AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1245890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1245890 MtrunA17_Chr4g0058311 97.596 208 3 1 1 208 1 206 5.22e-152 419
Msa1245890 MtrunA17_Chr4g0058331 97.115 208 4 1 1 208 1 206 7.41e-152 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1245890 AT5G50200.1 51.185 211 90 6 1 204 1 205 1.60e-64 199
Msa1245890 AT5G50200.3 51.185 211 90 6 1 204 1 205 1.60e-64 199
Msa1245890 AT5G50200.2 51.185 211 90 6 1 204 1 205 1.60e-64 199
Msa1245890 AT4G24715.1 50.239 209 94 6 1 204 23 226 2.80e-63 196

Find 64 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGCACAACTTCAGCTTTA+TGG 0.134503 8_2:+36151018 None:intergenic
AAAATTTATGTCATAGAAAT+AGG 0.214599 8_2:-36150398 Msa1245890:three_prime_UTR
ATCTACGCAGTTCTGTTATC+TGG 0.302271 8_2:-36151112 Msa1245890:intron
CTATAGCTCCTATGACTATA+TGG 0.312141 8_2:-36150468 Msa1245890:three_prime_UTR
ACTTACCTTGTCCCTGCTTA+GGG 0.312527 8_2:+36151665 None:intergenic
TTATGCCTTATATATGTTGT+AGG 0.313435 8_2:-36150554 Msa1245890:three_prime_UTR
AGAGAAAAGCCAATTGGAAT+TGG 0.326415 8_2:+36151841 None:intergenic
TACTTACCTTGTCCCTGCTT+AGG 0.355450 8_2:+36151664 None:intergenic
TGTTTAGCTGAACTTTGTTA+TGG 0.379387 8_2:-36151736 Msa1245890:CDS
ACTGAATTCAATTACTGCTT+TGG 0.387524 8_2:+36150617 None:intergenic
CCAGGCCTACAACATATATA+AGG 0.400830 8_2:+36150549 None:intergenic
AACGATAAGGAAGTGGCTTA+TGG 0.411170 8_2:-36150803 Msa1245890:CDS
TAGGGGAAGCTGTGACTTCA+AGG 0.413086 8_2:+36151683 None:intergenic
TGCATTTGATTCCAACGATA+AGG 0.421816 8_2:-36150816 Msa1245890:CDS
AATATCATTCCAATTCCAAT+TGG 0.435193 8_2:-36151850 Msa1245890:five_prime_UTR
CAGTGACATAGGAAACTTCA+TGG 0.450404 8_2:-36150598 Msa1245890:three_prime_UTR
AGTGAAAACCATATAGTCAT+AGG 0.457048 8_2:+36150460 None:intergenic
GCTTTCTCAGTTGTGTCCCT+AGG 0.459425 8_2:-36150677 Msa1245890:CDS
AGTCACAGCTTCCCCTAAGC+AGG 0.463378 8_2:-36151677 Msa1245890:CDS
CCTTATATATGTTGTAGGCC+TGG 0.464256 8_2:-36150549 Msa1245890:three_prime_UTR
GGTACTCTTACCCGCGTTCG+TGG 0.464298 8_2:+36150775 None:intergenic
GACTTCAGAGAAAAGCCAAT+TGG 0.464343 8_2:+36151835 None:intergenic
AAAGAAAAGTCAACTGTGAA+AGG 0.477653 8_2:+36151807 None:intergenic
AGCTGAACTTTGTTATGGAA+AGG 0.496120 8_2:-36151731 Msa1245890:CDS
ATAAGCCACTTCCTTATCGT+TGG 0.499427 8_2:+36150805 None:intergenic
GTAATTGAATTCAGTGACAT+AGG 0.512101 8_2:-36150609 Msa1245890:exon
AGACCGAGGATGAACTCTCT+AGG 0.513840 8_2:-36150961 Msa1245890:CDS
TATGATGAGTCTGTTCCAGC+TGG 0.517572 8_2:+36151046 None:intergenic
ATGTCATAGAAATAGGAGTC+AGG 0.520060 8_2:-36150391 Msa1245890:three_prime_UTR
TGATTCCAACGATAAGGAAG+TGG 0.521314 8_2:-36150810 Msa1245890:CDS
CTAAACAAGACCTTCCCAGC+TGG 0.523958 8_2:-36151061 Msa1245890:CDS
GTTGGAAGCATTGTAGGGCA+TGG 0.526614 8_2:+36150910 None:intergenic
AAGAAAAGTCAACTGTGAAA+GGG 0.535727 8_2:+36151808 None:intergenic
TGAGTCTGTTCCAGCTGGGA+AGG 0.539300 8_2:+36151051 None:intergenic
TGCGTTGATCTCAAACAAGT+TGG 0.539862 8_2:+36150748 None:intergenic
CTACAATGCTTCCAACAAAA+CGG 0.541838 8_2:-36150903 Msa1245890:CDS
GTCCCTAGAGAGTTCATCCT+CGG 0.558273 8_2:+36150958 None:intergenic
TAGACAAAATCAGTGGAACA+TGG 0.559795 8_2:-36151087 Msa1245890:CDS
GACCGAGGATGAACTCTCTA+GGG 0.561011 8_2:-36150960 Msa1245890:CDS
AGGGGAAGCTGTGACTTCAA+GGG 0.577454 8_2:+36151684 None:intergenic
CTTACCTTGTCCCTGCTTAG+GGG 0.578473 8_2:+36151666 None:intergenic
GATCTCAAACAAGTTGGTAG+TGG 0.584307 8_2:+36150754 None:intergenic
ACTGATAATATTATTTAACC+AGG 0.587057 8_2:+36150531 None:intergenic
CAATATAGAAGAACACACCT+AGG 0.601286 8_2:+36150660 None:intergenic
TTTGAGATCAACGCAATCAG+TGG 0.604199 8_2:-36150740 Msa1245890:CDS
AGACAAAATCAGTGGAACAT+GGG 0.618150 8_2:-36151086 Msa1245890:CDS
ATCGTTGGAATCAAATGCAT+AGG 0.623735 8_2:+36150820 None:intergenic
GTCACAGCTTCCCCTAAGCA+GGG 0.629784 8_2:-36151676 Msa1245890:CDS
TATGGCCAAACCACGAACGC+GGG 0.634750 8_2:-36150785 Msa1245890:CDS
TTATGGCCAAACCACGAACG+CGG 0.634987 8_2:-36150786 Msa1245890:CDS
GCTTCCCCTAAGCAGGGACA+AGG 0.636634 8_2:-36151670 Msa1245890:intron
GCGCTGAATCAACCACTCGA+AGG 0.649799 8_2:+36150874 None:intergenic
CCTCGGTCTTTCTCCAAGCG+CGG 0.651070 8_2:+36150975 None:intergenic
AATATAGAAGAACACACCTA+GGG 0.653049 8_2:+36150661 None:intergenic
TATGGCAGCACACAAGCTTG+TGG 0.654698 8_2:-36151779 Msa1245890:CDS
TCTGGAGTAGACAAAATCAG+TGG 0.660740 8_2:-36151094 Msa1245890:CDS
TGAGAAAGCACTGAAGACAA+CGG 0.661115 8_2:+36150691 None:intergenic
AAACGGTTCAAACCTTCGAG+TGG 0.663100 8_2:-36150886 Msa1245890:CDS
CGTACAAAGTACGTTGCCTG+AGG 0.678441 8_2:+36150845 None:intergenic
AGCAGATATCAAGAGTCGCG+TGG 0.681698 8_2:+36150714 None:intergenic
ATGATGAGTCTGTTCCAGCT+GGG 0.682275 8_2:+36151047 None:intergenic
AGATATCAAGAGTCGCGTGG+CGG 0.700580 8_2:+36150717 None:intergenic
CCGCGCTTGGAGAAAGACCG+AGG 0.703551 8_2:-36150975 Msa1245890:CDS
AAAGCTGAAGTTGTGCTACG+CGG 0.733243 8_2:-36151014 Msa1245890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAGACATTTATTTATTA+AGG + chr8_2:36150960-36150979 None:intergenic 15.0%
!! AAAATTTATGTCATAGAAAT+AGG - chr8_2:36151784-36151803 Msa1245890:exon 15.0%
!! GATAAGACATTTATTTATTA+AGG + chr8_2:36150960-36150979 None:intergenic 15.0%
!! AAAATTTATGTCATAGAAAT+AGG - chr8_2:36151784-36151803 Msa1245890:exon 15.0%
!! TTATTCAAATTCAAGAAAAG+AGG + chr8_2:36150754-36150773 None:intergenic 20.0%
!!! GAACATTTTTCAAGAAAATT+TGG - chr8_2:36150790-36150809 Msa1245890:CDS 20.0%
!! TGTTCTTCTATATTGAAAAA+AGG - chr8_2:36151530-36151549 Msa1245890:intron 20.0%
!! TTCTATATTGAAAAAAGGAA+GGG - chr8_2:36151535-36151554 Msa1245890:intron 20.0%
!! ACTGATAATATTATTTAACC+AGG + chr8_2:36151654-36151673 None:intergenic 20.0%
!! CATGAAATATGAAAAACTTA+GGG + chr8_2:36151688-36151707 None:intergenic 20.0%
!!! ATATTATTCTGAAAAGAATC+TGG + chr8_2:36150317-36150336 None:intergenic 20.0%
!! TTATTCAAATTCAAGAAAAG+AGG + chr8_2:36150754-36150773 None:intergenic 20.0%
!!! GAACATTTTTCAAGAAAATT+TGG - chr8_2:36150790-36150809 Msa1245890:CDS 20.0%
!! TGTTCTTCTATATTGAAAAA+AGG - chr8_2:36151530-36151549 Msa1245890:intron 20.0%
!! TTCTATATTGAAAAAAGGAA+GGG - chr8_2:36151535-36151554 Msa1245890:intron 20.0%
!! ACTGATAATATTATTTAACC+AGG + chr8_2:36151654-36151673 None:intergenic 20.0%
!! CATGAAATATGAAAAACTTA+GGG + chr8_2:36151688-36151707 None:intergenic 20.0%
! AATATCATTCCAATTCCAAT+TGG - chr8_2:36150332-36150351 Msa1245890:three_prime_UTR 25.0%
!!! TTGACTTTTCTTTAGAACTA+TGG - chr8_2:36150385-36150404 Msa1245890:three_prime_UTR 25.0%
! ATAATCACATAAATCAAGGT+TGG + chr8_2:36150724-36150743 None:intergenic 25.0%
! GAACATAATCACATAAATCA+AGG + chr8_2:36150728-36150747 None:intergenic 25.0%
! TTCTTGAAAAATGTTCATAC+TGG + chr8_2:36150786-36150805 None:intergenic 25.0%
! CTTAATAAATAGTAACACAC+CGG + chr8_2:36150832-36150851 None:intergenic 25.0%
! TACATTACAAATGATCACAA+AGG - chr8_2:36150884-36150903 Msa1245890:CDS 25.0%
! CAAGTATGCAATCATAATAT+AGG + chr8_2:36150982-36151001 None:intergenic 25.0%
!! AAGCTGATTAAACTCAATTT+TGG - chr8_2:36151039-36151058 Msa1245890:CDS 25.0%
! CTTCTATATTGAAAAAAGGA+AGG - chr8_2:36151534-36151553 Msa1245890:intron 25.0%
! TTATGCCTTATATATGTTGT+AGG - chr8_2:36151628-36151647 Msa1245890:intron 25.0%
! CCATGAAATATGAAAAACTT+AGG + chr8_2:36151689-36151708 None:intergenic 25.0%
!! CCTAAGTTTTTCATATTTCA+TGG - chr8_2:36151686-36151705 Msa1245890:CDS 25.0%
!! AGTTTTTCATATTTCATGGA+TGG - chr8_2:36151690-36151709 Msa1245890:CDS 25.0%
! AATATCATTCCAATTCCAAT+TGG - chr8_2:36150332-36150351 Msa1245890:three_prime_UTR 25.0%
!!! TTGACTTTTCTTTAGAACTA+TGG - chr8_2:36150385-36150404 Msa1245890:three_prime_UTR 25.0%
! ATAATCACATAAATCAAGGT+TGG + chr8_2:36150724-36150743 None:intergenic 25.0%
! GAACATAATCACATAAATCA+AGG + chr8_2:36150728-36150747 None:intergenic 25.0%
! TTCTTGAAAAATGTTCATAC+TGG + chr8_2:36150786-36150805 None:intergenic 25.0%
! CTTAATAAATAGTAACACAC+CGG + chr8_2:36150832-36150851 None:intergenic 25.0%
! TACATTACAAATGATCACAA+AGG - chr8_2:36150884-36150903 Msa1245890:CDS 25.0%
! CAAGTATGCAATCATAATAT+AGG + chr8_2:36150982-36151001 None:intergenic 25.0%
!! AAGCTGATTAAACTCAATTT+TGG - chr8_2:36151039-36151058 Msa1245890:CDS 25.0%
! CTTCTATATTGAAAAAAGGA+AGG - chr8_2:36151534-36151553 Msa1245890:intron 25.0%
! TTATGCCTTATATATGTTGT+AGG - chr8_2:36151628-36151647 Msa1245890:intron 25.0%
! CCATGAAATATGAAAAACTT+AGG + chr8_2:36151689-36151708 None:intergenic 25.0%
!! CCTAAGTTTTTCATATTTCA+TGG - chr8_2:36151686-36151705 Msa1245890:CDS 25.0%
!! AGTTTTTCATATTTCATGGA+TGG - chr8_2:36151690-36151709 Msa1245890:CDS 25.0%
AAGAAAAGTCAACTGTGAAA+GGG + chr8_2:36150377-36150396 None:intergenic 30.0%
AAAGAAAAGTCAACTGTGAA+AGG + chr8_2:36150378-36150397 None:intergenic 30.0%
TGTTTAGCTGAACTTTGTTA+TGG - chr8_2:36150446-36150465 Msa1245890:three_prime_UTR 30.0%
TCAAATTCAAGAAAAGAGGA+AGG + chr8_2:36150750-36150769 None:intergenic 30.0%
!!! TTTTTCAAGAAAATTTGGCC+AGG - chr8_2:36150795-36150814 Msa1245890:CDS 30.0%
! CGGTGTGTTACTATTTATTA+AGG - chr8_2:36150830-36150849 Msa1245890:CDS 30.0%
ATTGAGTTTAATCAGCTTGA+AGG + chr8_2:36151037-36151056 None:intergenic 30.0%
AATATAGAAGAACACACCTA+GGG + chr8_2:36151524-36151543 None:intergenic 30.0%
ACTGAATTCAATTACTGCTT+TGG + chr8_2:36151568-36151587 None:intergenic 30.0%
GTAATTGAATTCAGTGACAT+AGG - chr8_2:36151573-36151592 Msa1245890:intron 30.0%
AGTGAAAACCATATAGTCAT+AGG + chr8_2:36151725-36151744 None:intergenic 30.0%
AAGAAAAGTCAACTGTGAAA+GGG + chr8_2:36150377-36150396 None:intergenic 30.0%
AAAGAAAAGTCAACTGTGAA+AGG + chr8_2:36150378-36150397 None:intergenic 30.0%
TGTTTAGCTGAACTTTGTTA+TGG - chr8_2:36150446-36150465 Msa1245890:three_prime_UTR 30.0%
TCAAATTCAAGAAAAGAGGA+AGG + chr8_2:36150750-36150769 None:intergenic 30.0%
!!! TTTTTCAAGAAAATTTGGCC+AGG - chr8_2:36150795-36150814 Msa1245890:CDS 30.0%
! CGGTGTGTTACTATTTATTA+AGG - chr8_2:36150830-36150849 Msa1245890:CDS 30.0%
ATTGAGTTTAATCAGCTTGA+AGG + chr8_2:36151037-36151056 None:intergenic 30.0%
AATATAGAAGAACACACCTA+GGG + chr8_2:36151524-36151543 None:intergenic 30.0%
ACTGAATTCAATTACTGCTT+TGG + chr8_2:36151568-36151587 None:intergenic 30.0%
GTAATTGAATTCAGTGACAT+AGG - chr8_2:36151573-36151592 Msa1245890:intron 30.0%
AGTGAAAACCATATAGTCAT+AGG + chr8_2:36151725-36151744 None:intergenic 30.0%
AGAGAAAAGCCAATTGGAAT+TGG + chr8_2:36150344-36150363 None:intergenic 35.0%
! AGCTGAACTTTGTTATGGAA+AGG - chr8_2:36150451-36150470 Msa1245890:three_prime_UTR 35.0%
GAAAATTTGGCCAGGTTTAA+TGG - chr8_2:36150803-36150822 Msa1245890:CDS 35.0%
AAAAATTGCAACGCAACTTG+CGG + chr8_2:36150864-36150883 None:intergenic 35.0%
TAGACAAAATCAGTGGAACA+TGG - chr8_2:36151095-36151114 Msa1245890:CDS 35.0%
AGACAAAATCAGTGGAACAT+GGG - chr8_2:36151096-36151115 Msa1245890:CDS 35.0%
!!! GTTTTGTTGGAAGCATTGTA+GGG + chr8_2:36151280-36151299 None:intergenic 35.0%
CTACAATGCTTCCAACAAAA+CGG - chr8_2:36151279-36151298 Msa1245890:intron 35.0%
ATCGTTGGAATCAAATGCAT+AGG + chr8_2:36151365-36151384 None:intergenic 35.0%
TGCATTTGATTCCAACGATA+AGG - chr8_2:36151366-36151385 Msa1245890:intron 35.0%
CAATATAGAAGAACACACCT+AGG + chr8_2:36151525-36151544 None:intergenic 35.0%
CTATAGCTCCTATGACTATA+TGG - chr8_2:36151714-36151733 Msa1245890:CDS 35.0%
! ACTATATGGTTTTCACTCAC+TGG - chr8_2:36151728-36151747 Msa1245890:CDS 35.0%
ATGTCATAGAAATAGGAGTC+AGG - chr8_2:36151791-36151810 Msa1245890:exon 35.0%
AGAGAAAAGCCAATTGGAAT+TGG + chr8_2:36150344-36150363 None:intergenic 35.0%
! AGCTGAACTTTGTTATGGAA+AGG - chr8_2:36150451-36150470 Msa1245890:three_prime_UTR 35.0%
GAAAATTTGGCCAGGTTTAA+TGG - chr8_2:36150803-36150822 Msa1245890:CDS 35.0%
AAAAATTGCAACGCAACTTG+CGG + chr8_2:36150864-36150883 None:intergenic 35.0%
TAGACAAAATCAGTGGAACA+TGG - chr8_2:36151095-36151114 Msa1245890:CDS 35.0%
AGACAAAATCAGTGGAACAT+GGG - chr8_2:36151096-36151115 Msa1245890:CDS 35.0%
!!! GTTTTGTTGGAAGCATTGTA+GGG + chr8_2:36151280-36151299 None:intergenic 35.0%
CTACAATGCTTCCAACAAAA+CGG - chr8_2:36151279-36151298 Msa1245890:intron 35.0%
ATCGTTGGAATCAAATGCAT+AGG + chr8_2:36151365-36151384 None:intergenic 35.0%
TGCATTTGATTCCAACGATA+AGG - chr8_2:36151366-36151385 Msa1245890:intron 35.0%
CAATATAGAAGAACACACCT+AGG + chr8_2:36151525-36151544 None:intergenic 35.0%
CTATAGCTCCTATGACTATA+TGG - chr8_2:36151714-36151733 Msa1245890:CDS 35.0%
! ACTATATGGTTTTCACTCAC+TGG - chr8_2:36151728-36151747 Msa1245890:CDS 35.0%
ATGTCATAGAAATAGGAGTC+AGG - chr8_2:36151791-36151810 Msa1245890:exon 35.0%
GACTTCAGAGAAAAGCCAAT+TGG + chr8_2:36150350-36150369 None:intergenic 40.0%
ATCTACGCAGTTCTGTTATC+TGG - chr8_2:36151070-36151089 Msa1245890:CDS 40.0%
! TCTGGAGTAGACAAAATCAG+TGG - chr8_2:36151088-36151107 Msa1245890:CDS 40.0%
GTAGCACAACTTCAGCTTTA+TGG + chr8_2:36151167-36151186 None:intergenic 40.0%
! GCATGGCTAACATTTTGTGT+TGG + chr8_2:36151258-36151277 None:intergenic 40.0%
!!! CGTTTTGTTGGAAGCATTGT+AGG + chr8_2:36151281-36151300 None:intergenic 40.0%
! GAAGGTTTGAACCGTTTTGT+TGG + chr8_2:36151293-36151312 None:intergenic 40.0%
TGATTCCAACGATAAGGAAG+TGG - chr8_2:36151372-36151391 Msa1245890:intron 40.0%
ATAAGCCACTTCCTTATCGT+TGG + chr8_2:36151380-36151399 None:intergenic 40.0%
AACGATAAGGAAGTGGCTTA+TGG - chr8_2:36151379-36151398 Msa1245890:intron 40.0%
!! GATCTCAAACAAGTTGGTAG+TGG + chr8_2:36151431-36151450 None:intergenic 40.0%
! TGCGTTGATCTCAAACAAGT+TGG + chr8_2:36151437-36151456 None:intergenic 40.0%
! TTTGAGATCAACGCAATCAG+TGG - chr8_2:36151442-36151461 Msa1245890:intron 40.0%
!! TGAGAAAGCACTGAAGACAA+CGG + chr8_2:36151494-36151513 None:intergenic 40.0%
CAGTGACATAGGAAACTTCA+TGG - chr8_2:36151584-36151603 Msa1245890:intron 40.0%
CCAGGCCTACAACATATATA+AGG + chr8_2:36151636-36151655 None:intergenic 40.0%
CCTTATATATGTTGTAGGCC+TGG - chr8_2:36151633-36151652 Msa1245890:intron 40.0%
GACTTCAGAGAAAAGCCAAT+TGG + chr8_2:36150350-36150369 None:intergenic 40.0%
ATCTACGCAGTTCTGTTATC+TGG - chr8_2:36151070-36151089 Msa1245890:CDS 40.0%
! TCTGGAGTAGACAAAATCAG+TGG - chr8_2:36151088-36151107 Msa1245890:CDS 40.0%
GTAGCACAACTTCAGCTTTA+TGG + chr8_2:36151167-36151186 None:intergenic 40.0%
! GCATGGCTAACATTTTGTGT+TGG + chr8_2:36151258-36151277 None:intergenic 40.0%
!!! CGTTTTGTTGGAAGCATTGT+AGG + chr8_2:36151281-36151300 None:intergenic 40.0%
! GAAGGTTTGAACCGTTTTGT+TGG + chr8_2:36151293-36151312 None:intergenic 40.0%
TGATTCCAACGATAAGGAAG+TGG - chr8_2:36151372-36151391 Msa1245890:intron 40.0%
ATAAGCCACTTCCTTATCGT+TGG + chr8_2:36151380-36151399 None:intergenic 40.0%
AACGATAAGGAAGTGGCTTA+TGG - chr8_2:36151379-36151398 Msa1245890:intron 40.0%
!! GATCTCAAACAAGTTGGTAG+TGG + chr8_2:36151431-36151450 None:intergenic 40.0%
! TGCGTTGATCTCAAACAAGT+TGG + chr8_2:36151437-36151456 None:intergenic 40.0%
! TTTGAGATCAACGCAATCAG+TGG - chr8_2:36151442-36151461 Msa1245890:intron 40.0%
!! TGAGAAAGCACTGAAGACAA+CGG + chr8_2:36151494-36151513 None:intergenic 40.0%
CAGTGACATAGGAAACTTCA+TGG - chr8_2:36151584-36151603 Msa1245890:intron 40.0%
CCAGGCCTACAACATATATA+AGG + chr8_2:36151636-36151655 None:intergenic 40.0%
CCTTATATATGTTGTAGGCC+TGG - chr8_2:36151633-36151652 Msa1245890:intron 40.0%
ACTTACCTTGTCCCTGCTTA+GGG + chr8_2:36150520-36150539 None:intergenic 45.0%
TACTTACCTTGTCCCTGCTT+AGG + chr8_2:36150521-36150540 None:intergenic 45.0%
ATGATGAGTCTGTTCCAGCT+GGG + chr8_2:36151138-36151157 None:intergenic 45.0%
TATGATGAGTCTGTTCCAGC+TGG + chr8_2:36151139-36151158 None:intergenic 45.0%
AAAGCTGAAGTTGTGCTACG+CGG - chr8_2:36151168-36151187 Msa1245890:intron 45.0%
AAACGGTTCAAACCTTCGAG+TGG - chr8_2:36151296-36151315 Msa1245890:intron 45.0%
ACTTACCTTGTCCCTGCTTA+GGG + chr8_2:36150520-36150539 None:intergenic 45.0%
TACTTACCTTGTCCCTGCTT+AGG + chr8_2:36150521-36150540 None:intergenic 45.0%
ATGATGAGTCTGTTCCAGCT+GGG + chr8_2:36151138-36151157 None:intergenic 45.0%
TATGATGAGTCTGTTCCAGC+TGG + chr8_2:36151139-36151158 None:intergenic 45.0%
AAAGCTGAAGTTGTGCTACG+CGG - chr8_2:36151168-36151187 Msa1245890:intron 45.0%
AAACGGTTCAAACCTTCGAG+TGG - chr8_2:36151296-36151315 Msa1245890:intron 45.0%
TATGGCAGCACACAAGCTTG+TGG - chr8_2:36150403-36150422 Msa1245890:three_prime_UTR 50.0%
AGGGGAAGCTGTGACTTCAA+GGG + chr8_2:36150501-36150520 None:intergenic 50.0%
TAGGGGAAGCTGTGACTTCA+AGG + chr8_2:36150502-36150521 None:intergenic 50.0%
CTTACCTTGTCCCTGCTTAG+GGG + chr8_2:36150519-36150538 None:intergenic 50.0%
TGGCCAGGTTTAATGGAGTC+CGG - chr8_2:36150810-36150829 Msa1245890:CDS 50.0%
ACACCGGACTCCATTAAACC+TGG + chr8_2:36150816-36150835 None:intergenic 50.0%
CTAAACAAGACCTTCCCAGC+TGG - chr8_2:36151121-36151140 Msa1245890:intron 50.0%
!!! AGCGCGGTCTTTTTGGCTTA+TGG + chr8_2:36151194-36151213 None:intergenic 50.0%
TAAGCCAAAAAGACCGCGCT+TGG - chr8_2:36151194-36151213 Msa1245890:intron 50.0%
! TTCTCCAAGCGCGGTCTTTT+TGG + chr8_2:36151201-36151220 None:intergenic 50.0%
AGACCGAGGATGAACTCTCT+AGG - chr8_2:36151221-36151240 Msa1245890:intron 50.0%
GACCGAGGATGAACTCTCTA+GGG - chr8_2:36151222-36151241 Msa1245890:intron 50.0%
GTCCCTAGAGAGTTCATCCT+CGG + chr8_2:36151227-36151246 None:intergenic 50.0%
!! GTTGGAAGCATTGTAGGGCA+TGG + chr8_2:36151275-36151294 None:intergenic 50.0%
CGTACAAAGTACGTTGCCTG+AGG + chr8_2:36151340-36151359 None:intergenic 50.0%
TTATGGCCAAACCACGAACG+CGG - chr8_2:36151396-36151415 Msa1245890:intron 50.0%
AGATATCAAGAGTCGCGTGG+CGG + chr8_2:36151468-36151487 None:intergenic 50.0%
AGCAGATATCAAGAGTCGCG+TGG + chr8_2:36151471-36151490 None:intergenic 50.0%
GCTTTCTCAGTTGTGTCCCT+AGG - chr8_2:36151505-36151524 Msa1245890:intron 50.0%
TATGGCAGCACACAAGCTTG+TGG - chr8_2:36150403-36150422 Msa1245890:three_prime_UTR 50.0%
AGGGGAAGCTGTGACTTCAA+GGG + chr8_2:36150501-36150520 None:intergenic 50.0%
TAGGGGAAGCTGTGACTTCA+AGG + chr8_2:36150502-36150521 None:intergenic 50.0%
CTTACCTTGTCCCTGCTTAG+GGG + chr8_2:36150519-36150538 None:intergenic 50.0%
TGGCCAGGTTTAATGGAGTC+CGG - chr8_2:36150810-36150829 Msa1245890:CDS 50.0%
ACACCGGACTCCATTAAACC+TGG + chr8_2:36150816-36150835 None:intergenic 50.0%
CTAAACAAGACCTTCCCAGC+TGG - chr8_2:36151121-36151140 Msa1245890:intron 50.0%
!!! AGCGCGGTCTTTTTGGCTTA+TGG + chr8_2:36151194-36151213 None:intergenic 50.0%
TAAGCCAAAAAGACCGCGCT+TGG - chr8_2:36151194-36151213 Msa1245890:intron 50.0%
! TTCTCCAAGCGCGGTCTTTT+TGG + chr8_2:36151201-36151220 None:intergenic 50.0%
AGACCGAGGATGAACTCTCT+AGG - chr8_2:36151221-36151240 Msa1245890:intron 50.0%
GACCGAGGATGAACTCTCTA+GGG - chr8_2:36151222-36151241 Msa1245890:intron 50.0%
GTCCCTAGAGAGTTCATCCT+CGG + chr8_2:36151227-36151246 None:intergenic 50.0%
!! GTTGGAAGCATTGTAGGGCA+TGG + chr8_2:36151275-36151294 None:intergenic 50.0%
CGTACAAAGTACGTTGCCTG+AGG + chr8_2:36151340-36151359 None:intergenic 50.0%
TTATGGCCAAACCACGAACG+CGG - chr8_2:36151396-36151415 Msa1245890:intron 50.0%
AGATATCAAGAGTCGCGTGG+CGG + chr8_2:36151468-36151487 None:intergenic 50.0%
AGCAGATATCAAGAGTCGCG+TGG + chr8_2:36151471-36151490 None:intergenic 50.0%
GCTTTCTCAGTTGTGTCCCT+AGG - chr8_2:36151505-36151524 Msa1245890:intron 50.0%
AGTCACAGCTTCCCCTAAGC+AGG - chr8_2:36150505-36150524 Msa1245890:three_prime_UTR 55.0%
GTCACAGCTTCCCCTAAGCA+GGG - chr8_2:36150506-36150525 Msa1245890:three_prime_UTR 55.0%
TGAGTCTGTTCCAGCTGGGA+AGG + chr8_2:36151134-36151153 None:intergenic 55.0%
GCGCTGAATCAACCACTCGA+AGG + chr8_2:36151311-36151330 None:intergenic 55.0%
TATGGCCAAACCACGAACGC+GGG - chr8_2:36151397-36151416 Msa1245890:intron 55.0%
TCTTACCCGCGTTCGTGGTT+TGG + chr8_2:36151405-36151424 None:intergenic 55.0%
AGTCACAGCTTCCCCTAAGC+AGG - chr8_2:36150505-36150524 Msa1245890:three_prime_UTR 55.0%
GTCACAGCTTCCCCTAAGCA+GGG - chr8_2:36150506-36150525 Msa1245890:three_prime_UTR 55.0%
TGAGTCTGTTCCAGCTGGGA+AGG + chr8_2:36151134-36151153 None:intergenic 55.0%
GCGCTGAATCAACCACTCGA+AGG + chr8_2:36151311-36151330 None:intergenic 55.0%
TATGGCCAAACCACGAACGC+GGG - chr8_2:36151397-36151416 Msa1245890:intron 55.0%
TCTTACCCGCGTTCGTGGTT+TGG + chr8_2:36151405-36151424 None:intergenic 55.0%
GCTTCCCCTAAGCAGGGACA+AGG - chr8_2:36150512-36150531 Msa1245890:three_prime_UTR 60.0%
CCTCGGTCTTTCTCCAAGCG+CGG + chr8_2:36151210-36151229 None:intergenic 60.0%
GGTACTCTTACCCGCGTTCG+TGG + chr8_2:36151410-36151429 None:intergenic 60.0%
GCTTCCCCTAAGCAGGGACA+AGG - chr8_2:36150512-36150531 Msa1245890:three_prime_UTR 60.0%
CCTCGGTCTTTCTCCAAGCG+CGG + chr8_2:36151210-36151229 None:intergenic 60.0%
GGTACTCTTACCCGCGTTCG+TGG + chr8_2:36151410-36151429 None:intergenic 60.0%
CCGCGCTTGGAGAAAGACCG+AGG - chr8_2:36151207-36151226 Msa1245890:intron 65.0%
GATTCAGCGCGACGTGCCTC+AGG - chr8_2:36151321-36151340 Msa1245890:intron 65.0%
CCGCGCTTGGAGAAAGACCG+AGG - chr8_2:36151207-36151226 Msa1245890:intron 65.0%
GATTCAGCGCGACGTGCCTC+AGG - chr8_2:36151321-36151340 Msa1245890:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 36150316 36151888 36150316 ID=Msa1245890;Name=Msa1245890
chr8_2 mRNA 36150316 36151888 36150316 ID=Msa1245890-mRNA-1;Parent=Msa1245890;Name=Msa1245890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=88|1|1|1|1|1|2|312|208
chr8_2 exon 36150316 36151124 36150316 ID=Msa1245890-mRNA-1:exon:11528;Parent=Msa1245890-mRNA-1
chr8_2 exon 36151671 36151888 36151671 ID=Msa1245890-mRNA-1:exon:11527;Parent=Msa1245890-mRNA-1
chr8_2 five_prime_UTR 36151801 36151888 36151801 ID=Msa1245890-mRNA-1:five_prime_utr;Parent=Msa1245890-mRNA-1
chr8_2 CDS 36151671 36151800 36151671 ID=Msa1245890-mRNA-1:cds;Parent=Msa1245890-mRNA-1
chr8_2 CDS 36150628 36151124 36150628 ID=Msa1245890-mRNA-1:cds;Parent=Msa1245890-mRNA-1
chr8_2 three_prime_UTR 36150316 36150627 36150316 ID=Msa1245890-mRNA-1:three_prime_utr;Parent=Msa1245890-mRNA-1
Gene Sequence

>Msa1245890

ATGGCAGCACACAAGCTTGTGGTAGCATCACTTCTTCTATGCTGTTTAGCTGAACTTTGTTATGGAAAGGATCTCTTTTCTTCTTTGAAAAGAACCCTTGAAGTCACAGCTTCCCCTAAGCAGGGACAAGTTCTGTTATCTGGAGTAGACAAAATCAGTGGAACATGGGCTCTAAACAAGACCTTCCCAGCTGGAACAGACTCATCATACAAAACCATAAAGCTGAAGTTGTGCTACGCGGCCATAAGCCAAAAAGACCGCGCTTGGAGAAAGACCGAGGATGAACTCTCTAGGGACAAGACTTGCCAACACAAAATGTTAGCCATGCCCTACAATGCTTCCAACAAAACGGTTCAAACCTTCGAGTGGTTGATTCAGCGCGACGTGCCTCAGGCAACGTACTTTGTACGCGCCTATGCATTTGATTCCAACGATAAGGAAGTGGCTTATGGCCAAACCACGAACGCGGGTAAGAGTACCACTACCAACTTGTTTGAGATCAACGCAATCAGTGGCCGCCACGCGACTCTTGATATCTGCTCCGTTGTCTTCAGTGCTTTCTCAGTTGTGTCCCTAGGTGTGTTCTTCTATATTGAAAAAAGGAAGGGAAAGTCACCAAAGCAGTAA

Protein sequence

>Msa1245890

MAAHKLVVASLLLCCLAELCYGKDLFSSLKRTLEVTASPKQGQVLLSGVDKISGTWALNKTFPAGTDSSYKTIKLKLCYAAISQKDRAWRKTEDELSRDKTCQHKMLAMPYNASNKTVQTFEWLIQRDVPQATYFVRAYAFDSNDKEVAYGQTTNAGKSTTTNLFEINAISGRHATLDICSVVFSAFSVVSLGVFFYIEKRKGKSPKQ*