AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1233640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233640 MtrunA17_Chr8g0342981 94.545 825 41 4 1 823 1 823 0.0 1597
Msa1233640 MtrunA17_Chr8g0342971 67.643 819 218 13 38 823 66 870 0.0 1102
Msa1233640 MtrunA17_Chr8g0344211 66.626 821 229 9 34 823 62 868 0.0 1090
Msa1233640 MtrunA17_Chr8g0343011 66.052 813 236 10 37 823 67 865 0.0 1085
Msa1233640 MtrunA17_Chr8g0342891 64.555 821 246 10 34 823 55 861 0.0 1070
Msa1233640 MtrunA17_Chr8g0342951 66.382 821 231 11 34 823 62 868 0.0 1063
Msa1233640 MtrunA17_Chr8g0342921 63.980 819 248 13 37 823 66 869 0.0 1043
Msa1233640 MtrunA17_Chr8g0342931 66.095 758 219 7 93 823 4 750 0.0 1010
Msa1233640 MtrunA17_Chr8g0342901 63.033 798 265 10 32 823 55 828 0.0 1009
Msa1233640 MtrunA17_Chr8g0342991 60.757 846 270 13 1 823 1 807 0.0 991
Msa1233640 MtrunA17_Chr8g0343001 58.343 857 273 14 1 823 1 807 0.0 952
Msa1233640 MtrunA17_Chr8g0342881 58.100 821 299 10 34 823 50 856 0.0 951
Msa1233640 MtrunA17_Chr2g0329911 58.852 819 290 12 37 823 58 861 0.0 944
Msa1233640 MtrunA17_Chr2g0329901 56.479 818 308 12 37 823 63 863 0.0 896
Msa1233640 MtrunA17_Chr5g0406871 55.976 820 311 14 37 823 65 867 0.0 886
Msa1233640 MtrunA17_Chr8g0343031 55.556 819 315 14 37 823 64 865 0.0 878
Msa1233640 MtrunA17_Chr8g0343021 54.579 819 323 13 37 823 63 864 0.0 867
Msa1233640 MtrunA17_Chr3g0120071 54.212 819 332 12 34 823 54 858 0.0 864
Msa1233640 MtrunA17_Chr7g0272791 51.217 863 358 18 10 823 19 867 0.0 826
Msa1233640 MtrunA17_Chr1g0191921 53.455 825 331 15 37 823 49 858 0.0 823
Msa1233640 MtrunA17_Chr1g0205611 51.023 831 350 16 37 823 39 856 0.0 806
Msa1233640 MtrunA17_Chr8g0344201 44.037 763 381 11 93 822 177 926 0.0 635
Msa1233640 MtrunA17_Chr8g0344241 72.864 398 104 2 427 823 67 461 0.0 595
Msa1233640 MtrunA17_Chr3g0118651 42.583 782 405 15 72 823 136 903 0.0 591
Msa1233640 MtrunA17_Chr8g0377101 40.361 830 429 17 37 823 110 916 0.0 575
Msa1233640 MtrunA17_Chr3g0118641 42.366 786 401 15 72 823 135 902 0.0 573
Msa1233640 MtrunA17_Chr8g0338451 38.526 841 442 19 18 809 42 856 0.0 564
Msa1233640 MtrunA17_Chr4g0047281 40.346 751 402 14 93 822 169 894 0.0 557
Msa1233640 MtrunA17_Chr4g0033171 42.382 722 359 13 139 823 24 725 0.0 545
Msa1233640 MtrunA17_Chr3g0118621 42.670 764 390 15 94 823 116 865 4.50e-178 534
Msa1233640 MtrunA17_Chr6g0471951 38.819 474 243 7 310 778 43 474 6.11e-109 342
Msa1233640 MtrunA17_Chr7g0218231 61.207 116 44 1 479 593 17 132 3.18e-41 147
Msa1233640 MtrunA17_Chr6g0468081 56.180 89 38 1 506 593 1 89 1.41e-25 101
Msa1233640 MtrunA17_Chr4g0047271 41.758 91 53 0 732 822 1 91 1.42e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233640 AT1G55020.1 51.879 825 343 17 37 823 51 859 0.0 805
Msa1233640 AT3G22400.1 48.968 872 376 19 9 823 27 886 0.0 801
Msa1233640 AT1G17420.1 44.823 763 376 12 92 823 171 919 0.0 637
Msa1233640 AT1G72520.1 43.194 764 388 11 92 823 177 926 0.0 627
Msa1233640 AT3G45140.1 40.898 846 426 23 17 823 86 896 0.0 574
Msa1233640 AT3G45140.2 42.523 769 380 19 94 823 9 754 0.0 570
Msa1233640 AT1G67560.1 39.854 823 442 17 37 823 112 917 0.0 554

Find 191 sgRNAs with CRISPR-Local

Find 479 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCACTGATTTAGCATTAAT+TGG 0.113920 8_2:+10496611 None:intergenic
CTTCATGCAGCTGTTAATTT+TGG 0.155837 8_2:-10494740 Msa1233640:CDS
TCATCTTTAACATCTTTATT+TGG 0.164702 8_2:+10495792 None:intergenic
ACGTAATATTGAATTGAAAT+TGG 0.167485 8_2:+10497543 None:intergenic
ATTTCGTGATCGTGCATTTA+TGG 0.174964 8_2:+10495485 None:intergenic
GACTTGGGTCGTCCAGTTCT+TGG 0.187573 8_2:-10497073 Msa1233640:CDS
CATCTTTAACATCTTTATTT+GGG 0.193179 8_2:+10495793 None:intergenic
CTATCTAACTTGCTCTTTCT+TGG 0.212968 8_2:+10496207 None:intergenic
GCATTTACTTTCCTCAAATA+TGG 0.213554 8_2:+10495954 None:intergenic
CCCTTCCGACTCTCAGTCTT+TGG 0.218642 8_2:+10496803 None:intergenic
AGTGGGAGAGCGAACATATT+TGG 0.226436 8_2:-10497591 Msa1233640:CDS
GAAAGGATCCCATGAGTTTA+AGG 0.229876 8_2:-10494654 Msa1233640:CDS
AAGATGACGAACCTTTAATT+TGG 0.260253 8_2:-10495776 Msa1233640:CDS
ATGAGGAACTCAGAGCATTT+TGG 0.263372 8_2:-10494877 Msa1233640:CDS
GGACTACATGAAGACATATT+TGG 0.266844 8_2:-10494621 Msa1233640:CDS
GAATGCTAAGTGGGTTAAAA+TGG 0.267598 8_2:-10494819 Msa1233640:CDS
ACCCTTGATGTTCCAAATCT+TGG 0.280311 8_2:-10497428 Msa1233640:CDS
TTTCTCTGGCATGAATCTTA+TGG 0.281030 8_2:+10494673 None:intergenic
TGTCCAAGGTATTCCTCATT+AGG 0.283725 8_2:+10494530 None:intergenic
ACTTGGGTCGTCCAGTTCTT+GGG 0.289714 8_2:-10497072 Msa1233640:CDS
GTTTGGCTCCAAGTGTTCTT+TGG 0.296808 8_2:+10496152 None:intergenic
CCTGCAATCACTTGTGGTAT+TGG 0.318367 8_2:+10496572 None:intergenic
TTTGCAAGGAGCCAAATTAA+AGG 0.323385 8_2:+10495765 None:intergenic
CATCCTAATGGTGATAGTTT+TGG 0.332322 8_2:-10495840 Msa1233640:CDS
CGTAATATTGAATTGAAATT+GGG 0.336297 8_2:+10497544 None:intergenic
TTGTAGGCTTCTACTGGCTC+TGG 0.340356 8_2:+10494476 None:intergenic
AAGTTGATGGTTCCAAGATT+TGG 0.344231 8_2:+10497416 None:intergenic
CCACTGATTTAGCATTAATT+GGG 0.359882 8_2:+10496612 None:intergenic
CAGCTGTTGTTTACAAGGAT+TGG 0.361308 8_2:-10495395 Msa1233640:CDS
ACTGTGACCCCATCCATGTT+TGG 0.364475 8_2:+10496135 None:intergenic
ACTTCAAGGGTTTCAACCTT+TGG 0.366918 8_2:+10494587 None:intergenic
GTAGCCTTACCTTTCTTACT+TGG 0.369109 8_2:+10496986 None:intergenic
CTGTTGATGGACTAGAGATA+TGG 0.369958 8_2:-10494970 Msa1233640:CDS
AATTCAATATTACGTTTGAA+TGG 0.370219 8_2:-10497535 Msa1233640:CDS
CTACGATGTCTACAATGATT+TGG 0.375479 8_2:-10497116 Msa1233640:CDS
GAAGAGTTGAAGACTTTAAG+AGG 0.376977 8_2:-10497181 Msa1233640:CDS
AAAGAACTGAAGGTGATCTT+TGG 0.382740 8_2:-10494508 Msa1233640:CDS
GAGCTGGTGTTTCACTTAGA+AGG 0.387861 8_2:+10497224 None:intergenic
CAACAAGGTCACAAAGCTTA+AGG 0.388273 8_2:-10502060 Msa1233640:CDS
CATTCGTCATAGCAACAAAT+AGG 0.394550 8_2:-10495569 Msa1233640:CDS
ACTCTTGCACTACCCTCATA+TGG 0.396428 8_2:-10494775 Msa1233640:CDS
AACTCATGGGATCCTTTCTC+TGG 0.406308 8_2:+10494659 None:intergenic
CCCAAGTCAGCCTCTTTGTC+TGG 0.409139 8_2:+10497088 None:intergenic
TGAGTTGCAGATAAAGTTGA+TGG 0.410883 8_2:+10497403 None:intergenic
GTGTTCTTTGGTTATTGTGC+TGG 0.414888 8_2:+10496164 None:intergenic
AAAGAAATTGATTGAAATTG+AGG 0.415217 8_2:-10494444 Msa1233640:CDS
GGAACTAAAAGTTTATGAAT+TGG 0.415574 8_2:+10495528 None:intergenic
CTTTATCCTTCCAGTGGACC+AGG 0.416744 8_2:-10494347 Msa1233640:CDS
AGCATCAAAGATGACTTCAT+TGG 0.418451 8_2:-10502102 None:intergenic
AGCTGTTGTTTACAAGGATT+GGG 0.419463 8_2:-10495394 Msa1233640:CDS
GTGGGAGAGCGAACATATTT+GGG 0.423494 8_2:-10497590 Msa1233640:CDS
GGCAAGTAAACATTACTAAC+AGG 0.430747 8_2:+10495816 None:intergenic
TCTTGTCTATAGTAGACTAA+TGG 0.431200 8_2:+10497202 None:intergenic
TCTAGTCCATCAACAGCATA+TGG 0.431259 8_2:+10494977 None:intergenic
GAAGGATAAAGAAGAGTGTA+TGG 0.437895 8_2:+10494359 None:intergenic
TGCTGCTGATCCTTCCATCC+CGG 0.439402 8_2:-10502006 Msa1233640:CDS
AGGAAATGGAAAAGGAAAAG+TGG 0.439449 8_2:-10497609 Msa1233640:CDS
GAACTAAAAGTTTATGAATT+GGG 0.442063 8_2:+10495529 None:intergenic
AATGTCAGCTGTTGTTTACA+AGG 0.448150 8_2:-10495400 Msa1233640:CDS
GCCAGACAAAGAGGCTGACT+TGG 0.449309 8_2:-10497089 Msa1233640:CDS
TACGATGTCTACAATGATTT+GGG 0.450405 8_2:-10497115 Msa1233640:CDS
ATTCAATATTACGTTTGAAT+GGG 0.452062 8_2:-10497534 Msa1233640:CDS
GGACCAAAACTATCACCATT+AGG 0.454709 8_2:+10495837 None:intergenic
CCAATACCACAAGTGATTGC+AGG 0.459078 8_2:-10496572 Msa1233640:intron
AACAAGGTCACAAAGCTTAA+GGG 0.460236 8_2:-10502059 Msa1233640:CDS
AAGTTAGATAGTAAACTCTA+TGG 0.460764 8_2:-10496195 Msa1233640:CDS
GGATGGAACTTTGAATCCAT+TGG 0.462431 8_2:-10495883 Msa1233640:CDS
GATTATCCATATGCTGTTGA+TGG 0.465219 8_2:-10494983 Msa1233640:CDS
GATCTTACCCTTCGAGGGTA+AGG 0.465611 8_2:+10497019 None:intergenic
GTGTGAAGTAATTCATCTCT+TGG 0.466557 8_2:+10496767 None:intergenic
TTGAAGACTTTAAGAGGAGA+TGG 0.467418 8_2:-10497175 Msa1233640:CDS
GCTGCTGATCCTTCCATCCC+GGG 0.468082 8_2:-10502005 Msa1233640:CDS
CTCACCAATGGCTGACAAGT+TGG 0.472627 8_2:+10495709 None:intergenic
CACCTTCAGTTCTTTGTCCA+AGG 0.475536 8_2:+10494516 None:intergenic
CACAATAACCAAAGAACACT+TGG 0.476943 8_2:-10496160 Msa1233640:CDS
ATGCAATCTATCCATATTTG+AGG 0.477015 8_2:-10495965 Msa1233640:CDS
CTAAGTTTGCCACATCCTAA+TGG 0.478321 8_2:-10495852 Msa1233640:CDS
GTGCTGAAGCAATCCATATG+AGG 0.478585 8_2:+10494762 None:intergenic
CTTGGGTCGTCCAGTTCTTG+GGG 0.478606 8_2:-10497071 Msa1233640:CDS
CATAGTATTCATAACTTCAA+GGG 0.479502 8_2:+10494574 None:intergenic
ATCCCTCTACCGGTCAATCC+TGG 0.481528 8_2:+10494329 None:intergenic
ACCGGTCAATCCTGGTCCAC+TGG 0.482600 8_2:+10494337 None:intergenic
TGAATGGGACACTGAAAAGA+TGG 0.486422 8_2:-10497519 Msa1233640:CDS
TTTGCAAGACAGATGATTGC+TGG 0.490818 8_2:-10496391 Msa1233640:CDS
CAGAAGACGCAGACCATGTA+GGG 0.495190 8_2:+10495012 None:intergenic
ACTTGATCAATTAGTGCAGC+TGG 0.495729 8_2:+10494201 None:intergenic
TAGCGAGCTCCTTAAACTCA+TGG 0.496735 8_2:+10494645 None:intergenic
AACGGGTGAGCGCAAAGAAT+GGG 0.497372 8_2:-10497152 Msa1233640:CDS
AAGATGGGAGCTCCATCCCC+AGG 0.498433 8_2:-10497503 Msa1233640:CDS
GACGATGATTCTTCCCTACA+TGG 0.498532 8_2:-10495025 Msa1233640:CDS
GGACCAGGATTGACCGGTAG+AGG 0.499249 8_2:-10494332 Msa1233640:CDS
TGGTCTGCGTCTTCTGATAG+AGG 0.500498 8_2:-10495005 Msa1233640:CDS
CTACCAGATCTTACCCTTCG+AGG 0.502272 8_2:+10497013 None:intergenic
CACTTGGAGCCAAACATGGA+TGG 0.506365 8_2:-10496144 Msa1233640:CDS
TTTAATTTGGCTCCTTGCAA+AGG 0.507483 8_2:-10495763 Msa1233640:CDS
TGAAGTTATGAATACTATGC+TGG 0.513367 8_2:-10494570 Msa1233640:CDS
ATCTTTAACATCTTTATTTG+GGG 0.514164 8_2:+10495794 None:intergenic
GCATAGTATTCATAACTTCA+AGG 0.518741 8_2:+10494573 None:intergenic
GAACGGGTGAGCGCAAAGAA+TGG 0.519285 8_2:-10497153 Msa1233640:CDS
GGTAGAGAACCAAGTAAGAA+AGG 0.522835 8_2:-10496995 Msa1233640:intron
TCAACTTTATCTGCAACTCA+TGG 0.523897 8_2:-10497400 Msa1233640:CDS
AAGAATGGTTCTAGCAGCAT+AGG 0.523930 8_2:+10495917 None:intergenic
ATAAGATTCATGCCAGAGAA+AGG 0.523973 8_2:-10494671 Msa1233640:CDS
TTGGAAAGAACTTGTAGAAG+TGG 0.524808 8_2:-10494858 Msa1233640:CDS
TTCCATCCCGGGTCGTTCTG+TGG 0.526330 8_2:-10501994 Msa1233640:CDS
CAGATTGATTAGTGATTCCA+CGG 0.526943 8_2:-10501967 Msa1233640:CDS
TGGAAAGAACTTGTAGAAGT+GGG 0.530595 8_2:-10494857 Msa1233640:CDS
TCCAGTGGACCAGGATTGAC+CGG 0.531569 8_2:-10494338 Msa1233640:CDS
GACTTTAAGAGGAGATGGAA+CGG 0.533638 8_2:-10497170 Msa1233640:CDS
TTTGGGAAGTCTTATTACCT+CGG 0.534922 8_2:-10497573 Msa1233640:CDS
TTCCAAGATTTGGAACATCA+AGG 0.534980 8_2:+10497426 None:intergenic
TTGAAATTGGGTTTCATCCG+AGG 0.535165 8_2:+10497556 None:intergenic
CCCAATTAATGCTAAATCAG+TGG 0.536006 8_2:-10496612 Msa1233640:CDS
TACCCTCGAAGGGTAAGATC+TGG 0.536332 8_2:-10497016 Msa1233640:CDS
ACTTTAAGAGGAGATGGAAC+GGG 0.538118 8_2:-10497169 Msa1233640:CDS
ATTAGTGATTCCACGGCTGA+TGG 0.539092 8_2:-10501960 Msa1233640:intron
GGAAATGGAAAAGGAAAAGT+GGG 0.542323 8_2:-10497608 Msa1233640:CDS
CTATTTGTTGCTATGACGAA+TGG 0.543162 8_2:+10495570 None:intergenic
GATTGGGTATTCGCTGAAGA+AGG 0.543264 8_2:-10495378 Msa1233640:CDS
TGTTGATGGACTAGAGATAT+GGG 0.545247 8_2:-10494969 Msa1233640:CDS
ACTTGGAGCCAAACATGGAT+GGG 0.545456 8_2:-10496143 Msa1233640:CDS
CAACAGCATATGCCTTTGCA+AGG 0.546438 8_2:+10495751 None:intergenic
ATTTGTGTAGGAAATGGAAA+AGG 0.547881 8_2:-10497617 Msa1233640:intron
GTCACCAACTTGTCAGCCAT+TGG 0.552121 8_2:-10495713 Msa1233640:intron
TATGGGCTGCTATTAAGTCA+TGG 0.554200 8_2:-10494952 Msa1233640:CDS
ATTAATTGGGGAAAGTTCGT+TGG 0.554684 8_2:+10496625 None:intergenic
TTGCTTATTATCTAGAGGAG+TGG 0.555634 8_2:-10495053 Msa1233640:intron
AGCCACAGAACGACCCGGGA+TGG 0.555840 8_2:+10501992 None:intergenic
CTATAGTAGACTAATGGAGC+TGG 0.556484 8_2:+10497208 None:intergenic
ATGTGGCAAACTTAGCTCAA+TGG 0.559945 8_2:+10495860 None:intergenic
CTGAAAGCCACAGAACGACC+CGG 0.560077 8_2:+10501987 None:intergenic
AGCGAGCTCCTTAAACTCAT+GGG 0.561213 8_2:+10494646 None:intergenic
AGAACACTTGGAGCCAAACA+TGG 0.561811 8_2:-10496148 Msa1233640:CDS
TTGAGGAAGAGTTCATTCAA+AGG 0.562917 8_2:-10494427 Msa1233640:CDS
GATCCTAATGAGGAATACCT+TGG 0.563947 8_2:-10494533 Msa1233640:CDS
ATGGGCTGCTATTAAGTCAT+GGG 0.567374 8_2:-10494951 Msa1233640:CDS
GGATGGGGTCACAGTAAAAG+AGG 0.568212 8_2:-10496127 Msa1233640:intron
GTGAGCGCAAAGAATGGGAT+AGG 0.571677 8_2:-10497147 Msa1233640:CDS
TCCAAGATTTGGAACATCAA+GGG 0.571677 8_2:+10497427 None:intergenic
TAAAGATGTTAAAGATGATG+AGG 0.573052 8_2:-10494894 Msa1233640:CDS
AGAGTGTATGGAAACTTCAC+AGG 0.573626 8_2:+10494371 None:intergenic
GAGTGACAACACATCTTGAA+AGG 0.575030 8_2:+10496709 None:intergenic
GAAACTTCACAGGCCCATAC+CGG 0.575716 8_2:+10494381 None:intergenic
TACTTAGTATATCAGTATCA+CGG 0.578520 8_2:+10496669 None:intergenic
GTCATCGTGCCACGATAGTG+TGG 0.579536 8_2:+10495507 None:intergenic
CACTGATTTAGCATTAATTG+GGG 0.580014 8_2:+10496613 None:intergenic
ACTCTTCTTTATCCTTCCAG+TGG 0.580368 8_2:-10494353 Msa1233640:CDS
ATCCATGCATGATCCTAATG+AGG 0.583398 8_2:-10494543 Msa1233640:CDS
TTCCTCATTAGGATCATGCA+TGG 0.584765 8_2:+10494541 None:intergenic
CCAAAGACTGAGAGTCGGAA+GGG 0.589023 8_2:-10496803 Msa1233640:CDS
TACCAGATCTTACCCTTCGA+GGG 0.590224 8_2:+10497014 None:intergenic
AGAGGATTATCATGCATGGA+TGG 0.591887 8_2:-10496425 Msa1233640:CDS
TCTTTAACATCTTTATTTGG+GGG 0.594301 8_2:+10495795 None:intergenic
GTCAATCCTGGTCCACTGGA+AGG 0.594966 8_2:+10494341 None:intergenic
TACCTTGGACAAAGAACTGA+AGG 0.595384 8_2:-10494518 Msa1233640:CDS
TGAGTTTAAGGAGCTCGCTA+AGG 0.596693 8_2:-10494642 Msa1233640:CDS
CCAGACAAAGAGGCTGACTT+GGG 0.599209 8_2:-10497088 Msa1233640:CDS
GAATGGGACACTGAAAAGAT+GGG 0.599538 8_2:-10497518 Msa1233640:CDS
GACCAGGATTGACCGGTAGA+GGG 0.605995 8_2:-10494331 Msa1233640:CDS
TATATACCTGCAATCACTTG+TGG 0.606191 8_2:+10496566 None:intergenic
GAAGTTATTACCATCAGCCG+TGG 0.608159 8_2:+10501950 None:intergenic
TTGGGTCGTCCAGTTCTTGG+GGG 0.609093 8_2:-10497070 Msa1233640:CDS
TCCAAAGACTGAGAGTCGGA+AGG 0.609862 8_2:-10496804 Msa1233640:CDS
TTGGACAATATCAGTACGGA+GGG 0.615349 8_2:-10494721 Msa1233640:CDS
GAGTAGAGGATTATCATGCA+TGG 0.615496 8_2:-10496429 Msa1233640:intron
AAACTATCACCATTAGGATG+TGG 0.615628 8_2:+10495843 None:intergenic
TCAGAAGACGCAGACCATGT+AGG 0.618358 8_2:+10495011 None:intergenic
AGATGGGAGCTCCATCCCCA+GGG 0.620003 8_2:-10497502 Msa1233640:CDS
ACTATTGGGAATCCCTCTAC+CGG 0.620513 8_2:+10494319 None:intergenic
TGCTGAAGCAATCCATATGA+GGG 0.621259 8_2:+10494763 None:intergenic
TCATGCATGGATGGCTGATG+AGG 0.623591 8_2:-10496416 Msa1233640:CDS
AAATATCTTGATCAATGCAG+AGG 0.628743 8_2:-10495466 Msa1233640:CDS
GAACTTGTAGAAGTGGGTCA+TGG 0.630532 8_2:-10494851 Msa1233640:CDS
TGAAAGCCACAGAACGACCC+GGG 0.630611 8_2:+10501988 None:intergenic
TTTGGAGACAATCACACCAA+AGG 0.631480 8_2:-10494603 Msa1233640:CDS
CATCAAGGGTCAAACTCACA+AGG 0.634650 8_2:+10497441 None:intergenic
AAACTTAGCTCAATGGCCAA+TGG 0.637050 8_2:+10495867 None:intergenic
AATATCTTGATCAATGCAGA+GGG 0.638662 8_2:-10495465 Msa1233640:CDS
TTTGGGTGAGCCAGACAAAG+AGG 0.639737 8_2:-10497098 Msa1233640:CDS
GCTTTGAATAAAAGATGAGA+AGG 0.643318 8_2:-10494255 Msa1233640:three_prime_UTR
AACAAACAACACAACAACCA+TGG 0.650735 8_2:+10494278 None:intergenic
CTTGGAGCCAAACATGGATG+GGG 0.651235 8_2:-10496142 Msa1233640:CDS
GCGCATCTTCTTTACCAACA+AGG 0.651998 8_2:-10497348 Msa1233640:intron
CAGATCCAAAGACTGAGAGT+CGG 0.656130 8_2:-10496808 Msa1233640:CDS
TGACTTGAAGAATGCTAAGT+GGG 0.656610 8_2:-10494828 Msa1233640:CDS
TTTGGACAATATCAGTACGG+AGG 0.658574 8_2:-10494722 Msa1233640:CDS
GTGACTTGAAGAATGCTAAG+TGG 0.679804 8_2:-10494829 Msa1233640:CDS
AGTGTTAGCTAAGAACAACA+AGG 0.729550 8_2:-10502075 Msa1233640:CDS
GATGGGAGCTCCATCCCCAG+GGG 0.731834 8_2:-10497501 Msa1233640:CDS
GTAAATTCAACAAAACATCG+AGG 0.749212 8_2:-10496649 Msa1233640:CDS
AATATGGATAGATTGCATCG+TGG 0.790344 8_2:+10495970 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATTAGTCATTTTTTT+AGG - chr8_2:10494715-10494734 Msa1233640:CDS 10.0%
!! TAATAAGAATAGTTTAAAAA+AGG + chr8_2:10494945-10494964 None:intergenic 10.0%
!! TTTAAACTATTCTTATTAAA+AGG - chr8_2:10494947-10494966 Msa1233640:CDS 10.0%
!! TTAAACTATTCTTATTAAAA+GGG - chr8_2:10494948-10494967 Msa1233640:CDS 10.0%
!! AAAAAATTTAGTTATTTGAT+TGG - chr8_2:10495053-10495072 Msa1233640:intron 10.0%
!!! AATTGAGTATAATTTAATTT+AGG - chr8_2:10495456-10495475 Msa1233640:CDS 10.0%
!! AGTACATATTTAATTATTAA+GGG + chr8_2:10495899-10495918 None:intergenic 10.0%
!! TAGTACATATTTAATTATTA+AGG + chr8_2:10495900-10495919 None:intergenic 10.0%
!!! ATGAATTTATTTTTCTTAAA+TGG + chr8_2:10495982-10496001 None:intergenic 10.0%
!! CTTTATAATTTAAATATCAA+TGG - chr8_2:10496004-10496023 Msa1233640:CDS 10.0%
!!! TTGTTTCATATTTTATAATA+GGG - chr8_2:10496137-10496156 Msa1233640:CDS 10.0%
!!! AAATAAAATAAAAAAGTACT+GGG + chr8_2:10496245-10496264 None:intergenic 10.0%
!!! TAAATAAAATAAAAAAGTAC+TGG + chr8_2:10496246-10496265 None:intergenic 10.0%
!!! CTCTTTTATTAATTATATTA+AGG - chr8_2:10496501-10496520 Msa1233640:intron 10.0%
!! TTAATAAAAAAATGAGAAAA+AGG - chr8_2:10498168-10498187 Msa1233640:intron 10.0%
!!! CTATAAAAAAAATCAATTTT+AGG + chr8_2:10498339-10498358 None:intergenic 10.0%
!! AATAATCTTATAATTATGGA+CGG + chr8_2:10494348-10494367 None:intergenic 15.0%
!!! AAAAATGACTAATTTTAAGT+GGG + chr8_2:10494713-10494732 None:intergenic 15.0%
!!! AAAAAATGACTAATTTTAAG+TGG + chr8_2:10494714-10494733 None:intergenic 15.0%
!!! TATCTTTAAATGAATAGTTT+TGG - chr8_2:10495233-10495252 Msa1233640:intron 15.0%
!!! ATATTCACAAATTTTAGATA+GGG + chr8_2:10495499-10495518 None:intergenic 15.0%
!! AAAAGTTAATCTTAATCATA+AGG - chr8_2:10495703-10495722 Msa1233640:intron 15.0%
!!! GTGTAGATTTTATTTTTAAA+GGG + chr8_2:10495840-10495859 None:intergenic 15.0%
!!! AGTGTAGATTTTATTTTTAA+AGG + chr8_2:10495841-10495860 None:intergenic 15.0%
!!! AATTTATTTTTCTTAAATGG+TGG + chr8_2:10495979-10495998 None:intergenic 15.0%
!! TTACTAAATACAGTAAAATA+TGG + chr8_2:10496095-10496114 None:intergenic 15.0%
!!! GTTGTTTCATATTTTATAAT+AGG - chr8_2:10496136-10496155 Msa1233640:CDS 15.0%
!!! AATAAAATAAAAAAGTACTG+GGG + chr8_2:10496244-10496263 None:intergenic 15.0%
!!! AATGTATATTTTAACATAAG+AGG - chr8_2:10496429-10496448 Msa1233640:intron 15.0%
!!! ATGTATATTTTAACATAAGA+GGG - chr8_2:10496430-10496449 Msa1233640:intron 15.0%
!! GTTACAAAAAAATAAGATAA+AGG + chr8_2:10497389-10497408 None:intergenic 15.0%
!!! CTTATTTTTTTGTAACAATT+TGG - chr8_2:10497393-10497412 Msa1233640:CDS 15.0%
!!! AAAATAAATCTCTTTTCTAT+AGG - chr8_2:10497930-10497949 Msa1233640:intron 15.0%
!!! AAATAAATCTCTTTTCTATA+GGG - chr8_2:10497931-10497950 Msa1233640:intron 15.0%
!! TAACATTAATTCATGATATT+TGG - chr8_2:10497993-10498012 Msa1233640:intron 15.0%
!! GTTACAAATAAATAAGATAA+AGG - chr8_2:10498258-10498277 Msa1233640:intron 15.0%
!! AATCAAAATGTAATATACAT+TGG + chr8_2:10498399-10498418 None:intergenic 15.0%
!!! AATGTATATTACATTTTGAT+TGG - chr8_2:10498398-10498417 Msa1233640:intron 15.0%
!! ATTTAAATTAGTAGTATATC+TGG - chr8_2:10498580-10498599 Msa1233640:intron 15.0%
!!! TAAATTTTATTTTGTCTAAC+AGG - chr8_2:10500218-10500237 Msa1233640:intron 15.0%
!! TTATTATATCAAAATGATCT+AGG + chr8_2:10500567-10500586 None:intergenic 15.0%
!! TTTGTTTGAAAAATATTGTA+TGG - chr8_2:10500821-10500840 Msa1233640:intron 15.0%
!!! ATTAATGTCTTTTTAACAAA+TGG + chr8_2:10500952-10500971 None:intergenic 15.0%
!!! TATGTAATTAGTTTGTTATT+TGG + chr8_2:10501032-10501051 None:intergenic 15.0%
!!! AATACCCATGTTTTTTTTAA+AGG - chr8_2:10494507-10494526 Msa1233640:CDS 20.0%
!!! TTGACCTTTAAAAAAAACAT+GGG + chr8_2:10494514-10494533 None:intergenic 20.0%
!!! TTTGACCTTTAAAAAAAACA+TGG + chr8_2:10494515-10494534 None:intergenic 20.0%
!!! TTTAGACTTTTGAAACTTAA+AGG + chr8_2:10494582-10494601 None:intergenic 20.0%
!! AATTTAGTTATTTGATTGGT+AGG - chr8_2:10495057-10495076 Msa1233640:intron 20.0%
!!! TGGATTTTAACAGAATAAAA+AGG - chr8_2:10495114-10495133 Msa1233640:intron 20.0%
!!! GATATTCACAAATTTTAGAT+AGG + chr8_2:10495500-10495519 None:intergenic 20.0%
!!! TATGCATATTACATTTTGAT+TGG + chr8_2:10495636-10495655 None:intergenic 20.0%
!!! TGTATATTTTAACATAAGAG+TGG + chr8_2:10496431-10496450 None:intergenic 20.0%
!!! AGATTTTATTTTTAAAGGGA+GGG + chr8_2:10495836-10495855 None:intergenic 20.0%
!!! TAGATTTTATTTTTAAAGGG+AGG + chr8_2:10495837-10495856 None:intergenic 20.0%
!! TATTTAATTATTAAGGGAGA+GGG + chr8_2:10495893-10495912 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+AGG + chr8_2:10495894-10495913 None:intergenic 20.0%
!!! ATAAAATAAAAAAGTACTGG+GGG + chr8_2:10496243-10496262 None:intergenic 20.0%
!!! GAAATGTTTTCTAATATGTT+TGG - chr8_2:10496390-10496409 Msa1233640:CDS 20.0%
!!! TTTCTAATATGTTTGGAATA+AGG - chr8_2:10496397-10496416 Msa1233640:CDS 20.0%
!!! TTCTAATATGTTTGGAATAA+GGG - chr8_2:10496398-10496417 Msa1233640:CDS 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr8_2:10496431-10496450 Msa1233640:intron 20.0%
!! TGTAATTCAAAAATCTTTGA+GGG - chr8_2:10496461-10496480 Msa1233640:intron 20.0%
!! CAAAATTGAACAATCAAAAT+GGG + chr8_2:10497209-10497228 None:intergenic 20.0%
!! ACAAAATTGAACAATCAAAA+TGG + chr8_2:10497208-10497227 None:intergenic 20.0%
!!! CTTTTTGATTTGATTTTTCT+TGG + chr8_2:10497072-10497091 None:intergenic 20.0%
!! ACAAAATTGAACAATCAAAA+TGG - chr8_2:10497208-10497227 Msa1233640:CDS 20.0%
!! CAAAATTGAACAATCAAAAT+GGG - chr8_2:10497209-10497228 Msa1233640:CDS 20.0%
!! GAATGTAATCGATAAATTTA+AGG - chr8_2:10497247-10497266 Msa1233640:intron 20.0%
!! TGAACACCTAAATATAATTA+AGG - chr8_2:10497345-10497364 Msa1233640:intron 20.0%
!! ATCTTGCCTTAATTATATTT+AGG + chr8_2:10497354-10497373 None:intergenic 20.0%
!! TAACATTAATTCACGATATT+TGG + chr8_2:10497649-10497668 None:intergenic 20.0%
!!! ATCTTTATTTTTTTCCGTTT+AGG + chr8_2:10498225-10498244 None:intergenic 20.0%
!! ACGGAAAAAAATAAAGATAA+AGG - chr8_2:10498227-10498246 Msa1233640:intron 20.0%
!! CTTATTTATTTGTAACACTT+TGG + chr8_2:10498254-10498273 None:intergenic 20.0%
!! TATAGACAAGATTACATTAT+AGG + chr8_2:10498285-10498304 None:intergenic 20.0%
!! TGGTAATAACTATAATCATT+GGG + chr8_2:10498480-10498499 None:intergenic 20.0%
!! TTACTACTATCAACTTATTA+CGG + chr8_2:10498538-10498557 None:intergenic 20.0%
!! CGTAATATTGAATTGAAATT+GGG + chr8_2:10498704-10498723 None:intergenic 20.0%
!! ACGTAATATTGAATTGAAAT+TGG + chr8_2:10498705-10498724 None:intergenic 20.0%
!! AATTCAATATTACGTTTGAA+TGG - chr8_2:10498710-10498729 Msa1233640:intron 20.0%
!! ATTCAATATTACGTTTGAAT+GGG - chr8_2:10498711-10498730 Msa1233640:intron 20.0%
!! TTAAATATATTGCGATAACT+TGG + chr8_2:10499739-10499758 None:intergenic 20.0%
!! ATGTACAAAAGAAATAAAGA+AGG - chr8_2:10499931-10499950 Msa1233640:intron 20.0%
!! TATAATGCATACATAGTAAT+TGG - chr8_2:10499975-10499994 Msa1233640:intron 20.0%
!! AATAAATATAGAAAGCAATG+AGG + chr8_2:10500008-10500027 None:intergenic 20.0%
!!! ATCTTTAACATCTTTATTTG+GGG + chr8_2:10500454-10500473 None:intergenic 20.0%
!!! CATCTTTAACATCTTTATTT+GGG + chr8_2:10500455-10500474 None:intergenic 20.0%
!! TCATCTTTAACATCTTTATT+TGG + chr8_2:10500456-10500475 None:intergenic 20.0%
!! GAACTAAAAGTTTATGAATT+GGG + chr8_2:10500719-10500738 None:intergenic 20.0%
!!! TTTAAGTTATTGATTCACTT+GGG + chr8_2:10501000-10501019 None:intergenic 20.0%
!!! TTTTAAGTTATTGATTCACT+TGG + chr8_2:10501001-10501020 None:intergenic 20.0%
!! AAACACGCAAAAAAAAAATA+CGG + chr8_2:10501158-10501177 None:intergenic 20.0%
!! AAAGAAATTGATTGAAATTG+AGG - chr8_2:10501801-10501820 Msa1233640:intron 20.0%
! TCTATACACAAATGACAATT+TGG - chr8_2:10494434-10494453 Msa1233640:CDS 25.0%
! GAAACGATTCAAAAACTAAA+AGG + chr8_2:10494611-10494630 None:intergenic 25.0%
!!! ATTTTTTTAGGCATGACAAA+TGG - chr8_2:10494727-10494746 Msa1233640:CDS 25.0%
! AACTATTCTTATTAAAAGGG+AGG - chr8_2:10494951-10494970 Msa1233640:CDS 25.0%
! ACTATTCTTATTAAAAGGGA+GGG - chr8_2:10494952-10494971 Msa1233640:CDS 25.0%
!! TAAACATTTTTATCTGATCC+AGG + chr8_2:10495140-10495159 None:intergenic 25.0%
! GTGAATATCTTTGTTGAAAT+AGG - chr8_2:10495511-10495530 Msa1233640:CDS 25.0%
!!! TATTTTAACATAAGAGTGGA+GGG + chr8_2:10495806-10495825 None:intergenic 25.0%
!!! ATATTTTAACATAAGAGTGG+AGG + chr8_2:10495807-10495826 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+GGG + chr8_2:10495869-10495888 None:intergenic 25.0%
! TTGTAATTCAAGCATCTTAT+AGG + chr8_2:10495870-10495889 None:intergenic 25.0%
!! TCTAATATGTTTGGAATAAG+GGG - chr8_2:10496399-10496418 Msa1233640:CDS 25.0%
! GTGTAATTCAAAAATCTTTG+AGG - chr8_2:10496460-10496479 Msa1233640:intron 25.0%
! GTAATTCAAAAATCTTTGAG+GGG - chr8_2:10496462-10496481 Msa1233640:intron 25.0%
! TACATCAAATTTCTTTCATC+TGG - chr8_2:10496575-10496594 Msa1233640:CDS 25.0%
! GAATGTAAGTGATGAATTTA+AGG + chr8_2:10496605-10496624 None:intergenic 25.0%
! GAAACAAGAATTGATCAATA+GGG + chr8_2:10496705-10496724 None:intergenic 25.0%
! AGAAACAAGAATTGATCAAT+AGG + chr8_2:10496706-10496725 None:intergenic 25.0%
! AAGTCATCTGTTATACTTTA+AGG + chr8_2:10497019-10497038 None:intergenic 25.0%
! ATTAATTTACACTACAAGAC+TGG + chr8_2:10496536-10496555 None:intergenic 25.0%
! AATTAAGGCAAGATTACATT+AGG - chr8_2:10497360-10497379 Msa1233640:CDS 25.0%
! ATTAAGGCAAGATTACATTA+GGG - chr8_2:10497361-10497380 Msa1233640:CDS 25.0%
!!! TATCTTTATTTTTCCCGTTT+AGG - chr8_2:10497421-10497440 Msa1233640:CDS 25.0%
! TGTGTTTAAAAGAAGATTTG+AGG + chr8_2:10497964-10497983 None:intergenic 25.0%
! TTGCAACATTTGTGAAATTA+AGG + chr8_2:10497711-10497730 None:intergenic 25.0%
! TTAATTTCACAAATGTTGCA+AGG - chr8_2:10497710-10497729 Msa1233640:intron 25.0%
! TACAAAAGTTAAGATTGTTC+TGG - chr8_2:10497774-10497793 Msa1233640:intron 25.0%
!!! TTTTGAGGTTATTTTTATGC+CGG - chr8_2:10497831-10497850 Msa1233640:intron 25.0%
! TGTGTTTAAAAGAAGATTTG+AGG - chr8_2:10497964-10497983 Msa1233640:intron 25.0%
! GTGGTAATAACTATAATCAT+TGG + chr8_2:10498481-10498500 None:intergenic 25.0%
! TACTACTATCAACTTATTAC+GGG + chr8_2:10498537-10498556 None:intergenic 25.0%
!! GATATTTTTCATTACCTTGT+TGG + chr8_2:10498914-10498933 None:intergenic 25.0%
! TCATAAGTAGAGTAAACATT+TGG + chr8_2:10499363-10499382 None:intergenic 25.0%
! TACTTAGTATATCAGTATCA+CGG + chr8_2:10499579-10499598 None:intergenic 25.0%
! AATCATATAAAGAAAGCTCA+TGG - chr8_2:10499769-10499788 Msa1233640:intron 25.0%
!! AATTTTGTTACTATGAGTAG+AGG - chr8_2:10499802-10499821 Msa1233640:intron 25.0%
! TTGCTTTCTATATTTATTGC+AGG - chr8_2:10500010-10500029 Msa1233640:intron 25.0%
! AAGTTAGATAGTAAACTCTA+TGG - chr8_2:10500050-10500069 Msa1233640:intron 25.0%
!! AACCATTCTTTTTGTTAAAG+AGG - chr8_2:10500341-10500360 Msa1233640:intron 25.0%
! ATCCTCTTTAACAAAAAGAA+TGG + chr8_2:10500346-10500365 None:intergenic 25.0%
!! ATTCTTTTTGTTAAAGAGGA+TGG - chr8_2:10500345-10500364 Msa1233640:intron 25.0%
!! TCTTTAACATCTTTATTTGG+GGG + chr8_2:10500453-10500472 None:intergenic 25.0%
! GGAACTAAAAGTTTATGAAT+TGG + chr8_2:10500720-10500739 None:intergenic 25.0%
! TACCTACTGATCTAAAAAAT+AGG - chr8_2:10500892-10500911 Msa1233640:intron 25.0%
!!! TACCTATTTTTTAGATCAGT+AGG + chr8_2:10500897-10500916 None:intergenic 25.0%
! TATTGCAAAACATTACATCT+TGG - chr8_2:10500920-10500939 Msa1233640:intron 25.0%
!!! TAGTTTGTTATTTGGTAGTT+AGG + chr8_2:10501024-10501043 None:intergenic 25.0%
! TAAAGATGTTAAAGATGATG+AGG - chr8_2:10501351-10501370 Msa1233640:intron 25.0%
!! AATTTTGGACAATATCAGTA+CGG - chr8_2:10501520-10501539 Msa1233640:intron 25.0%
!!! ATGAATCTTATGGTTTTAGT+TGG + chr8_2:10501565-10501584 None:intergenic 25.0%
! CATAGTATTCATAACTTCAA+GGG + chr8_2:10501674-10501693 None:intergenic 25.0%
!! TTTCTTTGCAAACTTTTTGT+AGG + chr8_2:10501788-10501807 None:intergenic 25.0%
ATCTTATAATTATGGACGGA+TGG + chr8_2:10494344-10494363 None:intergenic 30.0%
TGGGTATTAAAGAAAGTTGT+TGG + chr8_2:10494495-10494514 None:intergenic 30.0%
TAAAGGTCAAATGCATCTAA+AGG - chr8_2:10494524-10494543 Msa1233640:CDS 30.0%
!!! GTTTTTAGTTTTTCCCAAAG+TGG - chr8_2:10494555-10494574 Msa1233640:CDS 30.0%
CTTATTGTAGATAGCATAGT+TGG - chr8_2:10494639-10494658 Msa1233640:CDS 30.0%
!! ACTAATTTTAAGTGGGTGTT+AGG + chr8_2:10494706-10494725 None:intergenic 30.0%
! TTTCAAACAAGTCCTTTTAG+AGG + chr8_2:10494797-10494816 None:intergenic 30.0%
GAAACGATTCAAAAACGAAA+AGG - chr8_2:10494813-10494832 Msa1233640:CDS 30.0%
! AAAAACGAAAAGGACTTGTT+TGG - chr8_2:10494823-10494842 Msa1233640:CDS 30.0%
! AAAACGAAAAGGACTTGTTT+GGG - chr8_2:10494824-10494843 Msa1233640:CDS 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr8_2:10494842-10494861 Msa1233640:CDS 30.0%
! TGAAACTTAAAGGACTTGTT+TGG - chr8_2:10494852-10494871 Msa1233640:CDS 30.0%
! GAAACTTAAAGGACTTGTTT+GGG - chr8_2:10494853-10494872 Msa1233640:CDS 30.0%
TGAAACTTAAATGACCACTT+TGG - chr8_2:10494881-10494900 Msa1233640:CDS 30.0%
GAAACTTAAATGACCACTTT+GGG - chr8_2:10494882-10494901 Msa1233640:CDS 30.0%
AAAAGGTGAAATGCATCTAA+AGG + chr8_2:10494928-10494947 None:intergenic 30.0%
TTTAACAGAATAAAAAGGCC+TGG - chr8_2:10495119-10495138 Msa1233640:intron 30.0%
! TTTTAGATAGGGAGTTTCTA+CGG + chr8_2:10495488-10495507 None:intergenic 30.0%
! TGTTTTCTTCTCAAGAAAGT+AGG - chr8_2:10495540-10495559 Msa1233640:CDS 30.0%
AGAAAGTAGGAACAATGATT+AGG - chr8_2:10495553-10495572 Msa1233640:CDS 30.0%
!! ATTTTAACATAAGAGTGGAG+GGG + chr8_2:10495805-10495824 None:intergenic 30.0%
TGTAATTCAAGCTTCTCTTA+AGG - chr8_2:10496358-10496377 Msa1233640:intron 30.0%
GTAATTCAAGCTTCTCTTAA+GGG - chr8_2:10496359-10496378 Msa1233640:intron 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG - chr8_2:10496434-10496453 Msa1233640:intron 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG - chr8_2:10496435-10496454 Msa1233640:intron 30.0%
CAATCAAAATGGGAAGATAA+TGG + chr8_2:10496732-10496751 None:intergenic 30.0%
!! GTTCTTTTGTTTGGACTTAA+AGG + chr8_2:10496906-10496925 None:intergenic 30.0%
!! TTTGATTTTTCTTGGTTGTG+AGG + chr8_2:10497064-10497083 None:intergenic 30.0%
CTCACGAAAATTGAAAAATG+CGG - chr8_2:10497176-10497195 Msa1233640:CDS 30.0%
TTAAGGCAAGATTACATTAG+GGG - chr8_2:10497362-10497381 Msa1233640:CDS 30.0%
!! TGTGCTTTTAAGAGAGATAA+AGG + chr8_2:10497448-10497467 None:intergenic 30.0%
GAACATCTTCATCATATTTC+TGG + chr8_2:10497555-10497574 None:intergenic 30.0%
AGAAGATGATGAAGATTCAA+AGG + chr8_2:10497595-10497614 None:intergenic 30.0%
!!! TTTGAGGTTATTTTTATGCC+GGG - chr8_2:10497832-10497851 Msa1233640:intron 30.0%
TCTAACTCAATATTCAAACC+CGG + chr8_2:10497853-10497872 None:intergenic 30.0%
GAAGATTCAAAGAAAGAAGA+TGG - chr8_2:10498059-10498078 Msa1233640:intron 30.0%
GTACATCTTCATCATATTTC+TGG - chr8_2:10498089-10498108 Msa1233640:intron 30.0%
TGAGAGATAAAAGACCTAAA+CGG - chr8_2:10498208-10498227 Msa1233640:intron 30.0%
! TTTGATTGGTTGATATCATG+AGG - chr8_2:10498412-10498431 Msa1233640:intron 30.0%
! TTGATTGGTTGATATCATGA+GGG - chr8_2:10498413-10498432 Msa1233640:intron 30.0%
CCTATATTTAGAGATGAAAG+TGG + chr8_2:10498500-10498519 None:intergenic 30.0%
CCACTTTCATCTCTAAATAT+AGG - chr8_2:10498497-10498516 Msa1233640:intron 30.0%
ACTACTATCAACTTATTACG+GGG + chr8_2:10498536-10498555 None:intergenic 30.0%
!! CTACTTTCTGAAATTTGTGT+AGG - chr8_2:10498616-10498635 Msa1233640:intron 30.0%
! TCTGAAATTTGTGTAGGAAA+TGG - chr8_2:10498622-10498641 Msa1233640:intron 30.0%
ATTTGTGTAGGAAATGGAAA+AGG - chr8_2:10498628-10498647 Msa1233640:intron 30.0%
TCTTGTCTATAGTAGACTAA+TGG + chr8_2:10499046-10499065 None:intergenic 30.0%
GTAAATTCAACAAAACATCG+AGG - chr8_2:10499596-10499615 Msa1233640:intron 30.0%
!! CACTGATTTAGCATTAATTG+GGG + chr8_2:10499635-10499654 None:intergenic 30.0%
!! CCACTGATTTAGCATTAATT+GGG + chr8_2:10499636-10499655 None:intergenic 30.0%
GTGATTGCAGGTATATATAT+TGG - chr8_2:10499685-10499704 Msa1233640:intron 30.0%
TTGGATATATTGCGATAACT+TGG + chr8_2:10499720-10499739 None:intergenic 30.0%
!! ATTTACCAGAAGTTTTTCGA+TGG + chr8_2:10499894-10499913 None:intergenic 30.0%
TTCAATCAATTGAACTACAC+AGG - chr8_2:10500194-10500213 Msa1233640:intron 30.0%
ATGCAATCTATCCATATTTG+AGG - chr8_2:10500280-10500299 Msa1233640:intron 30.0%
GCATTTACTTTCCTCAAATA+TGG + chr8_2:10500294-10500313 None:intergenic 30.0%
AAGATGACGAACCTTTAATT+TGG - chr8_2:10500469-10500488 Msa1233640:intron 30.0%
TATACATTTACTTGTGTCAC+AGG - chr8_2:10500628-10500647 Msa1233640:intron 30.0%
AAATATCTTGATCAATGCAG+AGG - chr8_2:10500779-10500798 Msa1233640:intron 30.0%
AATATCTTGATCAATGCAGA+GGG - chr8_2:10500780-10500799 Msa1233640:intron 30.0%
GCAAAAAAAAAATACGGAAG+GGG + chr8_2:10501152-10501171 None:intergenic 30.0%
CGCAAAAAAAAAATACGGAA+GGG + chr8_2:10501153-10501172 None:intergenic 30.0%
ACGCAAAAAAAAAATACGGA+AGG + chr8_2:10501154-10501173 None:intergenic 30.0%
CTTTCTTGCTTATTATCTAG+AGG - chr8_2:10501187-10501206 Msa1233640:intron 30.0%
!!! ATCTTATGGTTTTAGTTGGT+CGG + chr8_2:10501561-10501580 None:intergenic 30.0%
GCATAGTATTCATAACTTCA+AGG + chr8_2:10501675-10501694 None:intergenic 30.0%
TGAAGTTATGAATACTATGC+TGG - chr8_2:10501675-10501694 Msa1233640:intron 30.0%
ATGATGAGTCATTGAAAAAC+CGG - chr8_2:10501845-10501864 Msa1233640:intron 30.0%
! TTTTAGATGGAGACACTATT+GGG + chr8_2:10501943-10501962 None:intergenic 30.0%
! TTTTTAGATGGAGACACTAT+TGG + chr8_2:10501944-10501963 None:intergenic 30.0%
! GCTTTGAATAAAAGATGAGA+AGG - chr8_2:10501990-10502009 Msa1233640:CDS 30.0%
AGTGTTAGCTAAGAACAACA+AGG - chr8_2:10494170-10494189 Msa1233640:three_prime_UTR 35.0%
AACAAGGTCACAAAGCTTAA+GGG - chr8_2:10494186-10494205 Msa1233640:three_prime_UTR 35.0%
CAGATTGATTAGTGATTCCA+CGG - chr8_2:10494278-10494297 Msa1233640:three_prime_UTR 35.0%
GAAACTTAAAGGACCACTTT+GGG + chr8_2:10494571-10494590 None:intergenic 35.0%
TGAAACTTAAAGGACCACTT+TGG + chr8_2:10494572-10494591 None:intergenic 35.0%
!! TTTTTAGGCATGACAAATGG+TGG - chr8_2:10494730-10494749 Msa1233640:CDS 35.0%
!! GTTTTTCGTTTTTCCCAAAG+TGG + chr8_2:10494898-10494917 None:intergenic 35.0%
ATTCTTATTAAAAGGGAGGG+AGG - chr8_2:10494955-10494974 Msa1233640:CDS 35.0%
TTCTTATTAAAAGGGAGGGA+GGG - chr8_2:10494956-10494975 Msa1233640:CDS 35.0%
CTGTTAAAATCCAGTTCTCA+GGG + chr8_2:10495107-10495126 None:intergenic 35.0%
TCTGTTAAAATCCAGTTCTC+AGG + chr8_2:10495108-10495127 None:intergenic 35.0%
ATTACCCCTTAAACAAGAGA+GGG + chr8_2:10495593-10495612 None:intergenic 35.0%
AATTACCCCTTAAACAAGAG+AGG + chr8_2:10495594-10495613 None:intergenic 35.0%
! GATTGGTTGATATCATGAGA+GGG + chr8_2:10495619-10495638 None:intergenic 35.0%
! TGATTGGTTGATATCATGAG+AGG + chr8_2:10498414-10498433 None:intergenic 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG - chr8_2:10496436-10496455 Msa1233640:intron 35.0%
!! ATGTTTTTGTTCTCACGTTC+GGG + chr8_2:10496652-10496671 None:intergenic 35.0%
!! GATGTTTTTGTTCTCACGTT+CGG + chr8_2:10496653-10496672 None:intergenic 35.0%
! AATTTGAAACTGCAGCAGTT+TGG + chr8_2:10496770-10496789 None:intergenic 35.0%
! GCGTGTTAGCAGATTTTATT+AGG + chr8_2:10496860-10496879 None:intergenic 35.0%
TTGTTTGGACTTAAAGGCTT+TGG + chr8_2:10496900-10496919 None:intergenic 35.0%
! GAGGCTTTTGTTCTTTTGTT+TGG + chr8_2:10496915-10496934 None:intergenic 35.0%
!!! GAGTTTGCTAGCATCTTTTT+CGG + chr8_2:10496962-10496981 None:intergenic 35.0%
! ATACTTTAAGGATTGCTAGC+AGG + chr8_2:10497007-10497026 None:intergenic 35.0%
!! TGACATGGTTCTGGAAATAA+CGG - chr8_2:10497112-10497131 Msa1233640:CDS 35.0%
ACGGTAATTCTCACGATATT+TGG - chr8_2:10497131-10497150 Msa1233640:CDS 35.0%
AGAGAGATAAAGGACCTAAA+CGG + chr8_2:10497438-10497457 None:intergenic 35.0%
ATTTCACAAATGTTGCAAGG+AGG - chr8_2:10497713-10497732 Msa1233640:intron 35.0%
! TGATTGGTTGATATCATGAG+GGG - chr8_2:10498414-10498433 Msa1233640:intron 35.0%
AAATACCCTCTAAACAAGAG+AGG - chr8_2:10498439-10498458 Msa1233640:intron 35.0%
AATACCCTCTAAACAAGAGA+GGG - chr8_2:10498440-10498459 Msa1233640:intron 35.0%
! ATTACCCTCTCTTGTTTAGA+GGG + chr8_2:10498447-10498466 None:intergenic 35.0%
AGGAAATGGAAAAGGAAAAG+TGG - chr8_2:10498636-10498655 Msa1233640:intron 35.0%
GGAAATGGAAAAGGAAAAGT+GGG - chr8_2:10498637-10498656 Msa1233640:intron 35.0%
!! TTTGGGAAGTCTTATTACCT+CGG - chr8_2:10498672-10498691 Msa1233640:intron 35.0%
! TCCAAGATTTGGAACATCAA+GGG + chr8_2:10498821-10498840 None:intergenic 35.0%
! TTCCAAGATTTGGAACATCA+AGG + chr8_2:10498822-10498841 None:intergenic 35.0%
!! AAGTTGATGGTTCCAAGATT+TGG + chr8_2:10498832-10498851 None:intergenic 35.0%
TGAGTTGCAGATAAAGTTGA+TGG + chr8_2:10498845-10498864 None:intergenic 35.0%
TCAACTTTATCTGCAACTCA+TGG - chr8_2:10498845-10498864 Msa1233640:intron 35.0%
GAAGAGTTGAAGACTTTAAG+AGG - chr8_2:10499064-10499083 Msa1233640:intron 35.0%
! TTGAAGACTTTAAGAGGAGA+TGG - chr8_2:10499070-10499089 Msa1233640:intron 35.0%
CTACGATGTCTACAATGATT+TGG - chr8_2:10499129-10499148 Msa1233640:intron 35.0%
AGAACCAAGTAAGAAAGGTA+AGG - chr8_2:10499255-10499274 Msa1233640:intron 35.0%
!!! CGACTATTATTTTGAGACAC+AGG + chr8_2:10499316-10499335 None:intergenic 35.0%
GTGTGAAGTAATTCATCTCT+TGG + chr8_2:10499481-10499500 None:intergenic 35.0%
ATTAATTGGGGAAAGTTCGT+TGG + chr8_2:10499623-10499642 None:intergenic 35.0%
CCCAATTAATGCTAAATCAG+TGG - chr8_2:10499633-10499652 Msa1233640:intron 35.0%
!! GCCACTGATTTAGCATTAAT+TGG + chr8_2:10499637-10499656 None:intergenic 35.0%
TATATACCTGCAATCACTTG+TGG + chr8_2:10499682-10499701 None:intergenic 35.0%
!! AGAAGTTTTTCGATGGCATT+CGG + chr8_2:10499887-10499906 None:intergenic 35.0%
!! CTATCTAACTTGCTCTTTCT+TGG + chr8_2:10500041-10500060 None:intergenic 35.0%
CACAATAACCAAAGAACACT+TGG - chr8_2:10500085-10500104 Msa1233640:intron 35.0%
AATATGGATAGATTGCATCG+TGG + chr8_2:10500278-10500297 None:intergenic 35.0%
AAACTATCACCATTAGGATG+TGG + chr8_2:10500405-10500424 None:intergenic 35.0%
! CATCCTAATGGTGATAGTTT+TGG - chr8_2:10500405-10500424 Msa1233640:intron 35.0%
GGCAAGTAAACATTACTAAC+AGG + chr8_2:10500432-10500451 None:intergenic 35.0%
TTTGCAAGGAGCCAAATTAA+AGG + chr8_2:10500483-10500502 None:intergenic 35.0%
!! TTTAATTTGGCTCCTTGCAA+AGG - chr8_2:10500482-10500501 Msa1233640:intron 35.0%
ATCTAGGAAATTCTCACCAA+TGG + chr8_2:10500551-10500570 None:intergenic 35.0%
! CTATTTGTTGCTATGACGAA+TGG + chr8_2:10500678-10500697 None:intergenic 35.0%
CATTCGTCATAGCAACAAAT+AGG - chr8_2:10500676-10500695 Msa1233640:intron 35.0%
ATTTCGTGATCGTGCATTTA+TGG + chr8_2:10500763-10500782 None:intergenic 35.0%
! AATGTCAGCTGTTGTTTACA+AGG - chr8_2:10500845-10500864 Msa1233640:intron 35.0%
! AGCTGTTGTTTACAAGGATT+GGG - chr8_2:10500851-10500870 Msa1233640:intron 35.0%
AAAAAAAAATACGGAAGGGG+TGG + chr8_2:10501149-10501168 None:intergenic 35.0%
TTGCTTATTATCTAGAGGAG+TGG - chr8_2:10501192-10501211 Msa1233640:intron 35.0%
GATTATCCATATGCTGTTGA+TGG - chr8_2:10501262-10501281 Msa1233640:intron 35.0%
!! TGTTGATGGACTAGAGATAT+GGG - chr8_2:10501276-10501295 Msa1233640:intron 35.0%
TTGGAAAGAACTTGTAGAAG+TGG - chr8_2:10501387-10501406 Msa1233640:intron 35.0%
TGGAAAGAACTTGTAGAAGT+GGG - chr8_2:10501388-10501407 Msa1233640:intron 35.0%
TGACTTGAAGAATGCTAAGT+GGG - chr8_2:10501417-10501436 Msa1233640:intron 35.0%
!! GAATGCTAAGTGGGTTAAAA+TGG - chr8_2:10501426-10501445 Msa1233640:intron 35.0%
! CTTCATGCAGCTGTTAATTT+TGG - chr8_2:10501505-10501524 Msa1233640:intron 35.0%
TTTCTCTGGCATGAATCTTA+TGG + chr8_2:10501575-10501594 None:intergenic 35.0%
ATAAGATTCATGCCAGAGAA+AGG - chr8_2:10501574-10501593 Msa1233640:intron 35.0%
GGACTACATGAAGACATATT+TGG - chr8_2:10501624-10501643 Msa1233640:intron 35.0%
AAAGAACTGAAGGTGATCTT+TGG - chr8_2:10501737-10501756 Msa1233640:intron 35.0%
! AACTTTTTGTAGGCTTCTAC+TGG + chr8_2:10501778-10501797 None:intergenic 35.0%
TTGAGGAAGAGTTCATTCAA+AGG - chr8_2:10501818-10501837 Msa1233640:intron 35.0%
AGTCATTGAAAAACCGGTAT+GGG - chr8_2:10501851-10501870 Msa1233640:intron 35.0%
! GAAGGATAAAGAAGAGTGTA+TGG + chr8_2:10501889-10501908 None:intergenic 35.0%
TCTCCATCTAAAAAAAGCCA+TGG - chr8_2:10501950-10501969 Msa1233640:intron 35.0%
!!! CAACCATGGCTTTTTTTAGA+TGG + chr8_2:10501956-10501975 None:intergenic 35.0%
AACAAACAACACAACAACCA+TGG + chr8_2:10501970-10501989 None:intergenic 35.0%
CAACAAGGTCACAAAGCTTA+AGG - chr8_2:10494185-10494204 Msa1233640:three_prime_UTR 40.0%
TGCTTCCTTGAACTCATCTT+TGG - chr8_2:10494666-10494685 Msa1233640:CDS 40.0%
TGGTACCAAAGATGAGTTCA+AGG + chr8_2:10494674-10494693 None:intergenic 40.0%
CATCACCATCATCCTCTAAA+AGG - chr8_2:10494782-10494801 Msa1233640:CDS 40.0%
!! CAAGTCCTTTTAGAGGATGA+TGG + chr8_2:10494790-10494809 None:intergenic 40.0%
ATCCAGTTCTCAGGGAAAAT+GGG + chr8_2:10495099-10495118 None:intergenic 40.0%
AATCCAGTTCTCAGGGAAAA+TGG + chr8_2:10495100-10495119 None:intergenic 40.0%
! ACGTTACCCTCTCTTGTTTA+AGG - chr8_2:10495584-10495603 Msa1233640:CDS 40.0%
! CGTTACCCTCTCTTGTTTAA+GGG - chr8_2:10495585-10495604 Msa1233640:CDS 40.0%
! GTTACCCTCTCTTGTTTAAG+GGG - chr8_2:10495586-10495605 Msa1233640:CDS 40.0%
ATTCAAGCTTCTCTTAAGGG+AGG - chr8_2:10496362-10496381 Msa1233640:CDS 40.0%
TTCAAGCTTCTCTTAAGGGA+GGG - chr8_2:10496363-10496382 Msa1233640:CDS 40.0%
!! TGTTTTTGTTCTCACGTTCG+GGG + chr8_2:10496651-10496670 None:intergenic 40.0%
! ACTTAAAGGCTTTGGCTGAT+AGG + chr8_2:10496892-10496911 None:intergenic 40.0%
GCTGAAATGGTTATGTCATG+AGG + chr8_2:10496934-10496953 None:intergenic 40.0%
!! TTTTTCGGTTGCTGCTGAAA+TGG + chr8_2:10496947-10496966 None:intergenic 40.0%
AAACTCCCAAAACATCACAG+CGG - chr8_2:10496976-10496995 Msa1233640:intron 40.0%
! GTTATTTCCAGAACCATGTC+AGG + chr8_2:10497113-10497132 None:intergenic 40.0%
GAGAGATAAAGGACCTAAAC+GGG + chr8_2:10497437-10497456 None:intergenic 40.0%
AAATGTTGCAAGGAGGATAG+TGG - chr8_2:10497720-10497739 Msa1233640:intron 40.0%
! CAAAGCTGCTCTCAATTTTG+AGG - chr8_2:10497816-10497835 Msa1233640:intron 40.0%
! GATTGGTTGATATCATGAGG+GGG - chr8_2:10498415-10498434 Msa1233640:intron 40.0%
! GATTACCCTCTCTTGTTTAG+AGG + chr8_2:10498448-10498467 None:intergenic 40.0%
TTGAAATTGGGTTTCATCCG+AGG + chr8_2:10498692-10498711 None:intergenic 40.0%
TGAATGGGACACTGAAAAGA+TGG - chr8_2:10498726-10498745 Msa1233640:intron 40.0%
GAATGGGACACTGAAAAGAT+GGG - chr8_2:10498727-10498746 Msa1233640:intron 40.0%
TCTCGATAAAAAAAGCCCCT+GGG + chr8_2:10498762-10498781 None:intergenic 40.0%
TTCTCGATAAAAAAAGCCCC+TGG + chr8_2:10498763-10498782 None:intergenic 40.0%
ACCCTTGATGTTCCAAATCT+TGG - chr8_2:10498817-10498836 Msa1233640:intron 40.0%
CTATAGTAGACTAATGGAGC+TGG + chr8_2:10499040-10499059 None:intergenic 40.0%
! GACTTTAAGAGGAGATGGAA+CGG - chr8_2:10499075-10499094 Msa1233640:intron 40.0%
! ACTTTAAGAGGAGATGGAAC+GGG - chr8_2:10499076-10499095 Msa1233640:intron 40.0%
GGTAGAGAACCAAGTAAGAA+AGG - chr8_2:10499250-10499269 Msa1233640:intron 40.0%
! GTAGCCTTACCTTTCTTACT+TGG + chr8_2:10499262-10499281 None:intergenic 40.0%
CACAGGCAGTACAAAAATTG+AGG + chr8_2:10499299-10499318 None:intergenic 40.0%
GAGTGACAACACATCTTGAA+AGG + chr8_2:10499539-10499558 None:intergenic 40.0%
GAGTAGAGGATTATCATGCA+TGG - chr8_2:10499816-10499835 Msa1233640:intron 40.0%
AGAGGATTATCATGCATGGA+TGG - chr8_2:10499820-10499839 Msa1233640:intron 40.0%
TTTGCAAGACAGATGATTGC+TGG - chr8_2:10499854-10499873 Msa1233640:intron 40.0%
GAATGCCATCGAAAAACTTC+TGG - chr8_2:10499886-10499905 Msa1233640:intron 40.0%
GTGTTCTTTGGTTATTGTGC+TGG + chr8_2:10500084-10500103 None:intergenic 40.0%
!! AAGAATGGTTCTAGCAGCAT+AGG + chr8_2:10500331-10500350 None:intergenic 40.0%
GGATGGAACTTTGAATCCAT+TGG - chr8_2:10500362-10500381 Msa1233640:intron 40.0%
AAACTTAGCTCAATGGCCAA+TGG + chr8_2:10500381-10500400 None:intergenic 40.0%
ATGTGGCAAACTTAGCTCAA+TGG + chr8_2:10500388-10500407 None:intergenic 40.0%
CTAAGTTTGCCACATCCTAA+TGG - chr8_2:10500393-10500412 Msa1233640:intron 40.0%
GGACCAAAACTATCACCATT+AGG + chr8_2:10500411-10500430 None:intergenic 40.0%
!!! CTTTTAGTTCCACACTATCG+TGG - chr8_2:10500729-10500748 Msa1233640:intron 40.0%
! CAGCTGTTGTTTACAAGGAT+TGG - chr8_2:10500850-10500869 Msa1233640:intron 40.0%
TCTAGTCCATCAACAGCATA+TGG + chr8_2:10501271-10501290 None:intergenic 40.0%
!! CTGTTGATGGACTAGAGATA+TGG - chr8_2:10501275-10501294 Msa1233640:intron 40.0%
! TATGGGCTGCTATTAAGTCA+TGG - chr8_2:10501293-10501312 Msa1233640:intron 40.0%
! ATGGGCTGCTATTAAGTCAT+GGG - chr8_2:10501294-10501313 Msa1233640:intron 40.0%
!! ATGAGGAACTCAGAGCATTT+TGG - chr8_2:10501368-10501387 Msa1233640:intron 40.0%
GTGACTTGAAGAATGCTAAG+TGG - chr8_2:10501416-10501435 Msa1233640:intron 40.0%
TGCTGAAGCAATCCATATGA+GGG + chr8_2:10501485-10501504 None:intergenic 40.0%
TTTGGACAATATCAGTACGG+AGG - chr8_2:10501523-10501542 Msa1233640:intron 40.0%
TTGGACAATATCAGTACGGA+GGG - chr8_2:10501524-10501543 Msa1233640:intron 40.0%
!!! TGGTTTTAGTTGGTCGGTTA+AGG + chr8_2:10501555-10501574 None:intergenic 40.0%
GAAAGGATCCCATGAGTTTA+AGG - chr8_2:10501591-10501610 Msa1233640:intron 40.0%
TTTGGAGACAATCACACCAA+AGG - chr8_2:10501642-10501661 Msa1233640:intron 40.0%
ACTTCAAGGGTTTCAACCTT+TGG + chr8_2:10501661-10501680 None:intergenic 40.0%
ATCCATGCATGATCCTAATG+AGG - chr8_2:10501702-10501721 Msa1233640:intron 40.0%
TTCCTCATTAGGATCATGCA+TGG + chr8_2:10501707-10501726 None:intergenic 40.0%
GATCCTAATGAGGAATACCT+TGG - chr8_2:10501712-10501731 Msa1233640:intron 40.0%
! TGTCCAAGGTATTCCTCATT+AGG + chr8_2:10501718-10501737 None:intergenic 40.0%
TACCTTGGACAAAGAACTGA+AGG - chr8_2:10501727-10501746 Msa1233640:intron 40.0%
GAGTCATTGAAAAACCGGTA+TGG - chr8_2:10501850-10501869 Msa1233640:intron 40.0%
AGAGTGTATGGAAACTTCAC+AGG + chr8_2:10501877-10501896 None:intergenic 40.0%
ACTCTTCTTTATCCTTCCAG+TGG - chr8_2:10501892-10501911 Msa1233640:intron 40.0%
ACTTGATCAATTAGTGCAGC+TGG + chr8_2:10502047-10502066 None:intergenic 40.0%
ATTAGTGATTCCACGGCTGA+TGG - chr8_2:10494285-10494304 Msa1233640:three_prime_UTR 45.0%
GAAGTTATTACCATCAGCCG+TGG + chr8_2:10494298-10494317 None:intergenic 45.0%
TGGGTGTTAGGAGTCAGATT+TGG + chr8_2:10494694-10494713 None:intergenic 45.0%
TCAAGCTTCTCTTAAGGGAG+GGG - chr8_2:10496364-10496383 Msa1233640:CDS 45.0%
! TGTTTGGAATAAGGGGAGAG+AGG - chr8_2:10496406-10496425 Msa1233640:CDS 45.0%
AAAAGTCACGATACCTGACG+CGG + chr8_2:10496821-10496840 None:intergenic 45.0%
! TGTTGCCGCTGTGATGTTTT+GGG + chr8_2:10496984-10497003 None:intergenic 45.0%
TCAACTCACCATACCTGACA+TGG - chr8_2:10497097-10497116 Msa1233640:CDS 45.0%
TTCCAGAACCATGTCAGGTA+TGG + chr8_2:10497108-10497127 None:intergenic 45.0%
AGTGGGAGAGCGAACATATT+TGG - chr8_2:10498654-10498673 Msa1233640:intron 45.0%
GTGGGAGAGCGAACATATTT+GGG - chr8_2:10498655-10498674 Msa1233640:intron 45.0%
ATAAAAAAAGCCCCTGGGGA+TGG + chr8_2:10498757-10498776 None:intergenic 45.0%
CTCGATAAAAAAAGCCCCTG+GGG + chr8_2:10498761-10498780 None:intergenic 45.0%
CATCAAGGGTCAAACTCACA+AGG + chr8_2:10498807-10498826 None:intergenic 45.0%
GCGCATCTTCTTTACCAACA+AGG - chr8_2:10498897-10498916 Msa1233640:intron 45.0%
GAGCTGGTGTTTCACTTAGA+AGG + chr8_2:10499024-10499043 None:intergenic 45.0%
! ACACTTTTCCTTACCCTCGA+AGG - chr8_2:10499218-10499237 Msa1233640:intron 45.0%
! CACTTTTCCTTACCCTCGAA+GGG - chr8_2:10499219-10499238 Msa1233640:intron 45.0%
TACCAGATCTTACCCTTCGA+GGG + chr8_2:10499234-10499253 None:intergenic 45.0%
CAGATCCAAAGACTGAGAGT+CGG - chr8_2:10499437-10499456 Msa1233640:intron 45.0%
CCTGCAATCACTTGTGGTAT+TGG + chr8_2:10499676-10499695 None:intergenic 45.0%
CCAATACCACAAGTGATTGC+AGG - chr8_2:10499673-10499692 Msa1233640:intron 45.0%
! GTTTGGCTCCAAGTGTTCTT+TGG + chr8_2:10500096-10500115 None:intergenic 45.0%
AGAACACTTGGAGCCAAACA+TGG - chr8_2:10500097-10500116 Msa1233640:intron 45.0%
ACTTGGAGCCAAACATGGAT+GGG - chr8_2:10500102-10500121 Msa1233640:intron 45.0%
CAACAGCATATGCCTTTGCA+AGG + chr8_2:10500497-10500516 None:intergenic 45.0%
GATTGGGTATTCGCTGAAGA+AGG - chr8_2:10500867-10500886 Msa1233640:intron 45.0%
GACGATGATTCTTCCCTACA+TGG - chr8_2:10501220-10501239 Msa1233640:intron 45.0%
GAACTTGTAGAAGTGGGTCA+TGG - chr8_2:10501394-10501413 Msa1233640:intron 45.0%
ACTCTTGCACTACCCTCATA+TGG - chr8_2:10501470-10501489 Msa1233640:intron 45.0%
GTGCTGAAGCAATCCATATG+AGG + chr8_2:10501486-10501505 None:intergenic 45.0%
AACTCATGGGATCCTTTCTC+TGG + chr8_2:10501589-10501608 None:intergenic 45.0%
AGCGAGCTCCTTAAACTCAT+GGG + chr8_2:10501602-10501621 None:intergenic 45.0%
TAGCGAGCTCCTTAAACTCA+TGG + chr8_2:10501603-10501622 None:intergenic 45.0%
TGAGTTTAAGGAGCTCGCTA+AGG - chr8_2:10501603-10501622 Msa1233640:intron 45.0%
CACCTTCAGTTCTTTGTCCA+AGG + chr8_2:10501732-10501751 None:intergenic 45.0%
ACTATTGGGAATCCCTCTAC+CGG + chr8_2:10501929-10501948 None:intergenic 45.0%
!! TATAAATAATCTTATAATTA+TGG + chr8_2:10494352-10494371 None:intergenic 5.0%
!! TATAAGATTATTTATAAAAA+CGG - chr8_2:10494356-10494375 Msa1233640:CDS 5.0%
!!! TAAAAGTATTTTTTTTTTTT+TGG + chr8_2:10495757-10495776 None:intergenic 5.0%
!!! ATTATTGTAATTTTATTTTT+TGG - chr8_2:10496114-10496133 Msa1233640:intron 5.0%
!! ATTATTAAAAAAATATATTG+AGG - chr8_2:10496297-10496316 Msa1233640:intron 5.0%
!! TAGAAAATAATAATAATATA+CGG - chr8_2:10497869-10497888 Msa1233640:intron 5.0%
TTCTCAGGGAAAATGGGCAC+TGG + chr8_2:10495093-10495112 None:intergenic 50.0%
! TGCCCATTTTCCCTGAGAAC+TGG - chr8_2:10495094-10495113 Msa1233640:intron 50.0%
!! GTTGTTTCTAGAACCGCGTC+AGG - chr8_2:10496805-10496824 Msa1233640:CDS 50.0%
! AAAGGCTTTGGCTGATAGGC+AGG + chr8_2:10496888-10496907 None:intergenic 50.0%
! GTGTTGCCGCTGTGATGTTT+TGG + chr8_2:10496985-10497004 None:intergenic 50.0%
CACCATACCTGACATGGTTC+TGG - chr8_2:10497103-10497122 Msa1233640:CDS 50.0%
! TGTTGCAAGGAGGATAGTGG+AGG - chr8_2:10497723-10497742 Msa1233640:intron 50.0%
AGTGGAGGCTTAGTCACTGA+CGG - chr8_2:10497738-10497757 Msa1233640:intron 50.0%
AGGCTTAGTCACTGACGGAA+GGG - chr8_2:10497743-10497762 Msa1233640:intron 50.0%
TAGTCACTGACGGAAGGGTT+AGG - chr8_2:10497748-10497767 Msa1233640:intron 50.0%
AACGGGTGAGCGCAAAGAAT+GGG - chr8_2:10499093-10499112 Msa1233640:intron 50.0%
GTGAGCGCAAAGAATGGGAT+AGG - chr8_2:10499098-10499117 Msa1233640:intron 50.0%
! CCAGACAAAGAGGCTGACTT+GGG - chr8_2:10499157-10499176 Msa1233640:intron 50.0%
ACTTGGGTCGTCCAGTTCTT+GGG - chr8_2:10499173-10499192 Msa1233640:intron 50.0%
TCTTGGGGGATCAAGCACTT+TGG - chr8_2:10499189-10499208 Msa1233640:intron 50.0%
GATCTTACCCTTCGAGGGTA+AGG + chr8_2:10499229-10499248 None:intergenic 50.0%
TACCCTCGAAGGGTAAGATC+TGG - chr8_2:10499229-10499248 Msa1233640:intron 50.0%
CTACCAGATCTTACCCTTCG+AGG + chr8_2:10499235-10499254 None:intergenic 50.0%
TCCAAAGACTGAGAGTCGGA+AGG - chr8_2:10499441-10499460 Msa1233640:intron 50.0%
CCAAAGACTGAGAGTCGGAA+GGG - chr8_2:10499442-10499461 Msa1233640:intron 50.0%
TCATGCATGGATGGCTGATG+AGG - chr8_2:10499829-10499848 Msa1233640:intron 50.0%
CACTTGGAGCCAAACATGGA+TGG - chr8_2:10500101-10500120 Msa1233640:intron 50.0%
CTTGGAGCCAAACATGGATG+GGG - chr8_2:10500103-10500122 Msa1233640:intron 50.0%
ACTGTGACCCCATCCATGTT+TGG + chr8_2:10500113-10500132 None:intergenic 50.0%
GGATGGGGTCACAGTAAAAG+AGG - chr8_2:10500118-10500137 Msa1233640:intron 50.0%
GTCACCAACTTGTCAGCCAT+TGG - chr8_2:10500532-10500551 Msa1233640:intron 50.0%
CTCACCAATGGCTGACAAGT+TGG + chr8_2:10500539-10500558 None:intergenic 50.0%
CAGAAGACGCAGACCATGTA+GGG + chr8_2:10501236-10501255 None:intergenic 50.0%
TCAGAAGACGCAGACCATGT+AGG + chr8_2:10501237-10501256 None:intergenic 50.0%
TGGTCTGCGTCTTCTGATAG+AGG - chr8_2:10501240-10501259 Msa1233640:intron 50.0%
!! TTGTAGGCTTCTACTGGCTC+TGG + chr8_2:10501772-10501791 None:intergenic 50.0%
GAAACTTCACAGGCCCATAC+CGG + chr8_2:10501867-10501886 None:intergenic 50.0%
CTTTATCCTTCCAGTGGACC+AGG - chr8_2:10501898-10501917 Msa1233640:intron 50.0%
TGCTGCTGATCCTTCCATCC+CGG - chr8_2:10494239-10494258 Msa1233640:three_prime_UTR 55.0%
TGAAAGCCACAGAACGACCC+GGG + chr8_2:10494260-10494279 None:intergenic 55.0%
CTGAAAGCCACAGAACGACC+CGG + chr8_2:10494261-10494280 None:intergenic 55.0%
TCACGTTCGGGGTTGTGGAA+TGG + chr8_2:10496640-10496659 None:intergenic 55.0%
TGTTCTCACGTTCGGGGTTG+TGG + chr8_2:10496645-10496664 None:intergenic 55.0%
GAGGCTTAGTCACTGACGGA+AGG - chr8_2:10497742-10497761 Msa1233640:intron 55.0%
GAACGGGTGAGCGCAAAGAA+TGG - chr8_2:10499092-10499111 Msa1233640:intron 55.0%
GCCAGACAAAGAGGCTGACT+TGG - chr8_2:10499156-10499175 Msa1233640:intron 55.0%
CCCAAGTCAGCCTCTTTGTC+TGG + chr8_2:10499160-10499179 None:intergenic 55.0%
GACTTGGGTCGTCCAGTTCT+TGG - chr8_2:10499172-10499191 Msa1233640:intron 55.0%
CTTGGGTCGTCCAGTTCTTG+GGG - chr8_2:10499174-10499193 Msa1233640:intron 55.0%
TTGGGTCGTCCAGTTCTTGG+GGG - chr8_2:10499175-10499194 Msa1233640:intron 55.0%
GTGCTTGATCCCCCAAGAAC+TGG + chr8_2:10499187-10499206 None:intergenic 55.0%
TGGGGGATCAAGCACTTTGG+AGG - chr8_2:10499192-10499211 Msa1233640:intron 55.0%
GGGGGATCAAGCACTTTGGA+GGG - chr8_2:10499193-10499212 Msa1233640:intron 55.0%
CCCTTCCGACTCTCAGTCTT+TGG + chr8_2:10499445-10499464 None:intergenic 55.0%
GTCATCGTGCCACGATAGTG+TGG + chr8_2:10500741-10500760 None:intergenic 55.0%
GTCAATCCTGGTCCACTGGA+AGG + chr8_2:10501907-10501926 None:intergenic 55.0%
TCCAGTGGACCAGGATTGAC+CGG - chr8_2:10501907-10501926 Msa1233640:intron 55.0%
GACCAGGATTGACCGGTAGA+GGG - chr8_2:10501914-10501933 Msa1233640:intron 55.0%
ATCCCTCTACCGGTCAATCC+TGG + chr8_2:10501919-10501938 None:intergenic 55.0%
GCTGCTGATCCTTCCATCCC+GGG - chr8_2:10494240-10494259 Msa1233640:three_prime_UTR 60.0%
ACAGAACGACCCGGGATGGA+AGG + chr8_2:10494252-10494271 None:intergenic 60.0%
TTCCATCCCGGGTCGTTCTG+TGG - chr8_2:10494251-10494270 Msa1233640:three_prime_UTR 60.0%
AAGATGGGAGCTCCATCCCC+AGG - chr8_2:10498742-10498761 Msa1233640:intron 60.0%
AGATGGGAGCTCCATCCCCA+GGG - chr8_2:10498743-10498762 Msa1233640:intron 60.0%
ACCGGTCAATCCTGGTCCAC+TGG + chr8_2:10501911-10501930 None:intergenic 60.0%
GGACCAGGATTGACCGGTAG+AGG - chr8_2:10501913-10501932 Msa1233640:intron 60.0%
AGCCACAGAACGACCCGGGA+TGG + chr8_2:10494256-10494275 None:intergenic 65.0%
GATGGGAGCTCCATCCCCAG+GGG - chr8_2:10498744-10498763 Msa1233640:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 10494153 10502114 10494153 ID=Msa1233640;Name=Msa1233640
chr8_2 mRNA 10494153 10502114 10494153 ID=Msa1233640-mRNA-1;Parent=Msa1233640;Name=Msa1233640-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.87|0.55|1|1|1|9|154|823
chr8_2 exon 10494153 10495060 10494153 ID=Msa1233640-mRNA-1:exon:4152;Parent=Msa1233640-mRNA-1
chr8_2 exon 10495354 10495617 10495354 ID=Msa1233640-mRNA-1:exon:4151;Parent=Msa1233640-mRNA-1
chr8_2 exon 10495714 10496027 10495714 ID=Msa1233640-mRNA-1:exon:4150;Parent=Msa1233640-mRNA-1
chr8_2 exon 10496128 10496235 10496128 ID=Msa1233640-mRNA-1:exon:4149;Parent=Msa1233640-mRNA-1
chr8_2 exon 10496360 10496445 10496360 ID=Msa1233640-mRNA-1:exon:4148;Parent=Msa1233640-mRNA-1
chr8_2 exon 10496573 10496827 10496573 ID=Msa1233640-mRNA-1:exon:4147;Parent=Msa1233640-mRNA-1
chr8_2 exon 10496996 10497251 10496996 ID=Msa1233640-mRNA-1:exon:4146;Parent=Msa1233640-mRNA-1
chr8_2 exon 10497349 10497629 10497349 ID=Msa1233640-mRNA-1:exon:4145;Parent=Msa1233640-mRNA-1
chr8_2 exon 10501961 10502114 10501961 ID=Msa1233640-mRNA-1:exon:4144;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10501961 10502114 10501961 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10497349 10497629 10497349 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10496996 10497251 10496996 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10496573 10496827 10496573 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10496360 10496445 10496360 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10496128 10496235 10496128 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10495714 10496027 10495714 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10495354 10495617 10495354 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 CDS 10494307 10495060 10494307 ID=Msa1233640-mRNA-1:cds;Parent=Msa1233640-mRNA-1
chr8_2 three_prime_UTR 10494153 10494306 10494153 ID=Msa1233640-mRNA-1:three_prime_utr;Parent=Msa1233640-mRNA-1
Gene Sequence

>Msa1233640

ATGACTTCATTGGTGTCAGTGTTAGCTAAGAACAACAAGGTCACAAAGCTTAAGGGTATTGTGATCTTTAAGCAAAACAAAGATGCTGCTGCTGATCCTTCCATCCCGGGTCGTTCTGTGGCTTTCAGATTGATTAGTGATTCCACGGCTGATGGAAATGGAAAAGGAAAAGTGGGAGAGCGAACATATTTGGGAAGTCTTATTACCTCGGATGAAACCCAATTTCAATTCAATATTACGTTTGAATGGGACACTGAAAAGATGGGAGCTCCATCCCCAGGGGCTTTTTTTATCGAGAATTTTATGCAAAGTGAACTCTTCCTTGTGAGTTTGACCCTTGATGTTCCAAATCTTGGAACCATCAACTTTATCTGCAACTCATGGATTTACAATGCTAAAAACTATCAAACTGAGCGCATCTTCTTTACCAACAAGACATACCTTCTAAGTGAAACACCAGCTCCATTAGTCTACTATAGACAAGAAGAGTTGAAGACTTTAAGAGGAGATGGAACGGGTGAGCGCAAAGAATGGGATAGGATCTATGACTACGATGTCTACAATGATTTGGGTGAGCCAGACAAAGAGGCTGACTTGGGTCGTCCAGTTCTTGGGGGATCAAGCACTTTGGAGGGAGACACTTTTCCTTACCCTCGAAGGGTAAGATCTGGTAGAGAACCAAGTAAGAAAGATCCAAAGACTGAGAGTCGGAAGGGCAGAATTTACATTCCAAGAGATGAATTACTTCACACAGATGAGAGTTTAATATTCAGTCAAGAGTTTAACACCTTTCAAGATGTGTTGTCACTCTTCAATATTCAAATTAACCGTGATACTGATATACTAAGTAAATTCAACAAAACATCGAGGTCCAACGAACTTTCCCCAATTAATGCTAAATCAGTGGCTAAAAGTTCAACGTATCCAATACCACAAGTGATTGCAGAGGATTATCATGCATGGATGGCTGATGAGGAATTTGCAAGACAGATGATTGCTGGTGTGAATCCGAATGCCATCGAAAAACTTCTGGAGCTTCCAAGAAAGAGCAAGTTAGATAGTAAACTCTATGGTGATAATACCAGCACAATAACCAAAGAACACTTGGAGCCAAACATGGATGGGGTCACAGTAAAAGAGGCTATCGAAGACAATAGATTGTACATACTTGATCACCACGATGCAATCTATCCATATTTGAGGAAAGTAAATGCAACTGACGCAAAGACCTATGCTGCTAGAACCATTCTTTTTGTTAAAGAGGATGGAACTTTGAATCCATTGGCCATTGAGCTAAGTTTGCCACATCCTAATGGTGATAGTTTTGGTCCTGTTAGTAATGTTTACTTGCCCCCAAATAAAGATGTTAAAGATGACGAACCTTTAATTTGGCTCCTTGCAAAGGCATATGCTGTTGTAAATGACTCGTGTTGTCACCAACTTGTCAGCCATTGGTTGAAAACACATGCTGTTGTTGAGCCATTCGTCATAGCAACAAATAGGCATCTTAGCGTGCTTCACCCAATTCATAAACTTTTAGTTCCACACTATCGTGGCACGATGACCATAAATGCACGATCACGAAATATCTTGATCAATGCAGAGGGTATTGTAGAGTCGACATTTTTGTTTGAAAAATATTGTATGGAAATGTCAGCTGTTGTTTACAAGGATTGGGTATTCGCTGAAGAAGGACTACCTACTGATCTAAAAAATAGAGGAGTGGCTGTTGACGATGATTCTTCCCTACATGGTCTGCGTCTTCTGATAGAGGATTATCCATATGCTGTTGATGGACTAGAGATATGGGCTGCTATTAAGTCATGGGTTGATGAATATGTCAATTTCTATTACGAGTCAGATAAAGATGTTAAAGATGATGAGGAACTCAGAGCATTTTGGAAAGAACTTGTAGAAGTGGGTCATGGTGACTTGAAGAATGCTAAGTGGGTTAAAATGGAAACTCGCACAGAGTTGATTGACTCTTGCACTACCCTCATATGGATTGCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAATATCAGTACGGAGGGTACATCCTTAACCGACCAACTAAAACCATAAGATTCATGCCAGAGAAAGGATCCCATGAGTTTAAGGAGCTCGCTAAGGACTACATGAAGACATATTTGGAGACAATCACACCAAAGGTTGAAACCCTTGAAGTTATGAATACTATGCTGGTATTATCCATGCATGATCCTAATGAGGAATACCTTGGACAAAGAACTGAAGGTGATCTTTGGACTTCTGATCCAGAGCCAGTAGAAGCCTACAAAAAGTTTGCAAAGAAATTGATTGAAATTGAGGAAGAGTTCATTCAAAGGAACAATGATGAGTCATTGAAAAACCGGTATGGGCCTGTGAAGTTTCCATACACTCTTCTTTATCCTTCCAGTGGACCAGGATTGACCGGTAGAGGGATTCCCAATAGTGTCTCCATCTAA

Protein sequence

>Msa1233640

MTSLVSVLAKNNKVTKLKGIVIFKQNKDAAADPSIPGRSVAFRLISDSTADGNGKGKVGERTYLGSLITSDETQFQFNITFEWDTEKMGAPSPGAFFIENFMQSELFLVSLTLDVPNLGTINFICNSWIYNAKNYQTERIFFTNKTYLLSETPAPLVYYRQEELKTLRGDGTGERKEWDRIYDYDVYNDLGEPDKEADLGRPVLGGSSTLEGDTFPYPRRVRSGREPSKKDPKTESRKGRIYIPRDELLHTDESLIFSQEFNTFQDVLSLFNIQINRDTDILSKFNKTSRSNELSPINAKSVAKSSTYPIPQVIAEDYHAWMADEEFARQMIAGVNPNAIEKLLELPRKSKLDSKLYGDNTSTITKEHLEPNMDGVTVKEAIEDNRLYILDHHDAIYPYLRKVNATDAKTYAARTILFVKEDGTLNPLAIELSLPHPNGDSFGPVSNVYLPPNKDVKDDEPLIWLLAKAYAVVNDSCCHQLVSHWLKTHAVVEPFVIATNRHLSVLHPIHKLLVPHYRGTMTINARSRNILINAEGIVESTFLFEKYCMEMSAVVYKDWVFAEEGLPTDLKNRGVAVDDDSSLHGLRLLIEDYPYAVDGLEIWAAIKSWVDEYVNFYYESDKDVKDDEELRAFWKELVEVGHGDLKNAKWVKMETRTELIDSCTTLIWIASALHAAVNFGQYQYGGYILNRPTKTIRFMPEKGSHEFKELAKDYMKTYLETITPKVETLEVMNTMLVLSMHDPNEEYLGQRTEGDLWTSDPEPVEAYKKFAKKLIEIEEEFIQRNNDESLKNRYGPVKFPYTLLYPSSGPGLTGRGIPNSVSI*