Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665280 | AES86588.1 | 80.808 | 198 | 29 | 3 | 7 | 198 | 80 | 274 | 6.84e-100 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665280 | G7JGZ5 | 80.808 | 198 | 29 | 3 | 7 | 198 | 80 | 274 | 3.27e-100 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010500 | Msa0665280 | 0.801940 | 7.103124e-49 | -8.615850e-47 |
| Msa0020390 | Msa0665280 | 0.845170 | 4.800441e-59 | -8.615850e-47 |
| Msa0024400 | Msa0665280 | 0.828294 | 9.736313e-55 | -8.615850e-47 |
| Msa0027890 | Msa0665280 | 0.821425 | 4.065527e-53 | -8.615850e-47 |
| Msa0038870 | Msa0665280 | 0.814623 | 1.402008e-51 | -8.615850e-47 |
| Msa0072420 | Msa0665280 | 0.808581 | 2.886253e-50 | -8.615850e-47 |
| Msa0086420 | Msa0665280 | 0.809250 | 2.076068e-50 | -8.615850e-47 |
| Msa0093010 | Msa0665280 | 0.820054 | 8.400350e-53 | -8.615850e-47 |
| Msa0106710 | Msa0665280 | 0.802644 | 5.086566e-49 | -8.615850e-47 |
| Msa0604290 | Msa0665280 | 0.834446 | 2.984006e-56 | -8.615850e-47 |
| Msa0628420 | Msa0665280 | 0.810366 | 1.194596e-50 | -8.615850e-47 |
| Msa0665280 | Msa0677530 | 0.825419 | 4.735317e-54 | -8.615850e-47 |
| Msa0665280 | Msa0689320 | 0.815877 | 7.378707e-52 | -8.615850e-47 |
| Msa0665280 | Msa0693210 | 0.803981 | 2.689629e-49 | -8.615850e-47 |
| Msa0665280 | Msa0741440 | 0.817896 | 2.599059e-52 | -8.615850e-47 |
| Msa0665280 | Msa0746210 | 0.801808 | 7.560195e-49 | -8.615850e-47 |
| Msa0665280 | Msa0769970 | 0.810214 | 1.288529e-50 | -8.615850e-47 |
| Msa0665280 | Msa0786750 | 0.802950 | 4.397771e-49 | -8.615850e-47 |
| Msa0665280 | Msa0800370 | 0.818838 | 1.590119e-52 | -8.615850e-47 |
| Msa0665280 | Msa0822500 | 0.840209 | 9.980262e-58 | -8.615850e-47 |
| Msa0665280 | Msa0828590 | 0.807932 | 3.970508e-50 | -8.615850e-47 |
| Msa0665280 | Msa0829220 | 0.825787 | 3.874757e-54 | -8.615850e-47 |
| Msa0665280 | Msa0878220 | 0.825085 | 5.681594e-54 | -8.615850e-47 |
| Msa0665280 | Msa0933380 | 0.827955 | 1.175564e-54 | -8.615850e-47 |
| Msa0665280 | Msa0936480 | 0.800839 | 1.194007e-48 | -8.615850e-47 |
| Msa0665280 | Msa0944020 | 0.818755 | 1.660763e-52 | -8.615850e-47 |
| Msa0665280 | Msa0944200 | 0.804060 | 2.589366e-49 | -8.615850e-47 |
| Msa0665280 | Msa0958000 | 0.848701 | 5.181228e-60 | -8.615850e-47 |
| Msa0665280 | Msa0971160 | 0.817306 | 3.531681e-52 | -8.615850e-47 |
| Msa0665280 | Msa0974950 | 0.817200 | 3.730620e-52 | -8.615850e-47 |
| Msa0665280 | Msa0994370 | 0.806532 | 7.859606e-50 | -8.615850e-47 |
| Msa0665280 | Msa1037520 | 0.836597 | 8.525779e-57 | -8.615850e-47 |
| Msa0665280 | Msa1072900 | 0.804690 | 1.914172e-49 | -8.615850e-47 |
| Msa0665280 | Msa1130400 | 0.800681 | 1.285932e-48 | -8.615850e-47 |
| Msa0665280 | Msa1131490 | 0.816327 | 5.855187e-52 | -8.615850e-47 |
| Msa0665280 | Msa1158640 | -0.803528 | 3.338612e-49 | -8.615850e-47 |
| Msa0665280 | Msa1173340 | 0.800080 | 1.704356e-48 | -8.615850e-47 |
| Msa0665280 | Msa1175200 | 0.815641 | 8.332251e-52 | -8.615850e-47 |
| Msa0665280 | Msa1178580 | 0.834757 | 2.492327e-56 | -8.615850e-47 |
| Msa0665280 | Msa1179630 | 0.811578 | 6.528366e-51 | -8.615850e-47 |
| Msa0665280 | Msa1184230 | 0.807278 | 5.465510e-50 | -8.615850e-47 |
| Msa0665280 | Msa1233850 | 0.820134 | 8.050886e-53 | -8.615850e-47 |
| Msa0665280 | Msa1240970 | 0.801550 | 8.540880e-49 | -8.615850e-47 |
| Msa0665280 | Msa1271130 | 0.852709 | 3.863653e-61 | -8.615850e-47 |
| Msa0665280 | Msa1276150 | 0.837713 | 4.419613e-57 | -8.615850e-47 |
| Msa0665280 | Msa1304940 | 0.805832 | 1.103408e-49 | -8.615850e-47 |
| Msa0665280 | Msa1307180 | 0.804144 | 2.486788e-49 | -8.615850e-47 |
| Msa0665280 | Msa1316360 | 0.809108 | 2.227101e-50 | -8.615850e-47 |
| Msa0665280 | Msa1327640 | 0.819332 | 1.227736e-52 | -8.615850e-47 |
| Msa0665280 | Msa1336560 | 0.815519 | 8.870864e-52 | -8.615850e-47 |
| Msa0665280 | Msa1346840 | 0.810054 | 1.394971e-50 | -8.615850e-47 |
| Msa0665280 | Msa1370590 | 0.800772 | 1.232296e-48 | -8.615850e-47 |
| Msa0665280 | Msa1384100 | 0.801862 | 7.369064e-49 | -8.615850e-47 |
| Msa0665280 | Msa1411250 | 0.805360 | 1.386260e-49 | -8.615850e-47 |
| Msa0665280 | Msa1411950 | 0.803124 | 4.048519e-49 | -8.615850e-47 |
| Msa0665280 | Msa1414820 | 0.820699 | 5.975973e-53 | -8.615850e-47 |
| Msa0665280 | Msa1419690 | 0.826165 | 3.151206e-54 | -8.615850e-47 |
| Msa0665280 | Msa1434740 | 0.803890 | 2.809250e-49 | -8.615850e-47 |
| Msa0665280 | Msa1444120 | 0.801642 | 8.178040e-49 | -8.615850e-47 |
| Msa0665280 | Msa1446080 | 0.803333 | 3.664551e-49 | -8.615850e-47 |
| Msa0665280 | Msa1452710 | 0.802290 | 6.016727e-49 | -8.615850e-47 |
| Msa0665280 | Msa1457620 | 0.804055 | 2.595621e-49 | -8.615850e-47 |
| Msa0665280 | Msa1458290 | 0.841866 | 3.663377e-58 | -8.615850e-47 |
| Msa0665280 | Msa1462290 | 0.801699 | 7.962003e-49 | -8.615850e-47 |
| Msa0120880 | Msa0665280 | 0.800710 | 1.268402e-48 | -8.615850e-47 |
| Msa0121870 | Msa0665280 | 0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0159420 | Msa0665280 | 0.825810 | 3.827053e-54 | -8.615850e-47 |
| Msa0159440 | Msa0665280 | 0.817782 | 2.758621e-52 | -8.615850e-47 |
| Msa0163510 | Msa0665280 | 0.831614 | 1.510362e-55 | -8.615850e-47 |
| Msa0167980 | Msa0665280 | 0.858064 | 1.064341e-62 | -8.615850e-47 |
| Msa0183850 | Msa0665280 | 0.800648 | 1.305862e-48 | -8.615850e-47 |
| Msa0189530 | Msa0665280 | 0.806383 | 8.447976e-50 | -8.615850e-47 |
| Msa0190590 | Msa0665280 | 0.835006 | 2.156777e-56 | -8.615850e-47 |
| Msa0202490 | Msa0665280 | 0.801085 | 1.063289e-48 | -8.615850e-47 |
| Msa0204960 | Msa0665280 | 0.847938 | 8.422585e-60 | -8.615850e-47 |
| Msa0206690 | Msa0665280 | 0.806034 | 1.000827e-49 | -8.615850e-47 |
| Msa0214550 | Msa0665280 | 0.821963 | 3.052220e-53 | -8.615850e-47 |
| Msa0217670 | Msa0665280 | 0.860524 | 1.945349e-63 | -8.615850e-47 |
| Msa0223330 | Msa0665280 | 0.817891 | 2.605877e-52 | -8.615850e-47 |
| Msa0232790 | Msa0665280 | 0.804855 | 1.768171e-49 | -8.615850e-47 |
| Msa0382370 | Msa0665280 | 0.812773 | 3.581522e-51 | -8.615850e-47 |
| Msa0385500 | Msa0665280 | 0.869421 | 3.136527e-66 | -8.615850e-47 |
| Msa0389210 | Msa0665280 | 0.806952 | 6.407531e-50 | -8.615850e-47 |
| Msa0403770 | Msa0665280 | 0.831078 | 2.046754e-55 | -8.615850e-47 |
| Msa0426580 | Msa0665280 | 0.818792 | 1.629349e-52 | -8.615850e-47 |
| Msa0432160 | Msa0665280 | 0.809729 | 1.638674e-50 | -8.615850e-47 |
| Msa0432500 | Msa0665280 | 0.808356 | 3.224363e-50 | -8.615850e-47 |
| Msa0450400 | Msa0665280 | -0.827267 | 1.719530e-54 | -8.615850e-47 |
| Msa0460100 | Msa0665280 | 0.818225 | 2.190280e-52 | -8.615850e-47 |
| Msa0462600 | Msa0665280 | 0.801089 | 1.061399e-48 | -8.615850e-47 |
| Msa0466350 | Msa0665280 | 0.803560 | 3.288795e-49 | -8.615850e-47 |
| Msa0476680 | Msa0665280 | 0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa0244980 | Msa0665280 | 0.823820 | 1.127612e-53 | -8.615850e-47 |
| Msa0245580 | Msa0665280 | 0.803212 | 3.881985e-49 | -8.615850e-47 |
| Msa0249580 | Msa0665280 | 0.812669 | 3.774769e-51 | -8.615850e-47 |
| Msa0257490 | Msa0665280 | 0.873513 | 1.387623e-67 | -8.615850e-47 |
| Msa0269470 | Msa0665280 | 0.813736 | 2.200489e-51 | -8.615850e-47 |
| Msa0271350 | Msa0665280 | 0.803777 | 2.964896e-49 | -8.615850e-47 |
| Msa0272300 | Msa0665280 | 0.807139 | 5.847595e-50 | -8.615850e-47 |
| Msa0278570 | Msa0665280 | 0.812476 | 4.159612e-51 | -8.615850e-47 |
| Msa0281530 | Msa0665280 | 0.854616 | 1.093323e-61 | -8.615850e-47 |
| Msa0283420 | Msa0665280 | 0.810104 | 1.360541e-50 | -8.615850e-47 |
| Msa0284180 | Msa0665280 | 0.801693 | 7.980975e-49 | -8.615850e-47 |
| Msa0296790 | Msa0665280 | 0.865501 | 5.640066e-65 | -8.615850e-47 |
| Msa0296820 | Msa0665280 | 0.810938 | 8.986979e-51 | -8.615850e-47 |
| Msa0320590 | Msa0665280 | 0.814914 | 1.208606e-51 | -8.615850e-47 |
| Msa0343850 | Msa0665280 | 0.800542 | 1.372693e-48 | -8.615850e-47 |
| Msa0485710 | Msa0665280 | 0.819469 | 1.142381e-52 | -8.615850e-47 |
| Msa0491000 | Msa0665280 | 0.813678 | 2.266075e-51 | -8.615850e-47 |
| Msa0496450 | Msa0665280 | 0.816614 | 5.051383e-52 | -8.615850e-47 |
| Msa0515340 | Msa0665280 | 0.804608 | 1.990975e-49 | -8.615850e-47 |
| Msa0517590 | Msa0665280 | 0.811359 | 7.284656e-51 | -8.615850e-47 |
| Msa0521010 | Msa0665280 | 0.808036 | 3.772261e-50 | -8.615850e-47 |
| Msa0527540 | Msa0665280 | 0.813105 | 3.028316e-51 | -8.615850e-47 |
| Msa0527740 | Msa0665280 | 0.824287 | 8.759850e-54 | -8.615850e-47 |
| Msa0530560 | Msa0665280 | 0.823142 | 1.624096e-53 | -8.615850e-47 |
| Msa0531250 | Msa0665280 | 0.807075 | 6.033584e-50 | -8.615850e-47 |
| Msa0542290 | Msa0665280 | 0.839401 | 1.620241e-57 | -8.615850e-47 |
| Msa0542560 | Msa0665280 | 0.851505 | 8.495946e-61 | -8.615850e-47 |
| Msa0547160 | Msa0665280 | 0.800078 | 1.706367e-48 | -8.615850e-47 |
| Msa0557030 | Msa0665280 | 0.813089 | 3.053826e-51 | -8.615850e-47 |
| Msa0588090 | Msa0665280 | 0.801008 | 1.102443e-48 | -8.615850e-47 |
| Msa0588260 | Msa0665280 | 0.807537 | 4.815134e-50 | -8.615850e-47 |
| Msa0600080 | Msa0665280 | 0.812021 | 5.227504e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665280 | MtrunA17_Chr4g0003351 | 85.161 | 155 | 17 | 2 | 50 | 198 | 5 | 159 | 8.78e-91 | 263 |
| Msa0665280 | MtrunA17_Chr4g0063831 | 42.208 | 154 | 80 | 4 | 53 | 197 | 18 | 171 | 2.19e-33 | 117 |
| Msa0665280 | MtrunA17_Chr3g0137781 | 41.401 | 157 | 80 | 6 | 53 | 198 | 22 | 177 | 5.74e-26 | 98.6 |
| Msa0665280 | MtrunA17_Chr1g0149341 | 41.176 | 136 | 70 | 4 | 72 | 198 | 7 | 141 | 1.30e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665280 | AT5G25360.3 | 50.327 | 153 | 66 | 5 | 53 | 198 | 67 | 216 | 3.92e-43 | 144 |
| Msa0665280 | AT5G25360.2 | 50.000 | 146 | 64 | 4 | 59 | 198 | 27 | 169 | 1.73e-40 | 135 |
| Msa0665280 | AT5G25360.1 | 50.000 | 146 | 64 | 4 | 59 | 198 | 27 | 169 | 1.73e-40 | 135 |
| Msa0665280 | AT1G15350.1 | 45.000 | 160 | 66 | 3 | 53 | 198 | 3 | 154 | 1.45e-35 | 122 |
| Msa0665280 | AT1G15350.2 | 45.000 | 160 | 66 | 3 | 53 | 198 | 3 | 154 | 1.45e-35 | 122 |
| Msa0665280 | AT3G15770.1 | 44.444 | 162 | 71 | 7 | 52 | 197 | 3 | 161 | 1.82e-32 | 115 |
| Msa0665280 | AT3G15770.2 | 44.375 | 160 | 70 | 7 | 54 | 197 | 4 | 160 | 4.62e-32 | 114 |
| Msa0665280 | AT4G32342.1 | 44.304 | 158 | 66 | 8 | 51 | 197 | 14 | 160 | 2.62e-25 | 96.7 |
| Msa0665280 | AT4G32342.2 | 44.304 | 158 | 66 | 8 | 51 | 197 | 52 | 198 | 4.06e-25 | 97.4 |
| Msa0665280 | AT1G15350.6 | 46.552 | 116 | 40 | 3 | 97 | 198 | 1 | 108 | 2.89e-22 | 87.4 |
| Msa0665280 | AT1G15350.3 | 46.552 | 116 | 40 | 3 | 97 | 198 | 1 | 108 | 2.89e-22 | 87.4 |
| Msa0665280 | AT1G15350.5 | 46.552 | 116 | 40 | 3 | 97 | 198 | 1 | 108 | 2.89e-22 | 87.4 |
| Msa0665280 | AT1G15350.4 | 46.552 | 116 | 40 | 3 | 97 | 198 | 1 | 108 | 2.89e-22 | 87.4 |
| Msa0665280 | AT5G03440.2 | 42.667 | 75 | 34 | 4 | 131 | 198 | 26 | 98 | 9.00e-11 | 57.0 |
| Msa0665280 | AT5G03440.3 | 42.667 | 75 | 34 | 4 | 131 | 198 | 26 | 98 | 9.00e-11 | 57.0 |
| Msa0665280 | AT5G03440.1 | 42.667 | 75 | 34 | 4 | 131 | 198 | 26 | 98 | 9.00e-11 | 57.0 |
Find 65 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCAGATCTAATTTAATT+AGG | 0.167032 | 4_4:-4641539 | Msa0665280:CDS |
| CCAGTACATCAGAAGATTTC+TGG | 0.233221 | 4_4:-4640195 | Msa0665280:CDS |
| TGGCTACAGGTCTAATTCTA+TGG | 0.253969 | 4_4:-4639146 | Msa0665280:intron |
| TGGCAGATCTAATTTAATTA+GGG | 0.319342 | 4_4:-4641538 | Msa0665280:CDS |
| GACCACAAGCACGCATGATA+TGG | 0.336073 | 4_4:-4640173 | Msa0665280:CDS |
| AATTGTTGCGTTCGATTCTC+AGG | 0.337177 | 4_4:+4639087 | None:intergenic |
| GTTCTTGCTTCTGTAGGAAC+AGG | 0.345659 | 4_4:-4638234 | Msa0665280:three_prime_UTR |
| CAAGAACTACAATTATTTCA+TGG | 0.350778 | 4_4:+4638250 | None:intergenic |
| AGAGAGAAATTACACCCTTT+TGG | 0.352543 | 4_4:+4638163 | None:intergenic |
| GATGTTATTCACCTTAATTT+AGG | 0.359102 | 4_4:+4639057 | None:intergenic |
| CCAGAAATCTTCTGATGTAC+TGG | 0.367815 | 4_4:+4640195 | None:intergenic |
| AGAGGGGTTGTTGGAAGAAC+TGG | 0.385585 | 4_4:+4640078 | None:intergenic |
| TCTTGTGGACATTTGGGAAC+AGG | 0.394685 | 4_4:-4638330 | Msa0665280:CDS |
| AATTACGAGAGCCTAAATTA+AGG | 0.395920 | 4_4:-4639068 | Msa0665280:intron |
| TGATTGTCCTGGTTTCTCTC+TGG | 0.404723 | 4_4:-4638103 | Msa0665280:three_prime_UTR |
| CCCTCTGAATTTGTAAATCA+TGG | 0.405217 | 4_4:-4640061 | Msa0665280:intron |
| TTTCAGATACTACATGCATA+TGG | 0.409313 | 4_4:-4641497 | Msa0665280:CDS |
| ATTGTAGTTCTTGCTTCTGT+AGG | 0.442960 | 4_4:-4638240 | Msa0665280:three_prime_UTR |
| TACAAATTCAGAGGGGTTGT+TGG | 0.443407 | 4_4:+4640069 | None:intergenic |
| GGAATCAGACTCGGCAGCGT+TGG | 0.451348 | 4_4:-4639125 | Msa0665280:CDS |
| GAATCAGACTCGGCAGCGTT+GGG | 0.452328 | 4_4:-4639124 | Msa0665280:CDS |
| ACTGTGGAAGTACCAACAAC+AGG | 0.460725 | 4_4:-4640250 | Msa0665280:CDS |
| AGGGTGTAATTTCTCTCTGC+AGG | 0.470478 | 4_4:-4638158 | Msa0665280:three_prime_UTR |
| CTTTATTTAATTGATTGTCC+TGG | 0.478344 | 4_4:-4638114 | Msa0665280:three_prime_UTR |
| TTCAGATACTACATGCATAT+GGG | 0.483637 | 4_4:-4641496 | Msa0665280:CDS |
| CTGTATGACTGAGCCGTTGA+AGG | 0.494149 | 4_4:-4638302 | Msa0665280:exon |
| CTTCAACGGCTCAGTCATAC+AGG | 0.494492 | 4_4:+4638303 | None:intergenic |
| TTTCTCTTCAATTTCGATTG+TGG | 0.499925 | 4_4:-4641558 | Msa0665280:CDS |
| CAGAAATCTTCTGATGTACT+GGG | 0.501490 | 4_4:+4640196 | None:intergenic |
| AAGGTTGAGGATGTGCCGTT+TGG | 0.502583 | 4_4:-4638283 | Msa0665280:three_prime_UTR |
| TGATCTTTGTAGTTGTACAT+AGG | 0.505338 | 4_4:+4644292 | None:intergenic |
| CAGACTCGGCAGCGTTGGGT+TGG | 0.511397 | 4_4:-4639120 | Msa0665280:CDS |
| TTCTTGCTTCTGTAGGAACA+GGG | 0.517711 | 4_4:-4638233 | Msa0665280:three_prime_UTR |
| GTTGTGTTGGATGCTATAAA+AGG | 0.523538 | 4_4:-4640285 | Msa0665280:CDS |
| CCATGATTTACAAATTCAGA+GGG | 0.533140 | 4_4:+4640061 | None:intergenic |
| CACTTAAAGAAGATAACTTA+CGG | 0.534800 | 4_4:+4638877 | None:intergenic |
| AGGGTTGACAAAACAAGGTA+AGG | 0.550564 | 4_4:-4640230 | Msa0665280:CDS |
| ATGTACAACTACAAAGATCA+AGG | 0.551079 | 4_4:-4644289 | Msa0665280:intron |
| GACTGAGCCGTTGAAGGTTG+AGG | 0.552481 | 4_4:-4638296 | Msa0665280:exon |
| ACCATGATTTACAAATTCAG+AGG | 0.565784 | 4_4:+4640060 | None:intergenic |
| TAACAGAGCAGTGGTTGTGT+TGG | 0.566752 | 4_4:-4640298 | Msa0665280:intron |
| CATGGATCAAACAAACCAAA+CGG | 0.567448 | 4_4:+4638268 | None:intergenic |
| AACAGTGCTGTTCAATCACA+AGG | 0.569798 | 4_4:-4640148 | Msa0665280:CDS |
| GTCCATATCATGCGTGCTTG+TGG | 0.576778 | 4_4:+4640171 | None:intergenic |
| CTTGCTTCTGTAGGAACAGG+GGG | 0.583070 | 4_4:-4638231 | Msa0665280:three_prime_UTR |
| GGTTGTTGGAAGAACTGGCA+TGG | 0.586251 | 4_4:+4640083 | None:intergenic |
| TGTTGGATGCTATAAAAGGC+CGG | 0.591005 | 4_4:-4640281 | Msa0665280:CDS |
| GACAAAACAAGGTAAGGCAG+TGG | 0.597556 | 4_4:-4640224 | Msa0665280:CDS |
| TTCTCTCTGGTATCCACAAG+AGG | 0.601379 | 4_4:-4638090 | Msa0665280:three_prime_UTR |
| ACAACAGGGTTGACAAAACA+AGG | 0.612108 | 4_4:-4640235 | Msa0665280:CDS |
| TAATTCTATGGAATCAGACT+CGG | 0.616536 | 4_4:-4639134 | Msa0665280:CDS |
| ACTTCCACAGTAACTAGTGC+CGG | 0.617912 | 4_4:+4640262 | None:intergenic |
| GTGGACATTTGGGAACAGGA+TGG | 0.627320 | 4_4:-4638326 | Msa0665280:CDS |
| GGCACATCCTCAACCTTCAA+CGG | 0.627918 | 4_4:+4638289 | None:intergenic |
| AAGTCTAACTAATCAAGCTG+TGG | 0.637050 | 4_4:-4640110 | Msa0665280:CDS |
| TCAGATACTACATGCATATG+GGG | 0.639910 | 4_4:-4641495 | Msa0665280:intron |
| GTTGTTGGAAGAACTGGCAT+GGG | 0.640403 | 4_4:+4640084 | None:intergenic |
| CTGTGGAAGTACCAACAACA+GGG | 0.643787 | 4_4:-4640249 | Msa0665280:CDS |
| TGTGATTTGTAACAGAGCAG+TGG | 0.661472 | 4_4:-4640307 | Msa0665280:intron |
| TCTTGCTTCTGTAGGAACAG+GGG | 0.670252 | 4_4:-4638232 | Msa0665280:three_prime_UTR |
| AAGGCCGGCACTAGTTACTG+TGG | 0.673031 | 4_4:-4640266 | Msa0665280:CDS |
| CATGATTTACAAATTCAGAG+GGG | 0.706886 | 4_4:+4640062 | None:intergenic |
| GTGGATACCAGAGAGAAACC+AGG | 0.714044 | 4_4:+4638096 | None:intergenic |
| TTGCTTCTGTAGGAACAGGG+GGG | 0.734610 | 4_4:-4638230 | Msa0665280:three_prime_UTR |
| ACAGTGCTGTTCAATCACAA+GGG | 0.754566 | 4_4:-4640147 | Msa0665280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAATATAAAATTTAT+TGG | - | chr4_4:4640094-4640113 | Msa0665280:CDS | 0.0% |
| !!! | TCAAAAAACTTTATTATTTT+TGG | + | chr4_4:4639687-4639706 | None:intergenic | 10.0% |
| !!! | AAAAGTTTTTTGATTAAATT+TGG | - | chr4_4:4639998-4640017 | Msa0665280:intron | 10.0% |
| !!! | GAAATTATTAAAGTATTATT+TGG | - | chr4_4:4640461-4640480 | Msa0665280:intron | 10.0% |
| !!! | GATTTTTTTTTTTCAATTTT+AGG | - | chr4_4:4640749-4640768 | Msa0665280:intron | 10.0% |
| !!! | TTTATCTATGAAAATATTTT+TGG | - | chr4_4:4643198-4643217 | Msa0665280:intron | 10.0% |
| !!! | AAAACTTTTTTTTTTGAAAG+TGG | + | chr4_4:4639761-4639780 | None:intergenic | 15.0% |
| !! | GTAACTTAAAAAAAAGTTTA+TGG | + | chr4_4:4639791-4639810 | None:intergenic | 15.0% |
| !!! | AAAAACTTTTTTTTTGAAAG+CGG | + | chr4_4:4639944-4639963 | None:intergenic | 15.0% |
| !! | TACAAGAAAAAAAAAGTTTA+TGG | + | chr4_4:4639973-4639992 | None:intergenic | 15.0% |
| !! | TTAAATTACAAACAAAAAGA+AGG | - | chr4_4:4640030-4640049 | Msa0665280:intron | 15.0% |
| !! | TCATTTGAAAATTTCATTAT+TGG | - | chr4_4:4640396-4640415 | Msa0665280:intron | 15.0% |
| !!! | TTGCAATATTTTATTCTTTT+TGG | - | chr4_4:4640505-4640524 | Msa0665280:intron | 15.0% |
| !!! | TTAATTAGGGTTTTTTATTT+TGG | - | chr4_4:4640839-4640858 | Msa0665280:intron | 15.0% |
| !!! | TAATTAGGGTTTTTTATTTT+GGG | - | chr4_4:4640840-4640859 | Msa0665280:intron | 15.0% |
| !! | AAAGGAAATTAAATCAAAAA+AGG | + | chr4_4:4640948-4640967 | None:intergenic | 15.0% |
| !! | ATGATTATGAATCAATATAA+GGG | + | chr4_4:4640996-4641015 | None:intergenic | 15.0% |
| !! | AATGATTATGAATCAATATA+AGG | + | chr4_4:4640997-4641016 | None:intergenic | 15.0% |
| !! | TGATTCTGTAAAATTAATTA+TGG | + | chr4_4:4641418-4641437 | None:intergenic | 15.0% |
| !! | ATATACTTTAAATCCTAAAT+TGG | + | chr4_4:4643802-4643821 | None:intergenic | 15.0% |
| !! | TATTTCCTAAATAAAATGTT+AGG | - | chr4_4:4643834-4643853 | Msa0665280:intron | 15.0% |
| !! | ATTTCCTAAATAAAATGTTA+GGG | - | chr4_4:4643835-4643854 | Msa0665280:intron | 15.0% |
| !!! | ATAAGTTTTCATATACTTTA+GGG | - | chr4_4:4643867-4643886 | Msa0665280:intron | 15.0% |
| !!! | ATCATTCTTTGAAATTTTTC+AGG | - | chr4_4:4638681-4638700 | Msa0665280:intron | 20.0% |
| !! | GAAGAAAATTTAGTTGAAAT+TGG | + | chr4_4:4638881-4638900 | None:intergenic | 20.0% |
| !! | TTTAGGTAAGTCAATAAATA+AGG | + | chr4_4:4639058-4639077 | None:intergenic | 20.0% |
| !!! | CAAAACTTTTTTTTTGAAAG+TGG | + | chr4_4:4639713-4639732 | None:intergenic | 20.0% |
| !!! | TTATTAAAGTATTATTTGGG+TGG | - | chr4_4:4640465-4640484 | Msa0665280:intron | 20.0% |
| !! | AAGAATAAAATATTGCAAGT+TGG | + | chr4_4:4640503-4640522 | None:intergenic | 20.0% |
| !!! | AATTAGGGTTTTTTATTTTG+GGG | - | chr4_4:4640841-4640860 | Msa0665280:intron | 20.0% |
| !! | CTTTATTAAGTTACTATGAT+AGG | + | chr4_4:4640909-4640928 | None:intergenic | 20.0% |
| !!! | TAATTTCCTTTTTAGCTTTT+TGG | - | chr4_4:4640957-4640976 | Msa0665280:intron | 20.0% |
| !!! | AATTTCCTTTTTAGCTTTTT+GGG | - | chr4_4:4640958-4640977 | Msa0665280:intron | 20.0% |
| !! | ATTAATTTACTGTGTATGTT+TGG | - | chr4_4:4641101-4641120 | Msa0665280:intron | 20.0% |
| !!! | AGCTAGAATTTTTTAGTTTT+TGG | - | chr4_4:4641296-4641315 | Msa0665280:intron | 20.0% |
| !! | TAGATTTACCAATAAACTTA+AGG | + | chr4_4:4641341-4641360 | None:intergenic | 20.0% |
| !!! | GGTAAACTTAAAATTGATTT+CGG | + | chr4_4:4641552-4641571 | None:intergenic | 20.0% |
| !! | AACATAATTGAATGAATGTT+TGG | + | chr4_4:4641606-4641625 | None:intergenic | 20.0% |
| !! | AACATTCATTCAATTATGTT+AGG | - | chr4_4:4641606-4641625 | Msa0665280:intron | 20.0% |
| !! | TGAACACATTATGTATTAAA+GGG | + | chr4_4:4642440-4642459 | None:intergenic | 20.0% |
| !! | ATGAACACATTATGTATTAA+AGG | + | chr4_4:4642441-4642460 | None:intergenic | 20.0% |
| !! | TAATACATAATGTGTTCATT+TGG | - | chr4_4:4642442-4642461 | Msa0665280:intron | 20.0% |
| !! | AATACATAATGTGTTCATTT+GGG | - | chr4_4:4642443-4642462 | Msa0665280:intron | 20.0% |
| !! | AAAATGCATTTAATTACGAT+GGG | - | chr4_4:4642606-4642625 | Msa0665280:intron | 20.0% |
| !!! | TATCAAATGATATCTTTTGA+AGG | - | chr4_4:4642930-4642949 | Msa0665280:intron | 20.0% |
| !! | AACTTAAAGATTACAAACAT+GGG | + | chr4_4:4643077-4643096 | None:intergenic | 20.0% |
| !! | AAACTTAAAGATTACAAACA+TGG | + | chr4_4:4643078-4643097 | None:intergenic | 20.0% |
| !! | TTAAGTTTCATGTAAATTGT+TGG | - | chr4_4:4643090-4643109 | Msa0665280:intron | 20.0% |
| !! | AATAAAAGCTTACAGAAATA+TGG | + | chr4_4:4643405-4643424 | None:intergenic | 20.0% |
| !!! | TTCTTTAAGTGATTTTAACT+TGG | - | chr4_4:4643499-4643518 | Msa0665280:intron | 20.0% |
| !! | GTGAAACTAAGTATTTAAAT+TGG | - | chr4_4:4643532-4643551 | Msa0665280:intron | 20.0% |
| !!! | GATAAGTTTTCATATACTTT+AGG | - | chr4_4:4643866-4643885 | Msa0665280:intron | 20.0% |
| !! | TAATAACTTAAGAGACTAAA+TGG | - | chr4_4:4643908-4643927 | Msa0665280:intron | 20.0% |
| !! | TTCAATCAAAATTGCATAAA+TGG | + | chr4_4:4643956-4643975 | None:intergenic | 20.0% |
| ! | GTAGTTGAGATTTATTTAAG+AGG | - | chr4_4:4638192-4638211 | Msa0665280:three_prime_UTR | 25.0% |
| ! | TTCATGTATGTTACATATAG+AGG | - | chr4_4:4638368-4638387 | Msa0665280:intron | 25.0% |
| ! | AATACTGCAGAATCTTTAAA+TGG | + | chr4_4:4638438-4638457 | None:intergenic | 25.0% |
| ! | TATAATGGTATTATCCTTTC+TGG | - | chr4_4:4638493-4638512 | Msa0665280:intron | 25.0% |
| ! | GACTTACCTAAATTTATCTA+CGG | - | chr4_4:4639066-4639085 | Msa0665280:intron | 25.0% |
| ! | GTATATCCGTAGATAAATTT+AGG | + | chr4_4:4639075-4639094 | None:intergenic | 25.0% |
| ! | TTCTTTGTCATAAGCTATTT+AGG | + | chr4_4:4639152-4639171 | None:intergenic | 25.0% |
| !! | TGACAGAATTGATTTATGTT+TGG | - | chr4_4:4639330-4639349 | Msa0665280:intron | 25.0% |
| ! | TAAACAAACTGAATGTTGTT+TGG | - | chr4_4:4639374-4639393 | Msa0665280:intron | 25.0% |
| ! | AAAAGAAGGAGAATTGATAA+AGG | - | chr4_4:4640044-4640063 | Msa0665280:intron | 25.0% |
| ! | GAATTGATAAAGGACAATAA+AGG | - | chr4_4:4640054-4640073 | Msa0665280:intron | 25.0% |
| ! | GGACAATAAAGGAAAATAAT+AGG | - | chr4_4:4640065-4640084 | Msa0665280:CDS | 25.0% |
| !! | TTCTAGAAAAGCTAGAAATT+AGG | - | chr4_4:4640125-4640144 | Msa0665280:CDS | 25.0% |
| !! | AAAATCCAGTTTTTCACTTT+TGG | - | chr4_4:4640219-4640238 | Msa0665280:CDS | 25.0% |
| !!! | AAATCCAGTTTTTCACTTTT+GGG | - | chr4_4:4640220-4640239 | Msa0665280:CDS | 25.0% |
| !!! | CTCTAAGTTATTTCTTCAAA+AGG | - | chr4_4:4640359-4640378 | Msa0665280:intron | 25.0% |
| ! | TGGCAGATCTAATTTAATTA+GGG | - | chr4_4:4640826-4640845 | Msa0665280:intron | 25.0% |
| !!! | ATTAGGGTTTTTTATTTTGG+GGG | - | chr4_4:4640842-4640861 | Msa0665280:intron | 25.0% |
| !! | TTGAGCTTAAAAATCACTTT+TGG | - | chr4_4:4641158-4641177 | Msa0665280:intron | 25.0% |
| !!! | CATATGTTTGGTTTCAATTT+TGG | - | chr4_4:4641210-4641229 | Msa0665280:intron | 25.0% |
| !!! | GATTTTAGCCTTAAGTTTAT+TGG | - | chr4_4:4641330-4641349 | Msa0665280:intron | 25.0% |
| !! | AAATTGATTTCGGTATGTTT+GGG | + | chr4_4:4641542-4641561 | None:intergenic | 25.0% |
| !! | AAAATTGATTTCGGTATGTT+TGG | + | chr4_4:4641543-4641562 | None:intergenic | 25.0% |
| ! | ACGTGATTATAATTATGATG+TGG | - | chr4_4:4642017-4642036 | Msa0665280:intron | 25.0% |
| ! | ATACATAATGTGTTCATTTG+GGG | - | chr4_4:4642444-4642463 | Msa0665280:intron | 25.0% |
| ! | TGTAAACGATGATAACATTA+AGG | - | chr4_4:4642477-4642496 | Msa0665280:intron | 25.0% |
| ! | GAAAATGCATTTAATTACGA+TGG | - | chr4_4:4642605-4642624 | Msa0665280:intron | 25.0% |
| !!! | AGTCAGTATGCATTTATTTT+GGG | + | chr4_4:4642681-4642700 | None:intergenic | 25.0% |
| !! | AAGTCAGTATGCATTTATTT+TGG | + | chr4_4:4642682-4642701 | None:intergenic | 25.0% |
| !! | AGGCAGTTTTTGAATAAATA+GGG | + | chr4_4:4642717-4642736 | None:intergenic | 25.0% |
| !! | TAGGCAGTTTTTGAATAAAT+AGG | + | chr4_4:4642718-4642737 | None:intergenic | 25.0% |
| ! | ATGACTAATGGTCATTATAT+AGG | + | chr4_4:4643166-4643185 | None:intergenic | 25.0% |
| !!! | ATGAAAATATTTTTGGCTAC+AGG | - | chr4_4:4643205-4643224 | Msa0665280:intron | 25.0% |
| ! | GATGTTATTCACCTTAATTT+AGG | + | chr4_4:4643310-4643329 | None:intergenic | 25.0% |
| ! | TTCCAATAGAATTAATCCAA+CGG | + | chr4_4:4643337-4643356 | None:intergenic | 25.0% |
| !!! | TTCTGTAATTTTGTTTGTGT+TGG | - | chr4_4:4643366-4643385 | Msa0665280:intron | 25.0% |
| !!! | TCTGTAATTTTGTTTGTGTT+GGG | - | chr4_4:4643367-4643386 | Msa0665280:intron | 25.0% |
| ! | CACTTAAAGAAGATAACTTA+CGG | + | chr4_4:4643490-4643509 | None:intergenic | 25.0% |
| ! | TTCTTTAGACACTAAATTGA+TGG | + | chr4_4:4643770-4643789 | None:intergenic | 25.0% |
| !!! | TAGTCCCTAACATTTTATTT+AGG | + | chr4_4:4643842-4643861 | None:intergenic | 25.0% |
| !! | ATATACTTTAGGGACTAAAT+TGG | - | chr4_4:4643877-4643896 | Msa0665280:intron | 25.0% |
| !!! | TATTAATCAGTTTTGATAGG+AGG | + | chr4_4:4643999-4644018 | None:intergenic | 25.0% |
| ! | TCCTATCAAAACTGATTAAT+AGG | - | chr4_4:4643998-4644017 | Msa0665280:intron | 25.0% |
| !!! | TCCTATTAATCAGTTTTGAT+AGG | + | chr4_4:4644002-4644021 | None:intergenic | 25.0% |
| ! | CAAAACTGATTAATAGGAAA+TGG | - | chr4_4:4644004-4644023 | Msa0665280:intron | 25.0% |
| ! | CAAGAACTACAATTATTTCA+TGG | + | chr4_4:4644117-4644136 | None:intergenic | 25.0% |
| !! | ATCAATTTTTACATGCCAAA+AGG | - | chr4_4:4644186-4644205 | Msa0665280:intron | 25.0% |
| !! | TCAATTTTTACATGCCAAAA+GGG | - | chr4_4:4644187-4644206 | Msa0665280:intron | 25.0% |
| !! | CTTTATTTAATTGATTGTCC+TGG | - | chr4_4:4644250-4644269 | Msa0665280:intron | 25.0% |
| ATGTACAACTACAAAGATCA+AGG | - | chr4_4:4638075-4638094 | Msa0665280:three_prime_UTR | 30.0% | |
| ATTTGATTCAACCTCTTAAC+CGG | + | chr4_4:4638111-4638130 | None:intergenic | 30.0% | |
| ! | AGCATTTTCCTAAACAAACA+AGG | - | chr4_4:4638313-4638332 | Msa0665280:CDS | 30.0% |
| TGTAACATACATGAACACAT+GGG | + | chr4_4:4638363-4638382 | None:intergenic | 30.0% | |
| ATGTAACATACATGAACACA+TGG | + | chr4_4:4638364-4638383 | None:intergenic | 30.0% | |
| TTTAAATGGTACCTACTCTT+TGG | + | chr4_4:4638424-4638443 | None:intergenic | 30.0% | |
| CAAGCTTCAATGCATTATAA+TGG | - | chr4_4:4638478-4638497 | Msa0665280:intron | 30.0% | |
| AAGTAATTGATCACTTCTTC+TGG | + | chr4_4:4638608-4638627 | None:intergenic | 30.0% | |
| AACATGTGACCAATTGTTTA+AGG | - | chr4_4:4639022-4639041 | Msa0665280:intron | 30.0% | |
| CATTTGACTCCTTAAACAAT+TGG | + | chr4_4:4639034-4639053 | None:intergenic | 30.0% | |
| AATTAGGATTTGTAGCTTCA+AGG | - | chr4_4:4640141-4640160 | Msa0665280:CDS | 30.0% | |
| !! | CTTCAAGGATAATTGCTTTT+GGG | - | chr4_4:4640156-4640175 | Msa0665280:CDS | 30.0% |
| !! | TTCAAGGATAATTGCTTTTG+GGG | - | chr4_4:4640157-4640176 | Msa0665280:CDS | 30.0% |
| ! | GTGAAAAACTGGATTTTCAA+TGG | + | chr4_4:4640216-4640235 | None:intergenic | 30.0% |
| AAGCTTCAAAAGTGAAAAAC+TGG | + | chr4_4:4640227-4640246 | None:intergenic | 30.0% | |
| !! | AATCCAGTTTTTCACTTTTG+GGG | - | chr4_4:4640221-4640240 | Msa0665280:CDS | 30.0% |
| TTTAGATGTGAAGATTGTGT+CGG | + | chr4_4:4640665-4640684 | None:intergenic | 30.0% | |
| ACACAATCTTCACATCTAAA+AGG | - | chr4_4:4640665-4640684 | Msa0665280:intron | 30.0% | |
| ! | AGAGAGAAAGTGCATAAAAA+AGG | + | chr4_4:4640693-4640712 | None:intergenic | 30.0% |
| !!! | TTTTAGGATTGCTTTGCAAT+TGG | - | chr4_4:4640765-4640784 | Msa0665280:intron | 30.0% |
| TTTCTCTTCAATTTCGATTG+TGG | - | chr4_4:4640806-4640825 | Msa0665280:intron | 30.0% | |
| GTGGCAGATCTAATTTAATT+AGG | - | chr4_4:4640825-4640844 | Msa0665280:intron | 30.0% | |
| TTTCAGATACTACATGCATA+TGG | - | chr4_4:4640867-4640886 | Msa0665280:intron | 30.0% | |
| TTCAGATACTACATGCATAT+GGG | - | chr4_4:4640868-4640887 | Msa0665280:intron | 30.0% | |
| AGAAACCCAAAAAGCTAAAA+AGG | + | chr4_4:4640966-4640985 | None:intergenic | 30.0% | |
| ! | TACCTTTTTCTCTTGAAGAT+GGG | - | chr4_4:4641022-4641041 | Msa0665280:intron | 30.0% |
| ! | TAGGAAGTTGTGTATTTTTC+TGG | - | chr4_4:4641077-4641096 | Msa0665280:intron | 30.0% |
| ! | AGGAAGTTGTGTATTTTTCT+GGG | - | chr4_4:4641078-4641097 | Msa0665280:intron | 30.0% |
| TACAAGTCTTAGCATATGTT+TGG | - | chr4_4:4641198-4641217 | Msa0665280:intron | 30.0% | |
| !! | ATGTTTGGTTTCAATTTTGG+AGG | - | chr4_4:4641213-4641232 | Msa0665280:intron | 30.0% |
| !! | TGTTTGGTTTCAATTTTGGA+GGG | - | chr4_4:4641214-4641233 | Msa0665280:intron | 30.0% |
| TGCTAAAGAATCAATTCTCT+AGG | - | chr4_4:4641490-4641509 | Msa0665280:intron | 30.0% | |
| GCTAAAGAATCAATTCTCTA+GGG | - | chr4_4:4641491-4641510 | Msa0665280:intron | 30.0% | |
| ! | TAAGTTTACCGAATCACTTT+TGG | - | chr4_4:4641562-4641581 | Msa0665280:CDS | 30.0% |
| ! | AATGTTTGGATTGACCTTTT+AGG | + | chr4_4:4641592-4641611 | None:intergenic | 30.0% |
| TTTCTTATCCCAAAATCGAT+CGG | + | chr4_4:4641677-4641696 | None:intergenic | 30.0% | |
| GGATAAGAAATTGATGTGTT+TGG | - | chr4_4:4641687-4641706 | Msa0665280:intron | 30.0% | |
| ! | ATTGATGTGTTTGGTAGTAT+TGG | - | chr4_4:4641696-4641715 | Msa0665280:intron | 30.0% |
| AATATAGCATTATCGCATAG+CGG | + | chr4_4:4641759-4641778 | None:intergenic | 30.0% | |
| CATGATTTACAAATTCAGAG+GGG | + | chr4_4:4642305-4642324 | None:intergenic | 30.0% | |
| CCATGATTTACAAATTCAGA+GGG | + | chr4_4:4642306-4642325 | None:intergenic | 30.0% | |
| ACCATGATTTACAAATTCAG+AGG | + | chr4_4:4642307-4642326 | None:intergenic | 30.0% | |
| TACATAATGTGTTCATTTGG+GGG | - | chr4_4:4642445-4642464 | Msa0665280:intron | 30.0% | |
| ! | TATTCTGTGTTTCTATCAGA+TGG | + | chr4_4:4642577-4642596 | None:intergenic | 30.0% |
| ! | TTGGGGACTAAATATTGATT+GGG | + | chr4_4:4642663-4642682 | None:intergenic | 30.0% |
| TTTGGGGACTAAATATTGAT+TGG | + | chr4_4:4642664-4642683 | None:intergenic | 30.0% | |
| !!! | GTCAGTATGCATTTATTTTG+GGG | + | chr4_4:4642680-4642699 | None:intergenic | 30.0% |
| TAGGCAGCAGTTATTATATT+AGG | + | chr4_4:4642737-4642756 | None:intergenic | 30.0% | |
| ! | AGCATTTTTCTAATGTCGTT+AGG | + | chr4_4:4642778-4642797 | None:intergenic | 30.0% |
| ACACAATCATTTGTGAAATG+TGG | - | chr4_4:4642993-4643012 | Msa0665280:intron | 30.0% | |
| GATCAAATAGAAGATTCAGT+AGG | + | chr4_4:4643055-4643074 | None:intergenic | 30.0% | |
| AAGAGAACAAAATGCAAAAC+TGG | + | chr4_4:4643116-4643135 | None:intergenic | 30.0% | |
| CTTGAAAGTAAGATGACTAA+TGG | + | chr4_4:4643178-4643197 | None:intergenic | 30.0% | |
| TAATTCTATGGAATCAGACT+CGG | - | chr4_4:4643230-4643249 | Msa0665280:intron | 30.0% | |
| AATTACGAGAGCCTAAATTA+AGG | - | chr4_4:4643296-4643315 | Msa0665280:intron | 30.0% | |
| AATTATAAGATATCCGCATG+AGG | - | chr4_4:4643557-4643576 | Msa0665280:intron | 30.0% | |
| AAAGCCAAAAAAATTTGGCA+AGG | + | chr4_4:4643650-4643669 | None:intergenic | 30.0% | |
| ACTGCAAAGCCAAAAAAATT+TGG | + | chr4_4:4643655-4643674 | None:intergenic | 30.0% | |
| !!! | AATTTTTTTGGCTTTGCAGT+TGG | - | chr4_4:4643655-4643674 | Msa0665280:intron | 30.0% |
| ! | TAGATTTTCTTGTGGACATT+TGG | - | chr4_4:4644027-4644046 | Msa0665280:intron | 30.0% |
| ! | AGATTTTCTTGTGGACATTT+GGG | - | chr4_4:4644028-4644047 | Msa0665280:intron | 30.0% |
| AGATCAAGGTAATTGAGATC+CGG | - | chr4_4:4638089-4638108 | Msa0665280:three_prime_UTR | 35.0% | |
| !! | AGGATATGCCTTGTTTGTTT+AGG | + | chr4_4:4638324-4638343 | None:intergenic | 35.0% |
| TGGGATACATAGCATTTCAT+AGG | + | chr4_4:4638344-4638363 | None:intergenic | 35.0% | |
| ACAATTTGCAACCAAAGAGT+AGG | - | chr4_4:4638410-4638429 | Msa0665280:intron | 35.0% | |
| ! | TGTTTTCAATAGAGCCAGAA+AGG | + | chr4_4:4638510-4638529 | None:intergenic | 35.0% |
| GATGTAACTAAGTGTGTGTT+TGG | - | chr4_4:4639268-4639287 | Msa0665280:intron | 35.0% | |
| TTGGCAACAAACTCTAGTAT+TGG | + | chr4_4:4639668-4639687 | None:intergenic | 35.0% | |
| ! | GCTTCAAGGATAATTGCTTT+TGG | - | chr4_4:4640155-4640174 | Msa0665280:CDS | 35.0% |
| !! | TCAAGGATAATTGCTTTTGG+GGG | - | chr4_4:4640158-4640177 | Msa0665280:CDS | 35.0% |
| ! | ACTGGATTTTCAATGGTGTT+TGG | + | chr4_4:4640209-4640228 | None:intergenic | 35.0% |
| !! | TGAAGCTTTAGAATTGCTTC+TGG | - | chr4_4:4640239-4640258 | Msa0665280:CDS | 35.0% |
| ! | TTTAGAATTGCTTCTGGTCT+TGG | - | chr4_4:4640245-4640264 | Msa0665280:CDS | 35.0% |
| ! | TTAGAATTGCTTCTGGTCTT+GGG | - | chr4_4:4640246-4640265 | Msa0665280:CDS | 35.0% |
| !! | TCTAGAATTGTTTCTGGTCT+TGG | - | chr4_4:4640295-4640314 | Msa0665280:CDS | 35.0% |
| GAAATAACTTAGAGCCTGTT+TGG | + | chr4_4:4640353-4640372 | None:intergenic | 35.0% | |
| TTCATTTGAGAGAGAGAAAG+AGG | - | chr4_4:4640533-4640552 | Msa0665280:intron | 35.0% | |
| ! | GATAGGTTTTCTTTCTCTTC+AGG | + | chr4_4:4640629-4640648 | None:intergenic | 35.0% |
| AGAGAAAGAAAACCTATCGT+CGG | - | chr4_4:4640631-4640650 | Msa0665280:intron | 35.0% | |
| TCAGATACTACATGCATATG+GGG | - | chr4_4:4640869-4640888 | Msa0665280:intron | 35.0% | |
| ! | GTACCTTTTTCTCTTGAAGA+TGG | - | chr4_4:4641021-4641040 | Msa0665280:intron | 35.0% |
| AACCCATCTTCAAGAGAAAA+AGG | + | chr4_4:4641027-4641046 | None:intergenic | 35.0% | |
| TCATTCTGTTTCAGGAATGA+AGG | - | chr4_4:4641053-4641072 | Msa0665280:intron | 35.0% | |
| AGCATAAAGCTGTGTATGTT+TGG | + | chr4_4:4641474-4641493 | None:intergenic | 35.0% | |
| TAGGAGAACCAAAAGTGATT+CGG | + | chr4_4:4641573-4641592 | None:intergenic | 35.0% | |
| !!! | TCACTTTTGGTTCTCCTAAA+AGG | - | chr4_4:4641575-4641594 | Msa0665280:CDS | 35.0% |
| ATAATGCTATATTGCCGCTA+TGG | - | chr4_4:4641766-4641785 | Msa0665280:intron | 35.0% | |
| CATTCATCCAAATTCAGCTA+CGG | - | chr4_4:4641847-4641866 | Msa0665280:intron | 35.0% | |
| ATAGCGACTATTTGACAACA+CGG | - | chr4_4:4641879-4641898 | Msa0665280:intron | 35.0% | |
| CAACTGTAGCTGAATTTGAA+CGG | + | chr4_4:4641927-4641946 | None:intergenic | 35.0% | |
| ! | AACACTTGTGTGGATTATGA+TGG | - | chr4_4:4641973-4641992 | Msa0665280:intron | 35.0% |
| GTTGTGTTGGATGCTATAAA+AGG | - | chr4_4:4642079-4642098 | Msa0665280:intron | 35.0% | |
| CAGAAATCTTCTGATGTACT+GGG | + | chr4_4:4642171-4642190 | None:intergenic | 35.0% | |
| AAGTCTAACTAATCAAGCTG+TGG | - | chr4_4:4642254-4642273 | Msa0665280:intron | 35.0% | |
| CCCTCTGAATTTGTAAATCA+TGG | - | chr4_4:4642303-4642322 | Msa0665280:intron | 35.0% | |
| !! | ACTTCATTGCTTTTGTTGTG+CGG | - | chr4_4:4642329-4642348 | Msa0665280:intron | 35.0% |
| CCAAGACTCTCAAATTTCTT+GGG | + | chr4_4:4642634-4642653 | None:intergenic | 35.0% | |
| CCAAGAAATTTGAGAGTCTT+GGG | - | chr4_4:4642632-4642651 | Msa0665280:intron | 35.0% | |
| AAGATATATCGGATGCATGT+TGG | - | chr4_4:4642840-4642859 | Msa0665280:intron | 35.0% | |
| ! | GTTGGTGCTCATATATGAAA+TGG | - | chr4_4:4642858-4642877 | Msa0665280:intron | 35.0% |
| ATGAAATGGTTTGAGCAACA+TGG | - | chr4_4:4642872-4642891 | Msa0665280:intron | 35.0% | |
| ! | TTCTTCATGCACTTTCCTTT+TGG | - | chr4_4:4642967-4642986 | Msa0665280:intron | 35.0% |
| ! | TCTTCATGCACTTTCCTTTT+GGG | - | chr4_4:4642968-4642987 | Msa0665280:intron | 35.0% |
| AAATGATTGTGTAGCCCAAA+AGG | + | chr4_4:4642985-4643004 | None:intergenic | 35.0% | |
| ATAGAATTAATCCAACGGCA+AGG | + | chr4_4:4643332-4643351 | None:intergenic | 35.0% | |
| TGCCGTTGGATTAATTCTAT+TGG | - | chr4_4:4643332-4643351 | Msa0665280:intron | 35.0% | |
| ATTGTGTACCAAAGACATTG+TGG | - | chr4_4:4643445-4643464 | Msa0665280:intron | 35.0% | |
| !!! | AGTGCCTTGCCAAATTTTTT+TGG | - | chr4_4:4643643-4643662 | Msa0665280:intron | 35.0% |
| AGAATCACTCTCTCCAATTT+AGG | - | chr4_4:4643786-4643805 | Msa0665280:intron | 35.0% | |
| ! | GGAAATGGTAGATTTTCTTG+TGG | - | chr4_4:4644019-4644038 | Msa0665280:intron | 35.0% |
| CATGGATCAAACAAACCAAA+CGG | + | chr4_4:4644099-4644118 | None:intergenic | 35.0% | |
| ATTGTAGTTCTTGCTTCTGT+AGG | - | chr4_4:4644124-4644143 | Msa0665280:intron | 35.0% | |
| ! | AGAGAGAAATTACACCCTTT+TGG | + | chr4_4:4644204-4644223 | None:intergenic | 35.0% |
| ! | TTTTCAAAACTTGCCTCTTG+TGG | + | chr4_4:4644290-4644309 | None:intergenic | 35.0% |
| GTAATTGAGATCCGGTTAAG+AGG | - | chr4_4:4638097-4638116 | Msa0665280:three_prime_UTR | 40.0% | |
| TCATCACTTACGTACAGCTA+CGG | - | chr4_4:4638153-4638172 | Msa0665280:three_prime_UTR | 40.0% | |
| !! | TCACTTCTTCTGGTTCTTCT+TGG | + | chr4_4:4638598-4638617 | None:intergenic | 40.0% |
| TGGAATAAGCTGAACCAAAC+AGG | - | chr4_4:4640315-4640334 | Msa0665280:intron | 40.0% | |
| ! | TGAAGAGATGGGATTGCTTT+TGG | + | chr4_4:4640599-4640618 | None:intergenic | 40.0% |
| !! | TTTCTCTTGAAGATGGGTTG+TGG | - | chr4_4:4641028-4641047 | Msa0665280:intron | 40.0% |
| TTGTGGAGTCATTCTGTTTC+AGG | - | chr4_4:4641045-4641064 | Msa0665280:intron | 40.0% | |
| CTGTTTCAGGAATGAAGGAT+AGG | - | chr4_4:4641058-4641077 | Msa0665280:intron | 40.0% | |
| !! | AGCTTACACCGATCGATTTT+GGG | - | chr4_4:4641666-4641685 | Msa0665280:intron | 40.0% |
| !! | GTTTGGTAGTATTGGCAACA+CGG | - | chr4_4:4641704-4641723 | Msa0665280:intron | 40.0% |
| ATGTCAAATAGCAGCCATAG+CGG | + | chr4_4:4641783-4641802 | None:intergenic | 40.0% | |
| CACTAAACCGTAGCTGAATT+TGG | + | chr4_4:4641857-4641876 | None:intergenic | 40.0% | |
| CGTTCAAATTCAGCTACAGT+TGG | - | chr4_4:4641925-4641944 | Msa0665280:intron | 40.0% | |
| ! | TCCACACAAGTGTTGCTAAA+CGG | + | chr4_4:4641967-4641986 | None:intergenic | 40.0% |
| TGTTGGATGCTATAAAAGGC+CGG | - | chr4_4:4642083-4642102 | Msa0665280:intron | 40.0% | |
| ! | TGTTTTGTCAACCCTGTTGT+TGG | + | chr4_4:4642129-4642148 | None:intergenic | 40.0% |
| ACAACAGGGTTGACAAAACA+AGG | - | chr4_4:4642129-4642148 | Msa0665280:intron | 40.0% | |
| AGGGTTGACAAAACAAGGTA+AGG | - | chr4_4:4642134-4642153 | Msa0665280:intron | 40.0% | |
| CCAGAAATCTTCTGATGTAC+TGG | + | chr4_4:4642172-4642191 | None:intergenic | 40.0% | |
| CCAGTACATCAGAAGATTTC+TGG | - | chr4_4:4642169-4642188 | Msa0665280:intron | 40.0% | |
| ! | AACAGTGCTGTTCAATCACA+AGG | - | chr4_4:4642216-4642235 | Msa0665280:intron | 40.0% |
| ! | ACAGTGCTGTTCAATCACAA+GGG | - | chr4_4:4642217-4642236 | Msa0665280:intron | 40.0% |
| TACAAATTCAGAGGGGTTGT+TGG | + | chr4_4:4642298-4642317 | None:intergenic | 40.0% | |
| ATAATGTGTTCATTTGGGGG+TGG | - | chr4_4:4642448-4642467 | Msa0665280:intron | 40.0% | |
| TAATGTGTTCATTTGGGGGT+GGG | - | chr4_4:4642449-4642468 | Msa0665280:intron | 40.0% | |
| CCCAAGAAATTTGAGAGTCT+TGG | - | chr4_4:4642631-4642650 | Msa0665280:intron | 40.0% | |
| CCCAAGACTCTCAAATTTCT+TGG | + | chr4_4:4642635-4642654 | None:intergenic | 40.0% | |
| GCTGCAGTTATTGTGTGATT+AGG | + | chr4_4:4642756-4642775 | None:intergenic | 40.0% | |
| TAACATGTTCCCTTAGAGCA+CGG | - | chr4_4:4642812-4642831 | Msa0665280:intron | 40.0% | |
| ! | GTAGGCAAAAGCACATGAAT+AGG | + | chr4_4:4643037-4643056 | None:intergenic | 40.0% |
| TGGCTACAGGTCTAATTCTA+TGG | - | chr4_4:4643218-4643237 | Msa0665280:intron | 40.0% | |
| AATTGTTGCGTTCGATTCTC+AGG | + | chr4_4:4643280-4643299 | None:intergenic | 40.0% | |
| GTACCAAAGACATTGTGGTT+AGG | - | chr4_4:4643450-4643469 | Msa0665280:intron | 40.0% | |
| TTCTTGCTTCTGTAGGAACA+GGG | - | chr4_4:4644131-4644150 | Msa0665280:intron | 40.0% | |
| GAGCCCCAAAAGTGAAAAAC+TGG | + | chr4_4:4640277-4640296 | None:intergenic | 45.0% | |
| !! | TGGGGCTCTAGAATTGTTTC+TGG | - | chr4_4:4640289-4640308 | Msa0665280:CDS | 45.0% |
| CAGGTCTGATGTGAAGAGAT+GGG | + | chr4_4:4640610-4640629 | None:intergenic | 45.0% | |
| TCAGGTCTGATGTGAAGAGA+TGG | + | chr4_4:4640611-4640630 | None:intergenic | 45.0% | |
| TCGGTAATGAAACCGACGAT+AGG | + | chr4_4:4640646-4640665 | None:intergenic | 45.0% | |
| AGGGTCAAGAGTGATTCTAG+AGG | - | chr4_4:4641233-4641252 | Msa0665280:intron | 45.0% | |
| GCTGTGTATGTTTGGTACTG+TGG | + | chr4_4:4641466-4641485 | None:intergenic | 45.0% | |
| !! | CAGCTTACACCGATCGATTT+TGG | - | chr4_4:4641665-4641684 | Msa0665280:intron | 45.0% |
| ACACGGATCGTGGAAAATAG+TGG | - | chr4_4:4641721-4641740 | Msa0665280:intron | 45.0% | |
| ! | ACACAAGTGTTGCTAAACGG+TGG | + | chr4_4:4641964-4641983 | None:intergenic | 45.0% |
| ACCGTTTAGCAACACTTGTG+TGG | - | chr4_4:4641963-4641982 | Msa0665280:intron | 45.0% | |
| ACTTCCACAGTAACTAGTGC+CGG | + | chr4_4:4642105-4642124 | None:intergenic | 45.0% | |
| !! | ACTGTGGAAGTACCAACAAC+AGG | - | chr4_4:4642114-4642133 | Msa0665280:intron | 45.0% |
| !! | CTGTGGAAGTACCAACAACA+GGG | - | chr4_4:4642115-4642134 | Msa0665280:intron | 45.0% |
| GACAAAACAAGGTAAGGCAG+TGG | - | chr4_4:4642140-4642159 | Msa0665280:intron | 45.0% | |
| GTTGTTGGAAGAACTGGCAT+GGG | + | chr4_4:4642283-4642302 | None:intergenic | 45.0% | |
| ! | CAATAAGGGTGTGTTAGGGA+GGG | + | chr4_4:4642533-4642552 | None:intergenic | 45.0% |
| CTCCCTAACACACCCTTATT+GGG | - | chr4_4:4642532-4642551 | Msa0665280:intron | 45.0% | |
| TCCCTAACACACCCTTATTG+GGG | - | chr4_4:4642533-4642552 | Msa0665280:intron | 45.0% | |
| AACATGTTCCCTTAGAGCAC+GGG | - | chr4_4:4642813-4642832 | Msa0665280:intron | 45.0% | |
| GCACGGGTAGCAAGATATAT+CGG | - | chr4_4:4642829-4642848 | Msa0665280:intron | 45.0% | |
| GTGAATAACATCCTTGCCGT+TGG | - | chr4_4:4643318-4643337 | Msa0665280:intron | 45.0% | |
| CAGCCTAACCACAATGTCTT+TGG | + | chr4_4:4643456-4643475 | None:intergenic | 45.0% | |
| TAAAGCCTATCTGCCTCATG+CGG | + | chr4_4:4643573-4643592 | None:intergenic | 45.0% | |
| ! | AGTTGATGCTTACAGCGAGA+GGG | + | chr4_4:4643734-4643753 | None:intergenic | 45.0% |
| !! | AAGTTGATGCTTACAGCGAG+AGG | + | chr4_4:4643735-4643754 | None:intergenic | 45.0% |
| TCTTGTGGACATTTGGGAAC+AGG | - | chr4_4:4644034-4644053 | Msa0665280:intron | 45.0% | |
| GTTCTTGCTTCTGTAGGAAC+AGG | - | chr4_4:4644130-4644149 | Msa0665280:intron | 45.0% | |
| TCTTGCTTCTGTAGGAACAG+GGG | - | chr4_4:4644132-4644151 | Msa0665280:intron | 45.0% | |
| AGGGTGTAATTTCTCTCTGC+AGG | - | chr4_4:4644206-4644225 | Msa0665280:intron | 45.0% | |
| TGATTGTCCTGGTTTCTCTC+TGG | - | chr4_4:4644261-4644280 | Msa0665280:intron | 45.0% | |
| TTCTCTCTGGTATCCACAAG+AGG | - | chr4_4:4644274-4644293 | Msa0665280:intron | 45.0% | |
| !!! | AAATTATTAAAGTATTATTT+GGG | - | chr4_4:4640462-4640481 | Msa0665280:intron | 5.0% |
| !! | AGTATTGGCAACACGGATCG+TGG | - | chr4_4:4641711-4641730 | Msa0665280:intron | 50.0% |
| GACCACAAGCACGCATGATA+TGG | - | chr4_4:4642191-4642210 | Msa0665280:intron | 50.0% | |
| GTCCATATCATGCGTGCTTG+TGG | + | chr4_4:4642196-4642215 | None:intergenic | 50.0% | |
| GGTTGTTGGAAGAACTGGCA+TGG | + | chr4_4:4642284-4642303 | None:intergenic | 50.0% | |
| AGAGGGGTTGTTGGAAGAAC+TGG | + | chr4_4:4642289-4642308 | None:intergenic | 50.0% | |
| GGAGGTTTAGGAGAGGCTAA+TGG | + | chr4_4:4642512-4642531 | None:intergenic | 50.0% | |
| TGTGTTAGGGAGGGAGGTTT+AGG | + | chr4_4:4642524-4642543 | None:intergenic | 50.0% | |
| ! | CCAATAAGGGTGTGTTAGGG+AGG | + | chr4_4:4642534-4642553 | None:intergenic | 50.0% |
| CCTCCCTAACACACCCTTAT+TGG | - | chr4_4:4642531-4642550 | Msa0665280:intron | 50.0% | |
| ! | CCCCCAATAAGGGTGTGTTA+GGG | + | chr4_4:4642537-4642556 | None:intergenic | 50.0% |
| CCCTAACACACCCTTATTGG+GGG | - | chr4_4:4642534-4642553 | Msa0665280:intron | 50.0% | |
| CCTAACACACCCTTATTGGG+GGG | - | chr4_4:4642535-4642554 | Msa0665280:intron | 50.0% | |
| CTAACACACCCTTATTGGGG+GGG | - | chr4_4:4642536-4642555 | Msa0665280:intron | 50.0% | |
| TAACACACCCTTATTGGGGG+GGG | - | chr4_4:4642537-4642556 | Msa0665280:intron | 50.0% | |
| TCTTGCTACCCGTGCTCTAA+GGG | + | chr4_4:4642824-4642843 | None:intergenic | 50.0% | |
| ATCTTGCTACCCGTGCTCTA+AGG | + | chr4_4:4642825-4642844 | None:intergenic | 50.0% | |
| GATATCCGCATGAGGCAGAT+AGG | - | chr4_4:4643565-4643584 | Msa0665280:intron | 50.0% | |
| ATGCTTACAGCGAGAGGGAT+AGG | + | chr4_4:4643729-4643748 | None:intergenic | 50.0% | |
| GTGGACATTTGGGAACAGGA+TGG | - | chr4_4:4644038-4644057 | Msa0665280:intron | 50.0% | |
| CTTCAACGGCTCAGTCATAC+AGG | + | chr4_4:4644064-4644083 | None:intergenic | 50.0% | |
| CTGTATGACTGAGCCGTTGA+AGG | - | chr4_4:4644062-4644081 | Msa0665280:intron | 50.0% | |
| GGCACATCCTCAACCTTCAA+CGG | + | chr4_4:4644078-4644097 | None:intergenic | 50.0% | |
| ! | AAGGTTGAGGATGTGCCGTT+TGG | - | chr4_4:4644081-4644100 | Msa0665280:intron | 50.0% |
| CTTGCTTCTGTAGGAACAGG+GGG | - | chr4_4:4644133-4644152 | Msa0665280:intron | 50.0% | |
| TTGCTTCTGTAGGAACAGGG+GGG | - | chr4_4:4644134-4644153 | Msa0665280:intron | 50.0% | |
| GTGGATACCAGAGAGAAACC+AGG | + | chr4_4:4644271-4644290 | None:intergenic | 50.0% | |
| GGTTCAGTAGCGAGCCTGTT+TGG | + | chr4_4:4640332-4640351 | None:intergenic | 55.0% | |
| GGCTCGCTACTGAACCAAAC+AGG | - | chr4_4:4640336-4640355 | Msa0665280:intron | 55.0% | |
| AAGGCCGGCACTAGTTACTG+TGG | - | chr4_4:4642098-4642117 | Msa0665280:intron | 55.0% | |
| TAGGGAGGGAGGTTTAGGAG+AGG | + | chr4_4:4642519-4642538 | None:intergenic | 55.0% | |
| ! | TAAGGGTGTGTTAGGGAGGG+AGG | + | chr4_4:4642530-4642549 | None:intergenic | 55.0% |
| ! | CCCCCCAATAAGGGTGTGTT+AGG | + | chr4_4:4642538-4642557 | None:intergenic | 55.0% |
| AACACACCCTTATTGGGGGG+GGG | - | chr4_4:4642538-4642557 | Msa0665280:intron | 55.0% | |
| GAATCAGACTCGGCAGCGTT+GGG | - | chr4_4:4643240-4643259 | Msa0665280:intron | 55.0% | |
| AGAGGGATAGGCTGACGGAA+TGG | + | chr4_4:4643717-4643736 | None:intergenic | 55.0% | |
| GACTGAGCCGTTGAAGGTTG+AGG | - | chr4_4:4644068-4644087 | Msa0665280:intron | 55.0% | |
| TTCTGTAGGAACAGGGGGGA+AGG | - | chr4_4:4644138-4644157 | Msa0665280:intron | 55.0% | |
| TCTGTAGGAACAGGGGGGAA+GGG | - | chr4_4:4644139-4644158 | Msa0665280:intron | 55.0% | |
| ACACACCCTTATTGGGGGGG+GGG | - | chr4_4:4642539-4642558 | Msa0665280:intron | 60.0% | |
| GGAATCAGACTCGGCAGCGT+TGG | - | chr4_4:4643239-4643258 | Msa0665280:intron | 60.0% | |
| CAGCGAGAGGGATAGGCTGA+CGG | + | chr4_4:4643722-4643741 | None:intergenic | 60.0% | |
| CTGTAGGAACAGGGGGGAAG+GGG | - | chr4_4:4644140-4644159 | Msa0665280:intron | 60.0% | |
| CACACCCTTATTGGGGGGGG+GGG | - | chr4_4:4642540-4642559 | Msa0665280:intron | 65.0% | |
| ACACCCTTATTGGGGGGGGG+GGG | - | chr4_4:4642541-4642560 | Msa0665280:intron | 65.0% | |
| ! | CAGACTCGGCAGCGTTGGGT+TGG | - | chr4_4:4643244-4643263 | Msa0665280:intron | 65.0% |
| CACCCTTATTGGGGGGGGGG+GGG | - | chr4_4:4642542-4642561 | Msa0665280:intron | 70.0% | |
| ACCCTTATTGGGGGGGGGGG+GGG | - | chr4_4:4642543-4642562 | Msa0665280:intron | 70.0% | |
| CCCCCCCCCCCCCCCAATAA+GGG | + | chr4_4:4642547-4642566 | None:intergenic | 75.0% | |
| CCCTTATTGGGGGGGGGGGG+GGG | - | chr4_4:4642544-4642563 | Msa0665280:intron | 75.0% | |
| CCTTATTGGGGGGGGGGGGG+GGG | - | chr4_4:4642545-4642564 | Msa0665280:intron | 75.0% | |
| CTTATTGGGGGGGGGGGGGG+GGG | - | chr4_4:4642546-4642565 | Msa0665280:intron | 75.0% | |
| TTATTGGGGGGGGGGGGGGG+GGG | - | chr4_4:4642547-4642566 | Msa0665280:intron | 75.0% | |
| ! | CCCCCCCCCCCCCCCCAATA+AGG | + | chr4_4:4642548-4642567 | None:intergenic | 80.0% |
| ! | TATTGGGGGGGGGGGGGGGG+GGG | - | chr4_4:4642548-4642567 | Msa0665280:intron | 80.0% |
| ! | ATTGGGGGGGGGGGGGGGGG+GGG | - | chr4_4:4642549-4642568 | Msa0665280:intron | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr4_4:4642550-4642569 | Msa0665280:intron | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 4638075 | 4644311 | 4638075 | ID=Msa0665280;Name=Msa0665280 |
| chr4_4 | mRNA | 4638075 | 4644311 | 4638075 | ID=Msa0665280-mRNA-1;Parent=Msa0665280;Name=Msa0665280-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.16|0.57|0.57|0.16|0.28|7|238|198 |
| chr4_4 | exon | 4638075 | 4638366 | 4638075 | ID=Msa0665280-mRNA-1:exon:1566;Parent=Msa0665280-mRNA-1 |
| chr4_4 | exon | 4638866 | 4638914 | 4638866 | ID=Msa0665280-mRNA-1:exon:1565;Parent=Msa0665280-mRNA-1 |
| chr4_4 | exon | 4639069 | 4639159 | 4639069 | ID=Msa0665280-mRNA-1:exon:1564;Parent=Msa0665280-mRNA-1 |
| chr4_4 | exon | 4640062 | 4640314 | 4640062 | ID=Msa0665280-mRNA-1:exon:1563;Parent=Msa0665280-mRNA-1 |
| chr4_4 | exon | 4641407 | 4641414 | 4641407 | ID=Msa0665280-mRNA-1:exon:1562;Parent=Msa0665280-mRNA-1 |
| chr4_4 | exon | 4641496 | 4641615 | 4641496 | ID=Msa0665280-mRNA-1:exon:1561;Parent=Msa0665280-mRNA-1 |
| chr4_4 | exon | 4644290 | 4644311 | 4644290 | ID=Msa0665280-mRNA-1:exon:1560;Parent=Msa0665280-mRNA-1 |
| chr4_4 | CDS | 4644290 | 4644311 | 4644290 | ID=Msa0665280-mRNA-1:cds;Parent=Msa0665280-mRNA-1 |
| chr4_4 | CDS | 4641496 | 4641615 | 4641496 | ID=Msa0665280-mRNA-1:cds;Parent=Msa0665280-mRNA-1 |
| chr4_4 | CDS | 4641407 | 4641414 | 4641407 | ID=Msa0665280-mRNA-1:cds;Parent=Msa0665280-mRNA-1 |
| chr4_4 | CDS | 4640062 | 4640314 | 4640062 | ID=Msa0665280-mRNA-1:cds;Parent=Msa0665280-mRNA-1 |
| chr4_4 | CDS | 4639069 | 4639159 | 4639069 | ID=Msa0665280-mRNA-1:cds;Parent=Msa0665280-mRNA-1 |
| chr4_4 | CDS | 4638866 | 4638914 | 4638866 | ID=Msa0665280-mRNA-1:cds;Parent=Msa0665280-mRNA-1 |
| chr4_4 | CDS | 4638313 | 4638366 | 4638313 | ID=Msa0665280-mRNA-1:cds;Parent=Msa0665280-mRNA-1 |
| chr4_4 | three_prime_UTR | 4638075 | 4638312 | 4638075 | ID=Msa0665280-mRNA-1:three_prime_utr;Parent=Msa0665280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
