AlfalfaGEDB | Msa1351910

M. sativa cultivar zhongmu-4 / Msa1351910

KEGG: K02873
GO: -
PFAM: PF01294.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351910	XP_003626150.1	99.034	207	2	0	1	207	1	207	2.28e-147	418

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351910	sp\|P41129\|RL132_BRANA	85.922	206	29	0	2	207	1	206	3.23e-131	370

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351910	G7KWF6	99.034	207	2	0	1	207	1	207	1.09e-147	418

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027590	Msa1351910	0.809459	1.872372e-50	-8.615850e-47
Msa0040220	Msa1351910	0.803945	2.735412e-49	-8.615850e-47
Msa0071760	Msa1351910	0.829192	5.904879e-55	-8.615850e-47
Msa0087910	Msa1351910	0.836392	9.616045e-57	-8.615850e-47
Msa0114600	Msa1351910	0.845340	4.317122e-59	-8.615850e-47
Msa0116600	Msa1351910	0.820959	5.205337e-53	-8.615850e-47
Msa0116690	Msa1351910	0.832264	1.043947e-55	-8.615850e-47
Msa0123290	Msa1351910	0.821903	3.152650e-53	-8.615850e-47
Msa0128330	Msa1351910	0.827860	1.238885e-54	-8.615850e-47
Msa0132460	Msa1351910	0.885486	7.798665e-72	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351910	MtrunA17_Chr7g0271401	99.034	207	2	1	207	1	207	2.09e-151	418
Msa1351910	MtrunA17_Chr5g0409231	98.551	207	3	1	207	1	207	1.03e-150	416
Msa1351910	MtrunA17_Chr1g0155011	97.585	207	5	1	207	1	207	2.47e-149	413
Msa1351910	MtrunA17_Chr8g0369561	86.538	52	7	133	184	6	57	5.28e-27	97.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1351910	AT3G49010.3	87.435	191	24	0	2	192	1	191	2.48e-126	355
Msa1351910	AT3G49010.6	87.435	191	24	0	2	192	1	191	2.48e-126	355
Msa1351910	AT3G49010.1	87.435	191	24	0	2	192	1	191	2.48e-126	355
Msa1351910	AT3G49010.2	87.435	191	24	0	2	192	1	191	2.48e-126	355
Msa1351910	AT3G49010.7	87.435	191	24	0	2	192	1	191	2.48e-126	355
Msa1351910	AT3G49010.4	86.387	191	24	1	2	192	1	189	4.17e-123	347
Msa1351910	AT5G23900.1	85.484	186	27	0	2	187	1	186	1.72e-119	338
Msa1351910	AT3G48960.1	77.083	192	44	0	2	193	1	192	4.73e-109	311
Msa1351910	AT3G49010.5	61.257	191	21	1	2	192	1	138	3.91e-78	231

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Find 71 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAAATGAAGGCATTTA+AGG	0.167170	tig0012395:-3737	Msa1351910:CDS
AAATTGCTTAGTTTGAGACA+TGG	0.594953	tig0012395:-3536	Msa1351910:three_prime_UTR
AAGACGTGCACGCAAGGTCA+AGG	0.565249	tig0012395:-3999	Msa1351910:intron
AAGAGTATAGTGGCAGAAAA+TGG	0.365376	tig0012395:+6078	None:intergenic
AGAAATACAACATGAAACTA+AGG	0.419076	tig0012395:-5280	Msa1351910:CDS
AGACAAGAAGTGAAAACTTA+AGG	0.420622	tig0012395:-3632	Msa1351910:exon
AGGAAGACGAGAAGACGCTT+AGG	0.564086	tig0012395:-5475	Msa1351910:intron
AGGCCTTGGGAAAATCTTCA+CGG	0.587332	tig0012395:+5343	None:intergenic
AGTGGCAGAAAATGGAGACT+AGG	0.555231	tig0012395:+6086	None:intergenic
AGTGGTCCAGCTGTAGGCCT+TGG	0.374314	tig0012395:+5329	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTCTTTCTCATGAACAA+AGG	+	tig0012395:3603-3622	None:intergenic	30.0%
TTTGAAGGTAAGGTGAAAAA+TGG	-	tig0012395:3841-3860	Msa1351910:CDS	30.0%
GAGTTCATGTAATTTCACAT+AGG	+	tig0012395:4499-4518	None:intergenic	30.0%
ATCTAATCTTGTCAATGACA+TGG	-	tig0012395:4553-4572	Msa1351910:intron	30.0%
CAATATCACTATATAGCAAC+TGG	-	tig0012395:4585-4604	Msa1351910:intron	30.0%
TTGCCTATAGATTCAATTGA+TGG	-	tig0012395:4615-4634	Msa1351910:intron	30.0%
CAACCATCAATTGAATCTAT+AGG	+	tig0012395:4621-4640	None:intergenic	30.0%
TAAAAATACTCCATATGGAC+AGG	+	tig0012395:4759-4778	None:intergenic	30.0%
GTGTATAAGCAAAGAAATCA+TGG	+	tig0012395:5023-5042	None:intergenic	30.0%
TCACAACTGAAGAGAATATT+CGG	+	tig0012395:5092-5111	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0012395	gene	3339	6105	3339	ID=Msa1351910;Name=Msa1351910
tig0012395	mRNA	3339	6105	3339	ID=Msa1351910-mRNA-1;Parent=Msa1351910;Name=Msa1351910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=70\|1\|1\|1\|0.6\|0.33\|6\|281\|207
tig0012395	exon	3339	3383	3339	ID=Msa1351910-mRNA-1:exon:7941;Parent=Msa1351910-mRNA-1
tig0012395	exon	3406	3863	3406	ID=Msa1351910-mRNA-1:exon:7940;Parent=Msa1351910-mRNA-1
tig0012395	exon	4000	4158	4000	ID=Msa1351910-mRNA-1:exon:7939;Parent=Msa1351910-mRNA-1
tig0012395	exon	5247	5380	5247	ID=Msa1351910-mRNA-1:exon:7938;Parent=Msa1351910-mRNA-1
tig0012395	exon	5476	5596	5476	ID=Msa1351910-mRNA-1:exon:7937;Parent=Msa1351910-mRNA-1
tig0012395	exon	6048	6105	6048	ID=Msa1351910-mRNA-1:exon:7936;Parent=Msa1351910-mRNA-1
tig0012395	five_prime_UTR	6048	6105	6048	ID=Msa1351910-mRNA-1:five_prime_utr;Parent=Msa1351910-mRNA-1
tig0012395	five_prime_UTR	5585	5596	5585	ID=Msa1351910-mRNA-1:five_prime_utr;Parent=Msa1351910-mRNA-1
tig0012395	CDS	5476	5584	5476	ID=Msa1351910-mRNA-1:cds;Parent=Msa1351910-mRNA-1
tig0012395	CDS	5247	5380	5247	ID=Msa1351910-mRNA-1:cds;Parent=Msa1351910-mRNA-1
tig0012395	CDS	4000	4158	4000	ID=Msa1351910-mRNA-1:cds;Parent=Msa1351910-mRNA-1
tig0012395	CDS	3642	3863	3642	ID=Msa1351910-mRNA-1:cds;Parent=Msa1351910-mRNA-1
tig0012395	three_prime_UTR	3406	3641	3406	ID=Msa1351910-mRNA-1:three_prime_utr;Parent=Msa1351910-mRNA-1
tig0012395	three_prime_UTR	3339	3383	3339	ID=Msa1351910-mRNA-1:three_prime_utr;Parent=Msa1351910-mRNA-1

Gene Sequence

>Msa1351910

ATGGTGAAGCATAACAATGTTATCCCTAATGAACACTTCCGCAAGCATTGGCAAAACTATGTCAAGACATGGTTTAACCAACCTGCAAGGAAGACGAGAAGACGCTTAGCTCGTCAGAAGAAGGCCGTGAAGATTTTCCCAAGGCCTACAGCTGGACCACTCAGGCCTATTGTTCATGGACAGACTCAGAAATACAACATGAAACTAAGGGCCGGTAAAGGCTTCTCCCTTGAGGAGTTGAAGGCTGCTGGTATTCCCAAAAAGCTTGCTCCAACTATTGGTATTTCTGTCGATCATCGCCGCAAGAACCGATCCTTGGAAGGTCTGCAAGCCAACGTGCAGAGGCTGAAGACATACAAGGCCAAGTTGGTCGTCTTCCCAAGACGTGCACGCAAGGTCAAGGCTGGTGATTCCACTCCTGAGGAACTAGCAAATGCTACACAGGTTCAAGGTTCATACTTACCAATTGTGAGGGAGAAGCCATCTGTAGAGCTTGTTAAGATTACAAATGAAATGAAGGCATTTAAGGCTTATTACAAGCTTCGTCTTGAGCGAACAAACAAACGCCATTTGGGTGCCAGACTGAAGAGGGCTGCCGAGGCAGAGAAGGAAGACAAGAAGTGA

Protein sequence

>Msa1351910

MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTQKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRARKVKAGDSTPEELANATQVQGSYLPIVREKPSVELVKITNEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDKK*