTATG+AGG | 0.565347 | 4_1:+49193671 | Msa0552510:CDS |
| AGCATTAGCACCAGCAGCAA+TGG | 0.566182 | 4_1:+49191686 | Msa0552510:CDS |
| GTGAACTGGTTCAAAGCTGG+TGG | 0.574137 | 4_1:-49192121 | None:intergenic |
| TTCAGGTGCAGAGGAAGAAG+AGG | 0.574820 | 4_1:+49192074 | Msa0552510:CDS |
| ATGCCACCTTAATCGCCTCT+AGG | 0.580251 | 4_1:-49193562 | None:intergenic |
| GTTAAGGGCAAGGCCCGCCT+AGG | 0.589576 | 4_1:+49193367 | Msa0552510:CDS |
| GTGAGCAATCACGACAAGCT+GGG | 0.590287 | 4_1:-49193272 | None:intergenic |
| CGAAGAACGTTCAGGTGCAG+AGG | 0.592402 | 4_1:+49192065 | Msa0552510:CDS |
| CCAAGCCAAGACCAAGGCAA+AGG | 0.598075 | 4_1:+49193737 | Msa0552510:CDS |
| GATTTCCATCTTCCTGCACA+AGG | 0.600419 | 4_1:-49193332 | None:intergenic |
| ACGCTTCTCAAACAGCGGGT+TGG | 0.601848 | 4_1:-49191975 | None:intergenic |
| ATACTGTATTGTTAAGGGCA+AGG | 0.604440 | 4_1:+49193357 | Msa0552510:CDS |
| TGAGGTAGGTAACATGATTG+AGG | 0.604638 | 4_1:-49193129 | None:intergenic |
| ACAAGGCTGAGAAGAAGGAG+AGG | 0.612342 | 4_1:+49193032 | Msa0552510:CDS |
| AAAGGAAAGGCTTATTGCCA+AGG | 0.613232 | 4_1:+49193755 | Msa0552510:CDS |
| TGTTACCTACCTCATCGAGC+AGG | 0.615302 | 4_1:+49193138 | Msa0552510:CDS |
| AAGTATCTTGAACAAGCTTG+TGG | 0.617064 | 4_1:-49192990 | None:intergenic |
| GGCTGCGCAGAGAATGACCT+AGG | 0.619659 | 4_1:+49193779 | Msa0552510:CDS |
| CCAAGACCAAGGCAAAGGAA+AGG | 0.622185 | 4_1:+49193742 | Msa0552510:CDS |
| GAGTACAGGAAGAAGTGGGG+TGG | 0.625879 | 4_1:+49193693 | Msa0552510:CDS |
| GAGGAGTACAGGAAGAAGTG+GGG | 0.627370 | 4_1:+49193690 | Msa0552510:CDS |
| CTGGTCAAATCCCTCTTCGG+TGG | 0.631531 | 4_1:-49192028 | None:intergenic |
| GGAGTTCAGCAGGGTCCTAG+AGG | 0.633517 | 4_1:+49193547 | Msa0552510:CDS |
| TACCAAAATTCTGTCGCCAG+AGG | 0.645577 | 4_1:-49193973 | None:intergenic |
| GAGGTGCATTGCCACCGAAG+AGG | 0.649300 | 4_1:+49192017 | Msa0552510:CDS |
| GGAAAGGCTTATTGCCAAGG+AGG | 0.665686 | 4_1:+49193758 | Msa0552510:CDS |
| CAAATCCCAAGCCAAGACCA+AGG | 0.672977 | 4_1:+49193731 | Msa0552510:CDS |
| ACAAACTTACACTTCCTAGG+CGG | 0.677034 | 4_1:-49193381 | None:intergenic |
| GAAAGACAACCTGCTCGATG+AGG | 0.683651 | 4_1:-49193147 | None:intergenic |
| GACAACCTGCTCGATGAGGT+AGG | 0.683860 | 4_1:-49193143 | None:intergenic |
| AGACAAAATGGAGTTCAGCA+GGG | 0.687168 | 4_1:+49193538 | Msa0552510:CDS |
| GCTAATGCTCTGTGTCTGTG+CGG | 0.698939 | 4_1:-49191672 | None:intergenic |
| ACTTCTGAAGTACAGGCCTG+AGG | 0.703947 | 4_1:+49193009 | Msa0552510:CDS |
| GCCAGACAACTAATTCAATG+GGG | 0.748421 | 4_1:-49193303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTATTGTAATGTT+TGG | + | chr4_1:49192172-49192191 | Msa0552510:intron | 10.0% |
| !! | GTAAATTGTAAAATTAATAT+AGG | + | chr4_1:49192262-49192281 | Msa0552510:intron | 10.0% |
| !! | AAATAAATTATTGTAATGTT+TGG | + | chr4_1:49192172-49192191 | Msa0552510:intron | 10.0% |
| !! | GTAAATTGTAAAATTAATAT+AGG | + | chr4_1:49192262-49192281 | Msa0552510:intron | 10.0% |
| !!! | TTTTTGTAATATGTTAATTG+TGG | + | chr4_1:49192240-49192259 | Msa0552510:intron | 15.0% |
| !! | GTAAAATTAATATAGGATTT+CGG | + | chr4_1:49192269-49192288 | Msa0552510:intron | 15.0% |
| !! | ATAAAACATATCAGTTTAAA+TGG | - | chr4_1:49193633-49193652 | None:intergenic | 15.0% |
| !! | TTGAGTAAATAACAATAAAT+TGG | - | chr4_1:49193835-49193854 | None:intergenic | 15.0% |
| !!! | TTTTTGTAATATGTTAATTG+TGG | + | chr4_1:49192240-49192259 | Msa0552510:intron | 15.0% |
| !! | GTAAAATTAATATAGGATTT+CGG | + | chr4_1:49192269-49192288 | Msa0552510:intron | 15.0% |
| !! | ATAAAACATATCAGTTTAAA+TGG | - | chr4_1:49193633-49193652 | None:intergenic | 15.0% |
| !! | TTGAGTAAATAACAATAAAT+TGG | - | chr4_1:49193835-49193854 | None:intergenic | 15.0% |
| !!! | GTTATTTCAAAAGCTTAAAT+GGG | - | chr4_1:49192579-49192598 | None:intergenic | 20.0% |
| !!! | AGTTATTTCAAAAGCTTAAA+TGG | - | chr4_1:49192580-49192599 | None:intergenic | 20.0% |
| !!! | ATTCTATGATTTCATTGTTT+TGG | + | chr4_1:49192657-49192676 | Msa0552510:intron | 20.0% |
| !! | ATCAGTATATTGTTATATCA+GGG | - | chr4_1:49192900-49192919 | None:intergenic | 20.0% |
| !! | AATCAGTATATTGTTATATC+AGG | - | chr4_1:49192901-49192920 | None:intergenic | 20.0% |
| !! | CAGTAAAATAACAAATTAGA+AGG | - | chr4_1:49193203-49193222 | None:intergenic | 20.0% |
| !! | TTCAGTCATAAATCATATAT+AGG | - | chr4_1:49193420-49193439 | None:intergenic | 20.0% |
| !! | TGTTAAAAATGAAGACAAAA+TGG | + | chr4_1:49193526-49193545 | Msa0552510:CDS | 20.0% |
| !!! | TAAACTGATATGTTTTATGT+TGG | + | chr4_1:49193635-49193654 | Msa0552510:intron | 20.0% |
| !!! | TTTTATGTTGGTTTTATTTC+AGG | + | chr4_1:49193647-49193666 | Msa0552510:intron | 20.0% |
| !!! | TGTAAATAACAAACGTTTTT+GGG | - | chr4_1:49193896-49193915 | None:intergenic | 20.0% |
| !!! | TTGTAAATAACAAACGTTTT+TGG | - | chr4_1:49193897-49193916 | None:intergenic | 20.0% |
| !! | TTGAAGAAAAAATAATACTC+CGG | - | chr4_1:49193923-49193942 | None:intergenic | 20.0% |
| !!! | GTTATTTCAAAAGCTTAAAT+GGG | - | chr4_1:49192579-49192598 | None:intergenic | 20.0% |
| !!! | AGTTATTTCAAAAGCTTAAA+TGG | - | chr4_1:49192580-49192599 | None:intergenic | 20.0% |
| !!! | ATTCTATGATTTCATTGTTT+TGG | + | chr4_1:49192657-49192676 | Msa0552510:intron | 20.0% |
| !! | ATCAGTATATTGTTATATCA+GGG | - | chr4_1:49192900-49192919 | None:intergenic | 20.0% |
| !! | AATCAGTATATTGTTATATC+AGG | - | chr4_1:49192901-49192920 | None:intergenic | 20.0% |
| !! | CAGTAAAATAACAAATTAGA+AGG | - | chr4_1:49193203-49193222 | None:intergenic | 20.0% |
| !! | TTCAGTCATAAATCATATAT+AGG | - | chr4_1:49193420-49193439 | None:intergenic | 20.0% |
| !! | TGTTAAAAATGAAGACAAAA+TGG | + | chr4_1:49193526-49193545 | Msa0552510:CDS | 20.0% |
| !!! | TAAACTGATATGTTTTATGT+TGG | + | chr4_1:49193635-49193654 | Msa0552510:intron | 20.0% |
| !!! | TTTTATGTTGGTTTTATTTC+AGG | + | chr4_1:49193647-49193666 | Msa0552510:intron | 20.0% |
| !!! | TGTAAATAACAAACGTTTTT+GGG | - | chr4_1:49193896-49193915 | None:intergenic | 20.0% |
| !!! | TTGTAAATAACAAACGTTTT+TGG | - | chr4_1:49193897-49193916 | None:intergenic | 20.0% |
| !! | TTGAAGAAAAAATAATACTC+CGG | - | chr4_1:49193923-49193942 | None:intergenic | 20.0% |
| !! | TGATAAGTACTGTTAAGAAA+TGG | - | chr4_1:49191750-49191769 | None:intergenic | 25.0% |
| !!! | GTATTTGTTTTCAAATTTGC+AGG | + | chr4_1:49191943-49191962 | Msa0552510:intron | 25.0% |
| ! | AGTTGAAAACAAAATTAAGC+AGG | + | chr4_1:49192441-49192460 | Msa0552510:intron | 25.0% |
| ! | GTTGAAAACAAAATTAAGCA+GGG | + | chr4_1:49192442-49192461 | Msa0552510:intron | 25.0% |
| ! | ATATCAATCTACCATTTCAT+AGG | - | chr4_1:49192703-49192722 | None:intergenic | 25.0% |
| ! | CGTTAAACAATTATTCGTTA+TGG | + | chr4_1:49192834-49192853 | Msa0552510:intron | 25.0% |
| ! | GTTATGGTTATATTAAAGTC+TGG | + | chr4_1:49192850-49192869 | Msa0552510:intron | 25.0% |
| ! | TTTATGACTGAATTGAATTC+AGG | + | chr4_1:49193428-49193447 | Msa0552510:intron | 25.0% |
| !!! | TTTGTCTTCATTTTTAACAG+TGG | - | chr4_1:49193525-49193544 | None:intergenic | 25.0% |
| ! | AAATTTCAATGACAAGTATG+AGG | + | chr4_1:49193671-49193690 | Msa0552510:CDS | 25.0% |
| !!! | ATTGAAGTTTTTTTGTAGTC+TGG | + | chr4_1:49193855-49193874 | Msa0552510:three_prime_UTR | 25.0% |
| !!! | ATTTTTTCTTCAAGTTATCC+TGG | + | chr4_1:49193930-49193949 | Msa0552510:three_prime_UTR | 25.0% |
| ! | ATATTGTTTATGATGAATCC+AGG | - | chr4_1:49193951-49193970 | None:intergenic | 25.0% |
| ! | ATCATAAACAATATTACCTC+TGG | + | chr4_1:49193957-49193976 | Msa0552510:three_prime_UTR | 25.0% |
| !! | TGATAAGTACTGTTAAGAAA+TGG | - | chr4_1:49191750-49191769 | None:intergenic | 25.0% |
| !!! | GTATTTGTTTTCAAATTTGC+AGG | + | chr4_1:49191943-49191962 | Msa0552510:intron | 25.0% |
| ! | AGTTGAAAACAAAATTAAGC+AGG | + | chr4_1:49192441-49192460 | Msa0552510:intron | 25.0% |
| ! | GTTGAAAACAAAATTAAGCA+GGG | + | chr4_1:49192442-49192461 | Msa0552510:intron | 25.0% |
| ! | ATATCAATCTACCATTTCAT+AGG | - | chr4_1:49192703-49192722 | None:intergenic | 25.0% |
| ! | CGTTAAACAATTATTCGTTA+TGG | + | chr4_1:49192834-49192853 | Msa0552510:intron | 25.0% |
| ! | GTTATGGTTATATTAAAGTC+TGG | + | chr4_1:49192850-49192869 | Msa0552510:intron | 25.0% |
| ! | TTTATGACTGAATTGAATTC+AGG | + | chr4_1:49193428-49193447 | Msa0552510:intron | 25.0% |
| !!! | TTTGTCTTCATTTTTAACAG+TGG | - | chr4_1:49193525-49193544 | None:intergenic | 25.0% |
| ! | AAATTTCAATGACAAGTATG+AGG | + | chr4_1:49193671-49193690 | Msa0552510:CDS | 25.0% |
| !!! | ATTGAAGTTTTTTTGTAGTC+TGG | + | chr4_1:49193855-49193874 | Msa0552510:three_prime_UTR | 25.0% |
| !!! | ATTTTTTCTTCAAGTTATCC+TGG | + | chr4_1:49193930-49193949 | Msa0552510:three_prime_UTR | 25.0% |
| ! | ATATTGTTTATGATGAATCC+AGG | - | chr4_1:49193951-49193970 | None:intergenic | 25.0% |
| ! | ATCATAAACAATATTACCTC+TGG | + | chr4_1:49193957-49193976 | Msa0552510:three_prime_UTR | 25.0% |
| ! | TTCATCGTGTTTGATTTCTT+AGG | + | chr4_1:49191796-49191815 | Msa0552510:intron | 30.0% |
| GCTTATGAAAGCAACTTATA+TGG | - | chr4_1:49192397-49192416 | None:intergenic | 30.0% | |
| ! | AACAAAATTAAGCAGGGTTT+TGG | + | chr4_1:49192448-49192467 | Msa0552510:intron | 30.0% |
| CTTATGCAATAAGCTTCAAA+TGG | - | chr4_1:49192474-49192493 | None:intergenic | 30.0% | |
| ! | TTTGAAGCTTATTGCATAAG+TGG | + | chr4_1:49192474-49192493 | Msa0552510:intron | 30.0% |
| !!! | TTGTTTTGGTTTCTTTCTAC+TGG | + | chr4_1:49192671-49192690 | Msa0552510:intron | 30.0% |
| ! | ATTTTACTGCCATACACATT+AGG | + | chr4_1:49192767-49192786 | Msa0552510:intron | 30.0% |
| ATGGTTATATTAAAGTCTGG+AGG | + | chr4_1:49192853-49192872 | Msa0552510:intron | 30.0% | |
| AAGCCTATTAATGTGAAGTA+TGG | + | chr4_1:49193106-49193125 | Msa0552510:CDS | 30.0% | |
| AATCCCATACTGTATTGTTA+AGG | + | chr4_1:49193351-49193370 | Msa0552510:CDS | 30.0% | |
| ATCCCATACTGTATTGTTAA+GGG | + | chr4_1:49193352-49193371 | Msa0552510:CDS | 30.0% | |
| TAATCTCTCTACACTTAAAC+AGG | + | chr4_1:49193463-49193482 | Msa0552510:intron | 30.0% | |
| !!! | AACGTTTTTGGGTGATAATT+AGG | - | chr4_1:49193885-49193904 | None:intergenic | 30.0% |
| !! | CGTTTGTTATTTACAATAGC+CGG | + | chr4_1:49193901-49193920 | Msa0552510:three_prime_UTR | 30.0% |
| ! | TTCATCGTGTTTGATTTCTT+AGG | + | chr4_1:49191796-49191815 | Msa0552510:intron | 30.0% |
| GCTTATGAAAGCAACTTATA+TGG | - | chr4_1:49192397-49192416 | None:intergenic | 30.0% | |
| ! | AACAAAATTAAGCAGGGTTT+TGG | + | chr4_1:49192448-49192467 | Msa0552510:intron | 30.0% |
| CTTATGCAATAAGCTTCAAA+TGG | - | chr4_1:49192474-49192493 | None:intergenic | 30.0% | |
| ! | TTTGAAGCTTATTGCATAAG+TGG | + | chr4_1:49192474-49192493 | Msa0552510:intron | 30.0% |
| !!! | TTGTTTTGGTTTCTTTCTAC+TGG | + | chr4_1:49192671-49192690 | Msa0552510:intron | 30.0% |
| ! | ATTTTACTGCCATACACATT+AGG | + | chr4_1:49192767-49192786 | Msa0552510:intron | 30.0% |
| ATGGTTATATTAAAGTCTGG+AGG | + | chr4_1:49192853-49192872 | Msa0552510:intron | 30.0% | |
| AAGCCTATTAATGTGAAGTA+TGG | + | chr4_1:49193106-49193125 | Msa0552510:CDS | 30.0% | |
| AATCCCATACTGTATTGTTA+AGG | + | chr4_1:49193351-49193370 | Msa0552510:CDS | 30.0% | |
| ATCCCATACTGTATTGTTAA+GGG | + | chr4_1:49193352-49193371 | Msa0552510:CDS | 30.0% | |
| TAATCTCTCTACACTTAAAC+AGG | + | chr4_1:49193463-49193482 | Msa0552510:intron | 30.0% | |
| !!! | AACGTTTTTGGGTGATAATT+AGG | - | chr4_1:49193885-49193904 | None:intergenic | 30.0% |
| !! | CGTTTGTTATTTACAATAGC+CGG | + | chr4_1:49193901-49193920 | Msa0552510:three_prime_UTR | 30.0% |
| ATTTCTTAGGCTCCCAAAAA+AGG | + | chr4_1:49191809-49191828 | Msa0552510:intron | 35.0% | |
| !!! | GGAGCTTTAACACCTTTTTT+GGG | - | chr4_1:49191824-49191843 | None:intergenic | 35.0% |
| !!! | TGGAGCTTTAACACCTTTTT+TGG | - | chr4_1:49191825-49191844 | None:intergenic | 35.0% |
| AAATGAGATTGGAATTGACG+CGG | - | chr4_1:49191880-49191899 | None:intergenic | 35.0% | |
| TCGAAAGTCGTAAATGAGAT+TGG | - | chr4_1:49191891-49191910 | None:intergenic | 35.0% | |
| ! | GTTTTCAAATTTGCAGGAGA+AGG | + | chr4_1:49191949-49191968 | Msa0552510:intron | 35.0% |
| AAAACCCTCGACAAAAATCT+AGG | + | chr4_1:49192145-49192164 | Msa0552510:CDS | 35.0% | |
| TTAATATAGGATTTCGGCCT+TGG | + | chr4_1:49192275-49192294 | Msa0552510:intron | 35.0% | |
| ! | GTAGAGAAGCTTTTTATCCA+AGG | - | chr4_1:49192295-49192314 | None:intergenic | 35.0% |
| ! | GTTGCTTTCATAAGCTATCT+TGG | + | chr4_1:49192402-49192421 | Msa0552510:intron | 35.0% |
| ! | ACTGGTTTCTTCCTATGAAA+TGG | + | chr4_1:49192689-49192708 | Msa0552510:intron | 35.0% |
| TGGCAGTAAAATAACGTTTG+AGG | - | chr4_1:49192759-49192778 | None:intergenic | 35.0% | |
| AAGCTACAACCTAATGTGTA+TGG | - | chr4_1:49192779-49192798 | None:intergenic | 35.0% | |
| GAGGCAGTACTTTATTAGTT+TGG | + | chr4_1:49192872-49192891 | Msa0552510:intron | 35.0% | |
| AAGTATCTTGAACAAGCTTG+TGG | - | chr4_1:49192993-49193012 | None:intergenic | 35.0% | |
| !! | TCAAGATACTTCTGAAGTAC+AGG | + | chr4_1:49193002-49193021 | Msa0552510:CDS | 35.0% |
| AGGCCATACTTCACATTAAT+AGG | - | chr4_1:49193112-49193131 | None:intergenic | 35.0% | |
| GAAGGAAAAATCAGCAATCT+TGG | - | chr4_1:49193185-49193204 | None:intergenic | 35.0% | |
| AGCCAGACAACTAATTCAAT+GGG | - | chr4_1:49193307-49193326 | None:intergenic | 35.0% | |
| AAGCCAGACAACTAATTCAA+TGG | - | chr4_1:49193308-49193327 | None:intergenic | 35.0% | |
| TGCCCTTAACAATACAGTAT+GGG | - | chr4_1:49193357-49193376 | None:intergenic | 35.0% | |
| TTGCCCTTAACAATACAGTA+TGG | - | chr4_1:49193358-49193377 | None:intergenic | 35.0% | |
| ATACTGTATTGTTAAGGGCA+AGG | + | chr4_1:49193357-49193376 | Msa0552510:CDS | 35.0% | |
| ACAACAAACTTACACTTCCT+AGG | - | chr4_1:49193387-49193406 | None:intergenic | 35.0% | |
| ! | AAACAGCAGCAGTTTTCTTA+TGG | - | chr4_1:49193493-49193512 | None:intergenic | 35.0% |
| CAGAATATAACACAACTCCT+AGG | - | chr4_1:49193799-49193818 | None:intergenic | 35.0% | |
| ATTTCTTAGGCTCCCAAAAA+AGG | + | chr4_1:49191809-49191828 | Msa0552510:intron | 35.0% | |
| !!! | GGAGCTTTAACACCTTTTTT+GGG | - | chr4_1:49191824-49191843 | None:intergenic | 35.0% |
| !!! | TGGAGCTTTAACACCTTTTT+TGG | - | chr4_1:49191825-49191844 | None:intergenic | 35.0% |
| AAATGAGATTGGAATTGACG+CGG | - | chr4_1:49191880-49191899 | None:intergenic | 35.0% | |
| TCGAAAGTCGTAAATGAGAT+TGG | - | chr4_1:49191891-49191910 | None:intergenic | 35.0% | |
| ! | GTTTTCAAATTTGCAGGAGA+AGG | + | chr4_1:49191949-49191968 | Msa0552510:intron | 35.0% |
| AAAACCCTCGACAAAAATCT+AGG | + | chr4_1:49192145-49192164 | Msa0552510:CDS | 35.0% | |
| TTAATATAGGATTTCGGCCT+TGG | + | chr4_1:49192275-49192294 | Msa0552510:intron | 35.0% | |
| ! | GTAGAGAAGCTTTTTATCCA+AGG | - | chr4_1:49192295-49192314 | None:intergenic | 35.0% |
| ! | GTTGCTTTCATAAGCTATCT+TGG | + | chr4_1:49192402-49192421 | Msa0552510:intron | 35.0% |
| ! | ACTGGTTTCTTCCTATGAAA+TGG | + | chr4_1:49192689-49192708 | Msa0552510:intron | 35.0% |
| TGGCAGTAAAATAACGTTTG+AGG | - | chr4_1:49192759-49192778 | None:intergenic | 35.0% | |
| AAGCTACAACCTAATGTGTA+TGG | - | chr4_1:49192779-49192798 | None:intergenic | 35.0% | |
| GAGGCAGTACTTTATTAGTT+TGG | + | chr4_1:49192872-49192891 | Msa0552510:intron | 35.0% | |
| AAGTATCTTGAACAAGCTTG+TGG | - | chr4_1:49192993-49193012 | None:intergenic | 35.0% | |
| !! | TCAAGATACTTCTGAAGTAC+AGG | + | chr4_1:49193002-49193021 | Msa0552510:CDS | 35.0% |
| AGGCCATACTTCACATTAAT+AGG | - | chr4_1:49193112-49193131 | None:intergenic | 35.0% | |
| GAAGGAAAAATCAGCAATCT+TGG | - | chr4_1:49193185-49193204 | None:intergenic | 35.0% | |
| AGCCAGACAACTAATTCAAT+GGG | - | chr4_1:49193307-49193326 | None:intergenic | 35.0% | |
| AAGCCAGACAACTAATTCAA+TGG | - | chr4_1:49193308-49193327 | None:intergenic | 35.0% | |
| TGCCCTTAACAATACAGTAT+GGG | - | chr4_1:49193357-49193376 | None:intergenic | 35.0% | |
| TTGCCCTTAACAATACAGTA+TGG | - | chr4_1:49193358-49193377 | None:intergenic | 35.0% | |
| ATACTGTATTGTTAAGGGCA+AGG | + | chr4_1:49193357-49193376 | Msa0552510:CDS | 35.0% | |
| ACAACAAACTTACACTTCCT+AGG | - | chr4_1:49193387-49193406 | None:intergenic | 35.0% | |
| ! | AAACAGCAGCAGTTTTCTTA+TGG | - | chr4_1:49193493-49193512 | None:intergenic | 35.0% |
| CAGAATATAACACAACTCCT+AGG | - | chr4_1:49193799-49193818 | None:intergenic | 35.0% | |
| ! | CTCCAACTAGGGTTTTTCTT+CGG | + | chr4_1:49191636-49191655 | Msa0552510:CDS | 40.0% |
| !! | TTCTTCTTTGAAGCTGCAAC+TGG | - | chr4_1:49191845-49191864 | None:intergenic | 40.0% |
| ! | CGTCCAAAGCAATTTGGAAT+TGG | + | chr4_1:49191995-49192014 | Msa0552510:CDS | 40.0% |
| CCTCCAATTCCAAATTGCTT+TGG | - | chr4_1:49192001-49192020 | None:intergenic | 40.0% | |
| ! | CCAAAGCAATTTGGAATTGG+AGG | + | chr4_1:49191998-49192017 | Msa0552510:CDS | 40.0% |
| AATCTGGTCAAATCCCTCTT+CGG | - | chr4_1:49192034-49192053 | None:intergenic | 40.0% | |
| ATTTGACCAGATTCGTGAAG+TGG | + | chr4_1:49192041-49192060 | Msa0552510:CDS | 40.0% | |
| !!! | AGAAGAGGATTTTGAAGCAG+AGG | + | chr4_1:49192089-49192108 | Msa0552510:CDS | 40.0% |
| !!! | GATTTTGAAGCAGAGGTTGA+AGG | + | chr4_1:49192096-49192115 | Msa0552510:CDS | 40.0% |
| ! | TTAGTGAACTGGTTCAAAGC+TGG | - | chr4_1:49192127-49192146 | None:intergenic | 40.0% |
| ! | CTGACCTAGATTTTTGTCGA+GGG | - | chr4_1:49192152-49192171 | None:intergenic | 40.0% |
| ! | TCTGACCTAGATTTTTGTCG+AGG | - | chr4_1:49192153-49192172 | None:intergenic | 40.0% |
| !! | AGAAGGAGAGGCTTTTGAAA+AGG | + | chr4_1:49193044-49193063 | Msa0552510:CDS | 40.0% |
| !! | GAAGGAGAGGCTTTTGAAAA+GGG | + | chr4_1:49193045-49193064 | Msa0552510:CDS | 40.0% |
| TGAGGTAGGTAACATGATTG+AGG | - | chr4_1:49193132-49193151 | None:intergenic | 40.0% | |
| ACCCCATTGAATTAGTTGTC+TGG | + | chr4_1:49193302-49193321 | Msa0552510:CDS | 40.0% | |
| GCCAGACAACTAATTCAATG+GGG | - | chr4_1:49193306-49193325 | None:intergenic | 40.0% | |
| ACAAACTTACACTTCCTAGG+CGG | - | chr4_1:49193384-49193403 | None:intergenic | 40.0% | |
| AAGACAAAATGGAGTTCAGC+AGG | + | chr4_1:49193537-49193556 | Msa0552510:CDS | 40.0% | |
| AGACAAAATGGAGTTCAGCA+GGG | + | chr4_1:49193538-49193557 | Msa0552510:CDS | 40.0% | |
| ! | ATGACAAGTATGAGGAGTAC+AGG | + | chr4_1:49193679-49193698 | Msa0552510:CDS | 40.0% |
| AATAAGCCTTTCCTTTGCCT+TGG | - | chr4_1:49193751-49193770 | None:intergenic | 40.0% | |
| AAAGGAAAGGCTTATTGCCA+AGG | + | chr4_1:49193755-49193774 | Msa0552510:CDS | 40.0% | |
| ! | CTCCAACTAGGGTTTTTCTT+CGG | + | chr4_1:49191636-49191655 | Msa0552510:CDS | 40.0% |
| !! | TTCTTCTTTGAAGCTGCAAC+TGG | - | chr4_1:49191845-49191864 | None:intergenic | 40.0% |
| ! | CGTCCAAAGCAATTTGGAAT+TGG | + | chr4_1:49191995-49192014 | Msa0552510:CDS | 40.0% |
| CCTCCAATTCCAAATTGCTT+TGG | - | chr4_1:49192001-49192020 | None:intergenic | 40.0% | |
| ! | CCAAAGCAATTTGGAATTGG+AGG | + | chr4_1:49191998-49192017 | Msa0552510:CDS | 40.0% |
| AATCTGGTCAAATCCCTCTT+CGG | - | chr4_1:49192034-49192053 | None:intergenic | 40.0% | |
| ATTTGACCAGATTCGTGAAG+TGG | + | chr4_1:49192041-49192060 | Msa0552510:CDS | 40.0% | |
| !!! | AGAAGAGGATTTTGAAGCAG+AGG | + | chr4_1:49192089-49192108 | Msa0552510:CDS | 40.0% |
| !!! | GATTTTGAAGCAGAGGTTGA+AGG | + | chr4_1:49192096-49192115 | Msa0552510:CDS | 40.0% |
| ! | TTAGTGAACTGGTTCAAAGC+TGG | - | chr4_1:49192127-49192146 | None:intergenic | 40.0% |
| ! | CTGACCTAGATTTTTGTCGA+GGG | - | chr4_1:49192152-49192171 | None:intergenic | 40.0% |
| ! | TCTGACCTAGATTTTTGTCG+AGG | - | chr4_1:49192153-49192172 | None:intergenic | 40.0% |
| !! | AGAAGGAGAGGCTTTTGAAA+AGG | + | chr4_1:49193044-49193063 | Msa0552510:CDS | 40.0% |
| !! | GAAGGAGAGGCTTTTGAAAA+GGG | + | chr4_1:49193045-49193064 | Msa0552510:CDS | 40.0% |
| TGAGGTAGGTAACATGATTG+AGG | - | chr4_1:49193132-49193151 | None:intergenic | 40.0% | |
| ACCCCATTGAATTAGTTGTC+TGG | + | chr4_1:49193302-49193321 | Msa0552510:CDS | 40.0% | |
| GCCAGACAACTAATTCAATG+GGG | - | chr4_1:49193306-49193325 | None:intergenic | 40.0% | |
| ACAAACTTACACTTCCTAGG+CGG | - | chr4_1:49193384-49193403 | None:intergenic | 40.0% | |
| AAGACAAAATGGAGTTCAGC+AGG | + | chr4_1:49193537-49193556 | Msa0552510:CDS | 40.0% | |
| AGACAAAATGGAGTTCAGCA+GGG | + | chr4_1:49193538-49193557 | Msa0552510:CDS | 40.0% | |
| ! | ATGACAAGTATGAGGAGTAC+AGG | + | chr4_1:49193679-49193698 | Msa0552510:CDS | 40.0% |
| AATAAGCCTTTCCTTTGCCT+TGG | - | chr4_1:49193751-49193770 | None:intergenic | 40.0% | |
| AAAGGAAAGGCTTATTGCCA+AGG | + | chr4_1:49193755-49193774 | Msa0552510:CDS | 40.0% | |
| CTCCGAAGAAAAACCCTAGT+TGG | - | chr4_1:49191641-49191660 | None:intergenic | 45.0% | |
| GAATTGACGCGGTTACTTAC+AGG | - | chr4_1:49191869-49191888 | None:intergenic | 45.0% | |
| TTTGGACGCTTCTCAAACAG+CGG | - | chr4_1:49191983-49192002 | None:intergenic | 45.0% | |
| !! | GAGAAGCGTCCAAAGCAATT+TGG | + | chr4_1:49191989-49192008 | Msa0552510:CDS | 45.0% |
| !! | TGTCGAGGGTTTTAGTGAAC+TGG | - | chr4_1:49192138-49192157 | None:intergenic | 45.0% |
| TGCATGTGCTGCATAAATGC+TGG | + | chr4_1:49192632-49192651 | Msa0552510:intron | 45.0% | |
| GATTTCCATCTTCCTGCACA+AGG | - | chr4_1:49193335-49193354 | None:intergenic | 45.0% | |
| CAAACTTACACTTCCTAGGC+GGG | - | chr4_1:49193383-49193402 | None:intergenic | 45.0% | |
| ! | ATGAGGAGTACAGGAAGAAG+TGG | + | chr4_1:49193688-49193707 | Msa0552510:CDS | 45.0% |
| ! | TGAGGAGTACAGGAAGAAGT+GGG | + | chr4_1:49193689-49193708 | Msa0552510:CDS | 45.0% |
| ! | TACCTCTGGCGACAGAATTT+TGG | + | chr4_1:49193971-49193990 | Msa0552510:three_prime_UTR | 45.0% |
| TACCAAAATTCTGTCGCCAG+AGG | - | chr4_1:49193976-49193995 | None:intergenic | 45.0% | |
| CTCCGAAGAAAAACCCTAGT+TGG | - | chr4_1:49191641-49191660 | None:intergenic | 45.0% | |
| GAATTGACGCGGTTACTTAC+AGG | - | chr4_1:49191869-49191888 | None:intergenic | 45.0% | |
| TTTGGACGCTTCTCAAACAG+CGG | - | chr4_1:49191983-49192002 | None:intergenic | 45.0% | |
| !! | GAGAAGCGTCCAAAGCAATT+TGG | + | chr4_1:49191989-49192008 | Msa0552510:CDS | 45.0% |
| !! | TGTCGAGGGTTTTAGTGAAC+TGG | - | chr4_1:49192138-49192157 | None:intergenic | 45.0% |
| TGCATGTGCTGCATAAATGC+TGG | + | chr4_1:49192632-49192651 | Msa0552510:intron | 45.0% | |
| GATTTCCATCTTCCTGCACA+AGG | - | chr4_1:49193335-49193354 | None:intergenic | 45.0% | |
| CAAACTTACACTTCCTAGGC+GGG | - | chr4_1:49193383-49193402 | None:intergenic | 45.0% | |
| ! | ATGAGGAGTACAGGAAGAAG+TGG | + | chr4_1:49193688-49193707 | Msa0552510:CDS | 45.0% |
| ! | TGAGGAGTACAGGAAGAAGT+GGG | + | chr4_1:49193689-49193708 | Msa0552510:CDS | 45.0% |
| ! | TACCTCTGGCGACAGAATTT+TGG | + | chr4_1:49193971-49193990 | Msa0552510:three_prime_UTR | 45.0% |
| TACCAAAATTCTGTCGCCAG+AGG | - | chr4_1:49193976-49193995 | None:intergenic | 45.0% | |
| GCTAATGCTCTGTGTCTGTG+CGG | - | chr4_1:49191675-49191694 | None:intergenic | 50.0% | |
| AGCATTAGCACCAGCAGCAA+TGG | + | chr4_1:49191686-49191705 | Msa0552510:CDS | 50.0% | |
| TTGGACGCTTCTCAAACAGC+GGG | - | chr4_1:49191982-49192001 | None:intergenic | 50.0% | |
| CTCTGCACCTGAACGTTCTT+CGG | - | chr4_1:49192067-49192086 | None:intergenic | 50.0% | |
| TTCAGGTGCAGAGGAAGAAG+AGG | + | chr4_1:49192074-49192093 | Msa0552510:CDS | 50.0% | |
| ! | GTGAACTGGTTCAAAGCTGG+TGG | - | chr4_1:49192124-49192143 | None:intergenic | 50.0% |
| !! | ACTTCTGAAGTACAGGCCTG+AGG | + | chr4_1:49193009-49193028 | Msa0552510:CDS | 50.0% |
| ! | TTCTTCTCAGCCTTGTCCTC+AGG | - | chr4_1:49193028-49193047 | None:intergenic | 50.0% |
| TGAGGACAAGGCTGAGAAGA+AGG | + | chr4_1:49193027-49193046 | Msa0552510:CDS | 50.0% | |
| ACAAGGCTGAGAAGAAGGAG+AGG | + | chr4_1:49193032-49193051 | Msa0552510:CDS | 50.0% | |
| !! | GAGGCTTTTGAAAAGGGCTC+AGG | + | chr4_1:49193051-49193070 | Msa0552510:CDS | 50.0% |
| !! | GCTTTTGAAAAGGGCTCAGG+CGG | + | chr4_1:49193054-49193073 | Msa0552510:CDS | 50.0% |
| TGTTACCTACCTCATCGAGC+AGG | + | chr4_1:49193138-49193157 | Msa0552510:CDS | 50.0% | |
| GAAAGACAACCTGCTCGATG+AGG | - | chr4_1:49193150-49193169 | None:intergenic | 50.0% | |
| GTGAGCAATCACGACAAGCT+GGG | - | chr4_1:49193275-49193294 | None:intergenic | 50.0% | |
| ATGCCACCTTAATCGCCTCT+AGG | - | chr4_1:49193565-49193584 | None:intergenic | 50.0% | |
| ! | GAGGAGTACAGGAAGAAGTG+GGG | + | chr4_1:49193690-49193709 | Msa0552510:CDS | 50.0% |
| !! | AAGTGGGGTGGTGGAATCAT+GGG | + | chr4_1:49193705-49193724 | Msa0552510:CDS | 50.0% |
| !! | CTTGGTCTTGGCTTGGGATT+TGG | - | chr4_1:49193733-49193752 | None:intergenic | 50.0% |
| CAAATCCCAAGCCAAGACCA+AGG | + | chr4_1:49193731-49193750 | Msa0552510:CDS | 50.0% | |
| !! | CTTTGCCTTGGTCTTGGCTT+GGG | - | chr4_1:49193739-49193758 | None:intergenic | 50.0% |
| CCTTTCCTTTGCCTTGGTCT+TGG | - | chr4_1:49193745-49193764 | None:intergenic | 50.0% | |
| CCAAGACCAAGGCAAAGGAA+AGG | + | chr4_1:49193742-49193761 | Msa0552510:CDS | 50.0% | |
| GGAAAGGCTTATTGCCAAGG+AGG | + | chr4_1:49193758-49193777 | Msa0552510:CDS | 50.0% | |
| GCTAATGCTCTGTGTCTGTG+CGG | - | chr4_1:49191675-49191694 | None:intergenic | 50.0% | |
| AGCATTAGCACCAGCAGCAA+TGG | + | chr4_1:49191686-49191705 | Msa0552510:CDS | 50.0% | |
| TTGGACGCTTCTCAAACAGC+GGG | - | chr4_1:49191982-49192001 | None:intergenic | 50.0% | |
| CTCTGCACCTGAACGTTCTT+CGG | - | chr4_1:49192067-49192086 | None:intergenic | 50.0% | |
| TTCAGGTGCAGAGGAAGAAG+AGG | + | chr4_1:49192074-49192093 | Msa0552510:CDS | 50.0% | |
| ! | GTGAACTGGTTCAAAGCTGG+TGG | - | chr4_1:49192124-49192143 | None:intergenic | 50.0% |
| !! | ACTTCTGAAGTACAGGCCTG+AGG | + | chr4_1:49193009-49193028 | Msa0552510:CDS | 50.0% |
| ! | TTCTTCTCAGCCTTGTCCTC+AGG | - | chr4_1:49193028-49193047 | None:intergenic | 50.0% |
| TGAGGACAAGGCTGAGAAGA+AGG | + | chr4_1:49193027-49193046 | Msa0552510:CDS | 50.0% | |
| ACAAGGCTGAGAAGAAGGAG+AGG | + | chr4_1:49193032-49193051 | Msa0552510:CDS | 50.0% | |
| !! | GAGGCTTTTGAAAAGGGCTC+AGG | + | chr4_1:49193051-49193070 | Msa0552510:CDS | 50.0% |
| !! | GCTTTTGAAAAGGGCTCAGG+CGG | + | chr4_1:49193054-49193073 | Msa0552510:CDS | 50.0% |
| TGTTACCTACCTCATCGAGC+AGG | + | chr4_1:49193138-49193157 | Msa0552510:CDS | 50.0% | |
| GAAAGACAACCTGCTCGATG+AGG | - | chr4_1:49193150-49193169 | None:intergenic | 50.0% | |
| GTGAGCAATCACGACAAGCT+GGG | - | chr4_1:49193275-49193294 | None:intergenic | 50.0% | |
| ATGCCACCTTAATCGCCTCT+AGG | - | chr4_1:49193565-49193584 | None:intergenic | 50.0% | |
| ! | GAGGAGTACAGGAAGAAGTG+GGG | + | chr4_1:49193690-49193709 | Msa0552510:CDS | 50.0% |
| !! | AAGTGGGGTGGTGGAATCAT+GGG | + | chr4_1:49193705-49193724 | Msa0552510:CDS | 50.0% |
| !! | CTTGGTCTTGGCTTGGGATT+TGG | - | chr4_1:49193733-49193752 | None:intergenic | 50.0% |
| CAAATCCCAAGCCAAGACCA+AGG | + | chr4_1:49193731-49193750 | Msa0552510:CDS | 50.0% | |
| !! | CTTTGCCTTGGTCTTGGCTT+GGG | - | chr4_1:49193739-49193758 | None:intergenic | 50.0% |
| CCTTTCCTTTGCCTTGGTCT+TGG | - | chr4_1:49193745-49193764 | None:intergenic | 50.0% | |
| CCAAGACCAAGGCAAAGGAA+AGG | + | chr4_1:49193742-49193761 | Msa0552510:CDS | 50.0% | |
| GGAAAGGCTTATTGCCAAGG+AGG | + | chr4_1:49193758-49193777 | Msa0552510:CDS | 50.0% | |
| TAGCACCAGCAGCAATGGTG+CGG | + | chr4_1:49191691-49191710 | Msa0552510:intron | 55.0% | |
| AGTTTCCGCACCATTGCTGC+TGG | - | chr4_1:49191699-49191718 | None:intergenic | 55.0% | |
| ACGCTTCTCAAACAGCGGGT+TGG | - | chr4_1:49191978-49191997 | None:intergenic | 55.0% | |
| AGGTGCATTGCCACCGAAGA+GGG | + | chr4_1:49192018-49192037 | Msa0552510:CDS | 55.0% | |
| CTGGTCAAATCCCTCTTCGG+TGG | - | chr4_1:49192031-49192050 | None:intergenic | 55.0% | |
| CTTCGGCCACTTCACGAATC+TGG | - | chr4_1:49192050-49192069 | None:intergenic | 55.0% | |
| GAAGTGGCCGAAGAACGTTC+AGG | + | chr4_1:49192057-49192076 | Msa0552510:CDS | 55.0% | |
| CGAAGAACGTTCAGGTGCAG+AGG | + | chr4_1:49192065-49192084 | Msa0552510:CDS | 55.0% | |
| GAACAAGCTTGTGGCTGCAG+AGG | - | chr4_1:49192984-49193003 | None:intergenic | 55.0% | |
| GAAGTACAGGCCTGAGGACA+AGG | + | chr4_1:49193015-49193034 | Msa0552510:CDS | 55.0% | |
| TTTGAAAAGGGCTCAGGCGG+AGG | + | chr4_1:49193057-49193076 | Msa0552510:CDS | 55.0% | |
| GACAACCTGCTCGATGAGGT+AGG | - | chr4_1:49193146-49193165 | None:intergenic | 55.0% | |
| CGTGAGCAATCACGACAAGC+TGG | - | chr4_1:49193276-49193295 | None:intergenic | 55.0% | |
| ! | TCCAGCCTTGTGCAGGAAGA+TGG | + | chr4_1:49193327-49193346 | Msa0552510:CDS | 55.0% |
| TCCATCTTCCTGCACAAGGC+TGG | - | chr4_1:49193331-49193350 | None:intergenic | 55.0% | |
| CAGGGTCCTAGAGGCGATTA+AGG | + | chr4_1:49193556-49193575 | Msa0552510:CDS | 55.0% | |
| GGTCCTAGAGGCGATTAAGG+TGG | + | chr4_1:49193559-49193578 | Msa0552510:intron | 55.0% | |
| GAGTACAGGAAGAAGTGGGG+TGG | + | chr4_1:49193693-49193712 | Msa0552510:CDS | 55.0% | |
| TACAGGAAGAAGTGGGGTGG+TGG | + | chr4_1:49193696-49193715 | Msa0552510:CDS | 55.0% | |
| !! | GAAGTGGGGTGGTGGAATCA+TGG | + | chr4_1:49193704-49193723 | Msa0552510:CDS | 55.0% |
| !! | CCTTTGCCTTGGTCTTGGCT+TGG | - | chr4_1:49193740-49193759 | None:intergenic | 55.0% |
| CCAAGCCAAGACCAAGGCAA+AGG | + | chr4_1:49193737-49193756 | Msa0552510:CDS | 55.0% | |
| TAGCACCAGCAGCAATGGTG+CGG | + | chr4_1:49191691-49191710 | Msa0552510:intron | 55.0% | |
| AGTTTCCGCACCATTGCTGC+TGG | - | chr4_1:49191699-49191718 | None:intergenic | 55.0% | |
| ACGCTTCTCAAACAGCGGGT+TGG | - | chr4_1:49191978-49191997 | None:intergenic | 55.0% | |
| AGGTGCATTGCCACCGAAGA+GGG | + | chr4_1:49192018-49192037 | Msa0552510:CDS | 55.0% | |
| CTGGTCAAATCCCTCTTCGG+TGG | - | chr4_1:49192031-49192050 | None:intergenic | 55.0% | |
| CTTCGGCCACTTCACGAATC+TGG | - | chr4_1:49192050-49192069 | None:intergenic | 55.0% | |
| GAAGTGGCCGAAGAACGTTC+AGG | + | chr4_1:49192057-49192076 | Msa0552510:CDS | 55.0% | |
| CGAAGAACGTTCAGGTGCAG+AGG | + | chr4_1:49192065-49192084 | Msa0552510:CDS | 55.0% | |
| GAACAAGCTTGTGGCTGCAG+AGG | - | chr4_1:49192984-49193003 | None:intergenic | 55.0% | |
| GAAGTACAGGCCTGAGGACA+AGG | + | chr4_1:49193015-49193034 | Msa0552510:CDS | 55.0% | |
| TTTGAAAAGGGCTCAGGCGG+AGG | + | chr4_1:49193057-49193076 | Msa0552510:CDS | 55.0% | |
| GACAACCTGCTCGATGAGGT+AGG | - | chr4_1:49193146-49193165 | None:intergenic | 55.0% | |
| CGTGAGCAATCACGACAAGC+TGG | - | chr4_1:49193276-49193295 | None:intergenic | 55.0% | |
| ! | TCCAGCCTTGTGCAGGAAGA+TGG | + | chr4_1:49193327-49193346 | Msa0552510:CDS | 55.0% |
| TCCATCTTCCTGCACAAGGC+TGG | - | chr4_1:49193331-49193350 | None:intergenic | 55.0% | |
| CAGGGTCCTAGAGGCGATTA+AGG | + | chr4_1:49193556-49193575 | Msa0552510:CDS | 55.0% | |
| GGTCCTAGAGGCGATTAAGG+TGG | + | chr4_1:49193559-49193578 | Msa0552510:intron | 55.0% | |
| GAGTACAGGAAGAAGTGGGG+TGG | + | chr4_1:49193693-49193712 | Msa0552510:CDS | 55.0% | |
| TACAGGAAGAAGTGGGGTGG+TGG | + | chr4_1:49193696-49193715 | Msa0552510:CDS | 55.0% | |
| !! | GAAGTGGGGTGGTGGAATCA+TGG | + | chr4_1:49193704-49193723 | Msa0552510:CDS | 55.0% |
| !! | CCTTTGCCTTGGTCTTGGCT+TGG | - | chr4_1:49193740-49193759 | None:intergenic | 55.0% |
| CCAAGCCAAGACCAAGGCAA+AGG | + | chr4_1:49193737-49193756 | Msa0552510:CDS | 55.0% | |
| GAGGTGCATTGCCACCGAAG+AGG | + | chr4_1:49192017-49192036 | Msa0552510:CDS | 60.0% | |
| ! | TCTGGCTTCCAGCCTTGTGC+AGG | + | chr4_1:49193320-49193339 | Msa0552510:CDS | 60.0% |
| GGAGTTCAGCAGGGTCCTAG+AGG | + | chr4_1:49193547-49193566 | Msa0552510:CDS | 60.0% | |
| CATTCTCTGCGCAGCCTCCT+TGG | - | chr4_1:49193775-49193794 | None:intergenic | 60.0% | |
| GGCTGCGCAGAGAATGACCT+AGG | + | chr4_1:49193779-49193798 | Msa0552510:CDS | 60.0% | |
| GAGGTGCATTGCCACCGAAG+AGG | + | chr4_1:49192017-49192036 | Msa0552510:CDS | 60.0% | |
| ! | TCTGGCTTCCAGCCTTGTGC+AGG | + | chr4_1:49193320-49193339 | Msa0552510:CDS | 60.0% |
| GGAGTTCAGCAGGGTCCTAG+AGG | + | chr4_1:49193547-49193566 | Msa0552510:CDS | 60.0% | |
| CATTCTCTGCGCAGCCTCCT+TGG | - | chr4_1:49193775-49193794 | None:intergenic | 60.0% | |
| GGCTGCGCAGAGAATGACCT+AGG | + | chr4_1:49193779-49193798 | Msa0552510:CDS | 60.0% | |
| GTTAAGGGCAAGGCCCGCCT+AGG | + | chr4_1:49193367-49193386 | Msa0552510:CDS | 65.0% | |
| GTTAAGGGCAAGGCCCGCCT+AGG | + | chr4_1:49193367-49193386 | Msa0552510:CDS | 65.0% | |
| AAGGGCTCAGGCGGAGGCTG+AGG | + | chr4_1:49193063-49193082 | Msa0552510:CDS | 70.0% | |
| AGGGCTCAGGCGGAGGCTGA+GGG | + | chr4_1:49193064-49193083 | Msa0552510:CDS | 70.0% | |
| AAGGGCTCAGGCGGAGGCTG+AGG | + | chr4_1:49193063-49193082 | Msa0552510:CDS | 70.0% | |
| AGGGCTCAGGCGGAGGCTGA+GGG | + | chr4_1:49193064-49193083 | Msa0552510:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 49191630 | 49194040 | 49191630 | ID=Msa0552510;Name=Msa0552510 |
| chr4_1 | mRNA | 49191630 | 49194040 | 49191630 | ID=Msa0552510-mRNA-1;Parent=Msa0552510;Name=Msa0552510-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.85|1|1|1|7|240|284 |
| chr4_1 | exon | 49191630 | 49191707 | 49191630 | ID=Msa0552510-mRNA-1:exon:13685;Parent=Msa0552510-mRNA-1 |
| chr4_1 | exon | 49191818 | 49191868 | 49191818 | ID=Msa0552510-mRNA-1:exon:13686;Parent=Msa0552510-mRNA-1 |
| chr4_1 | exon | 49191965 | 49192166 | 49191965 | ID=Msa0552510-mRNA-1:exon:13687;Parent=Msa0552510-mRNA-1 |
| chr4_1 | exon | 49192990 | 49193159 | 49192990 | ID=Msa0552510-mRNA-1:exon:13688;Parent=Msa0552510-mRNA-1 |
| chr4_1 | exon | 49193265 | 49193393 | 49193265 | ID=Msa0552510-mRNA-1:exon:13689;Parent=Msa0552510-mRNA-1 |
| chr4_1 | exon | 49193485 | 49193577 | 49193485 | ID=Msa0552510-mRNA-1:exon:13690;Parent=Msa0552510-mRNA-1 |
| chr4_1 | exon | 49193669 | 49194040 | 49193669 | ID=Msa0552510-mRNA-1:exon:13691;Parent=Msa0552510-mRNA-1 |
| chr4_1 | CDS | 49191630 | 49191707 | 49191630 | ID=Msa0552510-mRNA-1:cds;Parent=Msa0552510-mRNA-1 |
| chr4_1 | CDS | 49191818 | 49191868 | 49191818 | ID=Msa0552510-mRNA-1:cds;Parent=Msa0552510-mRNA-1 |
| chr4_1 | CDS | 49191965 | 49192166 | 49191965 | ID=Msa0552510-mRNA-1:cds;Parent=Msa0552510-mRNA-1 |
| chr4_1 | CDS | 49192990 | 49193159 | 49192990 | ID=Msa0552510-mRNA-1:cds;Parent=Msa0552510-mRNA-1 |
| chr4_1 | CDS | 49193265 | 49193393 | 49193265 | ID=Msa0552510-mRNA-1:cds;Parent=Msa0552510-mRNA-1 |
| chr4_1 | CDS | 49193485 | 49193577 | 49193485 | ID=Msa0552510-mRNA-1:cds;Parent=Msa0552510-mRNA-1 |
| chr4_1 | CDS | 49193669 | 49193800 | 49193669 | ID=Msa0552510-mRNA-1:cds;Parent=Msa0552510-mRNA-1 |
| chr4_1 | three_prime_UTR | 49193801 | 49194040 | 49193801 | ID=Msa0552510-mRNA-1:three_prime_utr;Parent=Msa0552510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
