AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1015560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015560 MtrunA17_Chr7g0228891 95.200 250 12 0 1 250 1 250 2.00e-171 474
Msa1015560 MtrunA17_Chr3g0110351 58.571 210 66 4 1 194 1 205 9.59e-75 230
Msa1015560 MtrunA17_Chr5g0434571 72.973 148 37 1 1 145 37 184 2.00e-74 231
Msa1015560 MtrunA17_Chr4g0057031 75.969 129 31 0 1 129 1 129 9.99e-70 216
Msa1015560 MtrunA17_Chr8g0349261 70.455 132 37 2 1 130 1 132 2.49e-62 197
Msa1015560 MtrunA17_Chr4g0039971 58.857 175 61 3 1 168 2 172 3.06e-62 199
Msa1015560 MtrunA17_Chr6g0453471 67.969 128 41 0 1 128 1 128 3.76e-61 196
Msa1015560 MtrunA17_Chr7g0217741 61.806 144 55 0 1 144 1 144 5.29e-61 195
Msa1015560 MtrunA17_Chr3g0115821 66.406 128 43 0 1 128 1 128 5.88e-60 193
Msa1015560 MtrunA17_Chr1g0193371 55.357 168 72 2 1 168 1 165 1.14e-59 193
Msa1015560 MtrunA17_Chr4g0037141 53.714 175 70 2 1 173 1 166 1.16e-59 191
Msa1015560 MtrunA17_Chr4g0042671 66.406 128 43 0 1 128 1 128 5.59e-59 192
Msa1015560 MtrunA17_Chr4g0048511 66.667 129 42 1 1 128 1 129 8.42e-59 191
Msa1015560 MtrunA17_Chr5g0410961 55.556 162 67 1 1 157 1 162 2.04e-58 189
Msa1015560 MtrunA17_Chr2g0281071 65.891 129 43 1 1 128 1 129 3.41e-58 189
Msa1015560 MtrunA17_Chr3g0103281 63.566 129 47 0 1 129 1 129 5.32e-58 187
Msa1015560 MtrunA17_Chr7g0270891 44.495 218 118 2 1 218 1 215 7.91e-58 188
Msa1015560 MtrunA17_Chr3g0131121 65.116 129 45 0 1 129 1 129 8.47e-58 186
Msa1015560 MtrunA17_Chr2g0323411 66.406 128 43 0 1 128 1 128 1.14e-57 187
Msa1015560 MtrunA17_Chr3g0117091 61.765 136 52 0 1 136 1 136 3.66e-57 186
Msa1015560 MtrunA17_Chr4g0058631 50.820 183 81 3 1 183 1 174 8.17e-57 186
Msa1015560 MtrunA17_Chr1g0211161 61.940 134 51 0 3 136 4 137 1.01e-56 181
Msa1015560 MtrunA17_Chr8g0385321 62.791 129 48 0 1 129 1 129 1.74e-56 183
Msa1015560 MtrunA17_Chr6g0452271 57.639 144 61 0 1 144 1 144 5.56e-56 182
Msa1015560 MtrunA17_Chr1g0193801 43.830 235 113 5 1 216 1 235 7.55e-56 184
Msa1015560 MtrunA17_Chr1g0187761 68.966 116 36 0 1 116 1 116 1.52e-55 179
Msa1015560 MtrunA17_Chr5g0395281 57.718 149 63 0 1 149 1 149 4.89e-55 179
Msa1015560 MtrunA17_Chr1g0203411 56.081 148 56 1 1 148 1 139 8.38e-55 178
Msa1015560 MtrunA17_Chr7g0271241 57.764 161 55 2 1 148 1 161 1.02e-54 181
Msa1015560 MtrunA17_Chr7g0261281 68.103 116 37 0 1 116 1 116 4.00e-54 176
Msa1015560 MtrunA17_Chr3g0121241 64.800 125 44 0 5 129 35 159 7.77e-54 176
Msa1015560 MtrunA17_Chr5g0435101 60.800 125 49 0 3 127 2 126 1.45e-53 172
Msa1015560 MtrunA17_Chr1g0194951 68.103 116 37 0 1 116 1 116 9.16e-53 175
Msa1015560 MtrunA17_Chr1g0167691 65.517 116 40 0 1 116 1 116 2.37e-52 171
Msa1015560 MtrunA17_Chr2g0330041 67.241 116 38 0 1 116 1 116 3.54e-52 174
Msa1015560 MtrunA17_Chr7g0275911 65.812 117 40 0 1 117 1 117 4.32e-52 170
Msa1015560 MtrunA17_Chr8g0342521 54.140 157 64 1 1 157 1 149 7.88e-52 172
Msa1015560 MtrunA17_Chr7g0274581 59.829 117 47 0 1 117 1 117 3.47e-51 166
Msa1015560 MtrunA17_Chr2g0311221 70.642 109 32 0 2 110 4 112 4.25e-51 170
Msa1015560 MtrunA17_Chr4g0068061 64.655 116 41 0 1 116 1 116 4.41e-51 170
Msa1015560 MtrunA17_Chr1g0167661 60.938 128 46 1 1 128 1 124 1.54e-50 166
Msa1015560 MtrunA17_Chr8g0346561 63.248 117 43 0 1 117 1 117 1.88e-50 167
Msa1015560 MtrunA17_Chr2g0309911 62.698 126 46 1 1 126 1 125 6.44e-50 166
Msa1015560 MtrunA17_Chr2g0323351 62.069 116 44 0 1 116 1 116 1.12e-49 164
Msa1015560 MtrunA17_Chr8g0342541 63.793 116 42 0 1 116 1 116 1.20e-49 167
Msa1015560 MtrunA17_Chr7g0217221 64.957 117 41 0 1 117 1 117 1.69e-49 164
Msa1015560 MtrunA17_Chr1g0151941 51.592 157 66 4 1 150 1 154 2.18e-49 163
Msa1015560 MtrunA17_Chr4g0044421 61.600 125 47 1 3 126 2 126 2.51e-49 161
Msa1015560 MtrunA17_Chr4g0022901 60.345 116 45 1 1 115 1 116 3.20e-49 163
Msa1015560 MtrunA17_Chr4g0022911 58.621 116 47 1 1 115 1 116 4.65e-49 163
Msa1015560 MtrunA17_Chr7g0254411 62.992 127 45 2 1 125 1 127 4.91e-49 165
Msa1015560 MtrunA17_Chr4g0022931 49.324 148 74 1 1 147 1 148 5.36e-49 162
Msa1015560 MtrunA17_Chr8g0387421 62.393 117 44 0 1 117 1 117 5.52e-49 164
Msa1015560 MtrunA17_Chr7g0269831 55.556 153 65 2 1 152 1 151 1.01e-48 164
Msa1015560 MtrunA17_Chr4g0060721 61.207 116 45 0 1 116 2 117 1.37e-48 163
Msa1015560 MtrunA17_Chr4g0070641 63.866 119 43 0 1 119 1 119 1.60e-48 158
Msa1015560 MtrunA17_Chr4g0070611 63.866 119 43 0 1 119 1 119 1.65e-48 162
Msa1015560 MtrunA17_Chr4g0032401 58.462 130 51 1 12 141 17 143 1.81e-48 163
Msa1015560 MtrunA17_Chr3g0092401 61.538 117 45 0 1 117 2 118 3.18e-48 162
Msa1015560 MtrunA17_Chr8g0342481 62.393 117 43 1 1 116 1 117 6.07e-47 161
Msa1015560 MtrunA17_Chr5g0400821 59.829 117 46 1 1 116 1 117 7.50e-47 158
Msa1015560 MtrunA17_Chr5g0417821 59.664 119 48 0 10 128 5 123 1.02e-46 157
Msa1015560 MtrunA17_Chr5g0397231 62.727 110 41 0 1 110 1 110 1.50e-46 158
Msa1015560 MtrunA17_Chr3g0135311 59.829 117 46 1 1 116 1 117 9.62e-46 156
Msa1015560 MtrunA17_Chr6g0453211 62.727 110 41 0 1 110 1 110 9.84e-46 155
Msa1015560 MtrunA17_Chr2g0328771 64.815 108 38 0 12 119 20 127 1.02e-45 155
Msa1015560 MtrunA17_Chr1g0152011 50.318 157 72 3 1 156 1 152 1.34e-45 156
Msa1015560 MtrunA17_Chr4g0028311 54.688 128 57 1 1 127 1 128 6.47e-45 154
Msa1015560 MtrunA17_Chr7g0264641 52.206 136 59 2 1 135 1 131 4.98e-44 150
Msa1015560 MtrunA17_Chr1g0203441 59.829 117 46 1 1 116 1 117 5.08e-43 147
Msa1015560 MtrunA17_Chr7g0228231 61.321 106 41 0 12 117 14 119 5.44e-43 145
Msa1015560 MtrunA17_Chr4g0022891 57.522 113 48 0 1 113 1 113 6.14e-43 146
Msa1015560 MtrunA17_Chr3g0088461 60.909 110 43 0 8 117 18 127 1.05e-42 148
Msa1015560 MtrunA17_Chr6g0450101 56.303 119 50 1 1 117 1 119 2.15e-42 144
Msa1015560 MtrunA17_Chr6g0487491 56.452 124 45 2 1 115 1 124 2.82e-42 145
Msa1015560 MtrunA17_Chr4g0072751 58.559 111 45 1 1 110 1 111 3.01e-42 147
Msa1015560 MtrunA17_Chr4g0022881 55.263 114 51 0 1 114 1 114 4.47e-42 144
Msa1015560 MtrunA17_Chr1g0209661 54.237 118 54 0 12 129 27 144 4.67e-42 146
Msa1015560 MtrunA17_Chr8g0354661 62.264 106 40 0 10 115 35 140 8.70e-42 150
Msa1015560 MtrunA17_Chr4g0054391 59.091 110 44 1 1 109 1 110 1.13e-41 144
Msa1015560 MtrunA17_Chr7g0247131 71.591 88 25 0 43 130 9 96 1.20e-41 144
Msa1015560 MtrunA17_Chr2g0327351 57.658 111 46 1 1 110 1 111 3.32e-41 144
Msa1015560 MtrunA17_Chr6g0470971 57.265 117 48 1 1 115 1 117 4.81e-41 142
Msa1015560 MtrunA17_Chr1g0194291 56.667 120 51 1 8 127 17 135 1.17e-40 141
Msa1015560 MtrunA17_Chr2g0293911 56.667 120 51 1 8 127 20 138 1.54e-39 140
Msa1015560 MtrunA17_Chr3g0080861 57.407 108 46 0 10 117 35 142 2.87e-39 143
Msa1015560 MtrunA17_Chr1g0186061 60.952 105 41 0 13 117 21 125 4.37e-39 137
Msa1015560 MtrunA17_Chr1g0168661 60.952 105 41 0 13 117 22 126 4.48e-39 137
Msa1015560 MtrunA17_Chr4g0068921 54.918 122 54 1 8 129 20 140 2.04e-38 133
Msa1015560 MtrunA17_Chr1g0194301 53.043 115 54 0 8 122 29 143 2.84e-38 135
Msa1015560 MtrunA17_Chr4g0055981 55.652 115 51 0 9 123 52 166 6.96e-38 133
Msa1015560 MtrunA17_Chr3g0099131 54.717 106 48 0 10 115 39 144 1.89e-37 138
Msa1015560 MtrunA17_Chr2g0322521 51.515 132 61 3 9 140 26 154 5.00e-37 135
Msa1015560 MtrunA17_Chr2g0294811 65.909 88 30 0 1 88 1 88 3.04e-36 125
Msa1015560 MtrunA17_Chr1g0154031 56.731 104 45 0 12 115 76 179 4.02e-36 132
Msa1015560 MtrunA17_Chr2g0327821 53.774 106 49 0 12 117 6 111 4.18e-36 128
Msa1015560 MtrunA17_Chr4g0042611 64.773 88 31 0 1 88 1 88 1.25e-35 122
Msa1015560 MtrunA17_Chr7g0240821 57.009 107 46 0 16 122 5 111 2.30e-35 126
Msa1015560 MtrunA17_Chr1g0180391 50.877 114 56 0 4 117 11 124 4.00e-35 125
Msa1015560 MtrunA17_Chr4g0030881 52.727 110 45 1 13 115 8 117 4.29e-35 126
Msa1015560 MtrunA17_Chr8g0343831 55.660 106 47 0 12 117 8 113 4.94e-35 126
Msa1015560 MtrunA17_Chr5g0434831 53.774 106 49 0 11 116 6 111 6.33e-34 121
Msa1015560 MtrunA17_Chr8g0342511 62.069 87 33 0 1 87 1 87 8.20e-34 118
Msa1015560 MtrunA17_Chr5g0434931 52.830 106 50 0 11 116 34 139 1.34e-33 123
Msa1015560 MtrunA17_Chr5g0434911 50.909 110 54 0 7 116 16 125 1.46e-33 123
Msa1015560 MtrunA17_Chr8g0342531 58.333 96 40 0 1 96 1 96 1.77e-33 119
Msa1015560 MtrunA17_Chr7g0220341 53.211 109 49 1 10 116 23 131 1.86e-33 122
Msa1015560 MtrunA17_Chr5g0440781 48.673 113 56 2 13 124 13 124 2.40e-33 120
Msa1015560 MtrunA17_Chr1g0192411 44.928 138 68 2 8 138 8 144 8.80e-33 124
Msa1015560 MtrunA17_Chr5g0440761 48.673 113 56 2 13 124 13 124 1.93e-32 119
Msa1015560 MtrunA17_Chr5g0441141 48.673 113 56 2 13 124 13 124 2.49e-32 119
Msa1015560 MtrunA17_Chr5g0434841 52.830 106 50 0 11 116 19 124 3.18e-32 120
Msa1015560 MtrunA17_Chr2g0323321 57.609 92 38 1 1 92 1 91 4.36e-32 114
Msa1015560 MtrunA17_Chr8g0360111 52.941 102 48 0 11 112 24 125 1.55e-31 117
Msa1015560 MtrunA17_Chr8g0342461 57.000 100 40 2 1 97 1 100 1.75e-31 113
Msa1015560 MtrunA17_Chr8g0342471 57.000 100 40 2 1 97 1 100 2.08e-31 113
Msa1015560 MtrunA17_Chr7g0228991 52.830 106 50 0 11 116 28 133 2.09e-31 117
Msa1015560 MtrunA17_Chr5g0441131 46.552 116 60 2 10 124 7 121 3.66e-29 108
Msa1015560 MtrunA17_Chr3g0093811 57.471 87 37 0 43 129 13 99 5.42e-29 110
Msa1015560 MtrunA17_Chr5g0395221 59.524 84 34 0 5 88 5 88 7.94e-29 105
Msa1015560 MtrunA17_Chr5g0401731 44.444 117 62 2 14 129 15 129 5.74e-28 109
Msa1015560 MtrunA17_Chr6g0454921 45.536 112 58 2 14 124 15 124 1.25e-27 105
Msa1015560 MtrunA17_Chr8g0334881 45.133 113 61 1 8 119 6 118 3.55e-27 107
Msa1015560 MtrunA17_Chr3g0099141 50.575 87 43 0 8 94 36 122 4.85e-27 102
Msa1015560 MtrunA17_Chr6g0480581 44.262 122 61 3 14 130 4 123 1.14e-26 103
Msa1015560 MtrunA17_Chr7g0238631 44.275 131 65 4 12 136 111 239 1.59e-26 108
Msa1015560 MtrunA17_Chr4g0013361 45.192 104 56 1 12 114 10 113 6.03e-26 103
Msa1015560 MtrunA17_Chr4g0053431 43.103 116 64 2 14 128 5 119 8.89e-26 102
Msa1015560 MtrunA17_Chr3g0133601 44.660 103 54 2 14 115 37 137 1.54e-25 100
Msa1015560 MtrunA17_Chr4g0008551 44.737 114 56 3 14 126 38 145 2.12e-25 102
Msa1015560 MtrunA17_Chr5g0429661 46.667 105 53 2 12 115 120 222 2.31e-25 102
Msa1015560 MtrunA17_Chr5g0417621 46.667 105 53 2 14 117 134 236 4.96e-24 100
Msa1015560 MtrunA17_Chr4g0058991 44.037 109 58 2 9 116 204 310 5.22e-24 100
Msa1015560 MtrunA17_Chr3g0117511 41.284 109 61 2 9 116 178 284 1.64e-23 99.0
Msa1015560 MtrunA17_Chr4g0042501 44.762 105 55 2 14 117 105 207 1.78e-23 98.6
Msa1015560 MtrunA17_Chr5g0425591 48.235 85 43 1 10 93 7 91 2.20e-23 91.3
Msa1015560 MtrunA17_Chr3g0139671 44.340 106 56 2 12 116 83 186 2.91e-23 99.0
Msa1015560 MtrunA17_Chr6g0453751 47.826 92 39 2 11 93 19 110 4.90e-23 91.3
Msa1015560 MtrunA17_Chr7g0229101 57.746 71 30 0 43 113 3 73 5.97e-23 93.2
Msa1015560 MtrunA17_Chr5g0434901 59.091 66 27 0 48 113 9 74 1.03e-22 90.1
Msa1015560 MtrunA17_Chr7g0229131 52.703 74 35 0 43 116 3 76 3.52e-22 90.5
Msa1015560 MtrunA17_Chr5g0437321 45.283 106 52 3 8 112 16 116 4.57e-22 92.8
Msa1015560 MtrunA17_Chr6g0460661 44.211 95 50 2 17 110 19 111 8.73e-22 89.0
Msa1015560 MtrunA17_Chr1g0157731 42.453 106 58 2 12 116 89 192 8.95e-22 94.7
Msa1015560 MtrunA17_Chr6g0460671 42.991 107 58 2 14 119 99 203 7.14e-21 90.5
Msa1015560 MtrunA17_Chr3g0125801 44.954 109 57 2 8 115 10 116 3.63e-20 87.8
Msa1015560 MtrunA17_Chr7g0228531 41.176 102 58 2 14 115 220 319 2.46e-19 86.7
Msa1015560 MtrunA17_Chr7g0254261 42.718 103 56 2 14 115 89 189 5.83e-19 85.1
Msa1015560 MtrunA17_Chr5g0397841 43.434 99 53 2 12 109 108 204 7.74e-19 85.5
Msa1015560 MtrunA17_Chr1g0177901 43.023 86 48 1 25 110 5 89 2.82e-17 78.2
Msa1015560 MtrunA17_Chr7g0228401 43.678 87 46 2 25 110 290 374 3.34e-17 80.9
Msa1015560 MtrunA17_Chr7g0247141 60.417 48 18 1 1 47 1 48 1.04e-15 69.7
Msa1015560 MtrunA17_Chr7g0233061 38.318 107 56 4 14 117 180 279 1.26e-15 75.5
Msa1015560 MtrunA17_Chr7g0238651 37.500 120 67 3 14 125 7 126 1.34e-15 75.5
Msa1015560 MtrunA17_Chr7g0228481 36.937 111 63 3 10 115 216 324 1.55e-15 75.9
Msa1015560 MtrunA17_Chr5g0395231 60.784 51 20 0 78 128 5 55 7.73e-15 72.0
Msa1015560 MtrunA17_Chr5g0416341 36.364 110 67 2 17 125 29 136 2.89e-14 72.0
Msa1015560 MtrunA17_Chr8g0362231 38.235 102 60 2 17 117 25 124 7.79e-13 67.8
Msa1015560 MtrunA17_Chr1g0193901 44.048 84 45 2 12 93 11 94 4.61e-12 61.6
Msa1015560 MtrunA17_Chr1g0193891 44.048 84 45 2 12 93 11 94 4.61e-12 61.6
Msa1015560 MtrunA17_Chr1g0193871 44.048 84 45 2 12 93 11 94 4.61e-12 61.6
Msa1015560 MtrunA17_Chr1g0193881 44.048 84 45 2 12 93 11 94 4.61e-12 61.6
Msa1015560 MtrunA17_Chr5g0434871 56.818 44 19 0 73 116 1 44 1.04e-11 59.3
Msa1015560 MtrunA17_Chr4g0042621 62.500 40 15 0 89 128 15 54 7.91e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015560 AT5G14340.1 56.818 264 93 8 1 258 13 261 2.12e-88 264
Msa1015560 AT5G16600.1 75.556 135 33 0 1 135 1 135 1.20e-74 231
Msa1015560 AT1G66230.1 75.556 135 31 1 1 133 1 135 8.69e-73 224
Msa1015560 AT4G22680.1 69.014 142 44 0 1 142 1 142 7.84e-70 216
Msa1015560 AT4G12350.1 44.828 261 124 6 1 248 1 254 9.32e-66 206
Msa1015560 AT3G61250.1 68.992 129 40 0 1 129 1 129 4.78e-62 197
Msa1015560 AT3G02940.2 67.969 128 41 0 1 128 1 128 2.27e-61 196
Msa1015560 AT3G02940.1 67.969 128 41 0 1 128 1 128 6.23e-61 195
Msa1015560 AT3G02940.3 67.969 128 41 0 1 128 1 128 6.23e-61 195
Msa1015560 AT5G62320.1 60.784 153 51 2 2 147 3 153 9.31e-61 192
Msa1015560 AT5G15310.1 67.969 128 41 0 1 128 1 128 9.89e-61 195
Msa1015560 AT5G15310.4 67.969 128 41 0 1 128 1 128 1.06e-60 192
Msa1015560 AT5G15310.2 67.969 128 41 0 1 128 1 128 1.35e-60 194
Msa1015560 AT3G01140.2 68.504 127 40 0 1 127 1 127 3.60e-60 194
Msa1015560 AT4G28110.1 65.625 128 44 0 1 128 1 128 4.91e-60 192
Msa1015560 AT5G16770.4 66.406 128 43 0 1 128 1 128 1.32e-59 192
Msa1015560 AT5G16770.3 66.406 128 43 0 1 128 1 128 1.32e-59 192
Msa1015560 AT1G09540.1 65.000 140 49 0 1 140 1 140 1.52e-59 193
Msa1015560 AT5G16770.1 66.406 128 43 0 1 128 1 128 2.99e-59 191
Msa1015560 AT5G16770.2 66.406 128 43 0 1 128 1 128 2.99e-59 191
Msa1015560 AT5G26660.1 61.224 147 52 2 1 146 1 143 3.54e-59 192
Msa1015560 AT4G21440.1 66.406 128 43 0 1 128 1 128 3.78e-59 191
Msa1015560 AT4G38620.1 62.044 137 52 0 1 137 1 137 5.47e-59 189
Msa1015560 AT4G17785.2 65.116 129 44 1 1 128 1 129 3.33e-58 189
Msa1015560 AT4G17785.1 65.116 129 44 1 1 128 1 129 3.78e-58 189
Msa1015560 AT1G57560.2 62.222 135 51 0 1 135 1 135 4.05e-58 186
Msa1015560 AT4G09460.1 65.116 129 45 0 1 129 1 129 5.56e-58 185
Msa1015560 AT3G23250.1 70.940 117 34 0 1 117 1 117 1.14e-57 186
Msa1015560 AT1G34670.1 64.844 128 45 0 1 128 1 128 1.39e-57 188
Msa1015560 AT1G57560.1 60.839 143 54 1 1 141 1 143 1.82e-57 186
Msa1015560 AT5G65230.1 64.844 128 45 0 1 128 1 128 2.06e-57 186
Msa1015560 AT4G01680.3 61.594 138 53 0 1 138 1 138 2.39e-57 183
Msa1015560 AT2G16720.1 56.410 156 67 1 1 155 1 156 2.71e-57 184
Msa1015560 AT3G01140.1 65.909 132 42 1 5 136 48 176 5.75e-57 187
Msa1015560 AT5G56110.1 63.566 129 47 0 1 129 1 129 6.55e-57 185
Msa1015560 AT4G34990.1 57.143 147 63 0 1 147 1 147 7.93e-57 183
Msa1015560 AT4G05100.1 64.341 129 45 1 1 128 1 129 8.68e-57 185
Msa1015560 AT3G13540.1 57.317 164 61 2 5 167 16 171 1.10e-56 182
Msa1015560 AT4G01680.1 61.594 138 53 0 1 138 1 138 1.16e-56 185
Msa1015560 AT1G35515.1 60.000 135 54 0 1 135 1 135 1.49e-56 181
Msa1015560 AT5G10280.1 63.281 128 47 0 1 128 1 128 3.11e-56 184
Msa1015560 AT1G06180.1 69.828 116 35 0 1 116 1 116 7.96e-56 180
Msa1015560 AT1G22640.1 62.791 129 48 0 1 129 1 129 1.06e-55 180
Msa1015560 AT1G16490.1 56.129 155 59 2 2 153 4 152 1.24e-54 177
Msa1015560 AT5G61420.2 56.552 145 62 1 1 144 1 145 3.11e-54 179
Msa1015560 AT2G31180.1 68.966 116 36 0 1 116 1 116 4.17e-54 176
Msa1015560 AT3G12820.1 71.053 114 33 0 3 116 5 118 7.87e-54 174
Msa1015560 AT5G60890.1 57.778 135 57 0 1 135 1 135 3.02e-53 175
Msa1015560 AT4G01680.2 56.667 150 53 1 1 138 1 150 3.98e-53 176
Msa1015560 AT5G07690.1 60.769 130 51 0 1 130 1 130 4.22e-53 176
Msa1015560 AT1G56160.1 68.696 115 36 0 2 116 4 118 4.48e-53 174
Msa1015560 AT1G79180.1 68.696 115 36 0 2 116 4 118 4.82e-53 174
Msa1015560 AT5G49330.1 61.069 131 50 1 1 130 1 131 1.60e-52 174
Msa1015560 AT5G54230.1 61.194 134 52 0 1 134 1 134 3.07e-52 173
Msa1015560 AT1G18570.1 58.219 146 57 2 1 142 1 146 2.79e-51 171
Msa1015560 AT5G07700.1 58.462 130 54 0 1 130 1 130 3.33e-51 171
Msa1015560 AT5G07700.2 58.462 130 54 0 1 130 1 130 3.33e-51 171
Msa1015560 AT3G28470.1 59.542 131 53 0 1 131 1 131 4.26e-51 170
Msa1015560 AT1G74080.1 60.769 130 51 0 1 130 1 130 5.07e-51 170
Msa1015560 AT2G47460.1 66.379 116 39 0 1 116 1 116 5.71e-51 171
Msa1015560 AT3G13890.2 65.517 116 40 0 1 116 1 116 2.28e-50 169
Msa1015560 AT3G47600.1 64.957 117 41 0 1 117 1 117 3.41e-50 168
Msa1015560 AT1G74430.1 56.204 137 60 0 1 137 1 137 4.44e-50 166
Msa1015560 AT3G62610.1 64.655 116 41 0 1 116 1 116 5.83e-50 167
Msa1015560 AT3G12720.1 62.698 126 46 1 1 126 12 136 8.29e-50 166
Msa1015560 AT1G08810.1 64.655 116 41 0 1 116 1 116 8.38e-50 165
Msa1015560 AT5G62470.2 64.103 117 42 0 1 117 1 117 9.59e-50 167
Msa1015560 AT1G18710.1 56.489 131 57 0 1 131 1 131 2.30e-49 164
Msa1015560 AT1G74650.1 62.185 119 45 0 1 119 1 119 1.16e-48 164
Msa1015560 AT1G63910.1 57.692 130 55 0 1 130 1 130 2.29e-48 164
Msa1015560 AT3G28910.1 62.295 122 46 0 1 122 1 122 2.67e-48 163
Msa1015560 AT5G62470.1 64.103 117 41 1 1 117 1 116 2.78e-48 163
Msa1015560 AT3G01530.1 61.207 116 45 0 12 127 25 140 1.93e-47 157
Msa1015560 AT3G13890.1 60.800 125 40 1 1 116 1 125 3.02e-47 161
Msa1015560 AT3G49690.1 59.829 117 46 1 1 116 1 117 2.61e-46 157
Msa1015560 AT1G79180.2 53.378 148 36 1 2 116 4 151 3.72e-46 157
Msa1015560 AT5G65790.1 58.974 117 47 1 1 116 1 117 3.89e-46 158
Msa1015560 AT5G12870.1 66.981 106 35 0 12 117 18 123 5.88e-46 155
Msa1015560 AT2G36890.2 57.480 127 53 1 1 126 42 168 9.39e-46 157
Msa1015560 AT2G36890.1 57.480 127 53 1 1 126 1 127 1.02e-45 155
Msa1015560 AT5G23000.1 61.017 118 43 2 1 116 1 117 4.20e-45 154
Msa1015560 AT5G57620.1 58.974 117 47 1 1 116 1 117 7.38e-45 154
Msa1015560 AT4G37780.1 58.120 117 48 1 1 116 1 117 1.20e-44 153
Msa1015560 AT3G08500.1 62.727 110 41 0 8 117 26 135 2.03e-44 153
Msa1015560 AT3G27810.1 60.377 106 42 0 12 117 20 125 1.72e-42 145
Msa1015560 AT5G40350.1 60.952 105 41 0 12 116 17 121 2.08e-42 144
Msa1015560 AT1G68320.1 57.658 111 47 0 12 122 19 129 6.35e-42 145
Msa1015560 AT1G25340.1 52.991 117 55 0 13 129 19 135 6.03e-41 142
Msa1015560 AT1G48000.1 55.833 120 52 1 10 129 30 148 9.02e-41 141
Msa1015560 AT3G06490.1 59.130 115 47 0 8 122 15 129 1.07e-40 143
Msa1015560 AT3G27920.1 58.654 104 43 0 13 116 15 118 1.65e-40 140
Msa1015560 AT5G52260.1 63.107 103 38 0 13 115 13 115 3.28e-40 140
Msa1015560 AT5G26660.2 64.078 103 32 2 45 146 14 112 4.58e-40 141
Msa1015560 AT5G14750.1 59.615 104 42 0 13 116 17 120 7.05e-40 137
Msa1015560 AT5G06100.1 54.630 108 49 0 8 115 28 135 9.06e-40 143
Msa1015560 AT2G32460.1 53.846 130 57 2 11 140 17 143 1.09e-39 144
Msa1015560 AT2G32460.2 60.000 105 42 0 11 115 5 109 1.31e-39 143
Msa1015560 AT5G55020.1 59.259 108 44 0 10 117 24 131 1.43e-39 144
Msa1015560 AT5G06100.5 54.630 108 49 0 8 115 28 135 3.16e-39 143
Msa1015560 AT5G06100.2 54.630 108 49 0 8 115 28 135 3.16e-39 143
Msa1015560 AT5G06100.3 54.630 108 49 0 8 115 28 135 3.16e-39 143
Msa1015560 AT5G06100.4 54.630 108 49 0 8 115 28 135 3.16e-39 143
Msa1015560 AT3G24310.1 60.748 107 42 0 11 117 17 123 6.18e-39 137
Msa1015560 AT5G40330.1 57.692 104 44 0 13 116 13 116 1.27e-38 135
Msa1015560 AT4G13480.1 61.905 105 40 0 13 117 7 111 1.38e-38 136
Msa1015560 AT3G30210.1 51.969 127 61 0 11 137 26 152 1.93e-38 136
Msa1015560 AT3G11440.2 54.808 104 47 0 12 115 41 144 2.42e-38 140
Msa1015560 AT2G47190.1 54.955 111 50 0 12 122 20 130 3.06e-38 135
Msa1015560 AT2G26960.1 55.752 113 49 1 9 121 17 128 3.71e-38 139
Msa1015560 AT3G11440.3 54.808 104 47 0 12 115 41 144 7.14e-38 140
Msa1015560 AT3G11440.4 54.808 104 47 0 12 115 41 144 7.14e-38 140
Msa1015560 AT3G11440.1 54.808 104 47 0 12 115 41 144 7.14e-38 140
Msa1015560 AT4G26930.1 56.190 105 46 0 10 114 17 121 1.08e-37 137
Msa1015560 AT4G25560.1 59.223 103 42 0 13 115 11 113 2.93e-37 133
Msa1015560 AT5G49620.1 53.913 115 53 0 8 122 22 136 5.30e-37 133
Msa1015560 AT5G59780.3 57.547 106 45 0 12 117 8 113 6.81e-37 130
Msa1015560 AT3G46130.1 57.009 107 46 0 11 117 8 114 7.39e-37 131
Msa1015560 AT5G35550.1 59.048 105 43 0 12 116 14 118 1.11e-36 130
Msa1015560 AT1G25340.2 50.427 117 53 1 13 129 19 130 1.28e-36 131
Msa1015560 AT1G25340.3 50.427 117 53 1 13 129 19 130 2.26e-36 131
Msa1015560 AT3G48920.1 54.902 102 46 0 13 114 19 120 4.37e-35 127
Msa1015560 AT3G53200.1 57.692 104 44 0 12 115 9 112 7.93e-34 123
Msa1015560 AT5G52600.1 45.522 134 64 1 9 133 9 142 1.31e-33 121
Msa1015560 AT5G49620.2 48.062 129 53 1 8 122 22 150 2.38e-33 124
Msa1015560 AT3G12820.2 77.143 70 16 0 47 116 1 70 1.12e-32 118
Msa1015560 AT5G14750.3 61.905 84 27 1 38 116 3 86 1.37e-31 115
Msa1015560 AT1G66370.1 51.304 115 52 1 1 115 1 111 2.76e-31 116
Msa1015560 AT2G26950.1 48.673 113 57 1 9 121 13 124 7.91e-31 118
Msa1015560 AT3G47600.2 54.369 103 43 1 15 117 13 111 9.66e-31 117
Msa1015560 AT1G66380.1 55.238 105 47 0 11 115 7 111 2.25e-30 111
Msa1015560 AT3G27810.2 67.123 73 24 0 45 117 4 76 4.39e-30 111
Msa1015560 AT5G40350.2 68.056 72 23 0 45 116 5 76 6.84e-30 110
Msa1015560 AT1G56650.1 41.935 155 74 2 11 149 7 161 2.95e-29 111
Msa1015560 AT5G35550.2 55.789 95 39 1 25 116 27 121 5.51e-29 110
Msa1015560 AT3G60460.1 44.954 109 59 1 12 119 11 119 3.51e-28 109
Msa1015560 AT1G66390.1 54.286 105 48 0 11 115 7 111 4.26e-28 108
Msa1015560 AT3G46130.3 63.514 74 27 0 44 117 9 82 4.66e-27 105
Msa1015560 AT3G09230.1 35.119 168 105 3 14 179 55 220 5.39e-27 108
Msa1015560 AT1G18960.1 44.828 116 61 2 14 129 10 122 6.21e-27 106
Msa1015560 AT5G58850.1 47.619 105 52 2 12 115 103 205 7.75e-27 108
Msa1015560 AT5G59780.2 64.384 73 26 0 45 117 20 92 1.08e-26 103
Msa1015560 AT1G69560.1 39.041 146 79 3 9 153 102 238 1.18e-26 106
Msa1015560 AT3G46130.4 64.384 73 26 0 45 117 20 92 1.40e-26 103
Msa1015560 AT1G69560.2 39.041 146 79 3 9 153 118 254 1.52e-26 106
Msa1015560 AT1G22640.3 65.278 72 25 0 58 129 1 72 1.96e-26 102
Msa1015560 AT2G23290.1 49.515 103 49 2 14 115 13 113 2.31e-26 105
Msa1015560 AT5G02320.1 45.238 126 62 3 12 132 125 248 9.38e-26 106
Msa1015560 AT5G02320.2 45.238 126 62 3 12 132 125 248 9.38e-26 106
Msa1015560 AT5G02320.3 45.238 126 62 3 12 132 65 188 1.13e-25 105
Msa1015560 AT3G53200.2 66.197 71 24 0 45 115 9 79 1.20e-25 100
Msa1015560 AT1G71030.2 55.844 77 34 0 51 127 5 81 3.02e-25 99.0
Msa1015560 AT1G71030.1 55.844 77 34 0 51 127 19 95 3.80e-25 99.4
Msa1015560 AT3G09370.2 45.946 111 57 2 12 121 133 241 5.41e-25 103
Msa1015560 AT3G09370.1 45.946 111 57 2 12 121 128 236 6.00e-25 103
Msa1015560 AT4G37260.1 44.444 108 57 2 14 120 13 118 1.02e-24 100
Msa1015560 AT3G09370.3 45.946 111 57 2 12 121 141 249 1.23e-24 102
Msa1015560 AT5G11050.1 43.689 103 55 2 14 115 105 205 2.30e-24 101
Msa1015560 AT1G17950.1 48.544 103 50 2 14 115 5 105 3.60e-24 97.8
Msa1015560 AT1G26780.1 46.729 107 54 2 12 117 96 200 4.09e-24 98.6
Msa1015560 AT3G27785.1 46.296 108 55 2 9 115 184 289 6.52e-24 100
Msa1015560 AT1G26780.2 46.729 107 54 2 12 117 96 200 6.93e-24 99.4
Msa1015560 AT2G39880.1 47.573 103 51 2 14 115 50 150 7.94e-24 99.4
Msa1015560 AT3G55730.1 45.794 107 55 2 14 119 56 160 1.92e-23 98.6
Msa1015560 AT5G67300.1 43.689 103 55 2 14 115 6 106 2.46e-23 97.1
Msa1015560 AT4G18770.1 42.202 109 60 2 9 116 212 318 2.77e-23 98.2
Msa1015560 AT3G50060.1 42.718 103 56 2 14 115 6 106 3.14e-22 94.0
Msa1015560 AT1G66380.3 58.904 73 30 0 43 115 6 78 4.46e-22 88.6
Msa1015560 AT1G73410.1 47.619 105 52 2 14 117 6 108 4.69e-22 92.0
Msa1015560 AT5G14340.2 42.373 177 81 8 88 258 10 171 5.48e-22 90.5
Msa1015560 AT5G11510.3 44.340 106 56 2 12 116 79 182 5.75e-22 95.5
Msa1015560 AT5G11510.1 44.340 106 56 2 12 116 79 182 5.75e-22 95.5
Msa1015560 AT5G11510.4 44.340 106 56 2 12 116 79 182 5.75e-22 95.5
Msa1015560 AT4G32730.1 37.795 127 72 3 12 133 85 209 6.93e-22 95.1
Msa1015560 AT4G32730.5 41.509 106 59 2 12 116 85 188 7.07e-22 95.5
Msa1015560 AT4G32730.4 41.509 106 59 2 12 116 85 188 7.07e-22 95.5
Msa1015560 AT4G32730.3 41.509 106 59 2 12 116 85 188 7.07e-22 95.5
Msa1015560 AT4G32730.2 41.509 106 59 2 12 116 85 188 7.07e-22 95.5
Msa1015560 AT5G11510.2 44.340 106 56 2 12 116 79 182 7.75e-22 95.1
Msa1015560 AT5G11510.5 44.340 106 56 2 12 116 79 182 9.54e-22 94.7
Msa1015560 AT3G23250.2 66.667 60 20 0 58 117 1 60 9.92e-22 90.9
Msa1015560 AT1G73410.2 47.619 105 52 2 14 117 6 108 1.30e-21 90.1
Msa1015560 AT5G14750.4 66.102 59 20 0 58 116 1 59 2.27e-21 87.8
Msa1015560 AT5G14750.2 66.102 59 20 0 58 116 1 59 2.27e-21 87.8
Msa1015560 AT3G29020.1 40.000 105 60 2 14 117 65 167 4.46e-21 89.4
Msa1015560 AT5G17800.1 41.346 104 60 1 14 117 93 195 5.34e-21 90.9
Msa1015560 AT3G29020.2 40.000 105 60 2 14 117 67 169 5.93e-21 90.5
Msa1015560 AT4G33450.1 40.351 114 60 3 3 115 13 119 9.43e-21 89.0
Msa1015560 AT5G40360.1 38.835 103 62 1 12 114 156 257 2.85e-20 89.4
Msa1015560 AT2G25230.1 43.158 95 51 2 17 110 29 121 6.32e-19 83.6
Msa1015560 AT1G66380.2 50.000 86 43 0 11 96 7 92 1.21e-18 79.3
Msa1015560 AT4G00540.2 41.818 110 58 3 12 117 101 208 4.22e-17 80.5
Msa1015560 AT4G00540.1 41.818 110 58 3 12 117 99 206 6.36e-17 80.1
Msa1015560 AT5G39700.1 33.884 121 79 1 15 135 57 176 7.56e-17 77.0
Msa1015560 AT5G61420.1 55.385 65 28 1 81 144 2 66 5.72e-16 76.3
Msa1015560 AT2G37630.1 38.000 100 60 1 13 110 3 102 1.12e-14 73.6
Msa1015560 AT5G40430.1 34.314 102 65 1 9 110 49 148 2.94e-14 70.9
Msa1015560 AT2G02820.3 34.862 109 70 1 17 125 33 140 1.06e-13 70.5
Msa1015560 AT2G02820.1 35.238 105 67 1 17 121 33 136 1.13e-13 70.9
Msa1015560 AT2G02820.2 35.238 105 67 1 17 121 33 136 1.20e-13 70.9
Msa1015560 AT4G28110.2 68.293 41 13 0 88 128 4 44 1.92e-13 67.8
Msa1015560 AT1G14350.2 37.255 102 61 2 17 117 28 127 2.78e-13 69.7
Msa1015560 AT1G14350.1 37.255 102 61 2 17 117 28 127 2.78e-13 69.7
Msa1015560 AT5G15310.3 68.293 41 13 0 88 128 9 49 4.90e-13 67.4
Msa1015560 AT5G59780.1 58.333 48 20 0 70 117 1 48 1.80e-12 64.3
Msa1015560 AT3G46130.2 58.333 48 20 0 70 117 1 48 3.14e-12 64.3
Msa1015560 AT1G74650.3 64.286 42 15 0 78 119 2 43 2.92e-11 62.4
Msa1015560 AT4G25560.2 59.524 42 17 0 74 115 6 47 3.53e-11 61.6
Msa1015560 AT1G74430.2 49.020 51 26 0 87 137 18 68 3.82e-11 61.2
Msa1015560 AT1G22640.2 64.286 42 15 0 88 129 16 57 4.92e-11 60.8
Msa1015560 AT3G28910.2 66.667 39 13 0 78 116 2 40 7.87e-11 61.2
Msa1015560 AT3G18100.4 32.292 96 64 1 13 108 384 478 9.24e-11 62.4

Find 58 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAACCCTCTTGGAATATT+TGG 0.126877 7_1:-28677609 None:intergenic
TGAAATGCTATGTTCAAATT+TGG 0.152998 7_1:+28677752 Msa1015560:CDS
CTTAAGAGGTTCAAAGAAAA+TGG 0.197461 7_1:+28676504 Msa1015560:exon
CTCTTGGAATATTTGGTTCT+TGG 0.210662 7_1:-28677602 None:intergenic
AACAATGAATCCCATTATTA+AGG 0.275432 7_1:-28676609 None:intergenic
GCTATGTTCAAATTTGGATT+TGG 0.302121 7_1:+28677758 Msa1015560:CDS
ACAAAATTCTTTACAACAAT+GGG 0.343514 7_1:+28677890 Msa1015560:CDS
AAATATTTACCTGCAAGTTT+AGG 0.344140 7_1:-28676643 None:intergenic
CAGTAAAACCACCTCTCTTA+AGG 0.350372 7_1:-28676812 None:intergenic
ATTTCATTGTCAGTTCTTCC+TGG 0.356916 7_1:-28677459 None:intergenic
ACAATTGGCTTGTGGTTCAC+TGG 0.364593 7_1:-28677537 None:intergenic
TTGCACTAGTGTTGGTGTCT+TGG 0.367675 7_1:-28677794 None:intergenic
TACATGCCCGTCTTGGTAAC+AGG 0.388478 7_1:+28676862 Msa1015560:CDS
TTCAAAGGTAAAGTCTTAAG+AGG 0.397371 7_1:+28676490 Msa1015560:five_prime_UTR
TTAATAATGGGATTCATTGT+TGG 0.399119 7_1:+28676611 Msa1015560:CDS
AGAATGGTTCCTAAACTTGC+AGG 0.410051 7_1:+28676634 Msa1015560:CDS
AAATGTGGAGATTAAATCCT+TGG 0.423182 7_1:+28677635 Msa1015560:CDS
ACAATGAAATTAAGAATCAT+TGG 0.428875 7_1:+28677472 Msa1015560:CDS
AACAAAATTCTTTACAACAA+TGG 0.442481 7_1:+28677889 Msa1015560:CDS
TGGGATTCATTGTTGGAGAA+TGG 0.443481 7_1:+28676618 Msa1015560:CDS
AAGAAGAAGCTGAAGTTCCT+TGG 0.445609 7_1:+28677507 Msa1015560:CDS
TGAGATGGATTAATTATTTG+AGG 0.448610 7_1:+28676784 Msa1015560:CDS
CCCCACATGTGGTGGAATTG+AGG 0.458841 7_1:-28678318 None:intergenic
CAATTGGCTTGTGGTTCACT+GGG 0.466873 7_1:-28677536 None:intergenic
TTAAGAGGTTCAAAGAAAAT+GGG 0.482047 7_1:+28676505 Msa1015560:exon
GAGAAGAAAACAAGGTGACT+TGG 0.491688 7_1:+28677700 Msa1015560:CDS
AAACCACCTCTCTTAAGGTC+TGG 0.517152 7_1:-28676807 None:intergenic
CCCACATGTGGTGGAATTGA+GGG 0.520355 7_1:-28678317 None:intergenic
AACAGAATTTGCACTAGTGT+TGG 0.522420 7_1:-28677802 None:intergenic
AGAAGAAAACAAGGTGACTT+GGG 0.527512 7_1:+28677701 Msa1015560:CDS
TTTGAAGGTCTTCTAAGATG+TGG 0.533534 7_1:+28676747 Msa1015560:intron
CAAATTTGGATTTGGAGACA+TGG 0.538450 7_1:+28677766 Msa1015560:CDS
TGATCTTCCTCAATAGTCCA+TGG 0.541020 7_1:-28676568 None:intergenic
TCCCTCAATTCCACCACATG+TGG 0.541199 7_1:+28678316 Msa1015560:CDS
AAGAGGGTTTAAAGAAAATG+TGG 0.542279 7_1:+28677620 Msa1015560:CDS
ATACAACTACATGCCCGTCT+TGG 0.546437 7_1:+28676855 Msa1015560:CDS
GTTGTACCTGTTACCAAGAC+GGG 0.553249 7_1:-28676868 None:intergenic
CAACCATGTTGTGATAAGGT+TGG 0.554200 7_1:+28676532 Msa1015560:CDS
GAAAGAGTTGTAGATTGAGA+TGG 0.557753 7_1:+28676769 Msa1015560:CDS
GATAAGGTTGGTTTGAAGAG+AGG 0.562058 7_1:+28676544 Msa1015560:CDS
GTCTTCAGCCCCACATGTGG+TGG 0.565505 7_1:-28678326 None:intergenic
GGAATTGAGGGATGCTGTTG+AGG 0.566215 7_1:-28678305 None:intergenic
ATTAAATCCTTGGAAAGTGA+TGG 0.567935 7_1:+28677645 Msa1015560:CDS
CCCTCAATTCCACCACATGT+GGG 0.568460 7_1:+28678317 Msa1015560:CDS
GAGAGGACCATGGACTATTG+AGG 0.574885 7_1:+28676561 Msa1015560:CDS
AGGCCAGACCTTAAGAGAGG+TGG 0.579334 7_1:+28676804 Msa1015560:CDS
AAGACAACCATGTTGTGATA+AGG 0.590627 7_1:+28676528 Msa1015560:CDS
TTGAGGCCAGACCTTAAGAG+AGG 0.617024 7_1:+28676801 Msa1015560:CDS
AGGATTCATCAATAGAAATG+TGG 0.634379 7_1:-28677857 None:intergenic
CAAGTCTTCAGCCCCACATG+TGG 0.637609 7_1:-28678329 None:intergenic
AAGAACCAAATATTCCAAGA+GGG 0.640702 7_1:+28677604 Msa1015560:CDS
AAACCAACCTTATCACAACA+TGG 0.641918 7_1:-28676535 None:intergenic
CCTCAATTCCACCACATGTG+GGG 0.643841 7_1:+28678318 Msa1015560:CDS
TGTTGTACCTGTTACCAAGA+CGG 0.646872 7_1:-28676869 None:intergenic
CAAGAACCAAATATTCCAAG+AGG 0.654416 7_1:+28677603 Msa1015560:CDS
ATGGAAAAGAGAAGAAAACA+AGG 0.663052 7_1:+28677692 Msa1015560:CDS
TTGGTTTGAAGAGAGGACCA+TGG 0.663165 7_1:+28676551 Msa1015560:CDS
GGTTCACTGGGTCTAAACCA+AGG 0.715541 7_1:-28677524 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTATCCTTAATAAT+GGG + chr7_1:28676599-28676618 Msa1015560:CDS 15.0%
!!! AATATTTTTATCATCATCAA+GGG - chr7_1:28677577-28677596 None:intergenic 15.0%
!!! TAATATTTTTATCATCATCA+AGG - chr7_1:28677578-28677597 None:intergenic 15.0%
!!! TCATTTTCTCAAATTTTTAT+CGG - chr7_1:28678053-28678072 None:intergenic 15.0%
!!! TGAATTTTATCCTTAATAAT+GGG + chr7_1:28676599-28676618 Msa1015560:CDS 15.0%
!!! AATATTTTTATCATCATCAA+GGG - chr7_1:28677577-28677596 None:intergenic 15.0%
!!! TAATATTTTTATCATCATCA+AGG - chr7_1:28677578-28677597 None:intergenic 15.0%
!!! TCATTTTCTCAAATTTTTAT+CGG - chr7_1:28678053-28678072 None:intergenic 15.0%
!!! GTGAATTTTATCCTTAATAA+TGG + chr7_1:28676598-28676617 Msa1015560:CDS 20.0%
!! ATAGATAAGTTTCATTGAAA+AGG + chr7_1:28676702-28676721 Msa1015560:intron 20.0%
!! TGTTATACTACAGTAAATTA+TGG + chr7_1:28677010-28677029 Msa1015560:intron 20.0%
!! AAAGTCAAATCATTATATTG+TGG + chr7_1:28677078-28677097 Msa1015560:intron 20.0%
!! CTTTATATTGTAGTAAAATG+CGG + chr7_1:28677201-28677220 Msa1015560:intron 20.0%
!!! CAAATCACAATTTAAAACTA+TGG + chr7_1:28677290-28677309 Msa1015560:intron 20.0%
!! ACAATGAAATTAAGAATCAT+TGG + chr7_1:28677472-28677491 Msa1015560:CDS 20.0%
!! AACAAAATTCTTTACAACAA+TGG + chr7_1:28677889-28677908 Msa1015560:CDS 20.0%
!! ACAAAATTCTTTACAACAAT+GGG + chr7_1:28677890-28677909 Msa1015560:CDS 20.0%
!! TTCCAAAAAAAGAAATATCT+TGG - chr7_1:28677965-28677984 None:intergenic 20.0%
!!! TGTTACATTTTATTGCTTTA+GGG - chr7_1:28678163-28678182 None:intergenic 20.0%
!!! GTGAATTTTATCCTTAATAA+TGG + chr7_1:28676598-28676617 Msa1015560:CDS 20.0%
!! ATAGATAAGTTTCATTGAAA+AGG + chr7_1:28676702-28676721 Msa1015560:intron 20.0%
!! TGTTATACTACAGTAAATTA+TGG + chr7_1:28677010-28677029 Msa1015560:intron 20.0%
!! AAAGTCAAATCATTATATTG+TGG + chr7_1:28677078-28677097 Msa1015560:intron 20.0%
!! CTTTATATTGTAGTAAAATG+CGG + chr7_1:28677201-28677220 Msa1015560:intron 20.0%
!!! CAAATCACAATTTAAAACTA+TGG + chr7_1:28677290-28677309 Msa1015560:intron 20.0%
!! ACAATGAAATTAAGAATCAT+TGG + chr7_1:28677472-28677491 Msa1015560:CDS 20.0%
!! AACAAAATTCTTTACAACAA+TGG + chr7_1:28677889-28677908 Msa1015560:CDS 20.0%
!! ACAAAATTCTTTACAACAAT+GGG + chr7_1:28677890-28677909 Msa1015560:CDS 20.0%
!! TTCCAAAAAAAGAAATATCT+TGG - chr7_1:28677965-28677984 None:intergenic 20.0%
!!! TGTTACATTTTATTGCTTTA+GGG - chr7_1:28678163-28678182 None:intergenic 20.0%
!! TGGTATCTTGATATTTTCAA+AGG + chr7_1:28676475-28676494 Msa1015560:five_prime_UTR 25.0%
! TTAAGAGGTTCAAAGAAAAT+GGG + chr7_1:28676505-28676524 Msa1015560:exon 25.0%
! AACAATGAATCCCATTATTA+AGG - chr7_1:28676612-28676631 None:intergenic 25.0%
!! TTAATAATGGGATTCATTGT+TGG + chr7_1:28676611-28676630 Msa1015560:CDS 25.0%
! AAATATTTACCTGCAAGTTT+AGG - chr7_1:28676646-28676665 None:intergenic 25.0%
!!! TGAGATGGATTAATTATTTG+AGG + chr7_1:28676784-28676803 Msa1015560:CDS 25.0%
!! TATAATGATTTGACTTTGAG+AGG - chr7_1:28677075-28677094 None:intergenic 25.0%
!! CGCATTTTACTACAATATAA+AGG - chr7_1:28677203-28677222 None:intergenic 25.0%
! GTGAAATATGAATCTAGTAT+TGG + chr7_1:28677347-28677366 Msa1015560:intron 25.0%
!!! TTGGTTTTAAAACAATGCAA+TGG + chr7_1:28677366-28677385 Msa1015560:intron 25.0%
!!! CATAATTACGCACATTTTTT+AGG + chr7_1:28677412-28677431 Msa1015560:intron 25.0%
! CACAAAAGAAATGACAAAAA+CGG + chr7_1:28677668-28677687 Msa1015560:CDS 25.0%
! TGAAATGCTATGTTCAAATT+TGG + chr7_1:28677752-28677771 Msa1015560:CDS 25.0%
!! TAAAGAATTTTGTTGAAGGT+AGG - chr7_1:28677883-28677902 None:intergenic 25.0%
!! GTTGTAAAGAATTTTGTTGA+AGG - chr7_1:28677887-28677906 None:intergenic 25.0%
! AAAAAAGAAATATCTTGGTC+AGG - chr7_1:28677960-28677979 None:intergenic 25.0%
!!! GACCAAGATATTTCTTTTTT+TGG + chr7_1:28677960-28677979 Msa1015560:intron 25.0%
!! CTGTTACATTTTATTGCTTT+AGG - chr7_1:28678164-28678183 None:intergenic 25.0%
!! TGGTATCTTGATATTTTCAA+AGG + chr7_1:28676475-28676494 Msa1015560:five_prime_UTR 25.0%
! TTAAGAGGTTCAAAGAAAAT+GGG + chr7_1:28676505-28676524 Msa1015560:exon 25.0%
! AACAATGAATCCCATTATTA+AGG - chr7_1:28676612-28676631 None:intergenic 25.0%
!! TTAATAATGGGATTCATTGT+TGG + chr7_1:28676611-28676630 Msa1015560:CDS 25.0%
! AAATATTTACCTGCAAGTTT+AGG - chr7_1:28676646-28676665 None:intergenic 25.0%
!!! TGAGATGGATTAATTATTTG+AGG + chr7_1:28676784-28676803 Msa1015560:CDS 25.0%
!! TATAATGATTTGACTTTGAG+AGG - chr7_1:28677075-28677094 None:intergenic 25.0%
!! CGCATTTTACTACAATATAA+AGG - chr7_1:28677203-28677222 None:intergenic 25.0%
! GTGAAATATGAATCTAGTAT+TGG + chr7_1:28677347-28677366 Msa1015560:intron 25.0%
!!! TTGGTTTTAAAACAATGCAA+TGG + chr7_1:28677366-28677385 Msa1015560:intron 25.0%
!!! CATAATTACGCACATTTTTT+AGG + chr7_1:28677412-28677431 Msa1015560:intron 25.0%
! CACAAAAGAAATGACAAAAA+CGG + chr7_1:28677668-28677687 Msa1015560:CDS 25.0%
! TGAAATGCTATGTTCAAATT+TGG + chr7_1:28677752-28677771 Msa1015560:CDS 25.0%
!! TAAAGAATTTTGTTGAAGGT+AGG - chr7_1:28677883-28677902 None:intergenic 25.0%
!! GTTGTAAAGAATTTTGTTGA+AGG - chr7_1:28677887-28677906 None:intergenic 25.0%
! AAAAAAGAAATATCTTGGTC+AGG - chr7_1:28677960-28677979 None:intergenic 25.0%
!!! GACCAAGATATTTCTTTTTT+TGG + chr7_1:28677960-28677979 Msa1015560:intron 25.0%
!! CTGTTACATTTTATTGCTTT+AGG - chr7_1:28678164-28678183 None:intergenic 25.0%
TTCAAAGGTAAAGTCTTAAG+AGG + chr7_1:28676490-28676509 Msa1015560:five_prime_UTR 30.0%
CTTAAGAGGTTCAAAGAAAA+TGG + chr7_1:28676504-28676523 Msa1015560:exon 30.0%
!! TTGAAAAGGTGTTTCTAACA+TGG + chr7_1:28676716-28676735 Msa1015560:intron 30.0%
!! AACATGGTGCATATTTTTGA+AGG + chr7_1:28676732-28676751 Msa1015560:intron 30.0%
GAGACTATTGTGAATAACTT+AGG - chr7_1:28676931-28676950 None:intergenic 30.0%
! TAAACCATAGTCTTAAAGTG+CGG - chr7_1:28677123-28677142 None:intergenic 30.0%
CCTCTCAAATTGTATTGTTA+CGG + chr7_1:28677264-28677283 Msa1015560:intron 30.0%
! ACAATTTAAAACTATGGTCG+AGG + chr7_1:28677296-28677315 Msa1015560:intron 30.0%
! CAATTTAAAACTATGGTCGA+GGG + chr7_1:28677297-28677316 Msa1015560:intron 30.0%
!!! AATTACGCACATTTTTTAGG+TGG + chr7_1:28677415-28677434 Msa1015560:intron 30.0%
AAGAACCAAATATTCCAAGA+GGG + chr7_1:28677604-28677623 Msa1015560:CDS 30.0%
TTAAACCCTCTTGGAATATT+TGG - chr7_1:28677612-28677631 None:intergenic 30.0%
! ACATTTTCTTTAAACCCTCT+TGG - chr7_1:28677621-28677640 None:intergenic 30.0%
AAGAGGGTTTAAAGAAAATG+TGG + chr7_1:28677620-28677639 Msa1015560:CDS 30.0%
AAATGTGGAGATTAAATCCT+TGG + chr7_1:28677635-28677654 Msa1015560:CDS 30.0%
ATTAAATCCTTGGAAAGTGA+TGG + chr7_1:28677645-28677664 Msa1015560:CDS 30.0%
AAGAAATGACAAAAACGGAA+TGG + chr7_1:28677673-28677692 Msa1015560:CDS 30.0%
ATGGAAAAGAGAAGAAAACA+AGG + chr7_1:28677692-28677711 Msa1015560:CDS 30.0%
GCTATGTTCAAATTTGGATT+TGG + chr7_1:28677758-28677777 Msa1015560:CDS 30.0%
AGGATTCATCAATAGAAATG+TGG - chr7_1:28677860-28677879 None:intergenic 30.0%
! TGTCTGAAGTATACATATCT+CGG - chr7_1:28678130-28678149 None:intergenic 30.0%
!!! TTATCCCTGCATTTTGTTTT+TGG + chr7_1:28678211-28678230 Msa1015560:intron 30.0%
TTCAAAGGTAAAGTCTTAAG+AGG + chr7_1:28676490-28676509 Msa1015560:five_prime_UTR 30.0%
CTTAAGAGGTTCAAAGAAAA+TGG + chr7_1:28676504-28676523 Msa1015560:exon 30.0%
!! TTGAAAAGGTGTTTCTAACA+TGG + chr7_1:28676716-28676735 Msa1015560:intron 30.0%
!! AACATGGTGCATATTTTTGA+AGG + chr7_1:28676732-28676751 Msa1015560:intron 30.0%
GAGACTATTGTGAATAACTT+AGG - chr7_1:28676931-28676950 None:intergenic 30.0%
! TAAACCATAGTCTTAAAGTG+CGG - chr7_1:28677123-28677142 None:intergenic 30.0%
CCTCTCAAATTGTATTGTTA+CGG + chr7_1:28677264-28677283 Msa1015560:intron 30.0%
! ACAATTTAAAACTATGGTCG+AGG + chr7_1:28677296-28677315 Msa1015560:intron 30.0%
! CAATTTAAAACTATGGTCGA+GGG + chr7_1:28677297-28677316 Msa1015560:intron 30.0%
!!! AATTACGCACATTTTTTAGG+TGG + chr7_1:28677415-28677434 Msa1015560:intron 30.0%
AAGAACCAAATATTCCAAGA+GGG + chr7_1:28677604-28677623 Msa1015560:CDS 30.0%
TTAAACCCTCTTGGAATATT+TGG - chr7_1:28677612-28677631 None:intergenic 30.0%
! ACATTTTCTTTAAACCCTCT+TGG - chr7_1:28677621-28677640 None:intergenic 30.0%
AAGAGGGTTTAAAGAAAATG+TGG + chr7_1:28677620-28677639 Msa1015560:CDS 30.0%
AAATGTGGAGATTAAATCCT+TGG + chr7_1:28677635-28677654 Msa1015560:CDS 30.0%
ATTAAATCCTTGGAAAGTGA+TGG + chr7_1:28677645-28677664 Msa1015560:CDS 30.0%
AAGAAATGACAAAAACGGAA+TGG + chr7_1:28677673-28677692 Msa1015560:CDS 30.0%
ATGGAAAAGAGAAGAAAACA+AGG + chr7_1:28677692-28677711 Msa1015560:CDS 30.0%
GCTATGTTCAAATTTGGATT+TGG + chr7_1:28677758-28677777 Msa1015560:CDS 30.0%
AGGATTCATCAATAGAAATG+TGG - chr7_1:28677860-28677879 None:intergenic 30.0%
! TGTCTGAAGTATACATATCT+CGG - chr7_1:28678130-28678149 None:intergenic 30.0%
!!! TTATCCCTGCATTTTGTTTT+TGG + chr7_1:28678211-28678230 Msa1015560:intron 30.0%
AAGACAACCATGTTGTGATA+AGG + chr7_1:28676528-28676547 Msa1015560:CDS 35.0%
AAACCAACCTTATCACAACA+TGG - chr7_1:28676538-28676557 None:intergenic 35.0%
!! TTTGAAGGTCTTCTAAGATG+TGG + chr7_1:28676747-28676766 Msa1015560:intron 35.0%
GAAAGAGTTGTAGATTGAGA+TGG + chr7_1:28676769-28676788 Msa1015560:CDS 35.0%
!! TGGTTTTACTGAAATGGAAG+AGG + chr7_1:28676824-28676843 Msa1015560:CDS 35.0%
CCGTAACAATACAATTTGAG+AGG - chr7_1:28677267-28677286 None:intergenic 35.0%
! AAGATTGCTTCACATTTTCC+AGG + chr7_1:28677441-28677460 Msa1015560:CDS 35.0%
ATTTCATTGTCAGTTCTTCC+TGG - chr7_1:28677462-28677481 None:intergenic 35.0%
!!! GTTTGTTGCTTTTGCACAAT+TGG - chr7_1:28677555-28677574 None:intergenic 35.0%
!! CTCTTGGAATATTTGGTTCT+TGG - chr7_1:28677605-28677624 None:intergenic 35.0%
CAAGAACCAAATATTCCAAG+AGG + chr7_1:28677603-28677622 Msa1015560:CDS 35.0%
AGAAGAAAACAAGGTGACTT+GGG + chr7_1:28677701-28677720 Msa1015560:CDS 35.0%
CAAATTTGGATTTGGAGACA+TGG + chr7_1:28677766-28677785 Msa1015560:CDS 35.0%
AACAGAATTTGCACTAGTGT+TGG - chr7_1:28677805-28677824 None:intergenic 35.0%
! AGAATTTTGTTGAAGGTAGG+AGG - chr7_1:28677880-28677899 None:intergenic 35.0%
!! ACAACAATGGGTTGATAGTA+TGG + chr7_1:28677902-28677921 Msa1015560:intron 35.0%
! GTCTGAAGTATACATATCTC+GGG - chr7_1:28678129-28678148 None:intergenic 35.0%
!!! CATTTTATTGCTTTAGGGAG+TGG - chr7_1:28678158-28678177 None:intergenic 35.0%
GCAACCAAAAACAAAATGCA+GGG - chr7_1:28678218-28678237 None:intergenic 35.0%
TGCAACCAAAAACAAAATGC+AGG - chr7_1:28678219-28678238 None:intergenic 35.0%
AAGACAACCATGTTGTGATA+AGG + chr7_1:28676528-28676547 Msa1015560:CDS 35.0%
AAACCAACCTTATCACAACA+TGG - chr7_1:28676538-28676557 None:intergenic 35.0%
!! TTTGAAGGTCTTCTAAGATG+TGG + chr7_1:28676747-28676766 Msa1015560:intron 35.0%
GAAAGAGTTGTAGATTGAGA+TGG + chr7_1:28676769-28676788 Msa1015560:CDS 35.0%
!! TGGTTTTACTGAAATGGAAG+AGG + chr7_1:28676824-28676843 Msa1015560:CDS 35.0%
CCGTAACAATACAATTTGAG+AGG - chr7_1:28677267-28677286 None:intergenic 35.0%
! AAGATTGCTTCACATTTTCC+AGG + chr7_1:28677441-28677460 Msa1015560:CDS 35.0%
ATTTCATTGTCAGTTCTTCC+TGG - chr7_1:28677462-28677481 None:intergenic 35.0%
!!! GTTTGTTGCTTTTGCACAAT+TGG - chr7_1:28677555-28677574 None:intergenic 35.0%
!! CTCTTGGAATATTTGGTTCT+TGG - chr7_1:28677605-28677624 None:intergenic 35.0%
CAAGAACCAAATATTCCAAG+AGG + chr7_1:28677603-28677622 Msa1015560:CDS 35.0%
AGAAGAAAACAAGGTGACTT+GGG + chr7_1:28677701-28677720 Msa1015560:CDS 35.0%
CAAATTTGGATTTGGAGACA+TGG + chr7_1:28677766-28677785 Msa1015560:CDS 35.0%
AACAGAATTTGCACTAGTGT+TGG - chr7_1:28677805-28677824 None:intergenic 35.0%
! AGAATTTTGTTGAAGGTAGG+AGG - chr7_1:28677880-28677899 None:intergenic 35.0%
!! ACAACAATGGGTTGATAGTA+TGG + chr7_1:28677902-28677921 Msa1015560:intron 35.0%
! GTCTGAAGTATACATATCTC+GGG - chr7_1:28678129-28678148 None:intergenic 35.0%
!!! CATTTTATTGCTTTAGGGAG+TGG - chr7_1:28678158-28678177 None:intergenic 35.0%
GCAACCAAAAACAAAATGCA+GGG - chr7_1:28678218-28678237 None:intergenic 35.0%
TGCAACCAAAAACAAAATGC+AGG - chr7_1:28678219-28678238 None:intergenic 35.0%
CAACCATGTTGTGATAAGGT+TGG + chr7_1:28676532-28676551 Msa1015560:CDS 40.0%
!! GATAAGGTTGGTTTGAAGAG+AGG + chr7_1:28676544-28676563 Msa1015560:CDS 40.0%
TGATCTTCCTCAATAGTCCA+TGG - chr7_1:28676571-28676590 None:intergenic 40.0%
TGGGATTCATTGTTGGAGAA+TGG + chr7_1:28676618-28676637 Msa1015560:CDS 40.0%
AGAATGGTTCCTAAACTTGC+AGG + chr7_1:28676634-28676653 Msa1015560:CDS 40.0%
CAGTAAAACCACCTCTCTTA+AGG - chr7_1:28676815-28676834 None:intergenic 40.0%
!! GAGAGGTGGTTTTACTGAAA+TGG + chr7_1:28676818-28676837 Msa1015560:CDS 40.0%
TGTTGTACCTGTTACCAAGA+CGG - chr7_1:28676872-28676891 None:intergenic 40.0%
CATTATATTGTGGTCGCACT+TGG + chr7_1:28677088-28677107 Msa1015560:intron 40.0%
!! TTGTCCGCACTTTAAGACTA+TGG + chr7_1:28677116-28677135 Msa1015560:intron 40.0%
AAGTAGAGTGTGGTAGTTTG+CGG + chr7_1:28677165-28677184 Msa1015560:intron 40.0%
TGTAGTAAAATGCGGTCATG+TGG + chr7_1:28677209-28677228 Msa1015560:intron 40.0%
GTAGTAAAATGCGGTCATGT+GGG + chr7_1:28677210-28677229 Msa1015560:intron 40.0%
AAGAAGAAGCTGAAGTTCCT+TGG + chr7_1:28677507-28677526 Msa1015560:CDS 40.0%
! TTTTGTGCCATCACTTTCCA+AGG - chr7_1:28677655-28677674 None:intergenic 40.0%
GAGAAGAAAACAAGGTGACT+TGG + chr7_1:28677700-28677719 Msa1015560:CDS 40.0%
TATCTTGGTCAGGAAGATTG+AGG - chr7_1:28677950-28677969 None:intergenic 40.0%
GACAAGTGTCAGTGTCATAT+TGG + chr7_1:28678094-28678113 Msa1015560:intron 40.0%
!! TTTATTGCTTTAGGGAGTGG+AGG - chr7_1:28678155-28678174 None:intergenic 40.0%
CAACCATGTTGTGATAAGGT+TGG + chr7_1:28676532-28676551 Msa1015560:CDS 40.0%
!! GATAAGGTTGGTTTGAAGAG+AGG + chr7_1:28676544-28676563 Msa1015560:CDS 40.0%
TGATCTTCCTCAATAGTCCA+TGG - chr7_1:28676571-28676590 None:intergenic 40.0%
TGGGATTCATTGTTGGAGAA+TGG + chr7_1:28676618-28676637 Msa1015560:CDS 40.0%
AGAATGGTTCCTAAACTTGC+AGG + chr7_1:28676634-28676653 Msa1015560:CDS 40.0%
CAGTAAAACCACCTCTCTTA+AGG - chr7_1:28676815-28676834 None:intergenic 40.0%
!! GAGAGGTGGTTTTACTGAAA+TGG + chr7_1:28676818-28676837 Msa1015560:CDS 40.0%
TGTTGTACCTGTTACCAAGA+CGG - chr7_1:28676872-28676891 None:intergenic 40.0%
CATTATATTGTGGTCGCACT+TGG + chr7_1:28677088-28677107 Msa1015560:intron 40.0%
!! TTGTCCGCACTTTAAGACTA+TGG + chr7_1:28677116-28677135 Msa1015560:intron 40.0%
AAGTAGAGTGTGGTAGTTTG+CGG + chr7_1:28677165-28677184 Msa1015560:intron 40.0%
TGTAGTAAAATGCGGTCATG+TGG + chr7_1:28677209-28677228 Msa1015560:intron 40.0%
GTAGTAAAATGCGGTCATGT+GGG + chr7_1:28677210-28677229 Msa1015560:intron 40.0%
AAGAAGAAGCTGAAGTTCCT+TGG + chr7_1:28677507-28677526 Msa1015560:CDS 40.0%
! TTTTGTGCCATCACTTTCCA+AGG - chr7_1:28677655-28677674 None:intergenic 40.0%
GAGAAGAAAACAAGGTGACT+TGG + chr7_1:28677700-28677719 Msa1015560:CDS 40.0%
TATCTTGGTCAGGAAGATTG+AGG - chr7_1:28677950-28677969 None:intergenic 40.0%
GACAAGTGTCAGTGTCATAT+TGG + chr7_1:28678094-28678113 Msa1015560:intron 40.0%
!! TTTATTGCTTTAGGGAGTGG+AGG - chr7_1:28678155-28678174 None:intergenic 40.0%
! TTGGTTTGAAGAGAGGACCA+TGG + chr7_1:28676551-28676570 Msa1015560:CDS 45.0%
AAACCACCTCTCTTAAGGTC+TGG - chr7_1:28676810-28676829 None:intergenic 45.0%
ATACAACTACATGCCCGTCT+TGG + chr7_1:28676855-28676874 Msa1015560:CDS 45.0%
GTTGTACCTGTTACCAAGAC+GGG - chr7_1:28676871-28676890 None:intergenic 45.0%
TCGTGTATGCAAGTAGAGTG+TGG + chr7_1:28677155-28677174 Msa1015560:intron 45.0%
! AGTGTGGTAGTTTGCGGTTA+TGG + chr7_1:28677171-28677190 Msa1015560:intron 45.0%
!! CAATTGGCTTGTGGTTCACT+GGG - chr7_1:28677539-28677558 None:intergenic 45.0%
!! ACAATTGGCTTGTGGTTCAC+TGG - chr7_1:28677540-28677559 None:intergenic 45.0%
!!! GCTTTTGCACAATTGGCTTG+TGG - chr7_1:28677548-28677567 None:intergenic 45.0%
!! TTGCACTAGTGTTGGTGTCT+TGG - chr7_1:28677797-28677816 None:intergenic 45.0%
TATGGACTCCTTTCTCCCAT+GGG + chr7_1:28677920-28677939 Msa1015560:intron 45.0%
! TTGGTTTGAAGAGAGGACCA+TGG + chr7_1:28676551-28676570 Msa1015560:CDS 45.0%
AAACCACCTCTCTTAAGGTC+TGG - chr7_1:28676810-28676829 None:intergenic 45.0%
ATACAACTACATGCCCGTCT+TGG + chr7_1:28676855-28676874 Msa1015560:CDS 45.0%
GTTGTACCTGTTACCAAGAC+GGG - chr7_1:28676871-28676890 None:intergenic 45.0%
TCGTGTATGCAAGTAGAGTG+TGG + chr7_1:28677155-28677174 Msa1015560:intron 45.0%
! AGTGTGGTAGTTTGCGGTTA+TGG + chr7_1:28677171-28677190 Msa1015560:intron 45.0%
!! CAATTGGCTTGTGGTTCACT+GGG - chr7_1:28677539-28677558 None:intergenic 45.0%
!! ACAATTGGCTTGTGGTTCAC+TGG - chr7_1:28677540-28677559 None:intergenic 45.0%
!!! GCTTTTGCACAATTGGCTTG+TGG - chr7_1:28677548-28677567 None:intergenic 45.0%
!! TTGCACTAGTGTTGGTGTCT+TGG - chr7_1:28677797-28677816 None:intergenic 45.0%
TATGGACTCCTTTCTCCCAT+GGG + chr7_1:28677920-28677939 Msa1015560:intron 45.0%
!! AATATATAAAAATATTCAAT+TGG - chr7_1:28678269-28678288 None:intergenic 5.0%
!!! ATATTTTTATATATTTTTCT+TGG + chr7_1:28678274-28678293 Msa1015560:intron 5.0%
!! AATATATAAAAATATTCAAT+TGG - chr7_1:28678269-28678288 None:intergenic 5.0%
!!! ATATTTTTATATATTTTTCT+TGG + chr7_1:28678274-28678293 Msa1015560:intron 5.0%
! GAGAGGACCATGGACTATTG+AGG + chr7_1:28676561-28676580 Msa1015560:CDS 50.0%
TTGAGGCCAGACCTTAAGAG+AGG + chr7_1:28676801-28676820 Msa1015560:CDS 50.0%
! TACATGCCCGTCTTGGTAAC+AGG + chr7_1:28676862-28676881 Msa1015560:CDS 50.0%
GGTGTCTGCAACTACAATCG+TGG - chr7_1:28677054-28677073 None:intergenic 50.0%
GGTTCACTGGGTCTAAACCA+AGG - chr7_1:28677527-28677546 None:intergenic 50.0%
GTATGGACTCCTTTCTCCCA+TGG + chr7_1:28677919-28677938 Msa1015560:intron 50.0%
GAAGATTGAGGCCATCCCAT+GGG - chr7_1:28677938-28677957 None:intergenic 50.0%
GGAATTGAGGGATGCTGTTG+AGG - chr7_1:28678308-28678327 None:intergenic 50.0%
TCCCTCAATTCCACCACATG+TGG + chr7_1:28678316-28678335 Msa1015560:CDS 50.0%
! CCCACATGTGGTGGAATTGA+GGG - chr7_1:28678320-28678339 None:intergenic 50.0%
CCCTCAATTCCACCACATGT+GGG + chr7_1:28678317-28678336 Msa1015560:CDS 50.0%
CCTCAATTCCACCACATGTG+GGG + chr7_1:28678318-28678337 Msa1015560:CDS 50.0%
! GAGAGGACCATGGACTATTG+AGG + chr7_1:28676561-28676580 Msa1015560:CDS 50.0%
TTGAGGCCAGACCTTAAGAG+AGG + chr7_1:28676801-28676820 Msa1015560:CDS 50.0%
! TACATGCCCGTCTTGGTAAC+AGG + chr7_1:28676862-28676881 Msa1015560:CDS 50.0%
GGTGTCTGCAACTACAATCG+TGG - chr7_1:28677054-28677073 None:intergenic 50.0%
GGTTCACTGGGTCTAAACCA+AGG - chr7_1:28677527-28677546 None:intergenic 50.0%
GTATGGACTCCTTTCTCCCA+TGG + chr7_1:28677919-28677938 Msa1015560:intron 50.0%
GAAGATTGAGGCCATCCCAT+GGG - chr7_1:28677938-28677957 None:intergenic 50.0%
GGAATTGAGGGATGCTGTTG+AGG - chr7_1:28678308-28678327 None:intergenic 50.0%
TCCCTCAATTCCACCACATG+TGG + chr7_1:28678316-28678335 Msa1015560:CDS 50.0%
! CCCACATGTGGTGGAATTGA+GGG - chr7_1:28678320-28678339 None:intergenic 50.0%
CCCTCAATTCCACCACATGT+GGG + chr7_1:28678317-28678336 Msa1015560:CDS 50.0%
CCTCAATTCCACCACATGTG+GGG + chr7_1:28678318-28678337 Msa1015560:CDS 50.0%
AGGCCAGACCTTAAGAGAGG+TGG + chr7_1:28676804-28676823 Msa1015560:CDS 55.0%
GACTCCTTTCTCCCATGGGA+TGG + chr7_1:28677924-28677943 Msa1015560:intron 55.0%
GGAAGATTGAGGCCATCCCA+TGG - chr7_1:28677939-28677958 None:intergenic 55.0%
! CCCCACATGTGGTGGAATTG+AGG - chr7_1:28678321-28678340 None:intergenic 55.0%
CAAGTCTTCAGCCCCACATG+TGG - chr7_1:28678332-28678351 None:intergenic 55.0%
AGGCCAGACCTTAAGAGAGG+TGG + chr7_1:28676804-28676823 Msa1015560:CDS 55.0%
GACTCCTTTCTCCCATGGGA+TGG + chr7_1:28677924-28677943 Msa1015560:intron 55.0%
GGAAGATTGAGGCCATCCCA+TGG - chr7_1:28677939-28677958 None:intergenic 55.0%
! CCCCACATGTGGTGGAATTG+AGG - chr7_1:28678321-28678340 None:intergenic 55.0%
CAAGTCTTCAGCCCCACATG+TGG - chr7_1:28678332-28678351 None:intergenic 55.0%
GAGGCCATCCCATGGGAGAA+AGG - chr7_1:28677931-28677950 None:intergenic 60.0%
GTCTTCAGCCCCACATGTGG+TGG - chr7_1:28678329-28678348 None:intergenic 60.0%
GAGGCCATCCCATGGGAGAA+AGG - chr7_1:28677931-28677950 None:intergenic 60.0%
GTCTTCAGCCCCACATGTGG+TGG - chr7_1:28678329-28678348 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 28676473 28678352 28676473 ID=Msa1015560;Name=Msa1015560
chr7_1 mRNA 28676473 28678352 28676473 ID=Msa1015560-mRNA-1;Parent=Msa1015560;Name=Msa1015560-mRNA-1;_AED=0.12;_eAED=0.13;_QI=50|0.66|0.5|0.75|1|1|4|0|265
chr7_1 exon 28676473 28676655 28676473 ID=Msa1015560-mRNA-1:exon:6015;Parent=Msa1015560-mRNA-1
chr7_1 exon 28676754 28676883 28676754 ID=Msa1015560-mRNA-1:exon:6016;Parent=Msa1015560-mRNA-1
chr7_1 exon 28677434 28677918 28677434 ID=Msa1015560-mRNA-1:exon:6017;Parent=Msa1015560-mRNA-1
chr7_1 exon 28678303 28678352 28678303 ID=Msa1015560-mRNA-1:exon:6018;Parent=Msa1015560-mRNA-1
chr7_1 five_prime_UTR 28676473 28676522 28676473 ID=Msa1015560-mRNA-1:five_prime_utr;Parent=Msa1015560-mRNA-1
chr7_1 CDS 28676523 28676655 28676523 ID=Msa1015560-mRNA-1:cds;Parent=Msa1015560-mRNA-1
chr7_1 CDS 28676754 28676883 28676754 ID=Msa1015560-mRNA-1:cds;Parent=Msa1015560-mRNA-1
chr7_1 CDS 28677434 28677918 28677434 ID=Msa1015560-mRNA-1:cds;Parent=Msa1015560-mRNA-1
chr7_1 CDS 28678303 28678352 28678303 ID=Msa1015560-mRNA-1:cds;Parent=Msa1015560-mRNA-1
Gene Sequence

>Msa1015560

ATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTGAAGAGAGGACCATGGACTATTGAGGAAGATCACAAGCTTGTGAATTTTATCCTTAATAATGGGATTCATTGTTGGAGAATGGTTCCTAAACTTGCAGGTCTTCTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGTGGTTTTACTGAAATGGAAGAGGATCAAATTATACAACTACATGCCCGTCTTGGTAACAGGTGGTCAAAGATTGCTTCACATTTTCCAGGAAGAACTGACAATGAAATTAAGAATCATTGGAACACAAAAATCAAGAAGAAGCTGAAGTTCCTTGGTTTAGACCCAGTGAACCACAAGCCAATTGTGCAAAAGCAACAAACCCTTGATGATGATAAAAATATTATTAACCAAGAACCAAATATTCCAAGAGGGTTTAAAGAAAATGTGGAGATTAAATCCTTGGAAAGTGATGGCACAAAAGAAATGACAAAAACGGAATGGAAAAGAGAAGAAAACAAGGTGACTTGGGATGATACTTCTGAACTTTTGAACAATTTTGAAATGCTATGTTCAAATTTGGATTTGGAGACATGGATGAGCCAAGACACCAACACTAGTGCAAATTCTGTTTCTAGTTCTTCAGTCTCTCTTGATAATACTAGCCACATTTCTATTGATGAATCCTCCTACCTTCAACAAAATTCTTTACAACAATGGGTTGATACTCCTCAACAGCATCCCTCAATTCCACCACATGTGGGGCTGAAGACTTGA

Protein sequence

>Msa1015560

MGRQPCCDKVGLKRGPWTIEEDHKLVNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTKIKKKLKFLGLDPVNHKPIVQKQQTLDDDKNIINQEPNIPRGFKENVEIKSLESDGTKEMTKTEWKREENKVTWDDTSELLNNFEMLCSNLDLETWMSQDTNTSANSVSSSSVSLDNTSHISIDESSYLQQNSLQQWVDTPQQHPSIPPHVGLKT*