AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0261660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261660 MtrunA17_Chr2g0323981 98.153 379 6 1 1 379 1 378 0.0 773
Msa0261660 MtrunA17_Chr1g0171131 50.943 371 170 5 6 369 12 377 3.02e-132 384
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0261660 AT2G20860.2 80.800 375 66 2 2 376 1 369 0.0 591
Msa0261660 AT2G20860.3 80.800 375 66 2 2 376 1 369 0.0 591
Msa0261660 AT2G20860.1 80.800 375 66 2 2 376 1 369 0.0 591
Msa0261660 AT5G08415.1 58.725 298 121 2 73 369 89 385 6.25e-124 363

Find 129 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCATCCATTTCGGTTT+TGG 0.218112 2_2:+60202655 None:intergenic
GACCAACACTCTCCCATATT+AGG 0.242683 2_2:+60202544 None:intergenic
TCTCCATTGTCTTCACAATT+TGG 0.254997 2_2:+60199133 None:intergenic
ATCGATTCCTTCATCCATTT+CGG 0.312761 2_2:+60202649 None:intergenic
ACTGCTACTATTATGATTCT+TGG 0.317053 2_2:-60202499 Msa0261660:CDS
GCCACATTAGTGGGCTCATC+AGG 0.324211 2_2:+60200068 None:intergenic
AGAGGCGAAGTGCCCTAATA+TGG 0.325795 2_2:-60202557 Msa0261660:CDS
GTAGAGAAGGTTTCCAAATC+AGG 0.347575 2_2:-60199330 Msa0261660:CDS
AGCAATTGCATCGTGGGGTT+TGG 0.354978 2_2:-60200042 Msa0261660:CDS
GGCTCATCAGGGTCAGGTGG+TGG 0.361593 2_2:+60200080 None:intergenic
GTACGCGTTGTTCGATTTCA+AGG 0.375043 2_2:+60202711 None:intergenic
TCAAGGAAATGAAGTCTGAT+AGG 0.398886 2_2:+60202728 None:intergenic
TCATCAGGGTCAGGTGGTGG+AGG 0.400338 2_2:+60200083 None:intergenic
TGATACTGGCATATGGCGTT+TGG 0.402301 2_2:+60199056 None:intergenic
GGTGAGATTCTGTGGGAATT+CGG 0.406088 2_2:+60202786 None:intergenic
ACCAAGACTTCAATAATGTT+AGG 0.408729 2_2:-60199174 Msa0261660:CDS
TTTGAGAAGTATCAGACTAT+TGG 0.410051 2_2:-60199012 Msa0261660:CDS
ACCTAACATTATTGAAGTCT+TGG 0.413462 2_2:+60199173 None:intergenic
TGGATGAAGGAATCGATTCC+TGG 0.415772 2_2:-60202643 Msa0261660:CDS
ATGGAGAAGGTGAGAGCAGC+AGG 0.415946 2_2:-60199117 Msa0261660:CDS
TCAGCATTTCCTCGAAAGTC+GGG 0.417079 2_2:+60199357 None:intergenic
AAGGACATCTAATCCTGATT+TGG 0.417297 2_2:+60199317 None:intergenic
ATTGTCTTCACAATTTGGTC+AGG 0.418891 2_2:+60199138 None:intergenic
ATACTTGTACTCGAGGTTGC+AGG 0.421929 2_2:-60202474 Msa0261660:intron
ACCAACACTCTCCCATATTA+GGG 0.424555 2_2:+60202545 None:intergenic
ATCTTTGGATGTTCTAATGA+TGG 0.429607 2_2:-60199226 Msa0261660:CDS
TCCCGCAGGGGCATAATCCT+TGG 0.435729 2_2:+60199203 None:intergenic
ATCCGCTTCCAAAACCGAAA+TGG 0.438228 2_2:-60202663 Msa0261660:CDS
GGTGTAATATATTCTGATAC+TGG 0.448209 2_2:+60199042 None:intergenic
TGCAAGACGAGCTCGGAGTT+CGG 0.450209 2_2:+60202765 None:intergenic
CTTCAATAATGTTAGGTTGT+GGG 0.451604 2_2:-60199167 Msa0261660:CDS
TCAGACTATTGGCATGGAAA+TGG 0.455998 2_2:-60199001 Msa0261660:intron
GGATTTCGATATGTGGCATC+CGG 0.456753 2_2:-60198358 Msa0261660:CDS
AAATGACCGCTCCCTTGATC+AGG 0.466961 2_2:+60199981 None:intergenic
TATATTCTGATACTGGCATA+TGG 0.475977 2_2:+60199049 None:intergenic
TACTGGCATATGGCGTTTGG+AGG 0.478307 2_2:+60199059 None:intergenic
GGTGTTGATGTGATGACATT+TGG 0.481557 2_2:-60199096 Msa0261660:CDS
ACTTCAATAATGTTAGGTTG+TGG 0.481662 2_2:-60199168 Msa0261660:CDS
TTTGCAATGTTAAGACATCA+AGG 0.482840 2_2:-60200109 Msa0261660:CDS
TGGCATCCGGGCCCATGGTA+AGG 0.484495 2_2:-60198345 Msa0261660:CDS
TGTTGGTCTGGTGGTGAAAC+GGG 0.486925 2_2:-60202529 Msa0261660:CDS
GGTGGTTGTTGTTGTGGTGG+CGG 0.488053 2_2:+60202819 None:intergenic
GGCTGAAGCAATTGCATCGT+GGG 0.490274 2_2:-60200048 Msa0261660:CDS
TGAGGCGGTGGTTGTTGTTG+TGG 0.491104 2_2:+60202813 None:intergenic
CGTGATGATTTACCTGATCA+AGG 0.493451 2_2:-60199993 Msa0261660:CDS
GGTTGTTGTTGTGGTGGCGG+TGG 0.494438 2_2:+60202822 None:intergenic
CTGTGGGAATTCGGAGGATG+AGG 0.494788 2_2:+60202795 None:intergenic
TTCAATAATGTTAGGTTGTG+GGG 0.495715 2_2:-60199166 Msa0261660:CDS
AAATGAAGTCTGATAGGGAC+GGG 0.497026 2_2:+60202734 None:intergenic
AATCCATGATTGACTCAGAT+CGG 0.499421 2_2:-60198291 Msa0261660:CDS
GCAACAGTCCCCGACTTTCG+AGG 0.501770 2_2:-60199366 Msa0261660:intron
ATCCATGATTGACTCAGATC+GGG 0.502707 2_2:-60198290 Msa0261660:CDS
GGATGTTCTAATGATGGCCA+AGG 0.512226 2_2:-60199220 Msa0261660:CDS
CGGAGTTCGGTGAGATTCTG+TGG 0.518861 2_2:+60202778 None:intergenic
AATTGCTTCAGCCACATTAG+TGG 0.519729 2_2:+60200058 None:intergenic
AACTCCGAGCTCGTCTTGCA+AGG 0.520430 2_2:-60202762 Msa0261660:CDS
GCCAAGGATTATGCCCCTGC+GGG 0.523274 2_2:-60199204 Msa0261660:CDS
ATCGTGGGGTTTGGATTATG+TGG 0.523491 2_2:-60200033 Msa0261660:CDS
TCCAAAACCGAAATGGATGA+AGG 0.524845 2_2:-60202656 Msa0261660:CDS
AGCCCGATCTGAGTCAATCA+TGG 0.525147 2_2:+60198288 None:intergenic
GTCTTGGTGAGGGTTCCCGC+AGG 0.527483 2_2:+60199189 None:intergenic
GAGGCGAAGTGCCCTAATAT+GGG 0.528184 2_2:-60202556 Msa0261660:CDS
TGATACTTCTCAAAGGCCTC+AGG 0.528435 2_2:+60199021 None:intergenic
GTGTTGGTCTGGTGGTGAAA+CGG 0.530493 2_2:-60202530 Msa0261660:CDS
CTTGGTGATACTTGTACTCG+AGG 0.530963 2_2:-60202481 Msa0261660:CDS
CTCAGCATTTCCTCGAAAGT+CGG 0.531294 2_2:+60199356 None:intergenic
AATATGGGAGAGTGTTGGTC+TGG 0.533648 2_2:-60202541 Msa0261660:CDS
CATGGTAAGGTCATCATACA+AGG 0.536106 2_2:-60198332 Msa0261660:CDS
AGAGCTACAGAGTGCTGTGC+GGG 0.536462 2_2:-60199271 Msa0261660:CDS
ATTGCTTCAGCCACATTAGT+GGG 0.538011 2_2:+60200059 None:intergenic
AAATGCTGAGTGTGTAGAGA+AGG 0.538656 2_2:-60199343 Msa0261660:CDS
CAAGGAAATGAAGTCTGATA+GGG 0.540465 2_2:+60202729 None:intergenic
GAATTCGGAGGATGAGGCGG+TGG 0.540560 2_2:+60202801 None:intergenic
GAGAGAATTGAAACTTCATA+CGG 0.542449 2_2:-60202587 Msa0261660:CDS
AGGAATCGATTCCTGGTGGT+TGG 0.544922 2_2:-60202636 Msa0261660:CDS
AAGGCTTCTATCAGTATGCT+AGG 0.546070 2_2:+60199924 None:intergenic
CATTATTGAAGTCTTGGTGA+GGG 0.546919 2_2:+60199179 None:intergenic
ACGCGTACTCTGTTGAAGTC+GGG 0.547139 2_2:-60202696 Msa0261660:CDS
TTAGTGGGCTCATCAGGGTC+AGG 0.553845 2_2:+60200074 None:intergenic
ACTTCATACGGTTTGTGAAG+AGG 0.555784 2_2:-60202575 Msa0261660:CDS
GGCGGTGGTTGTTGTTGTGG+TGG 0.556323 2_2:+60202816 None:intergenic
GTGGGCTCATCAGGGTCAGG+TGG 0.563088 2_2:+60200077 None:intergenic
GATTTCGATATGTGGCATCC+GGG 0.563544 2_2:-60198357 Msa0261660:CDS
ATTCCCTTGCAAGACGAGCT+CGG 0.563832 2_2:+60202758 None:intergenic
ACTCCGAGCTCGTCTTGCAA+GGG 0.566242 2_2:-60202761 Msa0261660:CDS
ATATGTGGCATCCGGGCCCA+TGG 0.566837 2_2:-60198350 Msa0261660:CDS
AGCATACTGATAGAAGCCTT+AGG 0.568413 2_2:-60199921 Msa0261660:intron
TGATGACCTTACCATGGGCC+CGG 0.568904 2_2:+60198339 None:intergenic
TGCACATACTTCCAACCACC+AGG 0.576469 2_2:+60202625 None:intergenic
GTGGCGGTGGTGAAAGAGAA+AGG 0.577197 2_2:+60202835 None:intergenic
ATGGGAGAGTGTTGGTCTGG+TGG 0.578110 2_2:-60202538 Msa0261660:CDS
TCTTGGTGAGGGTTCCCGCA+GGG 0.578995 2_2:+60199190 None:intergenic
CTTGGTGAGGGTTCCCGCAG+GGG 0.579756 2_2:+60199191 None:intergenic
CTTGTATGATGACCTTACCA+TGG 0.582701 2_2:+60198333 None:intergenic
AACGCGTACTCTGTTGAAGT+CGG 0.586476 2_2:-60202697 Msa0261660:CDS
CGTGATAGTCACAGATCGCG+TGG 0.587264 2_2:+60202923 None:intergenic
TGTGCATTATGTATAAGAAG+AGG 0.588128 2_2:-60198197 Msa0261660:three_prime_UTR
AAGATTGCTTAAAATTAGCA+CGG 0.591721 2_2:+60199244 None:intergenic
GTAAGGTCATCATACAAGGC+AGG 0.594661 2_2:-60198328 Msa0261660:CDS
CCCTGATGAGCCCACTAATG+TGG 0.596860 2_2:-60200069 Msa0261660:CDS
GCCCTAATATGGGAGAGTGT+TGG 0.597098 2_2:-60202546 Msa0261660:CDS
TTGTATGATGACCTTACCAT+GGG 0.598531 2_2:+60198334 None:intergenic
TGGGAATTCGGAGGATGAGG+CGG 0.600002 2_2:+60202798 None:intergenic
CTGTCTCAATATTATGCGCA+AGG 0.603782 2_2:+60199298 None:intergenic
ACATTATTGAAGTCTTGGTG+AGG 0.604393 2_2:+60199178 None:intergenic
ACTGGCATATGGCGTTTGGA+GGG 0.606011 2_2:+60199060 None:intergenic
GTGATAGGGATTTCGATATG+TGG 0.606126 2_2:-60198365 Msa0261660:intron
GATTTACCTGATCAAGGGAG+CGG 0.608171 2_2:-60199987 Msa0261660:CDS
GAAGTATCAGACTATTGGCA+TGG 0.611193 2_2:-60199007 Msa0261660:CDS
CGAGAGAGATGATGTACTCA+CGG 0.613028 2_2:-60202897 Msa0261660:exon
GGAGTTCGGTGAGATTCTGT+GGG 0.622762 2_2:+60202779 None:intergenic
GTGATGATTTACCTGATCAA+GGG 0.625552 2_2:-60199992 Msa0261660:CDS
AATTGTGAAGACAATGGAGA+AGG 0.629019 2_2:-60199130 Msa0261660:CDS
CCACATTAGTGGGCTCATCA+GGG 0.630322 2_2:+60200069 None:intergenic
GAAATGAAGTCTGATAGGGA+CGG 0.631421 2_2:+60202733 None:intergenic
AATCATAATAGTAGCAGTAG+CGG 0.634511 2_2:+60202504 None:intergenic
CAGCATTTCCTCGAAAGTCG+GGG 0.636512 2_2:+60199358 None:intergenic
AATAGTCTGATACTTCTCAA+AGG 0.644183 2_2:+60199014 None:intergenic
GGCCAAGGATTATGCCCCTG+CGG 0.647190 2_2:-60199205 Msa0261660:CDS
GTGATAGTCACAGATCGCGT+GGG 0.650438 2_2:+60202924 None:intergenic
ATCAGAATATATTACACCTG+AGG 0.655152 2_2:-60199037 Msa0261660:CDS
TGACCAAATTGTGAAGACAA+TGG 0.660066 2_2:-60199136 Msa0261660:CDS
CTTGATCAGGTAAATCATCA+CGG 0.667016 2_2:+60199994 None:intergenic
AATGAAGTCTGATAGGGACG+GGG 0.674374 2_2:+60202735 None:intergenic
GAGATTCTGTGGGAATTCGG+AGG 0.674916 2_2:+60202789 None:intergenic
GCTGAAGCAATTGCATCGTG+GGG 0.675101 2_2:-60200047 Msa0261660:CDS
TGGCTGAAGCAATTGCATCG+TGG 0.685188 2_2:-60200049 Msa0261660:CDS
AAGAGCTACAGAGTGCTGTG+CGG 0.714846 2_2:-60199272 Msa0261660:CDS
ATGAAGGAATCGATTCCTGG+TGG 0.794700 2_2:-60202640 Msa0261660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGAATATTTTTATAGTTT+AGG - chr2_2:60199327-60199346 Msa0261660:CDS 10.0%
!!! TAGAATATTTTTATAGTTTA+GGG - chr2_2:60199328-60199347 Msa0261660:CDS 10.0%
!! TAAAAAAAAAACATGTTTAT+TGG - chr2_2:60201591-60201610 Msa0261660:intron 10.0%
!! AAAAAAAAAACATGTTTATT+GGG - chr2_2:60201592-60201611 Msa0261660:intron 10.0%
!!! TTGTTTTAGTATTCAAAATT+TGG - chr2_2:60198713-60198732 Msa0261660:intron 15.0%
!!! TGTTTTAGTATTCAAAATTT+GGG - chr2_2:60198714-60198733 Msa0261660:intron 15.0%
!! TATTCAATTAATCTAAAAAG+TGG + chr2_2:60199101-60199120 None:intergenic 15.0%
!!! ATGGAAGTTTTTTTATTTTT+AGG + chr2_2:60200134-60200153 None:intergenic 15.0%
!!! TTTTCATTAGAATTAGAATA+TGG + chr2_2:60200153-60200172 None:intergenic 15.0%
!!! TTATCACATTAATCTATTTT+CGG + chr2_2:60201255-60201274 None:intergenic 15.0%
!! TTTATTTATTTGTAGATGAA+AGG - chr2_2:60202190-60202209 Msa0261660:intron 15.0%
!! ATAAATTAAACTATGAAGCA+TGG - chr2_2:60198752-60198771 Msa0261660:intron 20.0%
!! AATAACTGAAAAAAAACCAT+CGG - chr2_2:60199117-60199136 Msa0261660:CDS 20.0%
!! TGATGTATTTCATATAGTTA+GGG + chr2_2:60199211-60199230 None:intergenic 20.0%
!! TTGATGTATTTCATATAGTT+AGG + chr2_2:60199212-60199231 None:intergenic 20.0%
!! TATATGAAAATCCATCAATT+TGG + chr2_2:60199263-60199282 None:intergenic 20.0%
!!! ATGGATTTTCATATACTTTA+TGG - chr2_2:60199268-60199287 Msa0261660:CDS 20.0%
!! TAACTGATGAATCTAAAAAA+TGG - chr2_2:60199404-60199423 Msa0261660:intron 20.0%
!!! GAATCTAAAAAATGGTTTTT+TGG - chr2_2:60199412-60199431 Msa0261660:intron 20.0%
!! AATTTGTCATTGTTGAATAA+TGG - chr2_2:60199470-60199489 Msa0261660:intron 20.0%
!! GATGAAAAAAACATAAAACT+TGG + chr2_2:60199519-60199538 None:intergenic 20.0%
!! TTCTAATGAAAATATTTCCA+AGG - chr2_2:60200161-60200180 Msa0261660:intron 20.0%
!! TCTAATGAAAATATTTCCAA+GGG - chr2_2:60200162-60200181 Msa0261660:intron 20.0%
!! AAATAAACTATATACTCTCA+CGG + chr2_2:60200209-60200228 None:intergenic 20.0%
!! ATAGTGTTCTAACATAAAAA+GGG + chr2_2:60200965-60200984 None:intergenic 20.0%
!! TATAGTGTTCTAACATAAAA+AGG + chr2_2:60200966-60200985 None:intergenic 20.0%
!!! TATCACATTAATCTATTTTC+GGG + chr2_2:60201254-60201273 None:intergenic 20.0%
!! ATATAAAAAAATCAGAACCA+CGG + chr2_2:60202170-60202189 None:intergenic 20.0%
!!! CATTTACTAAAATCTTTTAG+TGG - chr2_2:60202303-60202322 Msa0261660:intron 20.0%
!! ATACAAGGCATAAAATATTT+AGG - chr2_2:60202345-60202364 Msa0261660:intron 20.0%
!! AATTAAATCTCTATAGGAAT+GGG + chr2_2:60202545-60202564 None:intergenic 20.0%
!! TGAAAGAAAAAATAATGAAC+AGG + chr2_2:60202884-60202903 None:intergenic 20.0%
! GCGAAAATTGAAATATTGAT+TGG + chr2_2:60198684-60198703 None:intergenic 25.0%
! ATGACATCAATATGAAATGT+CGG - chr2_2:60198860-60198879 Msa0261660:intron 25.0%
!! AATAGATTTGAAATGTAGTG+TGG - chr2_2:60198901-60198920 Msa0261660:intron 25.0%
! GAAAAAAACATAAAACTTGG+AGG + chr2_2:60199516-60199535 None:intergenic 25.0%
! ATAATCTCATCGAATGATAT+TGG - chr2_2:60199547-60199566 Msa0261660:intron 25.0%
! AATTATGCAAAAAAATCCGT+GGG + chr2_2:60199652-60199671 None:intergenic 25.0%
! AAATTATGCAAAAAAATCCG+TGG + chr2_2:60199653-60199672 None:intergenic 25.0%
! ATAAGCAAGTTGTAATACTT+TGG - chr2_2:60199938-60199957 Msa0261660:CDS 25.0%
! GTTTAAACGAAATTATTCCT+AGG - chr2_2:60200095-60200114 Msa0261660:CDS 25.0%
! AATAAACTATATACTCTCAC+GGG + chr2_2:60200208-60200227 None:intergenic 25.0%
!!! TTTTTGTTGAGAAAAGTATC+CGG - chr2_2:60200287-60200306 Msa0261660:intron 25.0%
!! TACTCCTAAGAATGTTATTT+AGG - chr2_2:60200323-60200342 Msa0261660:intron 25.0%
!! ACTCCTAAGAATGTTATTTA+GGG - chr2_2:60200324-60200343 Msa0261660:intron 25.0%
! TTGTAATTTATCTGCATTCA+GGG + chr2_2:60200453-60200472 None:intergenic 25.0%
! TTTGTAATTTATCTGCATTC+AGG + chr2_2:60200454-60200473 None:intergenic 25.0%
! TAGTGTTCTAACATAAAAAG+GGG + chr2_2:60200964-60200983 None:intergenic 25.0%
! ATATTCAAAATGCATACCTA+AGG + chr2_2:60201223-60201242 None:intergenic 25.0%
!!! ATAATAAAAAGGCGTCTATA+TGG - chr2_2:60201350-60201369 Msa0261660:intron 25.0%
! ATTTGATAGATAGGTGAATT+AGG - chr2_2:60201458-60201477 Msa0261660:intron 25.0%
!! CCATAGTGAATTTTCATTTT+AGG + chr2_2:60201489-60201508 None:intergenic 25.0%
! CCTAAAATGAAAATTCACTA+TGG - chr2_2:60201486-60201505 Msa0261660:intron 25.0%
! TGTTACACATGTTCATTATA+GGG - chr2_2:60201653-60201672 Msa0261660:intron 25.0%
! GTCTCCTTAATAATATAACT+TGG + chr2_2:60201689-60201708 None:intergenic 25.0%
! AAGATTGCTTAAAATTAGCA+CGG + chr2_2:60201884-60201903 None:intergenic 25.0%
!! TGCTAATTTTAAGCAATCTT+TGG - chr2_2:60201884-60201903 Msa0261660:intron 25.0%
! TATAAAAAAATCAGAACCAC+GGG + chr2_2:60202169-60202188 None:intergenic 25.0%
! CAACAAAATTATAACAGCTT+TGG + chr2_2:60202255-60202274 None:intergenic 25.0%
!! CAAAGCTGTTATAATTTTGT+TGG - chr2_2:60202253-60202272 Msa0261660:intron 25.0%
!! TTACTAAAATCTTTTAGTGG+TGG - chr2_2:60202306-60202325 Msa0261660:intron 25.0%
!! ATATTTTATGCCTTGTATTG+TGG + chr2_2:60202343-60202362 None:intergenic 25.0%
! TTGCTAATCCATATTAAATG+TGG - chr2_2:60202475-60202494 Msa0261660:CDS 25.0%
! AAAAAAGGCCACATTTAATA+TGG + chr2_2:60202486-60202505 None:intergenic 25.0%
! TGCTAATTATGGGATAAAAA+AGG + chr2_2:60202501-60202520 None:intergenic 25.0%
! CAATTAAATCTCTATAGGAA+TGG + chr2_2:60202546-60202565 None:intergenic 25.0%
! AGCTACAATTAAATCTCTAT+AGG + chr2_2:60202551-60202570 None:intergenic 25.0%
!! TTTAATTGTAGCTCTGTAAT+TGG - chr2_2:60202558-60202577 Msa0261660:CDS 25.0%
!! TGCTGGATTATGTTAATTTT+TGG - chr2_2:60202642-60202661 Msa0261660:CDS 25.0%
! AATTCTACTTTGTATGTGAT+AGG - chr2_2:60202745-60202764 Msa0261660:CDS 25.0%
! ATTCTACTTTGTATGTGATA+GGG - chr2_2:60202746-60202765 Msa0261660:CDS 25.0%
GAGAGAATTGAAACTTCATA+CGG - chr2_2:60198538-60198557 Msa0261660:intron 30.0%
AATCATAATAGTAGCAGTAG+CGG + chr2_2:60198624-60198643 None:intergenic 30.0%
ACTGCTACTATTATGATTCT+TGG - chr2_2:60198626-60198645 Msa0261660:intron 30.0%
ATAAGCAAGCTGTATTACTT+TGG - chr2_2:60198947-60198966 Msa0261660:intron 30.0%
! CAATGATAAGTTGAATTGAG+TGG - chr2_2:60199014-60199033 Msa0261660:CDS 30.0%
CATATAGTTAGGGACTAAAT+TGG + chr2_2:60199201-60199220 None:intergenic 30.0%
! TGACGTATTTTGCATTGTTT+AGG - chr2_2:60199298-60199317 Msa0261660:CDS 30.0%
! GACGTATTTTGCATTGTTTA+GGG - chr2_2:60199299-60199318 Msa0261660:CDS 30.0%
TAGTTTAGGGACTAAATTGA+TGG - chr2_2:60199372-60199391 Msa0261660:intron 30.0%
!!! CAATTCAGTTTTAAATCCCA+CGG - chr2_2:60199633-60199652 Msa0261660:intron 30.0%
AGTGCTAATTACATTCATCT+AGG - chr2_2:60199677-60199696 Msa0261660:intron 30.0%
! ATCACTGCAAACTTTTTAAC+TGG + chr2_2:60199995-60200014 None:intergenic 30.0%
CAGTGATCAGTTGAATTTAA+TGG - chr2_2:60200008-60200027 Msa0261660:CDS 30.0%
CTTAGCAACTAGATGATAAA+TGG + chr2_2:60200036-60200055 None:intergenic 30.0%
TGCTAAGCATTTAGTACATA+TGG - chr2_2:60200049-60200068 Msa0261660:CDS 30.0%
! TAGGAAATCTTTTAGTACCT+AGG + chr2_2:60200115-60200134 None:intergenic 30.0%
ATGAAAATATTTCCAAGGGA+TGG - chr2_2:60200166-60200185 Msa0261660:intron 30.0%
TGAAAATATTTCCAAGGGAT+GGG - chr2_2:60200167-60200186 Msa0261660:intron 30.0%
ATAAACTATATACTCTCACG+GGG + chr2_2:60200207-60200226 None:intergenic 30.0%
TTGCATGTCTACATTATTCT+TGG - chr2_2:60200234-60200253 Msa0261660:intron 30.0%
!!! CTTGGAAATGTTTTGAAGTT+TGG - chr2_2:60200252-60200271 Msa0261660:intron 30.0%
!!! TTTTGTTGAGAAAAGTATCC+GGG - chr2_2:60200288-60200307 Msa0261660:intron 30.0%
! CTCCTAAGAATGTTATTTAG+GGG - chr2_2:60200325-60200344 Msa0261660:intron 30.0%
! TCCTAAGAATGTTATTTAGG+GGG - chr2_2:60200326-60200345 Msa0261660:intron 30.0%
! TGTGTGTGGAATTTTTATGT+TGG - chr2_2:60200378-60200397 Msa0261660:intron 30.0%
! GTGTGTGGAATTTTTATGTT+GGG - chr2_2:60200379-60200398 Msa0261660:intron 30.0%
! TGTGTGGAATTTTTATGTTG+GGG - chr2_2:60200380-60200399 Msa0261660:intron 30.0%
ACTAACAAAGTCTACATTCA+GGG + chr2_2:60200788-60200807 None:intergenic 30.0%
TTGCATATTATCTGCATTCA+GGG + chr2_2:60200667-60200686 None:intergenic 30.0%
TTTGCATATTATCTGCATTC+AGG + chr2_2:60200668-60200687 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr2_2:60200788-60200807 Msa0261660:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr2_2:60200816-60200835 Msa0261660:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr2_2:60200817-60200836 Msa0261660:intron 30.0%
TGAATGAAGAGAAATTGCAA+GGG + chr2_2:60200891-60200910 None:intergenic 30.0%
TTGCAATTTCTCTTCATTCA+GGG - chr2_2:60200891-60200910 Msa0261660:intron 30.0%
TTTGCAATGTTAAGACATCA+AGG - chr2_2:60201016-60201035 Msa0261660:intron 30.0%
GCTAGAGTTATTTGATAGAT+AGG - chr2_2:60201449-60201468 Msa0261660:intron 30.0%
! ACTTCTACTGTTTGATAGTA+TGG - chr2_2:60201554-60201573 Msa0261660:intron 30.0%
TTTATTGGGATTTGAGCATA+CGG - chr2_2:60201606-60201625 Msa0261660:intron 30.0%
GTGTTACACATGTTCATTAT+AGG - chr2_2:60201652-60201671 Msa0261660:intron 30.0%
ATCTTTGGATGTTCTAATGA+TGG - chr2_2:60201899-60201918 Msa0261660:intron 30.0%
ACCAAGACTTCAATAATGTT+AGG - chr2_2:60201951-60201970 Msa0261660:intron 30.0%
ACCTAACATTATTGAAGTCT+TGG + chr2_2:60201955-60201974 None:intergenic 30.0%
! ACTTCAATAATGTTAGGTTG+TGG - chr2_2:60201957-60201976 Msa0261660:intron 30.0%
! CTTCAATAATGTTAGGTTGT+GGG - chr2_2:60201958-60201977 Msa0261660:intron 30.0%
! TTCAATAATGTTAGGTTGTG+GGG - chr2_2:60201959-60201978 Msa0261660:intron 30.0%
TATATTCTGATACTGGCATA+TGG + chr2_2:60202079-60202098 None:intergenic 30.0%
GGTGTAATATATTCTGATAC+TGG + chr2_2:60202086-60202105 None:intergenic 30.0%
ATCAGAATATATTACACCTG+AGG - chr2_2:60202088-60202107 Msa0261660:intron 30.0%
AATAGTCTGATACTTCTCAA+AGG + chr2_2:60202114-60202133 None:intergenic 30.0%
!! TTTGAGAAGTATCAGACTAT+TGG - chr2_2:60202113-60202132 Msa0261660:intron 30.0%
! ATGAAAGGAATGTATTTTGC+TGG - chr2_2:60202205-60202224 Msa0261660:intron 30.0%
! CTTTTAGTGGTGGTAATATT+TGG - chr2_2:60202316-60202335 Msa0261660:intron 30.0%
AATATTTGGTCCACAATACA+AGG - chr2_2:60202330-60202349 Msa0261660:intron 30.0%
GCATAAAATATTTAGGCTTC+TGG - chr2_2:60202352-60202371 Msa0261660:intron 30.0%
GTAATCATAACTTGATCATG+TGG - chr2_2:60202707-60202726 Msa0261660:CDS 30.0%
TGTGCATTATGTATAAGAAG+AGG - chr2_2:60202928-60202947 Msa0261660:five_prime_UTR 30.0%
CAAGGAAATGAAGTCTGATA+GGG + chr2_2:60198399-60198418 None:intergenic 35.0%
TCAAGGAAATGAAGTCTGAT+AGG + chr2_2:60198400-60198419 None:intergenic 35.0%
! ATCGATTCCTTCATCCATTT+CGG + chr2_2:60198479-60198498 None:intergenic 35.0%
ATTATCACTGACGTAAGTGT+TGG + chr2_2:60198781-60198800 None:intergenic 35.0%
TAGTGTAACTACATGTGTGT+CGG - chr2_2:60198821-60198840 Msa0261660:intron 35.0%
ACATCAATATGAAATGTCGG+TGG - chr2_2:60198863-60198882 Msa0261660:intron 35.0%
! GCTGTATTACTTTGGTAGTT+TGG - chr2_2:60198955-60198974 Msa0261660:intron 35.0%
TGCTTATAATAGTGACCGAA+GGG + chr2_2:60199072-60199091 None:intergenic 35.0%
TTGCTTATAATAGTGACCGA+AGG + chr2_2:60199073-60199092 None:intergenic 35.0%
TCAAAGTTCAGGGACTAAAT+TGG + chr2_2:60199170-60199189 None:intergenic 35.0%
TGAAGAGAGACTGATAGTTT+AGG - chr2_2:60199358-60199377 Msa0261660:CDS 35.0%
GAAGAGAGACTGATAGTTTA+GGG - chr2_2:60199359-60199378 Msa0261660:CDS 35.0%
AGGAGATGTGATTTACTTGA+CGG - chr2_2:60199697-60199716 Msa0261660:intron 35.0%
TAGCTCAAAGCATAGTTTCA+TGG - chr2_2:60199776-60199795 Msa0261660:intron 35.0%
TTGAAGTTCGGATTTCAAAC+TGG - chr2_2:60199816-60199835 Msa0261660:intron 35.0%
! TATTTTCTTTACCCATCCCT+TGG + chr2_2:60200181-60200200 None:intergenic 35.0%
TAAACTATATACTCTCACGG+GGG + chr2_2:60200206-60200225 None:intergenic 35.0%
TCCCCCTAAATAACATTCTT+AGG + chr2_2:60200330-60200349 None:intergenic 35.0%
GACTAACAAAGTCTACATTC+AGG + chr2_2:60200787-60200806 None:intergenic 35.0%
ACTAACGAAGTTTGCATTCA+AGG + chr2_2:60200514-60200533 None:intergenic 35.0%
ACTAACGAAGTCTACATTCA+GGG - chr2_2:60200724-60200743 Msa0261660:intron 35.0%
TCAGGGACTAAATTGACTAA+CGG - chr2_2:60200741-60200760 Msa0261660:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr2_2:60200787-60200806 Msa0261660:intron 35.0%
GAATGAAGAGAAATTGCAAG+GGG + chr2_2:60200890-60200909 None:intergenic 35.0%
CTGAATGAAGAGAAATTGCA+AGG + chr2_2:60200892-60200911 None:intergenic 35.0%
CTTGCAATTTCTCTTCATTC+AGG - chr2_2:60200890-60200909 Msa0261660:intron 35.0%
CTTGATCAGGTAAATCATCA+CGG + chr2_2:60201134-60201153 None:intergenic 35.0%
GTGATGATTTACCTGATCAA+GGG - chr2_2:60201133-60201152 Msa0261660:intron 35.0%
TGGGCATGGGTATAATAAAA+AGG - chr2_2:60201339-60201358 Msa0261660:intron 35.0%
! TTTTCAGTTAGAGCTAGTAG+TGG - chr2_2:60201373-60201392 Msa0261660:intron 35.0%
TTTCAGTTAGAGCTAGTAGT+GGG - chr2_2:60201374-60201393 Msa0261660:intron 35.0%
TGATAGATAGGTGAATTAGG+TGG - chr2_2:60201461-60201480 Msa0261660:intron 35.0%
TTATTGGGATTTGAGCATAC+GGG - chr2_2:60201607-60201626 Msa0261660:intron 35.0%
CGGGAATTAATCTGAAAGTT+TGG - chr2_2:60201626-60201645 Msa0261660:intron 35.0%
ATGTTCATTATAGGGTTGAG+TGG - chr2_2:60201661-60201680 Msa0261660:intron 35.0%
TGTTCATTATAGGGTTGAGT+GGG - chr2_2:60201662-60201681 Msa0261660:intron 35.0%
GGGGCCAAGTTATATTATTA+AGG - chr2_2:60201682-60201701 Msa0261660:intron 35.0%
AAGGACATCTAATCCTGATT+TGG + chr2_2:60201811-60201830 None:intergenic 35.0%
CATTATTGAAGTCTTGGTGA+GGG + chr2_2:60201949-60201968 None:intergenic 35.0%
ACATTATTGAAGTCTTGGTG+AGG + chr2_2:60201950-60201969 None:intergenic 35.0%
ATTGTCTTCACAATTTGGTC+AGG + chr2_2:60201990-60202009 None:intergenic 35.0%
TGACCAAATTGTGAAGACAA+TGG - chr2_2:60201989-60202008 Msa0261660:intron 35.0%
TCTCCATTGTCTTCACAATT+TGG + chr2_2:60201995-60202014 None:intergenic 35.0%
AATTGTGAAGACAATGGAGA+AGG - chr2_2:60201995-60202014 Msa0261660:intron 35.0%
AAAATATTTAGGCTTCTGGC+TGG - chr2_2:60202356-60202375 Msa0261660:intron 35.0%
TGCTGCTAACTGCTAATTAT+GGG + chr2_2:60202511-60202530 None:intergenic 35.0%
ATGCTGCTAACTGCTAATTA+TGG + chr2_2:60202512-60202531 None:intergenic 35.0%
!! TCCTTTTAATTGTTGCATGC+TGG - chr2_2:60202625-60202644 Msa0261660:CDS 35.0%
TCCAGCATGCAACAATTAAA+AGG + chr2_2:60202629-60202648 None:intergenic 35.0%
TGATCATGTGGTATGAATGA+TGG - chr2_2:60202719-60202738 Msa0261660:CDS 35.0%
TTGTATGATGACCTTACCAT+GGG + chr2_2:60202794-60202813 None:intergenic 35.0%
! AATCCATGATTGACTCAGAT+CGG - chr2_2:60202834-60202853 Msa0261660:CDS 35.0%
!!! GGATTTGAGGTTTTTAGCGA+CGG + chr2_2:60198261-60198280 None:intergenic 40.0%
!!! AAGGTTTTGTGGTGGATTTG+AGG + chr2_2:60198274-60198293 None:intergenic 40.0%
!! GAAAGAGAAAGGTTTTGTGG+TGG + chr2_2:60198282-60198301 None:intergenic 40.0%
! GGTGAAAGAGAAAGGTTTTG+TGG + chr2_2:60198285-60198304 None:intergenic 40.0%
AAATGAAGTCTGATAGGGAC+GGG + chr2_2:60198394-60198413 None:intergenic 40.0%
GAAATGAAGTCTGATAGGGA+CGG + chr2_2:60198395-60198414 None:intergenic 40.0%
!!! ATCCATTTCGGTTTTGGAAG+CGG + chr2_2:60198467-60198486 None:intergenic 40.0%
TCCAAAACCGAAATGGATGA+AGG - chr2_2:60198469-60198488 Msa0261660:intron 40.0%
! TCCTTCATCCATTTCGGTTT+TGG + chr2_2:60198473-60198492 None:intergenic 40.0%
ACTTCATACGGTTTGTGAAG+AGG - chr2_2:60198550-60198569 Msa0261660:intron 40.0%
ACCAACACTCTCCCATATTA+GGG + chr2_2:60198583-60198602 None:intergenic 40.0%
AATATGAAATGTCGGTGGCT+TGG - chr2_2:60198868-60198887 Msa0261660:intron 40.0%
ATTTGTCCGGGTGAAAACTA+TGG + chr2_2:60199042-60199061 None:intergenic 40.0%
TTAGGGACTAAATTGGTGAG+AGG + chr2_2:60199194-60199213 None:intergenic 40.0%
! AGTCCCTAGTATTGAGATTG+CGG - chr2_2:60199235-60199254 Msa0261660:CDS 40.0%
TTGGTTACAATAGTGACCAG+AGG - chr2_2:60199431-60199450 Msa0261660:intron 40.0%
CAGTAGTTAGATACATCCTC+TGG + chr2_2:60199450-60199469 None:intergenic 40.0%
ATTGTTATGCCGATGAGTGA+AGG - chr2_2:60199595-60199614 Msa0261660:intron 40.0%
TGCATAATCTAGTGCACTCA+TGG - chr2_2:60199730-60199749 Msa0261660:intron 40.0%
TCATGGAACAACTGAACAAG+TGG - chr2_2:60199793-60199812 Msa0261660:intron 40.0%
CTGAACAAGTGGTTGAAGTT+CGG - chr2_2:60199804-60199823 Msa0261660:intron 40.0%
ATGCGCATACACACACATTA+AGG - chr2_2:60199861-60199880 Msa0261660:intron 40.0%
GGAGTAAGAAATCGTAATCC+CGG + chr2_2:60200309-60200328 None:intergenic 40.0%
GTAAGTACTCCTAAAACCAG+TGG - chr2_2:60200351-60200370 Msa0261660:intron 40.0%
!!! ACACAACTTCCACTGGTTTT+AGG + chr2_2:60200363-60200382 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - chr2_2:60200407-60200426 Msa0261660:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG + chr2_2:60200546-60200565 None:intergenic 40.0%
TCAGGGACTAAAGTGACTAA+CGG + chr2_2:60200709-60200728 None:intergenic 40.0%
! CAGGGACTGTTTTGCAATTT+CGG - chr2_2:60200592-60200611 Msa0261660:intron 40.0%
! AGGGACTGTTTTGCAATTTC+GGG - chr2_2:60200593-60200612 Msa0261660:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr2_2:60200406-60200425 Msa0261660:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - chr2_2:60200407-60200426 Msa0261660:intron 40.0%
GACTAACGAAGTCTACATTC+AGG - chr2_2:60200723-60200742 Msa0261660:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + chr2_2:60200407-60200426 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + chr2_2:60200406-60200425 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + chr2_2:60200407-60200426 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + chr2_2:60200406-60200425 None:intergenic 40.0%
ATTGCTTCAGCCACATTAGT+GGG + chr2_2:60201069-60201088 None:intergenic 40.0%
AATTGCTTCAGCCACATTAG+TGG + chr2_2:60201070-60201089 None:intergenic 40.0%
CGTGATGATTTACCTGATCA+AGG - chr2_2:60201132-60201151 Msa0261660:intron 40.0%
AAGGCTTCTATCAGTATGCT+AGG + chr2_2:60201204-60201223 None:intergenic 40.0%
AGCATACTGATAGAAGCCTT+AGG - chr2_2:60201204-60201223 Msa0261660:intron 40.0%
!! TCAAGCCTTAGTTTGCTAGA+TGG - chr2_2:60201319-60201338 Msa0261660:intron 40.0%
!! CAAGCCTTAGTTTGCTAGAT+GGG - chr2_2:60201320-60201339 Msa0261660:intron 40.0%
!! TTAGTTTGCTAGATGGGCAT+GGG - chr2_2:60201326-60201345 Msa0261660:intron 40.0%
GGGTCATGAATGTGAAATGA+AGG - chr2_2:60201400-60201419 Msa0261660:intron 40.0%
GTTCATTATAGGGTTGAGTG+GGG - chr2_2:60201663-60201682 Msa0261660:intron 40.0%
TTAGAGCAACAATCGTCACA+TGG + chr2_2:60201732-60201751 None:intergenic 40.0%
AAATGCTGAGTGTGTAGAGA+AGG - chr2_2:60201782-60201801 Msa0261660:intron 40.0%
GTAGAGAAGGTTTCCAAATC+AGG - chr2_2:60201795-60201814 Msa0261660:intron 40.0%
CTGTCTCAATATTATGCGCA+AGG + chr2_2:60201830-60201849 None:intergenic 40.0%
!! GGTGTTGATGTGATGACATT+TGG - chr2_2:60202029-60202048 Msa0261660:intron 40.0%
! GAAGTATCAGACTATTGGCA+TGG - chr2_2:60202118-60202137 Msa0261660:intron 40.0%
TCAGACTATTGGCATGGAAA+TGG - chr2_2:60202124-60202143 Msa0261660:intron 40.0%
GTCTATAGCATTTATTCCCG+TGG - chr2_2:60202150-60202169 Msa0261660:intron 40.0%
GTGATAGGGATTTCGATATG+TGG - chr2_2:60202760-60202779 Msa0261660:CDS 40.0%
CTTGTATGATGACCTTACCA+TGG + chr2_2:60202795-60202814 None:intergenic 40.0%
CATGGTAAGGTCATCATACA+AGG - chr2_2:60202793-60202812 Msa0261660:CDS 40.0%
! ATCCATGATTGACTCAGATC+GGG - chr2_2:60202835-60202854 Msa0261660:CDS 40.0%
CGAGAGAGATGATGTACTCA+CGG - chr2_2:60198228-60198247 Msa0261660:three_prime_UTR 45.0%
GGTGAGATTCTGTGGGAATT+CGG + chr2_2:60198342-60198361 None:intergenic 45.0%
AATGAAGTCTGATAGGGACG+GGG + chr2_2:60198393-60198412 None:intergenic 45.0%
GTACGCGTTGTTCGATTTCA+AGG + chr2_2:60198417-60198436 None:intergenic 45.0%
AACGCGTACTCTGTTGAAGT+CGG - chr2_2:60198428-60198447 Msa0261660:intron 45.0%
ATCCGCTTCCAAAACCGAAA+TGG - chr2_2:60198462-60198481 Msa0261660:intron 45.0%
! TGGATGAAGGAATCGATTCC+TGG - chr2_2:60198482-60198501 Msa0261660:intron 45.0%
! ATGAAGGAATCGATTCCTGG+TGG - chr2_2:60198485-60198504 Msa0261660:intron 45.0%
GACCAACACTCTCCCATATT+AGG + chr2_2:60198584-60198603 None:intergenic 45.0%
!! AATATGGGAGAGTGTTGGTC+TGG - chr2_2:60198584-60198603 Msa0261660:intron 45.0%
! CTTGGTGATACTTGTACTCG+AGG - chr2_2:60198644-60198663 Msa0261660:intron 45.0%
ATACTTGTACTCGAGGTTGC+AGG - chr2_2:60198651-60198670 Msa0261660:intron 45.0%
TGAAATGTAGTGTGGCGTGT+AGG - chr2_2:60198909-60198928 Msa0261660:intron 45.0%
! AAGGGTGTACACATTTGTCC+GGG + chr2_2:60199054-60199073 None:intergenic 45.0%
! GAAGGGTGTACACATTTGTC+CGG + chr2_2:60199055-60199074 None:intergenic 45.0%
GGACAAATGTGTACACCCTT+CGG - chr2_2:60199054-60199073 Msa0261660:CDS 45.0%
TAGTTCAGGGACTAAACCGA+TGG + chr2_2:60199136-60199155 None:intergenic 45.0%
!! GGTGAGAGGTTGATAGTTCA+GGG + chr2_2:60199149-60199168 None:intergenic 45.0%
!! TGGTGAGAGGTTGATAGTTC+AGG + chr2_2:60199150-60199169 None:intergenic 45.0%
TCAGGGACTAAATTGGTGAG+AGG + chr2_2:60199163-60199182 None:intergenic 45.0%
GGTGAGAGGTTCAAAGTTCA+GGG + chr2_2:60199180-60199199 None:intergenic 45.0%
TGGTGAGAGGTTCAAAGTTC+AGG + chr2_2:60199181-60199200 None:intergenic 45.0%
! GTCCCTAGTATTGAGATTGC+GGG - chr2_2:60199236-60199255 Msa0261660:CDS 45.0%
GTCCCGCAATCTCAATACTA+GGG + chr2_2:60199241-60199260 None:intergenic 45.0%
AGATTGCGGGACCAAATTGA+TGG - chr2_2:60199249-60199268 Msa0261660:CDS 45.0%
GTACTGCAACCTTCACTCAT+CGG + chr2_2:60199607-60199626 None:intergenic 45.0%
CACTCATGGATTCTAAGCTG+TGG - chr2_2:60199744-60199763 Msa0261660:intron 45.0%
AAACCAGTGGAAGTTGTGTG+TGG - chr2_2:60200364-60200383 Msa0261660:intron 45.0%
ATTCCACACACAACTTCCAC+TGG + chr2_2:60200370-60200389 None:intergenic 45.0%
ACTTTAGTCCCTGAATCGGA+AGG - chr2_2:60200411-60200430 Msa0261660:intron 45.0%
CTTTAGTCCCTGAATCGGAA+GGG - chr2_2:60200412-60200431 Msa0261660:intron 45.0%
GACTAACGGAGTCTACATTC+AGG + chr2_2:60200547-60200566 None:intergenic 45.0%
TCCCTGAAATTGACCATGCA+GGG - chr2_2:60200574-60200593 Msa0261660:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + chr2_2:60200692-60200711 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + chr2_2:60200590-60200609 None:intergenic 45.0%
! GTCACTTTAGTCCCTGAATG+GGG - chr2_2:60200622-60200641 Msa0261660:intron 45.0%
TATGCAAAACAGTCCCTGCA+TGG - chr2_2:60200680-60200699 Msa0261660:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG - chr2_2:60200692-60200711 Msa0261660:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG + chr2_2:60200574-60200593 None:intergenic 45.0%
ACTAACGGAGTCTGCATTCA+GGG - chr2_2:60200756-60200775 Msa0261660:intron 45.0%
! GTCACTTTAGTCCCTGAATG+GGG + chr2_2:60200622-60200641 None:intergenic 45.0%
ATCGTGGGGTTTGGATTATG+TGG - chr2_2:60201092-60201111 Msa0261660:intron 45.0%
GATTTACCTGATCAAGGGAG+CGG - chr2_2:60201138-60201157 Msa0261660:intron 45.0%
CATGCCCATCTAGCAAACTA+AGG + chr2_2:60201327-60201346 None:intergenic 45.0%
!! CTTAGTTTGCTAGATGGGCA+TGG - chr2_2:60201325-60201344 Msa0261660:intron 45.0%
! TTAGAGCTAGTAGTGGGAGT+GGG - chr2_2:60201380-60201399 Msa0261660:intron 45.0%
TCAGCATTTCCTCGAAAGTC+GGG + chr2_2:60201771-60201790 None:intergenic 45.0%
CTCAGCATTTCCTCGAAAGT+CGG + chr2_2:60201772-60201791 None:intergenic 45.0%
GGATGTTCTAATGATGGCCA+AGG - chr2_2:60201905-60201924 Msa0261660:intron 45.0%
TGATACTGGCATATGGCGTT+TGG + chr2_2:60202072-60202091 None:intergenic 45.0%
TGATACTTCTCAAAGGCCTC+AGG + chr2_2:60202107-60202126 None:intergenic 45.0%
TCACCATGCATGCGTAATCA+TGG - chr2_2:60202592-60202611 Msa0261660:CDS 45.0%
GGATTTCGATATGTGGCATC+CGG - chr2_2:60202767-60202786 Msa0261660:CDS 45.0%
GATTTCGATATGTGGCATCC+GGG - chr2_2:60202768-60202787 Msa0261660:CDS 45.0%
GTAAGGTCATCATACAAGGC+AGG - chr2_2:60202797-60202816 Msa0261660:CDS 45.0%
GTGATAGTCACAGATCGCGT+GGG + chr2_2:60198204-60198223 None:intergenic 50.0%
GAGATTCTGTGGGAATTCGG+AGG + chr2_2:60198339-60198358 None:intergenic 50.0%
! GGAGTTCGGTGAGATTCTGT+GGG + chr2_2:60198349-60198368 None:intergenic 50.0%
ATTCCCTTGCAAGACGAGCT+CGG + chr2_2:60198370-60198389 None:intergenic 50.0%
ACGCGTACTCTGTTGAAGTC+GGG - chr2_2:60198429-60198448 Msa0261660:intron 50.0%
! AGGAATCGATTCCTGGTGGT+TGG - chr2_2:60198489-60198508 Msa0261660:intron 50.0%
TGCACATACTTCCAACCACC+AGG + chr2_2:60198503-60198522 None:intergenic 50.0%
! AGAGGCGAAGTGCCCTAATA+TGG - chr2_2:60198568-60198587 Msa0261660:intron 50.0%
! GAGGCGAAGTGCCCTAATAT+GGG - chr2_2:60198569-60198588 Msa0261660:intron 50.0%
! GCCCTAATATGGGAGAGTGT+TGG - chr2_2:60198579-60198598 Msa0261660:intron 50.0%
! GTGTTGGTCTGGTGGTGAAA+CGG - chr2_2:60198595-60198614 Msa0261660:intron 50.0%
! TGTTGGTCTGGTGGTGAAAC+GGG - chr2_2:60198596-60198615 Msa0261660:intron 50.0%
GCGTGTAGGTGTGTGCATAT+AGG - chr2_2:60198923-60198942 Msa0261660:intron 50.0%
! GTGGCTCCATAGTTTTCACC+CGG - chr2_2:60199033-60199052 Msa0261660:CDS 50.0%
GGTCCCGCAATCTCAATACT+AGG + chr2_2:60199242-60199261 None:intergenic 50.0%
GCGCATGCACATGTGTTACA+AGG + chr2_2:60199847-60199866 None:intergenic 50.0%
GACGAATCCCTTCCGATTCA+GGG + chr2_2:60200422-60200441 None:intergenic 50.0%
TGACGAATCCCTTCCGATTC+AGG + chr2_2:60200423-60200442 None:intergenic 50.0%
GTCCCTGAAATTGACCATGC+AGG - chr2_2:60200573-60200592 Msa0261660:intron 50.0%
GTCCCTGCATGGTCAATTTC+AGG + chr2_2:60200691-60200710 None:intergenic 50.0%
GACGAATCGTTCCCCATTCA+GGG + chr2_2:60200848-60200867 None:intergenic 50.0%
TGACGAATCGTTCCCCATTC+AGG + chr2_2:60200847-60200866 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG - chr2_2:60200691-60200710 Msa0261660:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG + chr2_2:60200573-60200592 None:intergenic 50.0%
GACTAACGGAGTCTGCATTC+AGG - chr2_2:60200755-60200774 Msa0261660:intron 50.0%
TGACGAATCGTTCCCCATTC+AGG - chr2_2:60200847-60200866 Msa0261660:intron 50.0%
GACGAATCGTTCCCCATTCA+GGG - chr2_2:60200848-60200867 Msa0261660:intron 50.0%
TGACGAATCCTCTCCCATTC+AGG - chr2_2:60200921-60200940 Msa0261660:intron 50.0%
GACGAATCCTCTCCCATTCA+GGG - chr2_2:60200922-60200941 Msa0261660:intron 50.0%
CTTTAGTCCCTGAATGGGAG+AGG + chr2_2:60200932-60200951 None:intergenic 50.0%
!! CCACATTAGTGGGCTCATCA+GGG + chr2_2:60201059-60201078 None:intergenic 50.0%
TGGCTGAAGCAATTGCATCG+TGG - chr2_2:60201076-60201095 Msa0261660:intron 50.0%
GGCTGAAGCAATTGCATCGT+GGG - chr2_2:60201077-60201096 Msa0261660:intron 50.0%
GCTGAAGCAATTGCATCGTG+GGG - chr2_2:60201078-60201097 Msa0261660:intron 50.0%
AGCAATTGCATCGTGGGGTT+TGG - chr2_2:60201083-60201102 Msa0261660:intron 50.0%
AAATGACCGCTCCCTTGATC+AGG + chr2_2:60201147-60201166 None:intergenic 50.0%
! GTTAGAGCTAGTAGTGGGAG+TGG - chr2_2:60201379-60201398 Msa0261660:intron 50.0%
CAGCATTTCCTCGAAAGTCG+GGG + chr2_2:60201770-60201789 None:intergenic 50.0%
!! AAGAGCTACAGAGTGCTGTG+CGG - chr2_2:60201853-60201872 Msa0261660:intron 50.0%
ACTGGCATATGGCGTTTGGA+GGG + chr2_2:60202068-60202087 None:intergenic 50.0%
TACTGGCATATGGCGTTTGG+AGG + chr2_2:60202069-60202088 None:intergenic 50.0%
TCTATAGGAATGGGCCACCA+GGG + chr2_2:60202536-60202555 None:intergenic 50.0%
GTGCCATGATTACGCATGCA+TGG + chr2_2:60202598-60202617 None:intergenic 50.0%
AGCCCGATCTGAGTCAATCA+TGG + chr2_2:60202840-60202859 None:intergenic 50.0%
CGTGATAGTCACAGATCGCG+TGG + chr2_2:60198205-60198224 None:intergenic 55.0%
GTGGCGGTGGTGAAAGAGAA+AGG + chr2_2:60198293-60198312 None:intergenic 55.0%
! GGTGGTTGTTGTTGTGGTGG+CGG + chr2_2:60198309-60198328 None:intergenic 55.0%
! TGAGGCGGTGGTTGTTGTTG+TGG + chr2_2:60198315-60198334 None:intergenic 55.0%
TGGGAATTCGGAGGATGAGG+CGG + chr2_2:60198330-60198349 None:intergenic 55.0%
CTGTGGGAATTCGGAGGATG+AGG + chr2_2:60198333-60198352 None:intergenic 55.0%
! CGGAGTTCGGTGAGATTCTG+TGG + chr2_2:60198350-60198369 None:intergenic 55.0%
TGCAAGACGAGCTCGGAGTT+CGG + chr2_2:60198363-60198382 None:intergenic 55.0%
AACTCCGAGCTCGTCTTGCA+AGG - chr2_2:60198363-60198382 Msa0261660:intron 55.0%
ACTCCGAGCTCGTCTTGCAA+GGG - chr2_2:60198364-60198383 Msa0261660:intron 55.0%
!! ATGGGAGAGTGTTGGTCTGG+TGG - chr2_2:60198587-60198606 Msa0261660:intron 55.0%
!! TTAGTGGGCTCATCAGGGTC+AGG + chr2_2:60201054-60201073 None:intergenic 55.0%
CCCTGATGAGCCCACTAATG+TGG - chr2_2:60201056-60201075 Msa0261660:intron 55.0%
!! GCCACATTAGTGGGCTCATC+AGG + chr2_2:60201060-60201079 None:intergenic 55.0%
!! AGAGCTACAGAGTGCTGTGC+GGG - chr2_2:60201854-60201873 Msa0261660:intron 55.0%
ATGGAGAAGGTGAGAGCAGC+AGG - chr2_2:60202008-60202027 Msa0261660:intron 55.0%
TAGCAGTTAGCAGCATGCCC+TGG - chr2_2:60202516-60202535 Msa0261660:CDS 55.0%
CTCTATAGGAATGGGCCACC+AGG + chr2_2:60202537-60202556 None:intergenic 55.0%
TGATGACCTTACCATGGGCC+CGG + chr2_2:60202789-60202808 None:intergenic 55.0%
!! GGTTGTTGTTGTGGTGGCGG+TGG + chr2_2:60198306-60198325 None:intergenic 60.0%
! GGCGGTGGTTGTTGTTGTGG+TGG + chr2_2:60198312-60198331 None:intergenic 60.0%
GAATTCGGAGGATGAGGCGG+TGG + chr2_2:60198327-60198346 None:intergenic 60.0%
! TCATCAGGGTCAGGTGGTGG+AGG + chr2_2:60201045-60201064 None:intergenic 60.0%
GCAACAGTCCCCGACTTTCG+AGG - chr2_2:60201759-60201778 Msa0261660:intron 60.0%
GGCCAAGGATTATGCCCCTG+CGG - chr2_2:60201920-60201939 Msa0261660:intron 60.0%
GCCAAGGATTATGCCCCTGC+GGG - chr2_2:60201921-60201940 Msa0261660:intron 60.0%
! TCCCGCAGGGGCATAATCCT+TGG + chr2_2:60201925-60201944 None:intergenic 60.0%
TCTTGGTGAGGGTTCCCGCA+GGG + chr2_2:60201938-60201957 None:intergenic 60.0%
CAGTTAGCAGCATGCCCTGG+TGG - chr2_2:60202519-60202538 Msa0261660:CDS 60.0%
ATATGTGGCATCCGGGCCCA+TGG - chr2_2:60202775-60202794 Msa0261660:CDS 60.0%
GGCTCATCAGGGTCAGGTGG+TGG + chr2_2:60201048-60201067 None:intergenic 65.0%
GTGGGCTCATCAGGGTCAGG+TGG + chr2_2:60201051-60201070 None:intergenic 65.0%
CTTGGTGAGGGTTCCCGCAG+GGG + chr2_2:60201937-60201956 None:intergenic 65.0%
GTCTTGGTGAGGGTTCCCGC+AGG + chr2_2:60201939-60201958 None:intergenic 65.0%
TGGCATCCGGGCCCATGGTA+AGG - chr2_2:60202780-60202799 Msa0261660:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 60198188 60202959 60198188 ID=Msa0261660;Name=Msa0261660
chr2_2 mRNA 60198188 60202959 60198188 ID=Msa0261660-mRNA-1;Parent=Msa0261660;Name=Msa0261660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=48|1|1|1|1|1|4|82|379
chr2_2 exon 60198188 60198380 60198188 ID=Msa0261660-mRNA-1:exon:18512;Parent=Msa0261660-mRNA-1
chr2_2 exon 60199002 60199381 60199002 ID=Msa0261660-mRNA-1:exon:18511;Parent=Msa0261660-mRNA-1
chr2_2 exon 60199922 60200133 60199922 ID=Msa0261660-mRNA-1:exon:18510;Parent=Msa0261660-mRNA-1
chr2_2 exon 60202475 60202959 60202475 ID=Msa0261660-mRNA-1:exon:18509;Parent=Msa0261660-mRNA-1
chr2_2 five_prime_UTR 60202912 60202959 60202912 ID=Msa0261660-mRNA-1:five_prime_utr;Parent=Msa0261660-mRNA-1
chr2_2 CDS 60202475 60202911 60202475 ID=Msa0261660-mRNA-1:cds;Parent=Msa0261660-mRNA-1
chr2_2 CDS 60199922 60200133 60199922 ID=Msa0261660-mRNA-1:cds;Parent=Msa0261660-mRNA-1
chr2_2 CDS 60199002 60199381 60199002 ID=Msa0261660-mRNA-1:cds;Parent=Msa0261660-mRNA-1
chr2_2 CDS 60198270 60198380 60198270 ID=Msa0261660-mRNA-1:cds;Parent=Msa0261660-mRNA-1
chr2_2 three_prime_UTR 60198188 60198269 60198188 ID=Msa0261660-mRNA-1:three_prime_utr;Parent=Msa0261660-mRNA-1
Gene Sequence

>Msa0261660

ATGATGTACTCACGGTTCAGAACCGTCGCTAAAAACCTCAAATCCACCACAAAACCTTTCTCTTTCACCACCGCCACCACAACAACAACCACCGCCTCATCCTCCGAATTCCCACAGAATCTCACCGAACTCCGAGCTCGTCTTGCAAGGGAATCCCCGTCCCTATCAGACTTCATTTCCTTGAAATCGAACAACGCGTACTCTGTTGAAGTCGGGACGAAGAAGAATCCGCTTCCAAAACCGAAATGGATGAAGGAATCGATTCCTGGTGGTTGGAAGTATGTGCAGATTAAGAAGAAACTGAGAGAATTGAAACTTCATACGGTTTGTGAAGAGGCGAAGTGCCCTAATATGGGAGAGTGTTGGTCTGGTGGTGAAACGGGTACCGCTACTGCTACTATTATGATTCTTGGTGATACTTGTACTCGAGGTTGCAGATTTTGCAATGTTAAGACATCAAGGACTCCTCCACCACCTGACCCTGATGAGCCCACTAATGTGGCTGAAGCAATTGCATCGTGGGGTTTGGATTATGTGGTTATAACAAGCGTTGACCGTGATGATTTACCTGATCAAGGGAGCGGTCATTTTACTGAAACAGTTCAGAAGCTGAAGATACTGAAACCTAGCATACTGATAGAAGCCTTAGTCCCCGACTTTCGAGGAAATGCTGAGTGTGTAGAGAAGGTTTCCAAATCAGGATTAGATGTCCTTGCGCATAATATTGAGACAGTTGAAGAGCTACAGAGTGCTGTGCGGGATCACCGTGCTAATTTTAAGCAATCTTTGGATGTTCTAATGATGGCCAAGGATTATGCCCCTGCGGGAACCCTCACCAAGACTTCAATAATGTTAGGTTGTGGGGAAACACCTGACCAAATTGTGAAGACAATGGAGAAGGTGAGAGCAGCAGGTGTTGATGTGATGACATTTGGTCAGTATATGAGACCCTCCAAACGCCATATGCCAGTATCAGAATATATTACACCTGAGGCCTTTGAGAAGTATCAGACTATTGGCATGGAAATGGGATTTCGATATGTGGCATCCGGGCCCATGGTAAGGTCATCATACAAGGCAGGTGAATTCTATATTAAATCCATGATTGACTCAGATCGGGCTGTATCTTCTCAAAGCTGA

Protein sequence

>Msa0261660

MMYSRFRTVAKNLKSTTKPFSFTTATTTTTTASSSEFPQNLTELRARLARESPSLSDFISLKSNNAYSVEVGTKKNPLPKPKWMKESIPGGWKYVQIKKKLRELKLHTVCEEAKCPNMGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPTNVAEAIASWGLDYVVITSVDRDDLPDQGSGHFTETVQKLKILKPSILIEALVPDFRGNAECVEKVSKSGLDVLAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYAPAGTLTKTSIMLGCGETPDQIVKTMEKVRAAGVDVMTFGQYMRPSKRHMPVSEYITPEAFEKYQTIGMEMGFRYVASGPMVRSSYKAGEFYIKSMIDSDRAVSSQS*