AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1259030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259030 MtrunA17_Chr4g0058311 97.596 208 3 1 1 208 1 206 5.22e-152 419
Msa1259030 MtrunA17_Chr4g0058331 97.115 208 4 1 1 208 1 206 7.41e-152 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259030 AT5G50200.1 51.185 211 90 6 1 204 1 205 1.60e-64 199
Msa1259030 AT5G50200.3 51.185 211 90 6 1 204 1 205 1.60e-64 199
Msa1259030 AT5G50200.2 51.185 211 90 6 1 204 1 205 1.60e-64 199
Msa1259030 AT4G24715.1 50.239 209 94 6 1 204 23 226 2.80e-63 196

Find 64 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGCACAACTTCAGCTTTA+TGG 0.134503 8_2:+60434834 None:intergenic
AAAATTTATGTCATAGAAAT+AGG 0.214599 8_2:-60434214 Msa1259030:three_prime_UTR
ATCTACGCAGTTCTGTTATC+TGG 0.302271 8_2:-60434928 Msa1259030:intron
CTATAGCTCCTATGACTATA+TGG 0.312141 8_2:-60434284 Msa1259030:three_prime_UTR
ACTTACCTTGTCCCTGCTTA+GGG 0.312527 8_2:+60435481 None:intergenic
TTATGCCTTATATATGTTGT+AGG 0.313435 8_2:-60434370 Msa1259030:three_prime_UTR
AGAGAAAAGCCAATTGGAAT+TGG 0.326415 8_2:+60435657 None:intergenic
TACTTACCTTGTCCCTGCTT+AGG 0.355450 8_2:+60435480 None:intergenic
TGTTTAGCTGAACTTTGTTA+TGG 0.379387 8_2:-60435552 Msa1259030:CDS
ACTGAATTCAATTACTGCTT+TGG 0.387524 8_2:+60434433 None:intergenic
CCAGGCCTACAACATATATA+AGG 0.400830 8_2:+60434365 None:intergenic
AACGATAAGGAAGTGGCTTA+TGG 0.411170 8_2:-60434619 Msa1259030:CDS
TAGGGGAAGCTGTGACTTCA+AGG 0.413086 8_2:+60435499 None:intergenic
TGCATTTGATTCCAACGATA+AGG 0.421816 8_2:-60434632 Msa1259030:CDS
AATATCATTCCAATTCCAAT+TGG 0.435193 8_2:-60435666 Msa1259030:five_prime_UTR
CAGTGACATAGGAAACTTCA+TGG 0.450404 8_2:-60434414 Msa1259030:three_prime_UTR
AGTGAAAACCATATAGTCAT+AGG 0.457048 8_2:+60434276 None:intergenic
GCTTTCTCAGTTGTGTCCCT+AGG 0.459425 8_2:-60434493 Msa1259030:CDS
AGTCACAGCTTCCCCTAAGC+AGG 0.463378 8_2:-60435493 Msa1259030:CDS
CCTTATATATGTTGTAGGCC+TGG 0.464256 8_2:-60434365 Msa1259030:three_prime_UTR
GGTACTCTTACCCGCGTTCG+TGG 0.464298 8_2:+60434591 None:intergenic
GACTTCAGAGAAAAGCCAAT+TGG 0.464343 8_2:+60435651 None:intergenic
AAAGAAAAGTCAACTGTGAA+AGG 0.477653 8_2:+60435623 None:intergenic
AGCTGAACTTTGTTATGGAA+AGG 0.496120 8_2:-60435547 Msa1259030:CDS
ATAAGCCACTTCCTTATCGT+TGG 0.499427 8_2:+60434621 None:intergenic
GTAATTGAATTCAGTGACAT+AGG 0.512101 8_2:-60434425 Msa1259030:exon
AGACCGAGGATGAACTCTCT+AGG 0.513840 8_2:-60434777 Msa1259030:CDS
TATGATGAGTCTGTTCCAGC+TGG 0.517572 8_2:+60434862 None:intergenic
ATGTCATAGAAATAGGAGTC+AGG 0.520060 8_2:-60434207 Msa1259030:three_prime_UTR
TGATTCCAACGATAAGGAAG+TGG 0.521314 8_2:-60434626 Msa1259030:CDS
CTAAACAAGACCTTCCCAGC+TGG 0.523958 8_2:-60434877 Msa1259030:CDS
GTTGGAAGCATTGTAGGGCA+TGG 0.526614 8_2:+60434726 None:intergenic
AAGAAAAGTCAACTGTGAAA+GGG 0.535727 8_2:+60435624 None:intergenic
TGAGTCTGTTCCAGCTGGGA+AGG 0.539300 8_2:+60434867 None:intergenic
TGCGTTGATCTCAAACAAGT+TGG 0.539862 8_2:+60434564 None:intergenic
CTACAATGCTTCCAACAAAA+CGG 0.541838 8_2:-60434719 Msa1259030:CDS
GTCCCTAGAGAGTTCATCCT+CGG 0.558273 8_2:+60434774 None:intergenic
TAGACAAAATCAGTGGAACA+TGG 0.559795 8_2:-60434903 Msa1259030:CDS
GACCGAGGATGAACTCTCTA+GGG 0.561011 8_2:-60434776 Msa1259030:CDS
AGGGGAAGCTGTGACTTCAA+GGG 0.577454 8_2:+60435500 None:intergenic
CTTACCTTGTCCCTGCTTAG+GGG 0.578473 8_2:+60435482 None:intergenic
GATCTCAAACAAGTTGGTAG+TGG 0.584307 8_2:+60434570 None:intergenic
ACTGATAATATTATTTAACC+AGG 0.587057 8_2:+60434347 None:intergenic
CAATATAGAAGAACACACCT+AGG 0.601286 8_2:+60434476 None:intergenic
TTTGAGATCAACGCAATCAG+TGG 0.604199 8_2:-60434556 Msa1259030:CDS
AGACAAAATCAGTGGAACAT+GGG 0.618150 8_2:-60434902 Msa1259030:CDS
ATCGTTGGAATCAAATGCAT+AGG 0.623735 8_2:+60434636 None:intergenic
GTCACAGCTTCCCCTAAGCA+GGG 0.629784 8_2:-60435492 Msa1259030:CDS
TATGGCCAAACCACGAACGC+GGG 0.634750 8_2:-60434601 Msa1259030:CDS
TTATGGCCAAACCACGAACG+CGG 0.634987 8_2:-60434602 Msa1259030:CDS
GCTTCCCCTAAGCAGGGACA+AGG 0.636634 8_2:-60435486 Msa1259030:intron
GCGCTGAATCAACCACTCGA+AGG 0.649799 8_2:+60434690 None:intergenic
CCTCGGTCTTTCTCCAAGCG+CGG 0.651070 8_2:+60434791 None:intergenic
AATATAGAAGAACACACCTA+GGG 0.653049 8_2:+60434477 None:intergenic
TATGGCAGCACACAAGCTTG+TGG 0.654698 8_2:-60435595 Msa1259030:CDS
TCTGGAGTAGACAAAATCAG+TGG 0.660740 8_2:-60434910 Msa1259030:CDS
TGAGAAAGCACTGAAGACAA+CGG 0.661115 8_2:+60434507 None:intergenic
AAACGGTTCAAACCTTCGAG+TGG 0.663100 8_2:-60434702 Msa1259030:CDS
CGTACAAAGTACGTTGCCTG+AGG 0.678441 8_2:+60434661 None:intergenic
AGCAGATATCAAGAGTCGCG+TGG 0.681698 8_2:+60434530 None:intergenic
ATGATGAGTCTGTTCCAGCT+GGG 0.682275 8_2:+60434863 None:intergenic
AGATATCAAGAGTCGCGTGG+CGG 0.700580 8_2:+60434533 None:intergenic
CCGCGCTTGGAGAAAGACCG+AGG 0.703551 8_2:-60434791 Msa1259030:CDS
AAAGCTGAAGTTGTGCTACG+CGG 0.733243 8_2:-60434830 Msa1259030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAGACATTTATTTATTA+AGG + chr8_2:60434776-60434795 None:intergenic 15.0%
!! AAAATTTATGTCATAGAAAT+AGG - chr8_2:60435600-60435619 Msa1259030:exon 15.0%
!! GATAAGACATTTATTTATTA+AGG + chr8_2:60434776-60434795 None:intergenic 15.0%
!! AAAATTTATGTCATAGAAAT+AGG - chr8_2:60435600-60435619 Msa1259030:exon 15.0%
!! TTATTCAAATTCAAGAAAAG+AGG + chr8_2:60434570-60434589 None:intergenic 20.0%
!!! GAACATTTTTCAAGAAAATT+TGG - chr8_2:60434606-60434625 Msa1259030:CDS 20.0%
!! TGTTCTTCTATATTGAAAAA+AGG - chr8_2:60435346-60435365 Msa1259030:intron 20.0%
!! TTCTATATTGAAAAAAGGAA+GGG - chr8_2:60435351-60435370 Msa1259030:intron 20.0%
!! ACTGATAATATTATTTAACC+AGG + chr8_2:60435470-60435489 None:intergenic 20.0%
!! CATGAAATATGAAAAACTTA+GGG + chr8_2:60435504-60435523 None:intergenic 20.0%
!!! ATATTATTCTGAAAAGAATC+TGG + chr8_2:60434133-60434152 None:intergenic 20.0%
!! TTATTCAAATTCAAGAAAAG+AGG + chr8_2:60434570-60434589 None:intergenic 20.0%
!!! GAACATTTTTCAAGAAAATT+TGG - chr8_2:60434606-60434625 Msa1259030:CDS 20.0%
!! TGTTCTTCTATATTGAAAAA+AGG - chr8_2:60435346-60435365 Msa1259030:intron 20.0%
!! TTCTATATTGAAAAAAGGAA+GGG - chr8_2:60435351-60435370 Msa1259030:intron 20.0%
!! ACTGATAATATTATTTAACC+AGG + chr8_2:60435470-60435489 None:intergenic 20.0%
!! CATGAAATATGAAAAACTTA+GGG + chr8_2:60435504-60435523 None:intergenic 20.0%
! AATATCATTCCAATTCCAAT+TGG - chr8_2:60434148-60434167 Msa1259030:three_prime_UTR 25.0%
!!! TTGACTTTTCTTTAGAACTA+TGG - chr8_2:60434201-60434220 Msa1259030:three_prime_UTR 25.0%
! ATAATCACATAAATCAAGGT+TGG + chr8_2:60434540-60434559 None:intergenic 25.0%
! GAACATAATCACATAAATCA+AGG + chr8_2:60434544-60434563 None:intergenic 25.0%
! TTCTTGAAAAATGTTCATAC+TGG + chr8_2:60434602-60434621 None:intergenic 25.0%
! CTTAATAAATAGTAACACAC+CGG + chr8_2:60434648-60434667 None:intergenic 25.0%
! TACATTACAAATGATCACAA+AGG - chr8_2:60434700-60434719 Msa1259030:CDS 25.0%
! CAAGTATGCAATCATAATAT+AGG + chr8_2:60434798-60434817 None:intergenic 25.0%
!! AAGCTGATTAAACTCAATTT+TGG - chr8_2:60434855-60434874 Msa1259030:CDS 25.0%
! CTTCTATATTGAAAAAAGGA+AGG - chr8_2:60435350-60435369 Msa1259030:intron 25.0%
! TTATGCCTTATATATGTTGT+AGG - chr8_2:60435444-60435463 Msa1259030:intron 25.0%
! CCATGAAATATGAAAAACTT+AGG + chr8_2:60435505-60435524 None:intergenic 25.0%
!! CCTAAGTTTTTCATATTTCA+TGG - chr8_2:60435502-60435521 Msa1259030:CDS 25.0%
!! AGTTTTTCATATTTCATGGA+TGG - chr8_2:60435506-60435525 Msa1259030:CDS 25.0%
! AATATCATTCCAATTCCAAT+TGG - chr8_2:60434148-60434167 Msa1259030:three_prime_UTR 25.0%
!!! TTGACTTTTCTTTAGAACTA+TGG - chr8_2:60434201-60434220 Msa1259030:three_prime_UTR 25.0%
! ATAATCACATAAATCAAGGT+TGG + chr8_2:60434540-60434559 None:intergenic 25.0%
! GAACATAATCACATAAATCA+AGG + chr8_2:60434544-60434563 None:intergenic 25.0%
! TTCTTGAAAAATGTTCATAC+TGG + chr8_2:60434602-60434621 None:intergenic 25.0%
! CTTAATAAATAGTAACACAC+CGG + chr8_2:60434648-60434667 None:intergenic 25.0%
! TACATTACAAATGATCACAA+AGG - chr8_2:60434700-60434719 Msa1259030:CDS 25.0%
! CAAGTATGCAATCATAATAT+AGG + chr8_2:60434798-60434817 None:intergenic 25.0%
!! AAGCTGATTAAACTCAATTT+TGG - chr8_2:60434855-60434874 Msa1259030:CDS 25.0%
! CTTCTATATTGAAAAAAGGA+AGG - chr8_2:60435350-60435369 Msa1259030:intron 25.0%
! TTATGCCTTATATATGTTGT+AGG - chr8_2:60435444-60435463 Msa1259030:intron 25.0%
! CCATGAAATATGAAAAACTT+AGG + chr8_2:60435505-60435524 None:intergenic 25.0%
!! CCTAAGTTTTTCATATTTCA+TGG - chr8_2:60435502-60435521 Msa1259030:CDS 25.0%
!! AGTTTTTCATATTTCATGGA+TGG - chr8_2:60435506-60435525 Msa1259030:CDS 25.0%
AAGAAAAGTCAACTGTGAAA+GGG + chr8_2:60434193-60434212 None:intergenic 30.0%
AAAGAAAAGTCAACTGTGAA+AGG + chr8_2:60434194-60434213 None:intergenic 30.0%
TGTTTAGCTGAACTTTGTTA+TGG - chr8_2:60434262-60434281 Msa1259030:three_prime_UTR 30.0%
TCAAATTCAAGAAAAGAGGA+AGG + chr8_2:60434566-60434585 None:intergenic 30.0%
!!! TTTTTCAAGAAAATTTGGCC+AGG - chr8_2:60434611-60434630 Msa1259030:CDS 30.0%
! CGGTGTGTTACTATTTATTA+AGG - chr8_2:60434646-60434665 Msa1259030:CDS 30.0%
ATTGAGTTTAATCAGCTTGA+AGG + chr8_2:60434853-60434872 None:intergenic 30.0%
AATATAGAAGAACACACCTA+GGG + chr8_2:60435340-60435359 None:intergenic 30.0%
ACTGAATTCAATTACTGCTT+TGG + chr8_2:60435384-60435403 None:intergenic 30.0%
GTAATTGAATTCAGTGACAT+AGG - chr8_2:60435389-60435408 Msa1259030:intron 30.0%
AGTGAAAACCATATAGTCAT+AGG + chr8_2:60435541-60435560 None:intergenic 30.0%
AAGAAAAGTCAACTGTGAAA+GGG + chr8_2:60434193-60434212 None:intergenic 30.0%
AAAGAAAAGTCAACTGTGAA+AGG + chr8_2:60434194-60434213 None:intergenic 30.0%
TGTTTAGCTGAACTTTGTTA+TGG - chr8_2:60434262-60434281 Msa1259030:three_prime_UTR 30.0%
TCAAATTCAAGAAAAGAGGA+AGG + chr8_2:60434566-60434585 None:intergenic 30.0%
!!! TTTTTCAAGAAAATTTGGCC+AGG - chr8_2:60434611-60434630 Msa1259030:CDS 30.0%
! CGGTGTGTTACTATTTATTA+AGG - chr8_2:60434646-60434665 Msa1259030:CDS 30.0%
ATTGAGTTTAATCAGCTTGA+AGG + chr8_2:60434853-60434872 None:intergenic 30.0%
AATATAGAAGAACACACCTA+GGG + chr8_2:60435340-60435359 None:intergenic 30.0%
ACTGAATTCAATTACTGCTT+TGG + chr8_2:60435384-60435403 None:intergenic 30.0%
GTAATTGAATTCAGTGACAT+AGG - chr8_2:60435389-60435408 Msa1259030:intron 30.0%
AGTGAAAACCATATAGTCAT+AGG + chr8_2:60435541-60435560 None:intergenic 30.0%
AGAGAAAAGCCAATTGGAAT+TGG + chr8_2:60434160-60434179 None:intergenic 35.0%
! AGCTGAACTTTGTTATGGAA+AGG - chr8_2:60434267-60434286 Msa1259030:three_prime_UTR 35.0%
GAAAATTTGGCCAGGTTTAA+TGG - chr8_2:60434619-60434638 Msa1259030:CDS 35.0%
AAAAATTGCAACGCAACTTG+CGG + chr8_2:60434680-60434699 None:intergenic 35.0%
TAGACAAAATCAGTGGAACA+TGG - chr8_2:60434911-60434930 Msa1259030:CDS 35.0%
AGACAAAATCAGTGGAACAT+GGG - chr8_2:60434912-60434931 Msa1259030:CDS 35.0%
!!! GTTTTGTTGGAAGCATTGTA+GGG + chr8_2:60435096-60435115 None:intergenic 35.0%
CTACAATGCTTCCAACAAAA+CGG - chr8_2:60435095-60435114 Msa1259030:intron 35.0%
ATCGTTGGAATCAAATGCAT+AGG + chr8_2:60435181-60435200 None:intergenic 35.0%
TGCATTTGATTCCAACGATA+AGG - chr8_2:60435182-60435201 Msa1259030:intron 35.0%
CAATATAGAAGAACACACCT+AGG + chr8_2:60435341-60435360 None:intergenic 35.0%
CTATAGCTCCTATGACTATA+TGG - chr8_2:60435530-60435549 Msa1259030:CDS 35.0%
! ACTATATGGTTTTCACTCAC+TGG - chr8_2:60435544-60435563 Msa1259030:CDS 35.0%
ATGTCATAGAAATAGGAGTC+AGG - chr8_2:60435607-60435626 Msa1259030:exon 35.0%
AGAGAAAAGCCAATTGGAAT+TGG + chr8_2:60434160-60434179 None:intergenic 35.0%
! AGCTGAACTTTGTTATGGAA+AGG - chr8_2:60434267-60434286 Msa1259030:three_prime_UTR 35.0%
GAAAATTTGGCCAGGTTTAA+TGG - chr8_2:60434619-60434638 Msa1259030:CDS 35.0%
AAAAATTGCAACGCAACTTG+CGG + chr8_2:60434680-60434699 None:intergenic 35.0%
TAGACAAAATCAGTGGAACA+TGG - chr8_2:60434911-60434930 Msa1259030:CDS 35.0%
AGACAAAATCAGTGGAACAT+GGG - chr8_2:60434912-60434931 Msa1259030:CDS 35.0%
!!! GTTTTGTTGGAAGCATTGTA+GGG + chr8_2:60435096-60435115 None:intergenic 35.0%
CTACAATGCTTCCAACAAAA+CGG - chr8_2:60435095-60435114 Msa1259030:intron 35.0%
ATCGTTGGAATCAAATGCAT+AGG + chr8_2:60435181-60435200 None:intergenic 35.0%
TGCATTTGATTCCAACGATA+AGG - chr8_2:60435182-60435201 Msa1259030:intron 35.0%
CAATATAGAAGAACACACCT+AGG + chr8_2:60435341-60435360 None:intergenic 35.0%
CTATAGCTCCTATGACTATA+TGG - chr8_2:60435530-60435549 Msa1259030:CDS 35.0%
! ACTATATGGTTTTCACTCAC+TGG - chr8_2:60435544-60435563 Msa1259030:CDS 35.0%
ATGTCATAGAAATAGGAGTC+AGG - chr8_2:60435607-60435626 Msa1259030:exon 35.0%
GACTTCAGAGAAAAGCCAAT+TGG + chr8_2:60434166-60434185 None:intergenic 40.0%
ATCTACGCAGTTCTGTTATC+TGG - chr8_2:60434886-60434905 Msa1259030:CDS 40.0%
! TCTGGAGTAGACAAAATCAG+TGG - chr8_2:60434904-60434923 Msa1259030:CDS 40.0%
GTAGCACAACTTCAGCTTTA+TGG + chr8_2:60434983-60435002 None:intergenic 40.0%
! GCATGGCTAACATTTTGTGT+TGG + chr8_2:60435074-60435093 None:intergenic 40.0%
!!! CGTTTTGTTGGAAGCATTGT+AGG + chr8_2:60435097-60435116 None:intergenic 40.0%
! GAAGGTTTGAACCGTTTTGT+TGG + chr8_2:60435109-60435128 None:intergenic 40.0%
TGATTCCAACGATAAGGAAG+TGG - chr8_2:60435188-60435207 Msa1259030:intron 40.0%
ATAAGCCACTTCCTTATCGT+TGG + chr8_2:60435196-60435215 None:intergenic 40.0%
AACGATAAGGAAGTGGCTTA+TGG - chr8_2:60435195-60435214 Msa1259030:intron 40.0%
!! GATCTCAAACAAGTTGGTAG+TGG + chr8_2:60435247-60435266 None:intergenic 40.0%
! TGCGTTGATCTCAAACAAGT+TGG + chr8_2:60435253-60435272 None:intergenic 40.0%
! TTTGAGATCAACGCAATCAG+TGG - chr8_2:60435258-60435277 Msa1259030:intron 40.0%
!! TGAGAAAGCACTGAAGACAA+CGG + chr8_2:60435310-60435329 None:intergenic 40.0%
CAGTGACATAGGAAACTTCA+TGG - chr8_2:60435400-60435419 Msa1259030:intron 40.0%
CCAGGCCTACAACATATATA+AGG + chr8_2:60435452-60435471 None:intergenic 40.0%
CCTTATATATGTTGTAGGCC+TGG - chr8_2:60435449-60435468 Msa1259030:intron 40.0%
GACTTCAGAGAAAAGCCAAT+TGG + chr8_2:60434166-60434185 None:intergenic 40.0%
ATCTACGCAGTTCTGTTATC+TGG - chr8_2:60434886-60434905 Msa1259030:CDS 40.0%
! TCTGGAGTAGACAAAATCAG+TGG - chr8_2:60434904-60434923 Msa1259030:CDS 40.0%
GTAGCACAACTTCAGCTTTA+TGG + chr8_2:60434983-60435002 None:intergenic 40.0%
! GCATGGCTAACATTTTGTGT+TGG + chr8_2:60435074-60435093 None:intergenic 40.0%
!!! CGTTTTGTTGGAAGCATTGT+AGG + chr8_2:60435097-60435116 None:intergenic 40.0%
! GAAGGTTTGAACCGTTTTGT+TGG + chr8_2:60435109-60435128 None:intergenic 40.0%
TGATTCCAACGATAAGGAAG+TGG - chr8_2:60435188-60435207 Msa1259030:intron 40.0%
ATAAGCCACTTCCTTATCGT+TGG + chr8_2:60435196-60435215 None:intergenic 40.0%
AACGATAAGGAAGTGGCTTA+TGG - chr8_2:60435195-60435214 Msa1259030:intron 40.0%
!! GATCTCAAACAAGTTGGTAG+TGG + chr8_2:60435247-60435266 None:intergenic 40.0%
! TGCGTTGATCTCAAACAAGT+TGG + chr8_2:60435253-60435272 None:intergenic 40.0%
! TTTGAGATCAACGCAATCAG+TGG - chr8_2:60435258-60435277 Msa1259030:intron 40.0%
!! TGAGAAAGCACTGAAGACAA+CGG + chr8_2:60435310-60435329 None:intergenic 40.0%
CAGTGACATAGGAAACTTCA+TGG - chr8_2:60435400-60435419 Msa1259030:intron 40.0%
CCAGGCCTACAACATATATA+AGG + chr8_2:60435452-60435471 None:intergenic 40.0%
CCTTATATATGTTGTAGGCC+TGG - chr8_2:60435449-60435468 Msa1259030:intron 40.0%
ACTTACCTTGTCCCTGCTTA+GGG + chr8_2:60434336-60434355 None:intergenic 45.0%
TACTTACCTTGTCCCTGCTT+AGG + chr8_2:60434337-60434356 None:intergenic 45.0%
ATGATGAGTCTGTTCCAGCT+GGG + chr8_2:60434954-60434973 None:intergenic 45.0%
TATGATGAGTCTGTTCCAGC+TGG + chr8_2:60434955-60434974 None:intergenic 45.0%
AAAGCTGAAGTTGTGCTACG+CGG - chr8_2:60434984-60435003 Msa1259030:intron 45.0%
AAACGGTTCAAACCTTCGAG+TGG - chr8_2:60435112-60435131 Msa1259030:intron 45.0%
ACTTACCTTGTCCCTGCTTA+GGG + chr8_2:60434336-60434355 None:intergenic 45.0%
TACTTACCTTGTCCCTGCTT+AGG + chr8_2:60434337-60434356 None:intergenic 45.0%
ATGATGAGTCTGTTCCAGCT+GGG + chr8_2:60434954-60434973 None:intergenic 45.0%
TATGATGAGTCTGTTCCAGC+TGG + chr8_2:60434955-60434974 None:intergenic 45.0%
AAAGCTGAAGTTGTGCTACG+CGG - chr8_2:60434984-60435003 Msa1259030:intron 45.0%
AAACGGTTCAAACCTTCGAG+TGG - chr8_2:60435112-60435131 Msa1259030:intron 45.0%
TATGGCAGCACACAAGCTTG+TGG - chr8_2:60434219-60434238 Msa1259030:three_prime_UTR 50.0%
AGGGGAAGCTGTGACTTCAA+GGG + chr8_2:60434317-60434336 None:intergenic 50.0%
TAGGGGAAGCTGTGACTTCA+AGG + chr8_2:60434318-60434337 None:intergenic 50.0%
CTTACCTTGTCCCTGCTTAG+GGG + chr8_2:60434335-60434354 None:intergenic 50.0%
TGGCCAGGTTTAATGGAGTC+CGG - chr8_2:60434626-60434645 Msa1259030:CDS 50.0%
ACACCGGACTCCATTAAACC+TGG + chr8_2:60434632-60434651 None:intergenic 50.0%
CTAAACAAGACCTTCCCAGC+TGG - chr8_2:60434937-60434956 Msa1259030:intron 50.0%
!!! AGCGCGGTCTTTTTGGCTTA+TGG + chr8_2:60435010-60435029 None:intergenic 50.0%
TAAGCCAAAAAGACCGCGCT+TGG - chr8_2:60435010-60435029 Msa1259030:intron 50.0%
! TTCTCCAAGCGCGGTCTTTT+TGG + chr8_2:60435017-60435036 None:intergenic 50.0%
AGACCGAGGATGAACTCTCT+AGG - chr8_2:60435037-60435056 Msa1259030:intron 50.0%
GACCGAGGATGAACTCTCTA+GGG - chr8_2:60435038-60435057 Msa1259030:intron 50.0%
GTCCCTAGAGAGTTCATCCT+CGG + chr8_2:60435043-60435062 None:intergenic 50.0%
!! GTTGGAAGCATTGTAGGGCA+TGG + chr8_2:60435091-60435110 None:intergenic 50.0%
CGTACAAAGTACGTTGCCTG+AGG + chr8_2:60435156-60435175 None:intergenic 50.0%
TTATGGCCAAACCACGAACG+CGG - chr8_2:60435212-60435231 Msa1259030:intron 50.0%
AGATATCAAGAGTCGCGTGG+CGG + chr8_2:60435284-60435303 None:intergenic 50.0%
AGCAGATATCAAGAGTCGCG+TGG + chr8_2:60435287-60435306 None:intergenic 50.0%
GCTTTCTCAGTTGTGTCCCT+AGG - chr8_2:60435321-60435340 Msa1259030:intron 50.0%
TATGGCAGCACACAAGCTTG+TGG - chr8_2:60434219-60434238 Msa1259030:three_prime_UTR 50.0%
AGGGGAAGCTGTGACTTCAA+GGG + chr8_2:60434317-60434336 None:intergenic 50.0%
TAGGGGAAGCTGTGACTTCA+AGG + chr8_2:60434318-60434337 None:intergenic 50.0%
CTTACCTTGTCCCTGCTTAG+GGG + chr8_2:60434335-60434354 None:intergenic 50.0%
TGGCCAGGTTTAATGGAGTC+CGG - chr8_2:60434626-60434645 Msa1259030:CDS 50.0%
ACACCGGACTCCATTAAACC+TGG + chr8_2:60434632-60434651 None:intergenic 50.0%
CTAAACAAGACCTTCCCAGC+TGG - chr8_2:60434937-60434956 Msa1259030:intron 50.0%
!!! AGCGCGGTCTTTTTGGCTTA+TGG + chr8_2:60435010-60435029 None:intergenic 50.0%
TAAGCCAAAAAGACCGCGCT+TGG - chr8_2:60435010-60435029 Msa1259030:intron 50.0%
! TTCTCCAAGCGCGGTCTTTT+TGG + chr8_2:60435017-60435036 None:intergenic 50.0%
AGACCGAGGATGAACTCTCT+AGG - chr8_2:60435037-60435056 Msa1259030:intron 50.0%
GACCGAGGATGAACTCTCTA+GGG - chr8_2:60435038-60435057 Msa1259030:intron 50.0%
GTCCCTAGAGAGTTCATCCT+CGG + chr8_2:60435043-60435062 None:intergenic 50.0%
!! GTTGGAAGCATTGTAGGGCA+TGG + chr8_2:60435091-60435110 None:intergenic 50.0%
CGTACAAAGTACGTTGCCTG+AGG + chr8_2:60435156-60435175 None:intergenic 50.0%
TTATGGCCAAACCACGAACG+CGG - chr8_2:60435212-60435231 Msa1259030:intron 50.0%
AGATATCAAGAGTCGCGTGG+CGG + chr8_2:60435284-60435303 None:intergenic 50.0%
AGCAGATATCAAGAGTCGCG+TGG + chr8_2:60435287-60435306 None:intergenic 50.0%
GCTTTCTCAGTTGTGTCCCT+AGG - chr8_2:60435321-60435340 Msa1259030:intron 50.0%
AGTCACAGCTTCCCCTAAGC+AGG - chr8_2:60434321-60434340 Msa1259030:three_prime_UTR 55.0%
GTCACAGCTTCCCCTAAGCA+GGG - chr8_2:60434322-60434341 Msa1259030:three_prime_UTR 55.0%
TGAGTCTGTTCCAGCTGGGA+AGG + chr8_2:60434950-60434969 None:intergenic 55.0%
GCGCTGAATCAACCACTCGA+AGG + chr8_2:60435127-60435146 None:intergenic 55.0%
TATGGCCAAACCACGAACGC+GGG - chr8_2:60435213-60435232 Msa1259030:intron 55.0%
TCTTACCCGCGTTCGTGGTT+TGG + chr8_2:60435221-60435240 None:intergenic 55.0%
AGTCACAGCTTCCCCTAAGC+AGG - chr8_2:60434321-60434340 Msa1259030:three_prime_UTR 55.0%
GTCACAGCTTCCCCTAAGCA+GGG - chr8_2:60434322-60434341 Msa1259030:three_prime_UTR 55.0%
TGAGTCTGTTCCAGCTGGGA+AGG + chr8_2:60434950-60434969 None:intergenic 55.0%
GCGCTGAATCAACCACTCGA+AGG + chr8_2:60435127-60435146 None:intergenic 55.0%
TATGGCCAAACCACGAACGC+GGG - chr8_2:60435213-60435232 Msa1259030:intron 55.0%
TCTTACCCGCGTTCGTGGTT+TGG + chr8_2:60435221-60435240 None:intergenic 55.0%
GCTTCCCCTAAGCAGGGACA+AGG - chr8_2:60434328-60434347 Msa1259030:three_prime_UTR 60.0%
CCTCGGTCTTTCTCCAAGCG+CGG + chr8_2:60435026-60435045 None:intergenic 60.0%
GGTACTCTTACCCGCGTTCG+TGG + chr8_2:60435226-60435245 None:intergenic 60.0%
GCTTCCCCTAAGCAGGGACA+AGG - chr8_2:60434328-60434347 Msa1259030:three_prime_UTR 60.0%
CCTCGGTCTTTCTCCAAGCG+CGG + chr8_2:60435026-60435045 None:intergenic 60.0%
GGTACTCTTACCCGCGTTCG+TGG + chr8_2:60435226-60435245 None:intergenic 60.0%
CCGCGCTTGGAGAAAGACCG+AGG - chr8_2:60435023-60435042 Msa1259030:intron 65.0%
GATTCAGCGCGACGTGCCTC+AGG - chr8_2:60435137-60435156 Msa1259030:intron 65.0%
CCGCGCTTGGAGAAAGACCG+AGG - chr8_2:60435023-60435042 Msa1259030:intron 65.0%
GATTCAGCGCGACGTGCCTC+AGG - chr8_2:60435137-60435156 Msa1259030:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 60434132 60435704 60434132 ID=Msa1259030;Name=Msa1259030
chr8_2 mRNA 60434132 60435704 60434132 ID=Msa1259030-mRNA-1;Parent=Msa1259030;Name=Msa1259030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=88|1|1|1|1|1|2|312|208
chr8_2 exon 60434132 60434940 60434132 ID=Msa1259030-mRNA-1:exon:18951;Parent=Msa1259030-mRNA-1
chr8_2 exon 60435487 60435704 60435487 ID=Msa1259030-mRNA-1:exon:18950;Parent=Msa1259030-mRNA-1
chr8_2 five_prime_UTR 60435617 60435704 60435617 ID=Msa1259030-mRNA-1:five_prime_utr;Parent=Msa1259030-mRNA-1
chr8_2 CDS 60435487 60435616 60435487 ID=Msa1259030-mRNA-1:cds;Parent=Msa1259030-mRNA-1
chr8_2 CDS 60434444 60434940 60434444 ID=Msa1259030-mRNA-1:cds;Parent=Msa1259030-mRNA-1
chr8_2 three_prime_UTR 60434132 60434443 60434132 ID=Msa1259030-mRNA-1:three_prime_utr;Parent=Msa1259030-mRNA-1
Gene Sequence

>Msa1259030

ATGGCAGCACACAAGCTTGTGGTAGCATCACTTCTTCTATGCTGTTTAGCTGAACTTTGTTATGGAAAGGATCTCTTTTCTTCTTTGAAAAGAACCCTTGAAGTCACAGCTTCCCCTAAGCAGGGACAAGTTCTGTTATCTGGAGTAGACAAAATCAGTGGAACATGGGCTCTAAACAAGACCTTCCCAGCTGGAACAGACTCATCATACAAAACCATAAAGCTGAAGTTGTGCTACGCGGCCATAAGCCAAAAAGACCGCGCTTGGAGAAAGACCGAGGATGAACTCTCTAGGGACAAGACTTGCCAACACAAAATGTTAGCCATGCCCTACAATGCTTCCAACAAAACGGTTCAAACCTTCGAGTGGTTGATTCAGCGCGACGTGCCTCAGGCAACGTACTTTGTACGCGCCTATGCATTTGATTCCAACGATAAGGAAGTGGCTTATGGCCAAACCACGAACGCGGGTAAGAGTACCACTACCAACTTGTTTGAGATCAACGCAATCAGTGGCCGCCACGCGACTCTTGATATCTGCTCCGTTGTCTTCAGTGCTTTCTCAGTTGTGTCCCTAGGTGTGTTCTTCTATATTGAAAAAAGGAAGGGAAAGTCACCAAAGCAGTAA

Protein sequence

>Msa1259030

MAAHKLVVASLLLCCLAELCYGKDLFSSLKRTLEVTASPKQGQVLLSGVDKISGTWALNKTFPAGTDSSYKTIKLKLCYAAISQKDRAWRKTEDELSRDKTCQHKMLAMPYNASNKTVQTFEWLIQRDVPQATYFVRAYAFDSNDKEVAYGQTTNAGKSTTTNLFEINAISGRHATLDICSVVFSAFSVVSLGVFFYIEKRKGKSPKQ*