Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557030 | XP_024638208.1 | 98.354 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 1.78e-175 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557030 | sp|Q9LM93|DPM1_ARATH | 86.307 | 241 | 33 | 0 | 3 | 243 | 6 | 246 | 8.10e-160 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557030 | A0A396IBZ2 | 98.354 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 8.52e-176 | 492 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0557030 | 0.835961 | 1.236637e-56 | -8.615850e-47 |
| Msa0020410 | Msa0557030 | 0.802718 | 4.910698e-49 | -8.615850e-47 |
| Msa0081650 | Msa0557030 | 0.815938 | 7.153911e-52 | -8.615850e-47 |
| Msa0090520 | Msa0557030 | 0.802455 | 5.565180e-49 | -8.615850e-47 |
| Msa0090570 | Msa0557030 | 0.801682 | 8.024774e-49 | -8.615850e-47 |
| Msa0183850 | Msa0557030 | 0.805375 | 1.376349e-49 | -8.615850e-47 |
| Msa0217700 | Msa0557030 | 0.815104 | 1.096676e-51 | -8.615850e-47 |
| Msa0233370 | Msa0557030 | 0.803580 | 3.257682e-49 | -8.615850e-47 |
| Msa0391400 | Msa0557030 | 0.802421 | 5.654239e-49 | -8.615850e-47 |
| Msa0403770 | Msa0557030 | 0.804847 | 1.774821e-49 | -8.615850e-47 |
| Msa0408300 | Msa0557030 | 0.814257 | 1.689427e-51 | -8.615850e-47 |
| Msa0296820 | Msa0557030 | 0.833964 | 3.939720e-56 | -8.615850e-47 |
| Msa0357900 | Msa0557030 | 0.803857 | 2.853604e-49 | -8.615850e-47 |
| Msa0532980 | Msa0557030 | 0.800556 | 1.363627e-48 | -8.615850e-47 |
| Msa0532990 | Msa0557030 | 0.801956 | 7.047887e-49 | -8.615850e-47 |
| Msa0557030 | Msa0620620 | 0.833843 | 4.223920e-56 | -8.615850e-47 |
| Msa0557030 | Msa0665280 | 0.813089 | 3.053826e-51 | -8.615850e-47 |
| Msa0557030 | Msa0711150 | 0.822452 | 2.351470e-53 | -8.615850e-47 |
| Msa0557030 | Msa0800370 | 0.807028 | 6.172895e-50 | -8.615850e-47 |
| Msa0557030 | Msa0822500 | 0.805074 | 1.591320e-49 | -8.615850e-47 |
| Msa0557030 | Msa0826760 | 0.842896 | 1.953660e-58 | -8.615850e-47 |
| Msa0557030 | Msa0827280 | 0.802110 | 6.553473e-49 | -8.615850e-47 |
| Msa0557030 | Msa0830230 | 0.805698 | 1.177462e-49 | -8.615850e-47 |
| Msa0557030 | Msa0859320 | 0.800036 | 1.740091e-48 | -8.615850e-47 |
| Msa0557030 | Msa1089320 | 0.843190 | 1.631935e-58 | -8.615850e-47 |
| Msa0557030 | Msa1206270 | 0.807729 | 4.385379e-50 | -8.615850e-47 |
| Msa0557030 | Msa1274560 | 0.801681 | 8.029550e-49 | -8.615850e-47 |
| Msa0557030 | Msa1336560 | 0.807444 | 5.040048e-50 | -8.615850e-47 |
| Msa0557030 | Msa1355890 | 0.806561 | 7.749600e-50 | -8.615850e-47 |
| Msa0557030 | Msa1358670 | 0.800149 | 1.650453e-48 | -8.615850e-47 |
| Msa0557030 | Msa1364210 | 0.844476 | 7.385236e-59 | -8.615850e-47 |
| Msa0557030 | Msa1380220 | 0.815842 | 7.513075e-52 | -8.615850e-47 |
| Msa0557030 | Msa1440310 | 0.802033 | 6.796240e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557030 | MtrunA17_Chr4g0046071 | 98.354 | 243 | 4 | 0 | 1 | 243 | 1 | 243 | 1.64e-179 | 492 |
| Msa0557030 | MtrunA17_Chr2g0328281 | 96.618 | 207 | 7 | 0 | 37 | 243 | 31 | 237 | 6.14e-149 | 414 |
| Msa0557030 | MtrunA17_Chr7g0223941 | 25.806 | 248 | 148 | 10 | 10 | 229 | 61 | 300 | 7.08e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557030 | AT1G20575.1 | 86.307 | 241 | 33 | 0 | 3 | 243 | 6 | 246 | 8.23e-161 | 445 |
| Msa0557030 | AT2G39630.1 | 23.984 | 246 | 151 | 4 | 13 | 229 | 69 | 307 | 1.93e-12 | 66.2 |
| Msa0557030 | AT2G39630.3 | 37.755 | 98 | 54 | 1 | 13 | 103 | 69 | 166 | 2.35e-11 | 62.0 |
| Msa0557030 | AT2G39630.2 | 37.755 | 98 | 54 | 1 | 13 | 103 | 69 | 166 | 2.61e-11 | 62.0 |
Find 84 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATTTGACAGGGTCTTTC+AGG | 0.128725 | 4_1:+55341405 | Msa0557030:CDS |
| ACAAATGTAGCTTTGTTCTT+AGG | 0.194379 | 4_1:-55343253 | None:intergenic |
| TTGTTATTTGTAGACTTTAT+AGG | 0.210565 | 4_1:+55341515 | Msa0557030:intron |
| AGGAAGCCTGGCAAATATTT+TGG | 0.222110 | 4_1:-55341158 | None:intergenic |
| GAAGATATACGAGGCCTTTC+AGG | 0.225607 | 4_1:-55342706 | None:intergenic |
| CAGACATCGGTTTCGCGTTC+TGG | 0.241665 | 4_1:+55339464 | Msa0557030:five_prime_UTR |
| TAGTAGTTCTATTTCCATTT+AGG | 0.247624 | 4_1:-55343030 | None:intergenic |
| ACTGAAGGTGCTTGAATATA+AGG | 0.251080 | 4_1:-55340213 | None:intergenic |
| AACTTGTGTCCTCAATAATT+AGG | 0.253475 | 4_1:-55342809 | None:intergenic |
| AAACAACTGCAACAGGTTTA+TGG | 0.254808 | 4_1:+55340594 | Msa0557030:CDS |
| CGACTAACAATTGCTTGATA+TGG | 0.266747 | 4_1:-55339524 | None:intergenic |
| GCATCTGTATGGAATATATA+CGG | 0.281642 | 4_1:+55342877 | Msa0557030:three_prime_UTR |
| ACTGGGACTCGTTATGTTAA+AGG | 0.286017 | 4_1:+55341293 | Msa0557030:CDS |
| AATATGTAACGCTTCCTAAA+TGG | 0.292391 | 4_1:+55343016 | Msa0557030:three_prime_UTR |
| AATTATTGAGGACACAAGTT+TGG | 0.319126 | 4_1:+55342812 | Msa0557030:three_prime_UTR |
| ACATTTGTCGATAGAGTATA+TGG | 0.335361 | 4_1:+55342647 | Msa0557030:CDS |
| GCAGGAACGGCTTATATTCA+TGG | 0.336863 | 4_1:+55340946 | Msa0557030:intron |
| TTCAGAAAACAGTTGGAAAC+TGG | 0.361295 | 4_1:+55341257 | Msa0557030:intron |
| ATTGTTTATGACTTGTTATA+TGG | 0.369214 | 4_1:+55343345 | Msa0557030:three_prime_UTR |
| ATTTATGCTGATCCATTTGC+TGG | 0.369299 | 4_1:+55342968 | Msa0557030:three_prime_UTR |
| ACTGGTGCTGATATAGTTAC+TGG | 0.378760 | 4_1:+55341275 | Msa0557030:CDS |
| TATTAGTTGCTGTGTTAGTA+AGG | 0.383935 | 4_1:+55341558 | Msa0557030:CDS |
| ATTAATGATTGGTGACTAGA+AGG | 0.397263 | 4_1:-55342996 | None:intergenic |
| GCAACTGCACCTCTTCAATA+TGG | 0.398792 | 4_1:-55341630 | None:intergenic |
| AATCATCAATATTTGCCAAC+AGG | 0.400745 | 4_1:-55342917 | None:intergenic |
| AGACCTAGGAAGATGGGTTT+AGG | 0.409396 | 4_1:+55340778 | Msa0557030:CDS |
| TGTTGTAAAACAACTGCAAC+AGG | 0.416602 | 4_1:+55340587 | Msa0557030:CDS |
| ATTATTGAGGACACAAGTTT+GGG | 0.417801 | 4_1:+55342813 | Msa0557030:three_prime_UTR |
| AATATTTGCCAGGCTTCCTT+AGG | 0.431974 | 4_1:+55341162 | Msa0557030:CDS |
| AAGCGTTACATATTAATGAT+TGG | 0.438616 | 4_1:-55343007 | None:intergenic |
| GTTTCAAGTTTAGGTTAGAA+TGG | 0.440267 | 4_1:+55340105 | Msa0557030:intron |
| CATGGCATGAAGCATGCATC+TGG | 0.445124 | 4_1:+55340964 | Msa0557030:CDS |
| TCGGCAGATCCTGCTGCCGC+TGG | 0.446463 | 4_1:+55339547 | Msa0557030:five_prime_UTR |
| TAAGGGATATGTCTTTCAAA+TGG | 0.448303 | 4_1:+55341576 | Msa0557030:CDS |
| CTGCAGCCAAAATATTTGCC+AGG | 0.455165 | 4_1:+55341152 | Msa0557030:intron |
| CCTGGTGTCTCAGATTTGAC+AGG | 0.470074 | 4_1:+55341395 | Msa0557030:CDS |
| ATACCTAAACCCATCTTCCT+AGG | 0.477853 | 4_1:-55340781 | None:intergenic |
| AAGGTGGTGGTGTGCATGGA+TGG | 0.480388 | 4_1:+55341312 | Msa0557030:CDS |
| ATAGTTCGAGCATCCAGAAA+AGG | 0.481126 | 4_1:+55341604 | Msa0557030:CDS |
| ACTCTATCGACAAATGTGAT+TGG | 0.489293 | 4_1:-55342641 | None:intergenic |
| TGCTTGATATGGAAAATAGA+AGG | 0.493720 | 4_1:-55339513 | None:intergenic |
| ACAACATCCTGGGTACCATC+AGG | 0.496739 | 4_1:-55340570 | None:intergenic |
| GATTTAATATAATCATGTGT+TGG | 0.509846 | 4_1:+55343144 | Msa0557030:three_prime_UTR |
| TTTACTTACCTAAGGAAGCC+TGG | 0.511532 | 4_1:-55341170 | None:intergenic |
| GTTAAAGGTGGTGGTGTGCA+TGG | 0.512654 | 4_1:+55341308 | Msa0557030:CDS |
| ATTAGTTGCTGTGTTAGTAA+GGG | 0.512925 | 4_1:+55341559 | Msa0557030:CDS |
| AAGAGCGAGACCTAGGAAGA+TGG | 0.517078 | 4_1:+55340771 | Msa0557030:CDS |
| AAACATAAATGATAACAACT+TGG | 0.523193 | 4_1:+55342742 | Msa0557030:exon |
| CTGGTGCTGATATAGTTACT+GGG | 0.535891 | 4_1:+55341276 | Msa0557030:CDS |
| AAGTTATTGTTGTGGACGAT+GGG | 0.536570 | 4_1:+55340544 | Msa0557030:CDS |
| AACATAAATGATAACAACTT+GGG | 0.538677 | 4_1:+55342743 | Msa0557030:three_prime_UTR |
| TAGTTCGAGCATCCAGAAAA+GGG | 0.542215 | 4_1:+55341605 | Msa0557030:CDS |
| TTGAGTCGCTCGTTATATGT+AGG | 0.542448 | 4_1:-55340172 | None:intergenic |
| TTATGCGCAAACTAACAAGC+AGG | 0.553714 | 4_1:+55341339 | Msa0557030:CDS |
| TGAATATAAGGTAAAGAATG+AGG | 0.557227 | 4_1:-55340201 | None:intergenic |
| ACTCGTTATGTTAAAGGTGG+TGG | 0.558403 | 4_1:+55341299 | Msa0557030:CDS |
| GTATATGGAAGTTCAAAGCT+TGG | 0.558444 | 4_1:+55342662 | Msa0557030:CDS |
| ACTTCAGTTCCAGCGGCAGC+AGG | 0.558522 | 4_1:-55339556 | None:intergenic |
| AGAGCGAGACCTAGGAAGAT+GGG | 0.559994 | 4_1:+55340772 | Msa0557030:CDS |
| ACTACTTTGTGACTCAGTCT+AGG | 0.563446 | 4_1:+55343049 | Msa0557030:three_prime_UTR |
| CTGGTGTCTCAGATTTGACA+GGG | 0.567238 | 4_1:+55341396 | Msa0557030:CDS |
| AACATTCGACACCGATGTGT+CGG | 0.570539 | 4_1:-55343097 | None:intergenic |
| GAAGTTATTGTTGTGGACGA+TGG | 0.573289 | 4_1:+55340543 | Msa0557030:CDS |
| CATCTGTATGGAATATATAC+GGG | 0.578060 | 4_1:+55342878 | Msa0557030:three_prime_UTR |
| ATCAAGCAATTGTTAGTCGT+CGG | 0.584365 | 4_1:+55339528 | Msa0557030:five_prime_UTR |
| GTGAGAGGAGACTAATAAAG+AGG | 0.589918 | 4_1:+55343274 | Msa0557030:three_prime_UTR |
| GAGATTGTTGAATACCTGAA+AGG | 0.601655 | 4_1:+55342692 | Msa0557030:CDS |
| AGCTGTTAAGAGCGAGACCT+AGG | 0.614252 | 4_1:+55340764 | Msa0557030:intron |
| TATGCGCAAACTAACAAGCA+GGG | 0.621645 | 4_1:+55341340 | Msa0557030:CDS |
| CCTGTCAAATCTGAGACACC+AGG | 0.627249 | 4_1:-55341395 | None:intergenic |
| TGGGAGTCCTGATGGTACCC+AGG | 0.629966 | 4_1:+55340563 | Msa0557030:CDS |
| GTGGACGATGGGAGTCCTGA+TGG | 0.630791 | 4_1:+55340555 | Msa0557030:CDS |
| TATGGAAGTTCAAAGCTTGG+TGG | 0.635176 | 4_1:+55342665 | Msa0557030:CDS |
| AACAAAGCTACATTTGTGAG+AGG | 0.637278 | 4_1:+55343259 | Msa0557030:three_prime_UTR |
| ACAGAAACATGTCTAATCTG+AGG | 0.658433 | 4_1:+55343203 | Msa0557030:three_prime_UTR |
| ATGCGCAAACTAACAAGCAG+GGG | 0.658767 | 4_1:+55341341 | Msa0557030:CDS |
| AAAAGGGTACCATATTGAAG+AGG | 0.662883 | 4_1:+55341621 | Msa0557030:CDS |
| AACTAACAAAATGACGTAGG+TGG | 0.667987 | 4_1:-55343299 | None:intergenic |
| GGGACTCGTTATGTTAAAGG+TGG | 0.674532 | 4_1:+55341296 | Msa0557030:CDS |
| TAAAACTAACAAAATGACGT+AGG | 0.679290 | 4_1:-55343302 | None:intergenic |
| TGAGACAAACACCGACACAT+CGG | 0.681862 | 4_1:+55343086 | Msa0557030:three_prime_UTR |
| AATGCACACTTCAGTTCCAG+CGG | 0.709617 | 4_1:-55339563 | None:intergenic |
| TTTCTGTGTCAGACAGACGT+TGG | 0.731895 | 4_1:-55343187 | None:intergenic |
| TTGTGATCAGAAGATATACG+AGG | 0.761495 | 4_1:-55342715 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTTCAATATTAATTATA+AGG | + | chr4_1:55340276-55340295 | Msa0557030:intron | 10.0% |
| !!! | TGATATGTAATTTTACATTT+TGG | + | chr4_1:55340299-55340318 | Msa0557030:intron | 15.0% |
| !!! | GATATGTAATTTTACATTTT+GGG | + | chr4_1:55340300-55340319 | Msa0557030:intron | 15.0% |
| !!! | ATATGTAATTTTACATTTTG+GGG | + | chr4_1:55340301-55340320 | Msa0557030:intron | 15.0% |
| !! | ATATATCAAGATGTTATAAA+TGG | - | chr4_1:55341759-55341778 | None:intergenic | 15.0% |
| !!! | ATCTATTTTGCATATATTTA+AGG | + | chr4_1:55342446-55342465 | Msa0557030:intron | 15.0% |
| !!! | TTTTGTTAGTTTTATAACTT+CGG | + | chr4_1:55343311-55343330 | Msa0557030:three_prime_UTR | 15.0% |
| !!! | AATGCCTTTTAGAATTTATA+GGG | + | chr4_1:55340448-55340467 | Msa0557030:intron | 20.0% |
| !!! | TTGTTATTTGTAGACTTTAT+AGG | + | chr4_1:55341515-55341534 | Msa0557030:intron | 20.0% |
| !!! | TCACAAGTTTTATGAATAAA+AGG | - | chr4_1:55341818-55341837 | None:intergenic | 20.0% |
| !! | TAAATCCTATGTCAATAAAA+AGG | - | chr4_1:55341858-55341877 | None:intergenic | 20.0% |
| !! | ATTCTATTCCATATATTGAT+AGG | + | chr4_1:55342081-55342100 | Msa0557030:intron | 20.0% |
| !! | TAACTAATAGTAGAAAGAAT+CGG | - | chr4_1:55342285-55342304 | None:intergenic | 20.0% |
| !! | ATTCTTTCTACTATTAGTTA+TGG | + | chr4_1:55342285-55342304 | Msa0557030:intron | 20.0% |
| !! | CTCTAAATCTTAATATTGAT+AGG | + | chr4_1:55342348-55342367 | Msa0557030:intron | 20.0% |
| !! | AAACATAAATGATAACAACT+TGG | + | chr4_1:55342742-55342761 | Msa0557030:exon | 20.0% |
| !! | AACATAAATGATAACAACTT+GGG | + | chr4_1:55342743-55342762 | Msa0557030:three_prime_UTR | 20.0% |
| !! | GATTTAATATAATCATGTGT+TGG | + | chr4_1:55343144-55343163 | Msa0557030:three_prime_UTR | 20.0% |
| ! | GGTAACAAAAAAAAAGTCAT+TGG | + | chr4_1:55339485-55339504 | Msa0557030:five_prime_UTR | 25.0% |
| !! | AAAGAGATTTTCGTAATTAC+GGG | - | chr4_1:55339733-55339752 | None:intergenic | 25.0% |
| !! | GAAAGAGATTTTCGTAATTA+CGG | - | chr4_1:55339734-55339753 | None:intergenic | 25.0% |
| !! | TCTTTCCTCTTTTATAATCA+GGG | + | chr4_1:55339748-55339767 | Msa0557030:intron | 25.0% |
| ! | ATTACTCGATTATACGAATT+TGG | + | chr4_1:55339799-55339818 | Msa0557030:intron | 25.0% |
| ! | TTACTCGATTATACGAATTT+GGG | + | chr4_1:55339800-55339819 | Msa0557030:intron | 25.0% |
| ! | AACATATGTCAGCAAAATAT+GGG | - | chr4_1:55340034-55340053 | None:intergenic | 25.0% |
| ! | AAACATATGTCAGCAAAATA+TGG | - | chr4_1:55340035-55340054 | None:intergenic | 25.0% |
| ! | TGAACTATCACATATATGTA+AGG | - | chr4_1:55340059-55340078 | None:intergenic | 25.0% |
| ! | TGAATATAAGGTAAAGAATG+AGG | - | chr4_1:55340204-55340223 | None:intergenic | 25.0% |
| ! | TATGAATCATATGTGGATAA+TGG | + | chr4_1:55340339-55340358 | Msa0557030:intron | 25.0% |
| !!! | GAATGCCTTTTAGAATTTAT+AGG | + | chr4_1:55340447-55340466 | Msa0557030:intron | 25.0% |
| ! | ATAGCCCTATAAATTCTAAA+AGG | - | chr4_1:55340455-55340474 | None:intergenic | 25.0% |
| !! | TCTTTTTGCTTCTCAATTTT+AGG | + | chr4_1:55340508-55340527 | Msa0557030:intron | 25.0% |
| !! | CTTTTTGCTTCTCAATTTTA+GGG | + | chr4_1:55340509-55340528 | Msa0557030:intron | 25.0% |
| !!! | TGATTTTGAAGTTATTGTTG+TGG | + | chr4_1:55340536-55340555 | Msa0557030:CDS | 25.0% |
| ! | TATAAATGACTAGTGATTTG+TGG | + | chr4_1:55340664-55340683 | Msa0557030:intron | 25.0% |
| !!! | TTGTGGTCTATTCTATTTTT+TGG | + | chr4_1:55340681-55340700 | Msa0557030:intron | 25.0% |
| !!! | TGTGGTCTATTCTATTTTTT+GGG | + | chr4_1:55340682-55340701 | Msa0557030:intron | 25.0% |
| ! | ACTCTAAATGATATGATGAA+GGG | - | chr4_1:55340720-55340739 | None:intergenic | 25.0% |
| ! | TACTCTAAATGATATGATGA+AGG | - | chr4_1:55340721-55340740 | None:intergenic | 25.0% |
| !! | ATAATGTTTTATCACATCAG+AGG | - | chr4_1:55340845-55340864 | None:intergenic | 25.0% |
| ! | TCTGATGTGATAAAACATTA+TGG | + | chr4_1:55340844-55340863 | Msa0557030:intron | 25.0% |
| !!! | TGGAAATTTTGTTGTCATTA+TGG | + | chr4_1:55340984-55341003 | Msa0557030:CDS | 25.0% |
| ! | TTAAAAGCTTTACTTACCTA+AGG | - | chr4_1:55341181-55341200 | None:intergenic | 25.0% |
| !!! | CTGTTTTCTGAAAAACAAAA+GGG | - | chr4_1:55341249-55341268 | None:intergenic | 25.0% |
| !!! | ACTGTTTTCTGAAAAACAAA+AGG | - | chr4_1:55341250-55341269 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTCAGAAAACAGT+TGG | + | chr4_1:55341250-55341269 | Msa0557030:intron | 25.0% |
| ! | TTCTATTCTTTACATTAACC+TGG | + | chr4_1:55341664-55341683 | Msa0557030:intron | 25.0% |
| !! | AAAAGGTACATGTTAGATAT+CGG | - | chr4_1:55341801-55341820 | None:intergenic | 25.0% |
| ! | TGATCAATTGTGACTTAATA+AGG | - | chr4_1:55341981-55342000 | None:intergenic | 25.0% |
| !! | ATCTTTTGCGATTATCATTT+CGG | - | chr4_1:55342241-55342260 | None:intergenic | 25.0% |
| ! | AACTAATAGTAGAAAGAATC+GGG | - | chr4_1:55342284-55342303 | None:intergenic | 25.0% |
| ! | TCTTAATATTGATAGGCTAT+TGG | + | chr4_1:55342355-55342374 | Msa0557030:intron | 25.0% |
| !! | TTTTGCATATATTTAAGGAG+AGG | + | chr4_1:55342451-55342470 | Msa0557030:intron | 25.0% |
| ! | GTTCAAAAACCTAATTATTG+AGG | + | chr4_1:55342800-55342819 | Msa0557030:three_prime_UTR | 25.0% |
| ! | AAGCGTTACATATTAATGAT+TGG | - | chr4_1:55343010-55343029 | None:intergenic | 25.0% |
| !! | TAGTAGTTCTATTTCCATTT+AGG | - | chr4_1:55343033-55343052 | None:intergenic | 25.0% |
| ! | TAAAACTAACAAAATGACGT+AGG | - | chr4_1:55343305-55343324 | None:intergenic | 25.0% |
| TGCTTGATATGGAAAATAGA+AGG | - | chr4_1:55339516-55339535 | None:intergenic | 30.0% | |
| ! | CTCTTTCCTCTTTTATAATC+AGG | + | chr4_1:55339747-55339766 | Msa0557030:intron | 30.0% |
| TTTATAATCAGGGCCTTAAT+TGG | + | chr4_1:55339758-55339777 | Msa0557030:intron | 30.0% | |
| AAGATCAGACAATCCAATTA+AGG | - | chr4_1:55339774-55339793 | None:intergenic | 30.0% | |
| TTATGAAATGACGATGAACA+TGG | + | chr4_1:55339907-55339926 | Msa0557030:intron | 30.0% | |
| AGCTCGTATTAAGCTATAAT+TGG | + | chr4_1:55339983-55340002 | Msa0557030:intron | 30.0% | |
| TCGTATTAAGCTATAATTGG+TGG | + | chr4_1:55339986-55340005 | Msa0557030:intron | 30.0% | |
| ATCAAACTCACTATATTGAG+TGG | + | chr4_1:55340078-55340097 | Msa0557030:intron | 30.0% | |
| !! | AGTGGATTTGTTTCAAGTTT+AGG | + | chr4_1:55340096-55340115 | Msa0557030:intron | 30.0% |
| !! | GTTTCAAGTTTAGGTTAGAA+TGG | + | chr4_1:55340105-55340124 | Msa0557030:intron | 30.0% |
| AGAGATAGAGAAATTACTGA+AGG | - | chr4_1:55340231-55340250 | None:intergenic | 30.0% | |
| ACGTTCTTATGAATCATATG+TGG | + | chr4_1:55340332-55340351 | Msa0557030:intron | 30.0% | |
| ! | TTTCCATCTCTTCCAATTTT+GGG | - | chr4_1:55340414-55340433 | None:intergenic | 30.0% |
| ! | ATTTCCATCTCTTCCAATTT+TGG | - | chr4_1:55340415-55340434 | None:intergenic | 30.0% |
| !! | ATGTGATTAATTTGCAGGAA+CGG | + | chr4_1:55340933-55340952 | Msa0557030:intron | 30.0% |
| !! | TTTTCTGAAAAACAAAAGGG+AGG | - | chr4_1:55341246-55341265 | None:intergenic | 30.0% |
| ! | TTCTTGCACAAACACTTTTA+TGG | + | chr4_1:55341372-55341391 | Msa0557030:CDS | 30.0% |
| TCAGGTAAAGAGATTGATAA+TGG | + | chr4_1:55341423-55341442 | Msa0557030:intron | 30.0% | |
| AAAACACTCACTAAACTTTG+AGG | - | chr4_1:55341452-55341471 | None:intergenic | 30.0% | |
| TATTAGTTGCTGTGTTAGTA+AGG | + | chr4_1:55341558-55341577 | Msa0557030:CDS | 30.0% | |
| ATTAGTTGCTGTGTTAGTAA+GGG | + | chr4_1:55341559-55341578 | Msa0557030:CDS | 30.0% | |
| TAAGGGATATGTCTTTCAAA+TGG | + | chr4_1:55341576-55341595 | Msa0557030:CDS | 30.0% | |
| AAAACTTGTGAACTGAATGA+TGG | + | chr4_1:55341827-55341846 | Msa0557030:intron | 30.0% | |
| ! | CACATCCTTTTTATTGACAT+AGG | + | chr4_1:55341850-55341869 | Msa0557030:intron | 30.0% |
| !!! | TCAGCATGTGTTTTTTGTAA+AGG | + | chr4_1:55342029-55342048 | Msa0557030:intron | 30.0% |
| TATGGAATAGAATGTCTACA+TGG | - | chr4_1:55342074-55342093 | None:intergenic | 30.0% | |
| TCCATATATTGATAGGCTAT+TGG | + | chr4_1:55342088-55342107 | Msa0557030:intron | 30.0% | |
| ACCAATAGCCTATCAATATA+TGG | - | chr4_1:55342092-55342111 | None:intergenic | 30.0% | |
| GAAATGATAATCGCAAAAGA+TGG | + | chr4_1:55342240-55342259 | Msa0557030:intron | 30.0% | |
| CAAAAGATGGAAATTATTCC+AGG | + | chr4_1:55342253-55342272 | Msa0557030:intron | 30.0% | |
| CATCTATGCAACAAGTATTT+GGG | - | chr4_1:55342544-55342563 | None:intergenic | 30.0% | |
| AAAGTGAATAAGCTCAAACA+GGG | - | chr4_1:55342588-55342607 | None:intergenic | 30.0% | |
| ACATTTGTCGATAGAGTATA+TGG | + | chr4_1:55342647-55342666 | Msa0557030:CDS | 30.0% | |
| AACTTGTGTCCTCAATAATT+AGG | - | chr4_1:55342812-55342831 | None:intergenic | 30.0% | |
| AATTATTGAGGACACAAGTT+TGG | + | chr4_1:55342812-55342831 | Msa0557030:three_prime_UTR | 30.0% | |
| ATTATTGAGGACACAAGTTT+GGG | + | chr4_1:55342813-55342832 | Msa0557030:three_prime_UTR | 30.0% | |
| !!! | GCTCACTTTTTGAATTTTGT+AGG | + | chr4_1:55342852-55342871 | Msa0557030:three_prime_UTR | 30.0% |
| GCATCTGTATGGAATATATA+CGG | + | chr4_1:55342877-55342896 | Msa0557030:three_prime_UTR | 30.0% | |
| CATCTGTATGGAATATATAC+GGG | + | chr4_1:55342878-55342897 | Msa0557030:three_prime_UTR | 30.0% | |
| AATCATCAATATTTGCCAAC+AGG | - | chr4_1:55342920-55342939 | None:intergenic | 30.0% | |
| ! | ATTAATGATTGGTGACTAGA+AGG | - | chr4_1:55342999-55343018 | None:intergenic | 30.0% |
| AATATGTAACGCTTCCTAAA+TGG | + | chr4_1:55343016-55343035 | Msa0557030:three_prime_UTR | 30.0% | |
| !! | ACAAATGTAGCTTTGTTCTT+AGG | - | chr4_1:55343256-55343275 | None:intergenic | 30.0% |
| CGACTAACAATTGCTTGATA+TGG | - | chr4_1:55339527-55339546 | None:intergenic | 35.0% | |
| ATCAAGCAATTGTTAGTCGT+CGG | + | chr4_1:55339528-55339547 | Msa0557030:five_prime_UTR | 35.0% | |
| ! | ACATTCTGCGTTCATTTTGT+AGG | + | chr4_1:55339602-55339621 | Msa0557030:intron | 35.0% |
| !! | TCGTAATTACGGGTTTTAAC+AGG | - | chr4_1:55339723-55339742 | None:intergenic | 35.0% |
| TAAGGCCCTGATTATAAAAG+AGG | - | chr4_1:55339756-55339775 | None:intergenic | 35.0% | |
| AATCCCTATATATGAGTGGA+GGG | - | chr4_1:55339866-55339885 | None:intergenic | 35.0% | |
| GATGAATCCCTATATATGAG+TGG | - | chr4_1:55339870-55339889 | None:intergenic | 35.0% | |
| TGACATAATGCATGTGAGTA+AGG | - | chr4_1:55339958-55339977 | None:intergenic | 35.0% | |
| !! | ACTGAAGGTGCTTGAATATA+AGG | - | chr4_1:55340216-55340235 | None:intergenic | 35.0% |
| ! | CTTCCTTTTCAACCCAAAAT+TGG | + | chr4_1:55340399-55340418 | Msa0557030:intron | 35.0% |
| !!! | CTTCCAATTTTGGGTTGAAA+AGG | - | chr4_1:55340405-55340424 | None:intergenic | 35.0% |
| AAGTTATTGTTGTGGACGAT+GGG | + | chr4_1:55340544-55340563 | Msa0557030:CDS | 35.0% | |
| !! | CAGTTGTTTTACAACATCCT+GGG | - | chr4_1:55340583-55340602 | None:intergenic | 35.0% |
| TGTTGTAAAACAACTGCAAC+AGG | + | chr4_1:55340587-55340606 | Msa0557030:CDS | 35.0% | |
| AAACAACTGCAACAGGTTTA+TGG | + | chr4_1:55340594-55340613 | Msa0557030:CDS | 35.0% | |
| AGTAACCGTGTATATTCTTG+TGG | + | chr4_1:55340737-55340756 | Msa0557030:intron | 35.0% | |
| CTGCAAATTAATCACATCAG+AGG | - | chr4_1:55340930-55340949 | None:intergenic | 35.0% | |
| !! | CTCTGATGTGATTAATTTGC+AGG | + | chr4_1:55340928-55340947 | Msa0557030:intron | 35.0% |
| TTCAGAAAACAGTTGGAAAC+TGG | + | chr4_1:55341257-55341276 | Msa0557030:intron | 35.0% | |
| AACCAATCAAGTGATCAACA+GGG | - | chr4_1:55341479-55341498 | None:intergenic | 35.0% | |
| AAACCAATCAAGTGATCAAC+AGG | - | chr4_1:55341480-55341499 | None:intergenic | 35.0% | |
| ! | TTCAATATGGTACCCTTTTC+TGG | - | chr4_1:55341620-55341639 | None:intergenic | 35.0% |
| !! | AAAAGGGTACCATATTGAAG+AGG | + | chr4_1:55341621-55341640 | Msa0557030:CDS | 35.0% |
| ATGAAGTTGACATAACAACC+AGG | - | chr4_1:55341685-55341704 | None:intergenic | 35.0% | |
| GGATTAGGGAATATATGCAT+TGG | - | chr4_1:55341932-55341951 | None:intergenic | 35.0% | |
| TGTCTACATGGATAAGTACA+TGG | - | chr4_1:55342062-55342081 | None:intergenic | 35.0% | |
| ATTAACGTTGCCAATTTGAC+TGG | + | chr4_1:55342178-55342197 | Msa0557030:intron | 35.0% | |
| TGTATAACTGCCAGTCAAAT+TGG | - | chr4_1:55342191-55342210 | None:intergenic | 35.0% | |
| TATGCAACAAGTATTTGGGA+AGG | - | chr4_1:55342540-55342559 | None:intergenic | 35.0% | |
| CCATCTATGCAACAAGTATT+TGG | - | chr4_1:55342545-55342564 | None:intergenic | 35.0% | |
| ! | CCAAATACTTGTTGCATAGA+TGG | + | chr4_1:55342542-55342561 | Msa0557030:intron | 35.0% |
| CAAAGTGAATAAGCTCAAAC+AGG | - | chr4_1:55342589-55342608 | None:intergenic | 35.0% | |
| ACTCTATCGACAAATGTGAT+TGG | - | chr4_1:55342644-55342663 | None:intergenic | 35.0% | |
| GTATATGGAAGTTCAAAGCT+TGG | + | chr4_1:55342662-55342681 | Msa0557030:CDS | 35.0% | |
| GAGATTGTTGAATACCTGAA+AGG | + | chr4_1:55342692-55342711 | Msa0557030:CDS | 35.0% | |
| TTGTGATCAGAAGATATACG+AGG | - | chr4_1:55342718-55342737 | None:intergenic | 35.0% | |
| !!! | TTTTGTAGGAAGCATCTGTA+TGG | + | chr4_1:55342866-55342885 | Msa0557030:three_prime_UTR | 35.0% |
| ATTTATGCTGATCCATTTGC+TGG | + | chr4_1:55342968-55342987 | Msa0557030:three_prime_UTR | 35.0% | |
| TAGAAGGAAAAACCAGCAAA+TGG | - | chr4_1:55342983-55343002 | None:intergenic | 35.0% | |
| ACAGAAACATGTCTAATCTG+AGG | + | chr4_1:55343203-55343222 | Msa0557030:three_prime_UTR | 35.0% | |
| AACAAAGCTACATTTGTGAG+AGG | + | chr4_1:55343259-55343278 | Msa0557030:three_prime_UTR | 35.0% | |
| AACTAACAAAATGACGTAGG+TGG | - | chr4_1:55343302-55343321 | None:intergenic | 35.0% | |
| !!! | ATGCATTTTGGAGCAGACAT+CGG | + | chr4_1:55339451-55339470 | Msa0557030:five_prime_UTR | 40.0% |
| ACAGAAATAGATGCGATCAC+AGG | - | chr4_1:55339674-55339693 | None:intergenic | 40.0% | |
| GAATGATGCTATCTTACACC+GGG | - | chr4_1:55339701-55339720 | None:intergenic | 40.0% | |
| GGAATGATGCTATCTTACAC+CGG | - | chr4_1:55339702-55339721 | None:intergenic | 40.0% | |
| ATGTCCCTCCACTCATATAT+AGG | + | chr4_1:55339859-55339878 | Msa0557030:intron | 40.0% | |
| TGTCCCTCCACTCATATATA+GGG | + | chr4_1:55339860-55339879 | Msa0557030:intron | 40.0% | |
| GAATCCCTATATATGAGTGG+AGG | - | chr4_1:55339867-55339886 | None:intergenic | 40.0% | |
| TTGAGTCGCTCGTTATATGT+AGG | - | chr4_1:55340175-55340194 | None:intergenic | 40.0% | |
| CAACCCAAAATTGGAAGAGA+TGG | + | chr4_1:55340408-55340427 | Msa0557030:intron | 40.0% | |
| GAAGTTATTGTTGTGGACGA+TGG | + | chr4_1:55340543-55340562 | Msa0557030:CDS | 40.0% | |
| !! | GCAGTTGTTTTACAACATCC+TGG | - | chr4_1:55340584-55340603 | None:intergenic | 40.0% |
| TGCAGCCACAAGAATATACA+CGG | - | chr4_1:55340745-55340764 | None:intergenic | 40.0% | |
| ATACCTAAACCCATCTTCCT+AGG | - | chr4_1:55340784-55340803 | None:intergenic | 40.0% | |
| ACTGAACAGAGCAACTTACA+TGG | - | chr4_1:55341026-55341045 | None:intergenic | 40.0% | |
| ! | AGGAAGCCTGGCAAATATTT+TGG | - | chr4_1:55341161-55341180 | None:intergenic | 40.0% |
| AATATTTGCCAGGCTTCCTT+AGG | + | chr4_1:55341162-55341181 | Msa0557030:CDS | 40.0% | |
| TTTACTTACCTAAGGAAGCC+TGG | - | chr4_1:55341173-55341192 | None:intergenic | 40.0% | |
| ! | AAAAGGGAGGAGTTAAGTTG+TGG | - | chr4_1:55341233-55341252 | None:intergenic | 40.0% |
| !! | ACTGGTGCTGATATAGTTAC+TGG | + | chr4_1:55341275-55341294 | Msa0557030:CDS | 40.0% |
| !! | CTGGTGCTGATATAGTTACT+GGG | + | chr4_1:55341276-55341295 | Msa0557030:CDS | 40.0% |
| ACTGGGACTCGTTATGTTAA+AGG | + | chr4_1:55341293-55341312 | Msa0557030:CDS | 40.0% | |
| ACTCGTTATGTTAAAGGTGG+TGG | + | chr4_1:55341299-55341318 | Msa0557030:CDS | 40.0% | |
| TTATGCGCAAACTAACAAGC+AGG | + | chr4_1:55341339-55341358 | Msa0557030:CDS | 40.0% | |
| TATGCGCAAACTAACAAGCA+GGG | + | chr4_1:55341340-55341359 | Msa0557030:CDS | 40.0% | |
| ATAGTTCGAGCATCCAGAAA+AGG | + | chr4_1:55341604-55341623 | Msa0557030:CDS | 40.0% | |
| TAGTTCGAGCATCCAGAAAA+GGG | + | chr4_1:55341605-55341624 | Msa0557030:CDS | 40.0% | |
| CATTTCTATAATCCACCAGC+AGG | - | chr4_1:55341904-55341923 | None:intergenic | 40.0% | |
| TGTATGTACTTTGTCCGTTG+AGG | + | chr4_1:55342003-55342022 | Msa0557030:intron | 40.0% | |
| !! | ATAGGCTATTGGTCTTCTGT+AGG | + | chr4_1:55342099-55342118 | Msa0557030:intron | 40.0% |
| ! | AAGTCTTATCCCACTAAGTG+GGG | - | chr4_1:55342395-55342414 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCCCACTAAGT+GGG | - | chr4_1:55342396-55342415 | None:intergenic | 40.0% |
| GAGAGGATTTGAATGCTTGT+TGG | + | chr4_1:55342468-55342487 | Msa0557030:intron | 40.0% | |
| TATGGAAGTTCAAAGCTTGG+TGG | + | chr4_1:55342665-55342684 | Msa0557030:CDS | 40.0% | |
| CCAACAGGCTTAAAAACACA+GGG | - | chr4_1:55342905-55342924 | None:intergenic | 40.0% | |
| ACTACTTTGTGACTCAGTCT+AGG | + | chr4_1:55343049-55343068 | Msa0557030:three_prime_UTR | 40.0% | |
| GTGAGAGGAGACTAATAAAG+AGG | + | chr4_1:55343274-55343293 | Msa0557030:three_prime_UTR | 40.0% | |
| AATGCACACTTCAGTTCCAG+CGG | - | chr4_1:55339566-55339585 | None:intergenic | 45.0% | |
| !! | GCATCTATTTCTGTTCCACC+CGG | + | chr4_1:55339680-55339699 | Msa0557030:intron | 45.0% |
| ! | AGACCTAGGAAGATGGGTTT+AGG | + | chr4_1:55340778-55340797 | Msa0557030:CDS | 45.0% |
| ! | ACTAAGTGGGTTCAGCTACA+TGG | - | chr4_1:55340881-55340900 | None:intergenic | 45.0% |
| ATGTAGCTGAACCCACTTAG+TGG | + | chr4_1:55340880-55340899 | Msa0557030:intron | 45.0% | |
| TGTAGCTGAACCCACTTAGT+GGG | + | chr4_1:55340881-55340900 | Msa0557030:intron | 45.0% | |
| TGAACCCACTTAGTGGGATA+AGG | + | chr4_1:55340887-55340906 | Msa0557030:intron | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4_1:55340894-55340913 | None:intergenic | 45.0% |
| GCAGGAACGGCTTATATTCA+TGG | + | chr4_1:55340946-55340965 | Msa0557030:intron | 45.0% | |
| CTGCAGCCAAAATATTTGCC+AGG | + | chr4_1:55341152-55341171 | Msa0557030:intron | 45.0% | |
| GGGACTCGTTATGTTAAAGG+TGG | + | chr4_1:55341296-55341315 | Msa0557030:CDS | 45.0% | |
| ATGCGCAAACTAACAAGCAG+GGG | + | chr4_1:55341341-55341360 | Msa0557030:CDS | 45.0% | |
| ! | GCACAAACACTTTTATGGCC+TGG | + | chr4_1:55341377-55341396 | Msa0557030:CDS | 45.0% |
| CTGGTGTCTCAGATTTGACA+GGG | + | chr4_1:55341396-55341415 | Msa0557030:CDS | 45.0% | |
| CAGATTTGACAGGGTCTTTC+AGG | + | chr4_1:55341405-55341424 | Msa0557030:CDS | 45.0% | |
| CTCCCTGTTGATCACTTGAT+TGG | + | chr4_1:55341474-55341493 | Msa0557030:intron | 45.0% | |
| GCAACTGCACCTCTTCAATA+TGG | - | chr4_1:55341633-55341652 | None:intergenic | 45.0% | |
| TACACTTTACAGATGCCTGC+TGG | + | chr4_1:55341886-55341905 | Msa0557030:intron | 45.0% | |
| GCATATATTCCCTAATCCCG+TGG | + | chr4_1:55341934-55341953 | Msa0557030:intron | 45.0% | |
| TCATAGTCAACTGAAGCCAC+GGG | - | chr4_1:55341953-55341972 | None:intergenic | 45.0% | |
| GTCATAGTCAACTGAAGCCA+CGG | - | chr4_1:55341954-55341973 | None:intergenic | 45.0% | |
| ACACATGCTGATAGCCTCAA+CGG | - | chr4_1:55342020-55342039 | None:intergenic | 45.0% | |
| AGAAAGAATCGGGACAATCC+TGG | - | chr4_1:55342274-55342293 | None:intergenic | 45.0% | |
| ! | CCAAGTCTTATCCCACTAAG+TGG | - | chr4_1:55342397-55342416 | None:intergenic | 45.0% |
| CCACTTAGTGGGATAAGACT+TGG | + | chr4_1:55342394-55342413 | Msa0557030:intron | 45.0% | |
| CTTAGTGGGATAAGACTTGG+TGG | + | chr4_1:55342397-55342416 | Msa0557030:intron | 45.0% | |
| GAAGATATACGAGGCCTTTC+AGG | - | chr4_1:55342709-55342728 | None:intergenic | 45.0% | |
| !! | CCCTGTGTTTTTAAGCCTGT+TGG | + | chr4_1:55342902-55342921 | Msa0557030:three_prime_UTR | 45.0% |
| GCCAACAGGCTTAAAAACAC+AGG | - | chr4_1:55342906-55342925 | None:intergenic | 45.0% | |
| TGAGACAAACACCGACACAT+CGG | + | chr4_1:55343086-55343105 | Msa0557030:three_prime_UTR | 45.0% | |
| AACATTCGACACCGATGTGT+CGG | - | chr4_1:55343100-55343119 | None:intergenic | 45.0% | |
| TTTCTGTGTCAGACAGACGT+TGG | - | chr4_1:55343190-55343209 | None:intergenic | 45.0% | |
| TGATGCTATCTTACACCGGG+TGG | - | chr4_1:55339698-55339717 | None:intergenic | 50.0% | |
| ACAACATCCTGGGTACCATC+AGG | - | chr4_1:55340573-55340592 | None:intergenic | 50.0% | |
| AGCTGTTAAGAGCGAGACCT+AGG | + | chr4_1:55340764-55340783 | Msa0557030:intron | 50.0% | |
| AAGAGCGAGACCTAGGAAGA+TGG | + | chr4_1:55340771-55340790 | Msa0557030:CDS | 50.0% | |
| AGAGCGAGACCTAGGAAGAT+GGG | + | chr4_1:55340772-55340791 | Msa0557030:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4_1:55340895-55340914 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4_1:55340892-55340911 | Msa0557030:intron | 50.0% | |
| CATGGCATGAAGCATGCATC+TGG | + | chr4_1:55340964-55340983 | Msa0557030:CDS | 50.0% | |
| ! | GTTAAAGGTGGTGGTGTGCA+TGG | + | chr4_1:55341308-55341327 | Msa0557030:CDS | 50.0% |
| ! | CCTGTCAAATCTGAGACACC+AGG | - | chr4_1:55341398-55341417 | None:intergenic | 50.0% |
| CCTGGTGTCTCAGATTTGAC+AGG | + | chr4_1:55341395-55341414 | Msa0557030:CDS | 50.0% | |
| ACTTTACAGATGCCTGCTGG+TGG | + | chr4_1:55341889-55341908 | Msa0557030:intron | 50.0% | |
| CAACTGAAGCCACGGGATTA+GGG | - | chr4_1:55341946-55341965 | None:intergenic | 50.0% | |
| TCAACTGAAGCCACGGGATT+AGG | - | chr4_1:55341947-55341966 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4_1:55342391-55342410 | None:intergenic | 50.0% | |
| CCTGTACACACGTGAAACTG+AGG | - | chr4_1:55342619-55342638 | None:intergenic | 50.0% | |
| CCTCAGTTTCACGTGTGTAC+AGG | + | chr4_1:55342616-55342635 | Msa0557030:intron | 50.0% | |
| !! | CAGACATCGGTTTCGCGTTC+TGG | + | chr4_1:55339464-55339483 | Msa0557030:five_prime_UTR | 55.0% |
| ! | GGGAGGAGTTAAGTTGTGGC+AGG | - | chr4_1:55341229-55341248 | None:intergenic | 55.0% |
| ! | AAGGTGGTGGTGTGCATGGA+TGG | + | chr4_1:55341312-55341331 | Msa0557030:CDS | 55.0% |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr4_1:55342383-55342402 | Msa0557030:intron | 55.0% | |
| ACTTCAGTTCCAGCGGCAGC+AGG | - | chr4_1:55339559-55339578 | None:intergenic | 60.0% | |
| GTGGACGATGGGAGTCCTGA+TGG | + | chr4_1:55340555-55340574 | Msa0557030:CDS | 60.0% | |
| TGGGAGTCCTGATGGTACCC+AGG | + | chr4_1:55340563-55340582 | Msa0557030:CDS | 60.0% | |
| CTGTAGCCGACCCCACTTAG+TGG | + | chr4_1:55342382-55342401 | Msa0557030:intron | 60.0% | |
| TCGGCAGATCCTGCTGCCGC+TGG | + | chr4_1:55339547-55339566 | Msa0557030:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 55339447 | 55343366 | 55339447 | ID=Msa0557030;Name=Msa0557030 |
| chr4_1 | mRNA | 55339447 | 55343366 | 55339447 | ID=Msa0557030-mRNA-1;Parent=Msa0557030;Name=Msa0557030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=179|1|1|1|0.87|0.77|9|624|243 |
| chr4_1 | exon | 55339447 | 55339619 | 55339447 | ID=Msa0557030-mRNA-1:exon:16495;Parent=Msa0557030-mRNA-1 |
| chr4_1 | exon | 55340118 | 55340233 | 55340118 | ID=Msa0557030-mRNA-1:exon:16496;Parent=Msa0557030-mRNA-1 |
| chr4_1 | exon | 55340530 | 55340629 | 55340530 | ID=Msa0557030-mRNA-1:exon:16497;Parent=Msa0557030-mRNA-1 |
| chr4_1 | exon | 55340766 | 55340799 | 55340766 | ID=Msa0557030-mRNA-1:exon:16498;Parent=Msa0557030-mRNA-1 |
| chr4_1 | exon | 55340950 | 55341026 | 55340950 | ID=Msa0557030-mRNA-1:exon:16499;Parent=Msa0557030-mRNA-1 |
| chr4_1 | exon | 55341158 | 55341183 | 55341158 | ID=Msa0557030-mRNA-1:exon:16500;Parent=Msa0557030-mRNA-1 |
| chr4_1 | exon | 55341262 | 55341426 | 55341262 | ID=Msa0557030-mRNA-1:exon:16501;Parent=Msa0557030-mRNA-1 |
| chr4_1 | exon | 55341528 | 55341642 | 55341528 | ID=Msa0557030-mRNA-1:exon:16502;Parent=Msa0557030-mRNA-1 |
| chr4_1 | exon | 55342638 | 55343366 | 55342638 | ID=Msa0557030-mRNA-1:exon:16503;Parent=Msa0557030-mRNA-1 |
| chr4_1 | five_prime_UTR | 55339447 | 55339619 | 55339447 | ID=Msa0557030-mRNA-1:five_prime_utr;Parent=Msa0557030-mRNA-1 |
| chr4_1 | five_prime_UTR | 55340118 | 55340123 | 55340118 | ID=Msa0557030-mRNA-1:five_prime_utr;Parent=Msa0557030-mRNA-1 |
| chr4_1 | CDS | 55340124 | 55340233 | 55340124 | ID=Msa0557030-mRNA-1:cds;Parent=Msa0557030-mRNA-1 |
| chr4_1 | CDS | 55340530 | 55340629 | 55340530 | ID=Msa0557030-mRNA-1:cds;Parent=Msa0557030-mRNA-1 |
| chr4_1 | CDS | 55340766 | 55340799 | 55340766 | ID=Msa0557030-mRNA-1:cds;Parent=Msa0557030-mRNA-1 |
| chr4_1 | CDS | 55340950 | 55341026 | 55340950 | ID=Msa0557030-mRNA-1:cds;Parent=Msa0557030-mRNA-1 |
| chr4_1 | CDS | 55341158 | 55341183 | 55341158 | ID=Msa0557030-mRNA-1:cds;Parent=Msa0557030-mRNA-1 |
| chr4_1 | CDS | 55341262 | 55341426 | 55341262 | ID=Msa0557030-mRNA-1:cds;Parent=Msa0557030-mRNA-1 |
| chr4_1 | CDS | 55341528 | 55341642 | 55341528 | ID=Msa0557030-mRNA-1:cds;Parent=Msa0557030-mRNA-1 |
| chr4_1 | CDS | 55342638 | 55342742 | 55342638 | ID=Msa0557030-mRNA-1:cds;Parent=Msa0557030-mRNA-1 |
| chr4_1 | three_prime_UTR | 55342743 | 55343366 | 55342743 | ID=Msa0557030-mRNA-1:three_prime_utr;Parent=Msa0557030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
