AlfalfaGEDB | Msa0014280

M. sativa cultivar zhongmu-4 / Msa0014280

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0014280	XP_013466877.1	94.488	254	14	0	1	254	1	254	6.52e-166	469

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0014280	sp\|Q9FMY4\|Y5316_ARATH	27.972	286	135	11	9	252	14	270	9.39e-21	91.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0014280	A0A072VHN8	94.488	254	14	0	1	254	1	254	3.11e-166	469

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0014280	0.814084	1.844201e-51	-8.615850e-47
Msa0014280	Msa0030800	0.846122	2.647833e-59	-8.615850e-47
Msa0014280	Msa0031410	0.801378	9.262679e-49	-8.615850e-47
Msa0014280	Msa0034540	0.803791	2.945120e-49	-8.615850e-47
Msa0014280	Msa0034590	-0.805157	1.528749e-49	-8.615850e-47
Msa0014280	Msa0048380	0.817383	3.393581e-52	-8.615850e-47
Msa0014280	Msa0051480	0.821291	4.365220e-53	-8.615850e-47
Msa0014280	Msa0070120	0.800462	1.425009e-48	-8.615850e-47
Msa0014280	Msa0071470	0.803956	2.721629e-49	-8.615850e-47
Msa0014280	Msa0078210	0.850758	1.380199e-60	-8.615850e-47

Showing 1 to 10 of 289 entries

Previous1 2 3 4 5…29Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0014280	MtrunA17_Chr1g0164301	94.488	254	14	0	1	254	1	254	6.00e-170	469

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0014280	AT5G08240.1	47.059	85	40	2	169	252	176	256	9.91e-24	96.7
Msa0014280	AT5G23160.1	27.972	286	135	11	9	252	14	270	9.55e-22	91.7

Showing 1 to 2 of 2 entries

Previous1Next

Find 50 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTATGTCAAAGAATGATG+TGG	0.599103	1_1:-22603867	Msa0014280:CDS
ACACCACTATTTCTAAAACG+TGG	0.710690	1_1:+22603917	None:intergenic
ACAGAAGACACACATGTACA+AGG	0.596924	1_1:-22604148	Msa0014280:CDS
ACCGTAGACGGCGGAATTGA+CGG	0.482737	1_1:+22605119	None:intergenic
ACCGTCAATTCCGCCGTCTA+CGG	0.455743	1_1:-22605120	Msa0014280:CDS
ACCTGTGTTGGTGTATAATA+AGG	0.196392	1_1:+22605080	None:intergenic
AGCCTTCGTTCTTGTCGTTT+TGG	0.310594	1_1:+22604106	None:intergenic
AGCTTCAAGCGGCACCGTTT+TGG	0.297229	1_1:+22605226	None:intergenic
AGTATAGACATTCCAACTAT+AGG	0.430345	1_1:+22604019	None:intergenic
AGTTCATATGATCCTATAGT+TGG	0.462595	1_1:-22604031	Msa0014280:CDS

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGCAAAAGAAAAGTAGT+TGG	-	chr1_1:22603689-22603708	Msa0014280:three_prime_UTR	30.0%
TCTCTCATTATTCAAAGTCA+CGG	-	chr1_1:22603779-22603798	Msa0014280:exon	30.0%
AGTTCATATGATCCTATAGT+TGG	-	chr1_1:22604947-22604966	Msa0014280:intron	30.0%
AGTATAGACATTCCAACTAT+AGG	+	chr1_1:22604962-22604981	None:intergenic	30.0%
CAAAGCAAAAGAAAAGTAGT+TGG	-	chr1_1:22603689-22603708	Msa0014280:three_prime_UTR	30.0%
TCTCTCATTATTCAAAGTCA+CGG	-	chr1_1:22603779-22603798	Msa0014280:exon	30.0%
AGTTCATATGATCCTATAGT+TGG	-	chr1_1:22604947-22604966	Msa0014280:intron	30.0%
AGTATAGACATTCCAACTAT+AGG	+	chr1_1:22604962-22604981	None:intergenic	30.0%
TCTCAAAAATGTGTGGTAGT+TGG	+	chr1_1:22604109-22604128	None:intergenic	35.0%
ATGGTTCTCTCAAAAATGTG+TGG	+	chr1_1:22604116-22604135	None:intergenic	35.0%

Showing 1 to 10 of 206 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	22603568	22605432	22603568	ID=Msa0014280;Name=Msa0014280
chr1_1	mRNA	22603568	22605432	22603568	ID=Msa0014280-mRNA-1;Parent=Msa0014280;Name=Msa0014280-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|0.5\|1\|1\|1\|2\|219\|254
chr1_1	exon	22603568	22604200	22603568	ID=Msa0014280-mRNA-1:exon:7961;Parent=Msa0014280-mRNA-1
chr1_1	exon	22605082	22605432	22605082	ID=Msa0014280-mRNA-1:exon:7960;Parent=Msa0014280-mRNA-1
chr1_1	CDS	22605082	22605432	22605082	ID=Msa0014280-mRNA-1:cds;Parent=Msa0014280-mRNA-1
chr1_1	CDS	22603787	22604200	22603787	ID=Msa0014280-mRNA-1:cds;Parent=Msa0014280-mRNA-1
chr1_1	three_prime_UTR	22603568	22603786	22603568	ID=Msa0014280-mRNA-1:three_prime_utr;Parent=Msa0014280-mRNA-1

Gene Sequence

>Msa0014280

ATGGCCAAAACCAAAAACTCAAAATCTAAAACCTCTATTTTTCTATGTTGCTTTAGATCACACATGCCAAATAAACCTTCAACAAATGATTCATCAAACGTTAAAGAATCTAATCCTATTCCAAAGCAAAAGAAAAGTAGTTGGTTTTCATGGAGATGGATTAAAATGAAGATGAAGTCAACGTCCAAAACGGTGCCGCTTGAAGCTTCATTCTCTCATTATTCAAAGTCACGGTCAAAGTTTTTAACTCTTCATCATAAATCTAAAAAAACTCTACCAACCAATCCTCCACCGTCAATTCCGCCGTCTACGGTGGTGCTCCCGGGCACCCCTTATTATACACCAACACAGACAAGGCATGGTCCAATTGATGACATTATTACAGAAGACACACATGTACAAGGTAGAGCTACTCCAACACGACCAAAACGACAAGAACGAAGGCTTTCGTCTACAACACAAAACCAAACGACAATCAAAAACCTCAAAAACGTACGAAGTTCATATGATCCTATAGTTGGAATGTCTATACTAGTTGTGACCTTAGTGATAATGATATTTTGGGGTCGTTTTTGTGCCATTCTATGTACTTCAGCTTGGTTGTATTTTATACCACGTTTTAGAAATAGTGGTGTTGGAAATTATGAGGAAGATGGTGCCAAAATTATGTCAAAGAATGATGTGGATTTTGATTCTGAGGAGTATAAGAAAAAAGTGATTATGGAAGGACTTCTTGGGAGAAATAATCGAGGTAGTCACTTATGA

Protein sequence

>Msa0014280

MAKTKNSKSKTSIFLCCFRSHMPNKPSTNDSSNVKESNPIPKQKKSSWFSWRWIKMKMKSTSKTVPLEASFSHYSKSRSKFLTLHHKSKKTLPTNPPPSIPPSTVVLPGTPYYTPTQTRHGPIDDIITEDTHVQGRATPTRPKRQERRLSSTTQNQTTIKNLKNVRSSYDPIVGMSILVVTLVIMIFWGRFCAILCTSAWLYFIPRFRNSGVGNYEEDGAKIMSKNDVDFDSEEYKKKVIMEGLLGRNNRGSHL*