AlfalfaGEDB | Msa0989480

M. sativa cultivar zhongmu-4 / Msa0989480

KEGG: K07213
GO: -
PFAM: PF00403.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989480	XP_003630822.1	94.697	132	7	0	1	132	1	132	4.85e-86	257

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989480	sp\|Q8LDS4\|NAKR1_ARATH	60.938	64	25	0	66	129	250	313	3.12e-22	92.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989480	G7L8Z8	94.697	132	7	0	1	132	1	132	2.31e-86	257

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000370	Msa0989480	0.808864	2.511568e-50	-8.615850e-47
Msa0004590	Msa0989480	0.803887	2.812946e-49	-8.615850e-47
Msa0019830	Msa0989480	0.812239	4.686554e-51	-8.615850e-47
Msa0032390	Msa0989480	0.800874	1.174620e-48	-8.615850e-47
Msa0036810	Msa0989480	0.831728	1.416372e-55	-8.615850e-47
Msa0045620	Msa0989480	0.804666	1.936092e-49	-8.615850e-47
Msa0045810	Msa0989480	0.826130	3.211044e-54	-8.615850e-47
Msa0046200	Msa0989480	0.806997	6.266659e-50	-8.615850e-47
Msa0057860	Msa0989480	0.816382	5.691988e-52	-8.615850e-47
Msa0062010	Msa0989480	0.809358	1.968444e-50	-8.615850e-47
Msa0102920	Msa0989480	0.800880	1.170966e-48	-8.615850e-47
Msa0120050	Msa0989480	0.813506	2.472656e-51	-8.615850e-47
Msa0623250	Msa0989480	0.820018	8.562639e-53	-8.615850e-47
Msa0623310	Msa0989480	0.809002	2.345989e-50	-8.615850e-47
Msa0626980	Msa0989480	0.800698	1.275441e-48	-8.615850e-47
Msa0673940	Msa0989480	0.807169	5.765036e-50	-8.615850e-47
Msa0689830	Msa0989480	0.815563	8.671737e-52	-8.615850e-47
Msa0761830	Msa0989480	0.801205	1.004842e-48	-8.615850e-47
Msa0804170	Msa0989480	0.842494	2.499483e-58	-8.615850e-47
Msa0136690	Msa0989480	0.803145	4.009274e-49	-8.615850e-47
Msa0147680	Msa0989480	0.838125	3.463167e-57	-8.615850e-47
Msa0158760	Msa0989480	0.814673	1.366758e-51	-8.615850e-47
Msa0206370	Msa0989480	0.820566	6.410071e-53	-8.615850e-47
Msa0422820	Msa0989480	0.803742	3.014391e-49	-8.615850e-47
Msa0987670	Msa0989480	0.800290	1.544422e-48	-8.615850e-47
Msa0989480	Msa1015560	0.813251	2.813455e-51	-8.615850e-47
Msa0989480	Msa1021560	0.809596	1.749961e-50	-8.615850e-47
Msa0989480	Msa1021620	0.804797	1.817861e-49	-8.615850e-47
Msa0989480	Msa1124210	0.813809	2.121099e-51	-8.615850e-47
Msa0989480	Msa1165460	0.817235	3.663136e-52	-8.615850e-47
Msa0989480	Msa1170320	0.816837	4.500764e-52	-8.615850e-47
Msa0989480	Msa1206920	0.809642	1.711010e-50	-8.615850e-47
Msa0989480	Msa1217890	0.813604	2.352987e-51	-8.615850e-47
Msa0989480	Msa1257200	0.815831	7.556159e-52	-8.615850e-47
Msa0989480	Msa1313840	0.808043	3.759336e-50	-8.615850e-47
Msa0989480	Msa1323120	0.806706	7.220646e-50	-8.615850e-47
Msa0989480	Msa1328280	0.811675	6.217269e-51	-8.615850e-47
Msa0989480	Msa1342760	0.823301	1.491226e-53	-8.615850e-47
Msa0989480	Msa1371800	0.801006	1.103572e-48	-8.615850e-47
Msa0989480	Msa1376310	0.800241	1.580521e-48	-8.615850e-47
Msa0989480	Msa1383220	0.800997	1.108562e-48	-8.615850e-47
Msa0989480	Msa1395050	0.807191	5.702623e-50	-8.615850e-47
Msa0989480	Msa1407670	0.814202	1.736818e-51	-8.615850e-47
Msa0989480	Msa1413020	0.841626	4.239469e-58	-8.615850e-47
Msa0989480	Msa1449770	0.819722	1.000485e-52	-8.615850e-47
Msa0989480	Msa1462780	0.816405	5.624222e-52	-8.615850e-47
Msa0260980	Msa0989480	0.802095	6.600013e-49	-8.615850e-47
Msa0278480	Msa0989480	0.806712	7.199827e-50	-8.615850e-47
Msa0299030	Msa0989480	0.809952	1.467449e-50	-8.615850e-47
Msa0328100	Msa0989480	0.802782	4.765255e-49	-8.615850e-47
Msa0349930	Msa0989480	0.846625	1.931033e-59	-8.615850e-47
Msa0523720	Msa0989480	0.819256	1.277454e-52	-8.615850e-47
Msa0530660	Msa0989480	0.801456	8.928231e-49	-8.615850e-47
Msa0566460	Msa0989480	0.808956	2.399782e-50	-8.615850e-47
Msa0574320	Msa0989480	0.911790	4.078087e-83	-8.615850e-47
Msa0576610	Msa0989480	0.895360	1.031947e-75	-8.615850e-47
Msa0587180	Msa0989480	0.812299	4.546655e-51	-8.615850e-47
Msa0602050	Msa0989480	0.804176	2.449262e-49	-8.615850e-47
Msa0880910	Msa0989480	0.820677	6.045818e-53	-8.615850e-47
Msa0932140	Msa0989480	0.824827	6.535356e-54	-8.615850e-47
Msa0932150	Msa0989480	0.814470	1.515595e-51	-8.615850e-47
Msa0946310	Msa0989480	0.820595	6.313040e-53	-8.615850e-47
Msa0967780	Msa0989480	0.820777	5.732550e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989480	MtrunA17_Chr8g0390711	94.697	132	7	0	1	132	1	132	4.46e-90	257
Msa0989480	MtrunA17_Chr6g0485081	80.153	131	25	1	1	131	1	130	2.21e-75	220
Msa0989480	MtrunA17_Chr1g0182101	41.176	119	57	3	17	131	141	250	1.44e-23	92.0
Msa0989480	MtrunA17_Chr4g0050571	53.030	66	31	0	66	131	101	166	2.86e-23	89.0
Msa0989480	MtrunA17_Chr4g0030661	56.061	66	29	0	64	129	210	275	1.11e-21	87.8
Msa0989480	MtrunA17_Chr7g0263491	50.000	64	32	0	66	129	209	272	9.52e-20	82.4
Msa0989480	MtrunA17_Chr1g0198341	43.284	67	37	1	66	131	4	70	4.83e-12	57.8
Msa0989480	MtrunA17_Chr7g0218981	40.000	65	38	1	66	129	4	68	1.95e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0989480	AT3G24450.1	56.835	139	52	4	1	131	1	139	1.06e-43	140
Msa0989480	AT5G02600.2	60.938	64	25	0	66	129	250	313	3.18e-23	92.4
Msa0989480	AT5G02600.1	60.938	64	25	0	66	129	250	313	3.18e-23	92.4
Msa0989480	AT2G37390.1	50.000	76	38	0	56	131	171	246	6.13e-23	90.5
Msa0989480	AT2G37390.2	54.545	66	30	0	66	131	180	245	9.89e-23	90.1
Msa0989480	AT3G53530.1	56.716	67	27	1	66	130	168	234	8.86e-22	87.4
Msa0989480	AT2G28660.1	57.812	64	27	0	66	129	183	246	1.91e-20	84.3
Msa0989480	AT3G53530.2	55.882	68	27	2	66	130	168	235	5.48e-20	82.8
Msa0989480	AT1G66240.1	40.299	67	39	1	66	131	33	99	4.16e-12	58.9
Msa0989480	AT3G56240.3	40.000	65	38	1	66	129	3	67	5.99e-11	56.2
Msa0989480	AT3G56240.1	40.000	65	38	1	66	129	3	67	5.99e-11	56.2

Find 45 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCATTATCAAAATTTA+TGG	0.091750	6_4:+46414021	None:intergenic
AATCATGCACATTTGCTTTA+TGG	0.118411	6_4:-46412599	Msa0989480:three_prime_UTR
GCCAATGACAGCAACCATTT+TGG	0.233480	6_4:+46412938	None:intergenic
ATTGGTGACATAACTATAAA+TGG	0.241539	6_4:+46414395	None:intergenic
CGGTTGATCTTTCTCCTTCT+CGG	0.262141	6_4:-46412625	Msa0989480:three_prime_UTR
GATTCCTTCAACTCACATAA+TGG	0.306207	6_4:-46414113	Msa0989480:exon
GTTCTAGCAACTCTCTTTGC+AGG	0.337096	6_4:-46412680	Msa0989480:three_prime_UTR
TGTCTCCATTGGATTTAGTT+TGG	0.342390	6_4:-46414362	Msa0989480:five_prime_UTR
ATTCCTTCAACTCACATAAT+GGG	0.359263	6_4:-46414112	Msa0989480:exon
CACAACACTTCCTTATGTTA+AGG	0.360864	6_4:+46414170	None:intergenic
ATCTCTGTCACTTGCAATCA+AGG	0.372146	6_4:+46413988	None:intergenic
ACCAAAATGGTTGCTGTCAT+TGG	0.375586	6_4:-46412939	Msa0989480:CDS
TTCCCCATTATGTGAGTTGA+AGG	0.395303	6_4:+46414109	None:intergenic
GTTTGGTCAATGTAATTTAG+TGG	0.403129	6_4:-46414345	Msa0989480:five_prime_UTR
ATAGTTATGTCACCAATGTT+TGG	0.415119	6_4:-46414389	Msa0989480:five_prime_UTR
AACAGGAGTGAGCTCATATA+AGG	0.416871	6_4:-46412973	Msa0989480:intron
CGATTGAAGGATGTTGTTGC+TGG	0.427133	6_4:-46413953	Msa0989480:CDS
GGTAGATCTAGACACCAAAA+TGG	0.437295	6_4:-46412952	Msa0989480:CDS
TGTTTGGTATCTGTCTCCAT+TGG	0.444454	6_4:-46414373	Msa0989480:five_prime_UTR
GGGGAAACTTGGTAAAATGT+TGG	0.462441	6_4:-46414092	Msa0989480:CDS
AAACAGAAATGTATTAAAAG+AGG	0.466049	6_4:+46414421	None:intergenic
ACTCACATAATGGGGAAACT+TGG	0.481047	6_4:-46414103	Msa0989480:exon
TATGCAGATAGTAATATTGA+AGG	0.490687	6_4:-46413375	Msa0989480:intron
ATTAATAGAGAGATTAGAAA+AGG	0.495760	6_4:+46414467	None:intergenic
TGCTAGAACATGCATTGCAT+GGG	0.514201	6_4:+46412694	None:intergenic
ATGACAAAATTTAATCTCAC+TGG	0.518273	6_4:-46414314	Msa0989480:five_prime_UTR
ACACTTTGCAACACTTCGAA+TGG	0.529196	6_4:+46412906	None:intergenic
CTTTATGGTGCAGAGGCTGT+AGG	0.534556	6_4:-46412584	Msa0989480:three_prime_UTR
TTATTCTAGATAAATTCCAT+TGG	0.541838	6_4:-46414276	Msa0989480:five_prime_UTR
TTGCTAGAACATGCATTGCA+TGG	0.544380	6_4:+46412693	None:intergenic
AAACATATATCAAAGCTTGA+AGG	0.550802	6_4:-46413314	Msa0989480:intron
TGCACAGCCATGACAATGCA+TGG	0.563796	6_4:+46413349	None:intergenic
AGTGTTGCAAAGTGTATCAA+AGG	0.566152	6_4:-46412898	Msa0989480:CDS
ATTGACCAAACTAAATCCAA+TGG	0.577521	6_4:+46414357	None:intergenic
TCTCTGTCACTTGCAATCAA+GGG	0.585982	6_4:+46413989	None:intergenic
TTGGTGGAATCTGCTAATGC+CGG	0.598406	6_4:+46412800	None:intergenic
TCTGCATTGCTAAACTCCAC+CGG	0.607232	6_4:-46412819	Msa0989480:three_prime_UTR
TTCCTTCAACTCACATAATG+GGG	0.610996	6_4:-46414111	Msa0989480:exon
GTGGAATCTGCTAATGCCGG+TGG	0.615330	6_4:+46412803	None:intergenic
ACATTTGCTTTATGGTGCAG+AGG	0.619699	6_4:-46412591	Msa0989480:three_prime_UTR
TGTGCATGATTCATCCGAGA+AGG	0.632281	6_4:+46412611	None:intergenic
TGTTGCTGGAAAGCAAACAT+TGG	0.652091	6_4:-46413939	Msa0989480:CDS
AAGGTATCCATGCATTGTCA+TGG	0.661899	6_4:-46413356	Msa0989480:CDS
TGGAGACAGATACCAAACAT+TGG	0.669694	6_4:+46414377	None:intergenic
GCTAGAACATGCATTGCATG+GGG	0.698020	6_4:+46412695	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAACTCATTATCAAAATTTA+TGG	+	chr6_4:46412973-46412992	None:intergenic	15.0%
!!!	ATTTTAAAATATAAGCAATC+TGG	+	chr6_4:46413168-46413187	None:intergenic	15.0%
!!	ACAAATACAAACAAAATTAA+AGG	+	chr6_4:46413718-46413737	None:intergenic	15.0%
!!!	ATTTTTTCTTTATAATTAGC+AGG	+	chr6_4:46414146-46414165	None:intergenic	15.0%
!!!	CATCTTTTAATTAGTAAATT+TGG	-	chr6_4:46414470-46414489	Msa0989480:five_prime_UTR	15.0%
!!	AAACTCATTATCAAAATTTA+TGG	+	chr6_4:46412973-46412992	None:intergenic	15.0%
!!!	ATTTTAAAATATAAGCAATC+TGG	+	chr6_4:46413168-46413187	None:intergenic	15.0%
!!	ACAAATACAAACAAAATTAA+AGG	+	chr6_4:46413718-46413737	None:intergenic	15.0%
!!!	ATTTTTTCTTTATAATTAGC+AGG	+	chr6_4:46414146-46414165	None:intergenic	15.0%
!!	ATTAATAGAGAGATTAGAAA+AGG	+	chr6_4:46412527-46412546	None:intergenic	20.0%
!!	AAACAGAAATGTATTAAAAG+AGG	+	chr6_4:46412573-46412592	None:intergenic	20.0%
!!	TTATTCTAGATAAATTCCAT+TGG	-	chr6_4:46412715-46412734	Msa0989480:three_prime_UTR	20.0%
!!!	TTAAGGTGAAAATTTTATTG+GGG	+	chr6_4:46412764-46412783	None:intergenic	20.0%
!!!	CTTAAGGTGAAAATTTTATT+GGG	+	chr6_4:46412765-46412784	None:intergenic	20.0%
!!!	TTAGAATATTGATAATGTAG+AGG	-	chr6_4:46413426-46413445	Msa0989480:intron	20.0%
!!	GATAATATATCTCATAAGAT+GGG	+	chr6_4:46413839-46413858	None:intergenic	20.0%
!!	AGATAATATATCTCATAAGA+TGG	+	chr6_4:46413840-46413859	None:intergenic	20.0%
!!	TAAGATATAGTATCAAAATG+TGG	-	chr6_4:46413933-46413952	Msa0989480:CDS	20.0%
!!	ATTAATAGAGAGATTAGAAA+AGG	+	chr6_4:46412527-46412546	None:intergenic	20.0%
!!	AAACAGAAATGTATTAAAAG+AGG	+	chr6_4:46412573-46412592	None:intergenic	20.0%
!!	TTATTCTAGATAAATTCCAT+TGG	-	chr6_4:46412715-46412734	Msa0989480:three_prime_UTR	20.0%
!!!	TTAAGGTGAAAATTTTATTG+GGG	+	chr6_4:46412764-46412783	None:intergenic	20.0%
!!!	CTTAAGGTGAAAATTTTATT+GGG	+	chr6_4:46412765-46412784	None:intergenic	20.0%
!!!	TTAGAATATTGATAATGTAG+AGG	-	chr6_4:46413426-46413445	Msa0989480:intron	20.0%
!!	GATAATATATCTCATAAGAT+GGG	+	chr6_4:46413839-46413858	None:intergenic	20.0%
!!	AGATAATATATCTCATAAGA+TGG	+	chr6_4:46413840-46413859	None:intergenic	20.0%
!!	TAAGATATAGTATCAAAATG+TGG	-	chr6_4:46413933-46413952	Msa0989480:CDS	20.0%
!!	ATTGGTGACATAACTATAAA+TGG	+	chr6_4:46412599-46412618	None:intergenic	25.0%
!	ATGACAAAATTTAATCTCAC+TGG	-	chr6_4:46412677-46412696	Msa0989480:three_prime_UTR	25.0%
!!	GCTTAAGGTGAAAATTTTAT+TGG	+	chr6_4:46412766-46412785	None:intergenic	25.0%
!!!	TTCCTTTTTTCCTTAACATA+AGG	-	chr6_4:46412811-46412830	Msa0989480:three_prime_UTR	25.0%
!	TTCCTTATGTTAAGGAAAAA+AGG	+	chr6_4:46412816-46412835	None:intergenic	25.0%
!	TTAAAATATAAGCAATCTGG+TGG	+	chr6_4:46413165-46413184	None:intergenic	25.0%
!	ATTAACATTGTGCAAGTATA+GGG	+	chr6_4:46413194-46413213	None:intergenic	25.0%
!	TGAAATCAGATCAAGATAAA+GGG	+	chr6_4:46413226-46413245	None:intergenic	25.0%
!	TTGAAATCAGATCAAGATAA+AGG	+	chr6_4:46413227-46413246	None:intergenic	25.0%
!	AAGTTAAAAATGACAGAGAT+GGG	+	chr6_4:46413251-46413270	None:intergenic	25.0%
!	TAAGTTAAAAATGACAGAGA+TGG	+	chr6_4:46413252-46413271	None:intergenic	25.0%
!	GAACTATAATGACATCAAAT+CGG	+	chr6_4:46413299-46413318	None:intergenic	25.0%
!	ATTCACATCTTACAATTTCA+AGG	-	chr6_4:46413398-46413417	Msa0989480:intron	25.0%
!	TAAAATTTCAGAGATCAACT+TGG	-	chr6_4:46413476-46413495	Msa0989480:intron	25.0%
!	TGGATATTTACTCTTCATTA+TGG	-	chr6_4:46413496-46413515	Msa0989480:intron	25.0%
!	TATGCAGATAGTAATATTGA+AGG	-	chr6_4:46413616-46413635	Msa0989480:intron	25.0%
!	AAACATATATCAAAGCTTGA+AGG	-	chr6_4:46413677-46413696	Msa0989480:intron	25.0%
!	GAAGATGAAACAAATTGTAT+TGG	-	chr6_4:46413778-46413797	Msa0989480:intron	25.0%
!	TTAATGTGATAAAAGCAAAG+AGG	-	chr6_4:46413801-46413820	Msa0989480:intron	25.0%
!	TTAGCCATCTTGATATATAA+AGG	-	chr6_4:46413859-46413878	Msa0989480:intron	25.0%
!!	TGAATTTTTCATATGTGACT+TGG	+	chr6_4:46413885-46413904	None:intergenic	25.0%
!!	TTTTCTTTATAATTAGCAGG+TGG	+	chr6_4:46414143-46414162	None:intergenic	25.0%
!	ACAGAGAGAAAAAAAAATGT+CGG	-	chr6_4:46414346-46414365	Msa0989480:five_prime_UTR	25.0%
!!	ATTGGTGACATAACTATAAA+TGG	+	chr6_4:46412599-46412618	None:intergenic	25.0%
!	ATGACAAAATTTAATCTCAC+TGG	-	chr6_4:46412677-46412696	Msa0989480:three_prime_UTR	25.0%
!!	GCTTAAGGTGAAAATTTTAT+TGG	+	chr6_4:46412766-46412785	None:intergenic	25.0%
!!!	TTCCTTTTTTCCTTAACATA+AGG	-	chr6_4:46412811-46412830	Msa0989480:three_prime_UTR	25.0%
!	TTCCTTATGTTAAGGAAAAA+AGG	+	chr6_4:46412816-46412835	None:intergenic	25.0%
!	TTAAAATATAAGCAATCTGG+TGG	+	chr6_4:46413165-46413184	None:intergenic	25.0%
!	ATTAACATTGTGCAAGTATA+GGG	+	chr6_4:46413194-46413213	None:intergenic	25.0%
!	TGAAATCAGATCAAGATAAA+GGG	+	chr6_4:46413226-46413245	None:intergenic	25.0%
!	TTGAAATCAGATCAAGATAA+AGG	+	chr6_4:46413227-46413246	None:intergenic	25.0%
!	AAGTTAAAAATGACAGAGAT+GGG	+	chr6_4:46413251-46413270	None:intergenic	25.0%
!	TAAGTTAAAAATGACAGAGA+TGG	+	chr6_4:46413252-46413271	None:intergenic	25.0%
!	GAACTATAATGACATCAAAT+CGG	+	chr6_4:46413299-46413318	None:intergenic	25.0%
!	ATTCACATCTTACAATTTCA+AGG	-	chr6_4:46413398-46413417	Msa0989480:intron	25.0%
!	TAAAATTTCAGAGATCAACT+TGG	-	chr6_4:46413476-46413495	Msa0989480:intron	25.0%
!	TGGATATTTACTCTTCATTA+TGG	-	chr6_4:46413496-46413515	Msa0989480:intron	25.0%
!	TATGCAGATAGTAATATTGA+AGG	-	chr6_4:46413616-46413635	Msa0989480:intron	25.0%
!	AAACATATATCAAAGCTTGA+AGG	-	chr6_4:46413677-46413696	Msa0989480:intron	25.0%
!	GAAGATGAAACAAATTGTAT+TGG	-	chr6_4:46413778-46413797	Msa0989480:intron	25.0%
!	TTAATGTGATAAAAGCAAAG+AGG	-	chr6_4:46413801-46413820	Msa0989480:intron	25.0%
!	TTAGCCATCTTGATATATAA+AGG	-	chr6_4:46413859-46413878	Msa0989480:intron	25.0%
!!	TGAATTTTTCATATGTGACT+TGG	+	chr6_4:46413885-46413904	None:intergenic	25.0%
!!	TTTTCTTTATAATTAGCAGG+TGG	+	chr6_4:46414143-46414162	None:intergenic	25.0%
!	ACAGAGAGAAAAAAAAATGT+CGG	-	chr6_4:46414346-46414365	Msa0989480:five_prime_UTR	25.0%
	ATAGTTATGTCACCAATGTT+TGG	-	chr6_4:46412602-46412621	Msa0989480:three_prime_UTR	30.0%
	ATTGACCAAACTAAATCCAA+TGG	+	chr6_4:46412637-46412656	None:intergenic	30.0%
	GTTTGGTCAATGTAATTTAG+TGG	-	chr6_4:46412646-46412665	Msa0989480:three_prime_UTR	30.0%
	TCAAATTGCACAAAAACCAA+TGG	+	chr6_4:46412734-46412753	None:intergenic	30.0%
	AAAAAAGGAACATCAGGTAT+GGG	+	chr6_4:46412801-46412820	None:intergenic	30.0%
	TTAAGGAAAAAAGGAACATC+AGG	+	chr6_4:46412807-46412826	None:intergenic	30.0%
!!!	TGTGTTTTGAGAGCATATAT+AGG	-	chr6_4:46412850-46412869	Msa0989480:exon	30.0%
	ATTCCTTCAACTCACATAAT+GGG	-	chr6_4:46412879-46412898	Msa0989480:CDS	30.0%
!!	GATACATTCTGTTTTTCTTC+TGG	-	chr6_4:46412921-46412940	Msa0989480:CDS	30.0%
	TGATCAAAAACTACGATTGA+AGG	-	chr6_4:46413025-46413044	Msa0989480:intron	30.0%
	GATTAACATTGTGCAAGTAT+AGG	+	chr6_4:46413195-46413214	None:intergenic	30.0%
	AATATATCTCATAAGATGGG+AGG	+	chr6_4:46413836-46413855	None:intergenic	30.0%
!	TTGGCCTTTATATATCAAGA+TGG	+	chr6_4:46413866-46413885	None:intergenic	30.0%
	TATAGTATCAAAATGTGGCA+TGG	-	chr6_4:46413938-46413957	Msa0989480:CDS	30.0%
!	AGGTTAAAAATGCACAGTTT+TGG	-	chr6_4:46414113-46414132	Msa0989480:exon	30.0%
	AATCATGCACATTTGCTTTA+TGG	-	chr6_4:46414392-46414411	Msa0989480:five_prime_UTR	30.0%
	ATAGTTATGTCACCAATGTT+TGG	-	chr6_4:46412602-46412621	Msa0989480:three_prime_UTR	30.0%
	ATTGACCAAACTAAATCCAA+TGG	+	chr6_4:46412637-46412656	None:intergenic	30.0%
	GTTTGGTCAATGTAATTTAG+TGG	-	chr6_4:46412646-46412665	Msa0989480:three_prime_UTR	30.0%
	TCAAATTGCACAAAAACCAA+TGG	+	chr6_4:46412734-46412753	None:intergenic	30.0%
	AAAAAAGGAACATCAGGTAT+GGG	+	chr6_4:46412801-46412820	None:intergenic	30.0%
	TTAAGGAAAAAAGGAACATC+AGG	+	chr6_4:46412807-46412826	None:intergenic	30.0%
!!!	TGTGTTTTGAGAGCATATAT+AGG	-	chr6_4:46412850-46412869	Msa0989480:exon	30.0%
	ATTCCTTCAACTCACATAAT+GGG	-	chr6_4:46412879-46412898	Msa0989480:CDS	30.0%
!!	GATACATTCTGTTTTTCTTC+TGG	-	chr6_4:46412921-46412940	Msa0989480:CDS	30.0%
	TGATCAAAAACTACGATTGA+AGG	-	chr6_4:46413025-46413044	Msa0989480:intron	30.0%
	GATTAACATTGTGCAAGTAT+AGG	+	chr6_4:46413195-46413214	None:intergenic	30.0%
	AATATATCTCATAAGATGGG+AGG	+	chr6_4:46413836-46413855	None:intergenic	30.0%
!	TTGGCCTTTATATATCAAGA+TGG	+	chr6_4:46413866-46413885	None:intergenic	30.0%
	TATAGTATCAAAATGTGGCA+TGG	-	chr6_4:46413938-46413957	Msa0989480:CDS	30.0%
!	AGGTTAAAAATGCACAGTTT+TGG	-	chr6_4:46414113-46414132	Msa0989480:exon	30.0%
	AATCATGCACATTTGCTTTA+TGG	-	chr6_4:46414392-46414411	Msa0989480:five_prime_UTR	30.0%
	TGTCTCCATTGGATTTAGTT+TGG	-	chr6_4:46412629-46412648	Msa0989480:three_prime_UTR	35.0%
	GGGAAAAAAGAAGAAGCTTA+AGG	+	chr6_4:46412781-46412800	None:intergenic	35.0%
	GAAAAAAGGAACATCAGGTA+TGG	+	chr6_4:46412802-46412821	None:intergenic	35.0%
	CACAACACTTCCTTATGTTA+AGG	+	chr6_4:46412824-46412843	None:intergenic	35.0%
	GATTCCTTCAACTCACATAA+TGG	-	chr6_4:46412878-46412897	Msa0989480:CDS	35.0%
	TTCCTTCAACTCACATAATG+GGG	-	chr6_4:46412880-46412899	Msa0989480:CDS	35.0%
!	GGCTTTTCAATTGAAACCTA+AGG	-	chr6_4:46413073-46413092	Msa0989480:intron	35.0%
	GAGAAGAAAAACTTCACCTT+AGG	+	chr6_4:46413092-46413111	None:intergenic	35.0%
	ATAGTTCCTGCAAATACCAA+CGG	-	chr6_4:46413312-46413331	Msa0989480:intron	35.0%
	AGTGTTGCAAAGTGTATCAA+AGG	-	chr6_4:46414093-46414112	Msa0989480:CDS	35.0%
!!	TATGTCTACTTTTGTCTTGG+TGG	+	chr6_4:46414210-46414229	None:intergenic	35.0%
!!	GAGTATGTCTACTTTTGTCT+TGG	+	chr6_4:46414213-46414232	None:intergenic	35.0%
	TGTCTCCATTGGATTTAGTT+TGG	-	chr6_4:46412629-46412648	Msa0989480:three_prime_UTR	35.0%
	GGGAAAAAAGAAGAAGCTTA+AGG	+	chr6_4:46412781-46412800	None:intergenic	35.0%
	GAAAAAAGGAACATCAGGTA+TGG	+	chr6_4:46412802-46412821	None:intergenic	35.0%
	CACAACACTTCCTTATGTTA+AGG	+	chr6_4:46412824-46412843	None:intergenic	35.0%
	GATTCCTTCAACTCACATAA+TGG	-	chr6_4:46412878-46412897	Msa0989480:CDS	35.0%
	TTCCTTCAACTCACATAATG+GGG	-	chr6_4:46412880-46412899	Msa0989480:CDS	35.0%
!	GGCTTTTCAATTGAAACCTA+AGG	-	chr6_4:46413073-46413092	Msa0989480:intron	35.0%
	GAGAAGAAAAACTTCACCTT+AGG	+	chr6_4:46413092-46413111	None:intergenic	35.0%
	ATAGTTCCTGCAAATACCAA+CGG	-	chr6_4:46413312-46413331	Msa0989480:intron	35.0%
	AGTGTTGCAAAGTGTATCAA+AGG	-	chr6_4:46414093-46414112	Msa0989480:CDS	35.0%
!!	TATGTCTACTTTTGTCTTGG+TGG	+	chr6_4:46414210-46414229	None:intergenic	35.0%
!!	GAGTATGTCTACTTTTGTCT+TGG	+	chr6_4:46414213-46414232	None:intergenic	35.0%
	TGGAGACAGATACCAAACAT+TGG	+	chr6_4:46412617-46412636	None:intergenic	40.0%
	TGTTTGGTATCTGTCTCCAT+TGG	-	chr6_4:46412618-46412637	Msa0989480:three_prime_UTR	40.0%
!	TTCCCCATTATGTGAGTTGA+AGG	+	chr6_4:46412885-46412904	None:intergenic	40.0%
!	ACTCACATAATGGGGAAACT+TGG	-	chr6_4:46412888-46412907	Msa0989480:CDS	40.0%
	GGGGAAACTTGGTAAAATGT+TGG	-	chr6_4:46412899-46412918	Msa0989480:CDS	40.0%
!	TCTCTGTCACTTGCAATCAA+GGG	+	chr6_4:46413005-46413024	None:intergenic	40.0%
!	ATCTCTGTCACTTGCAATCA+AGG	+	chr6_4:46413006-46413025	None:intergenic	40.0%
	TGTTGCTGGAAAGCAAACAT+TGG	-	chr6_4:46413052-46413071	Msa0989480:intron	40.0%
!	AAGGTATCCATGCATTGTCA+TGG	-	chr6_4:46413635-46413654	Msa0989480:intron	40.0%
	AATGTGGCATGGTATAGACA+TGG	-	chr6_4:46413949-46413968	Msa0989480:CDS	40.0%
	ATGTGGCATGGTATAGACAT+GGG	-	chr6_4:46413950-46413969	Msa0989480:CDS	40.0%
	GACTCTTTGCACTTATGAAC+AGG	-	chr6_4:46414001-46414020	Msa0989480:CDS	40.0%
	AACAGGAGTGAGCTCATATA+AGG	-	chr6_4:46414018-46414037	Msa0989480:CDS	40.0%
	GGTAGATCTAGACACCAAAA+TGG	-	chr6_4:46414039-46414058	Msa0989480:CDS	40.0%
	ACCAAAATGGTTGCTGTCAT+TGG	-	chr6_4:46414052-46414071	Msa0989480:CDS	40.0%
	ACACTTTGCAACACTTCGAA+TGG	+	chr6_4:46414088-46414107	None:intergenic	40.0%
	TGCTAGAACATGCATTGCAT+GGG	+	chr6_4:46414300-46414319	None:intergenic	40.0%
	TTGCTAGAACATGCATTGCA+TGG	+	chr6_4:46414301-46414320	None:intergenic	40.0%
	ACATTTGCTTTATGGTGCAG+AGG	-	chr6_4:46414400-46414419	Msa0989480:five_prime_UTR	40.0%
	TGGAGACAGATACCAAACAT+TGG	+	chr6_4:46412617-46412636	None:intergenic	40.0%
	TGTTTGGTATCTGTCTCCAT+TGG	-	chr6_4:46412618-46412637	Msa0989480:three_prime_UTR	40.0%
!	TTCCCCATTATGTGAGTTGA+AGG	+	chr6_4:46412885-46412904	None:intergenic	40.0%
!	ACTCACATAATGGGGAAACT+TGG	-	chr6_4:46412888-46412907	Msa0989480:CDS	40.0%
	GGGGAAACTTGGTAAAATGT+TGG	-	chr6_4:46412899-46412918	Msa0989480:CDS	40.0%
!	TCTCTGTCACTTGCAATCAA+GGG	+	chr6_4:46413005-46413024	None:intergenic	40.0%
!	ATCTCTGTCACTTGCAATCA+AGG	+	chr6_4:46413006-46413025	None:intergenic	40.0%
	TGTTGCTGGAAAGCAAACAT+TGG	-	chr6_4:46413052-46413071	Msa0989480:intron	40.0%
!	AAGGTATCCATGCATTGTCA+TGG	-	chr6_4:46413635-46413654	Msa0989480:intron	40.0%
	AATGTGGCATGGTATAGACA+TGG	-	chr6_4:46413949-46413968	Msa0989480:CDS	40.0%
	ATGTGGCATGGTATAGACAT+GGG	-	chr6_4:46413950-46413969	Msa0989480:CDS	40.0%
	GACTCTTTGCACTTATGAAC+AGG	-	chr6_4:46414001-46414020	Msa0989480:CDS	40.0%
	AACAGGAGTGAGCTCATATA+AGG	-	chr6_4:46414018-46414037	Msa0989480:CDS	40.0%
	GGTAGATCTAGACACCAAAA+TGG	-	chr6_4:46414039-46414058	Msa0989480:CDS	40.0%
	ACCAAAATGGTTGCTGTCAT+TGG	-	chr6_4:46414052-46414071	Msa0989480:CDS	40.0%
	ACACTTTGCAACACTTCGAA+TGG	+	chr6_4:46414088-46414107	None:intergenic	40.0%
	TGCTAGAACATGCATTGCAT+GGG	+	chr6_4:46414300-46414319	None:intergenic	40.0%
	TTGCTAGAACATGCATTGCA+TGG	+	chr6_4:46414301-46414320	None:intergenic	40.0%
	ACATTTGCTTTATGGTGCAG+AGG	-	chr6_4:46414400-46414419	Msa0989480:five_prime_UTR	40.0%
	CGATTGAAGGATGTTGTTGC+TGG	-	chr6_4:46413038-46413057	Msa0989480:intron	45.0%
	TTCCTGCAAATACCAACGGA+AGG	-	chr6_4:46413316-46413335	Msa0989480:CDS	45.0%
!	TCTCATAAGATGGGAGGTGT+GGG	+	chr6_4:46413830-46413849	None:intergenic	45.0%
	ATCTCATAAGATGGGAGGTG+TGG	+	chr6_4:46413831-46413850	None:intergenic	45.0%
	TGTGGCATGGTATAGACATG+GGG	-	chr6_4:46413951-46413970	Msa0989480:CDS	45.0%
!	GCCAATGACAGCAACCATTT+TGG	+	chr6_4:46414056-46414075	None:intergenic	45.0%
	TCTGCATTGCTAAACTCCAC+CGG	-	chr6_4:46414172-46414191	Msa0989480:five_prime_UTR	45.0%
	TTGGTGGAATCTGCTAATGC+CGG	+	chr6_4:46414194-46414213	None:intergenic	45.0%
	GCTAGAACATGCATTGCATG+GGG	+	chr6_4:46414299-46414318	None:intergenic	45.0%
	GTTCTAGCAACTCTCTTTGC+AGG	-	chr6_4:46414311-46414330	Msa0989480:five_prime_UTR	45.0%
	CGGTTGATCTTTCTCCTTCT+CGG	-	chr6_4:46414366-46414385	Msa0989480:five_prime_UTR	45.0%
	TGTGCATGATTCATCCGAGA+AGG	+	chr6_4:46414383-46414402	None:intergenic	45.0%
	CGATTGAAGGATGTTGTTGC+TGG	-	chr6_4:46413038-46413057	Msa0989480:intron	45.0%
	TTCCTGCAAATACCAACGGA+AGG	-	chr6_4:46413316-46413335	Msa0989480:CDS	45.0%
!	TCTCATAAGATGGGAGGTGT+GGG	+	chr6_4:46413830-46413849	None:intergenic	45.0%
	ATCTCATAAGATGGGAGGTG+TGG	+	chr6_4:46413831-46413850	None:intergenic	45.0%
	TGTGGCATGGTATAGACATG+GGG	-	chr6_4:46413951-46413970	Msa0989480:CDS	45.0%
!	GCCAATGACAGCAACCATTT+TGG	+	chr6_4:46414056-46414075	None:intergenic	45.0%
	TCTGCATTGCTAAACTCCAC+CGG	-	chr6_4:46414172-46414191	Msa0989480:five_prime_UTR	45.0%
	TTGGTGGAATCTGCTAATGC+CGG	+	chr6_4:46414194-46414213	None:intergenic	45.0%
	GCTAGAACATGCATTGCATG+GGG	+	chr6_4:46414299-46414318	None:intergenic	45.0%
	GTTCTAGCAACTCTCTTTGC+AGG	-	chr6_4:46414311-46414330	Msa0989480:five_prime_UTR	45.0%
	CGGTTGATCTTTCTCCTTCT+CGG	-	chr6_4:46414366-46414385	Msa0989480:five_prime_UTR	45.0%
	TGTGCATGATTCATCCGAGA+AGG	+	chr6_4:46414383-46414402	None:intergenic	45.0%
	GTCCTTCCGTTGGTATTTGC+AGG	+	chr6_4:46413321-46413340	None:intergenic	50.0%
	AGTCAAGTTCGTCCTTCCGT+TGG	+	chr6_4:46413331-46413350	None:intergenic	50.0%
	TGCACAGCCATGACAATGCA+TGG	+	chr6_4:46413645-46413664	None:intergenic	50.0%
	CTTTATGGTGCAGAGGCTGT+AGG	-	chr6_4:46414407-46414426	Msa0989480:five_prime_UTR	50.0%
	GTCCTTCCGTTGGTATTTGC+AGG	+	chr6_4:46413321-46413340	None:intergenic	50.0%
	AGTCAAGTTCGTCCTTCCGT+TGG	+	chr6_4:46413331-46413350	None:intergenic	50.0%
	TGCACAGCCATGACAATGCA+TGG	+	chr6_4:46413645-46413664	None:intergenic	50.0%
	CTTTATGGTGCAGAGGCTGT+AGG	-	chr6_4:46414407-46414426	Msa0989480:five_prime_UTR	50.0%
	GTGGAATCTGCTAATGCCGG+TGG	+	chr6_4:46414191-46414210	None:intergenic	55.0%
	GTGGAATCTGCTAATGCCGG+TGG	+	chr6_4:46414191-46414210	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	46412521	46414492	46412521	ID=Msa0989480;Name=Msa0989480
chr6_4	mRNA	46412521	46414492	46412521	ID=Msa0989480-mRNA-1;Parent=Msa0989480;Name=Msa0989480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=376\|1\|1\|1\|1\|1\|3\|342\|133
chr6_4	exon	46412521	46412990	46412521	ID=Msa0989480-mRNA-1:exon:10429;Parent=Msa0989480-mRNA-1
chr6_4	exon	46413315	46413390	46413315	ID=Msa0989480-mRNA-1:exon:10428;Parent=Msa0989480-mRNA-1
chr6_4	exon	46413919	46414492	46413919	ID=Msa0989480-mRNA-1:exon:10427;Parent=Msa0989480-mRNA-1
chr6_4	five_prime_UTR	46414117	46414492	46414117	ID=Msa0989480-mRNA-1:five_prime_utr;Parent=Msa0989480-mRNA-1
chr6_4	CDS	46413919	46414116	46413919	ID=Msa0989480-mRNA-1:cds;Parent=Msa0989480-mRNA-1
chr6_4	CDS	46413315	46413390	46413315	ID=Msa0989480-mRNA-1:cds;Parent=Msa0989480-mRNA-1
chr6_4	CDS	46412863	46412990	46412863	ID=Msa0989480-mRNA-1:cds;Parent=Msa0989480-mRNA-1
chr6_4	three_prime_UTR	46412521	46412862	46412521	ID=Msa0989480-mRNA-1:three_prime_utr;Parent=Msa0989480-mRNA-1

Gene Sequence

>Msa0989480

ATGGGGAAACTTGGTAAAATGTTGGATACATTCTGTTTTTCTTCTGGTTCAAACTCATGCTTCTGTCTAAATTCCATAAATTTTGATAATGAGTTTGAGAGTAAGCCCTTGATTGCAAGTGACAGAGATGATCAAAAACTACGATTGAAGGATGTTGTTGCTGGAAAGCAAACATTGGCTTTTCAATTGAAACCTAAGATAGTAATATTGAAGGTATCCATGCATTGTCATGGCTGTGCAAGAAAAGTTGAGAAACATATATCAAAGCTTGAAGGAGTGAGCTCATATAAGGTAGATCTAGACACCAAAATGGTTGCTGTCATTGGCGATATTCTTCCATTCGAAGTGTTGCAAAGTGTATCAAAGGTTAAAAATGCACAGTTTTGGAATTCCACCTGCTAA

Protein sequence

>Msa0989480

MGKLGKMLDTFCFSSGSNSCFCLNSINFDNEFESKPLIASDRDDQKLRLKDVVAGKQTLAFQLKPKIVILKVSMHCHGCARKVEKHISKLEGVSSYKVDLDTKMVAVIGDILPFEVLQSVSKVKNAQFWNSTC*