AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0970270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970270 MtrunA17_Chr6g0449061 95.935 492 13 1 2 493 3 487 0.0 957
Msa0970270 MtrunA17_Chr7g0251321 71.501 393 93 1 96 488 1 374 0.0 588
Msa0970270 MtrunA17_Chr7g0251331 53.390 472 216 2 15 483 2 472 0.0 520
Msa0970270 MtrunA17_Chr1g0208821 48.898 499 243 3 1 491 1 495 1.18e-170 490
Msa0970270 MtrunA17_Chr1g0208881 50.740 473 232 1 16 488 5 476 2.48e-169 486
Msa0970270 MtrunA17_Chr1g0208891 50.972 463 226 1 19 481 7 468 7.64e-165 474
Msa0970270 MtrunA17_Chr6g0483361 49.028 463 233 2 21 481 10 471 5.23e-155 449
Msa0970270 MtrunA17_Chr6g0483381 48.954 478 239 4 13 488 5 479 4.47e-154 447
Msa0970270 MtrunA17_Chr6g0477961 48.894 452 227 3 39 488 30 479 1.79e-144 423
Msa0970270 MtrunA17_Chr1g0208791 44.650 486 251 4 13 483 17 499 1.62e-134 398
Msa0970270 MtrunA17_Chr6g0483341 45.045 444 244 0 36 479 41 484 3.63e-130 387
Msa0970270 MtrunA17_Chr8g0392601 43.267 453 256 1 27 479 3 454 1.19e-128 382
Msa0970270 MtrunA17_Chr6g0483351 50.529 378 185 1 96 471 1 378 1.55e-128 380
Msa0970270 MtrunA17_Chr6g0483331 42.793 444 254 0 36 479 12 455 9.92e-120 359
Msa0970270 MtrunA17_Chr2g0322671 36.542 509 302 5 1 491 1 506 4.39e-111 338
Msa0970270 MtrunA17_Chr4g0024501 35.521 518 305 4 1 490 1 517 9.37e-109 332
Msa0970270 MtrunA17_Chr2g0317131 37.500 480 290 4 13 484 12 489 7.05e-101 311
Msa0970270 MtrunA17_Chr6g0483161 39.474 380 211 1 94 473 1 361 7.17e-101 307
Msa0970270 MtrunA17_Chr2g0317151 37.716 464 286 2 7 470 6 466 4.53e-97 301
Msa0970270 MtrunA17_Chr2g0288281 39.583 384 232 0 96 479 1 384 3.89e-95 293
Msa0970270 MtrunA17_Chr8g0368001 34.350 492 316 4 3 489 16 505 5.61e-89 281
Msa0970270 MtrunA17_Chr2g0317161 36.842 437 273 3 35 470 30 464 1.31e-87 277
Msa0970270 MtrunA17_Chr2g0317171 35.076 459 290 3 19 470 13 470 2.94e-85 271
Msa0970270 MtrunA17_Chr5g0412771 35.874 446 284 2 34 479 54 497 3.15e-85 271
Msa0970270 MtrunA17_Chr5g0412541 33.469 493 312 6 8 490 3 489 1.90e-84 269
Msa0970270 MtrunA17_Chr1g0203791 32.869 502 316 8 2 491 27 519 5.32e-81 261
Msa0970270 MtrunA17_Chr2g0317221 37.302 378 237 0 93 470 7 384 1.68e-80 256
Msa0970270 MtrunA17_Chr5g0397991 32.298 483 311 7 2 477 32 505 1.37e-78 255
Msa0970270 MtrunA17_Chr7g0254521 32.996 494 314 5 4 487 2 488 1.40e-78 253
Msa0970270 MtrunA17_Chr5g0428251 31.102 463 312 4 19 477 36 495 1.12e-76 250
Msa0970270 MtrunA17_Chr6g0473701 32.500 480 313 6 3 477 95 568 1.14e-76 252
Msa0970270 MtrunA17_Chr6g0467321 31.976 491 310 6 18 488 21 507 2.21e-76 249
Msa0970270 MtrunA17_Chr3g0132531 34.221 488 314 5 7 492 20 502 1.28e-75 246
Msa0970270 MtrunA17_Chr1g0154441 35.492 386 244 2 96 479 1 383 9.50e-74 238
Msa0970270 MtrunA17_Chr7g0254511 31.902 489 319 6 8 489 3 484 1.36e-73 240
Msa0970270 MtrunA17_Chr7g0254531 36.719 384 242 1 96 479 1 383 1.66e-73 238
Msa0970270 MtrunA17_Chr3g0140931 30.297 472 318 5 11 477 26 491 3.66e-73 241
Msa0970270 MtrunA17_Chr5g0442331 31.753 485 311 3 14 479 5 488 8.74e-73 239
Msa0970270 MtrunA17_Chr8g0389801 31.320 447 300 4 32 476 19 460 1.10e-67 224
Msa0970270 MtrunA17_Chr5g0412571 35.825 388 239 4 94 476 38 420 1.06e-65 218
Msa0970270 MtrunA17_Chr4g0013031 30.041 486 326 7 1 477 28 508 1.17e-64 218
Msa0970270 MtrunA17_Chr1g0202761 30.837 454 311 2 26 479 33 483 6.55e-64 215
Msa0970270 MtrunA17_Chr6g0468531 30.591 474 317 6 13 479 3 471 5.37e-62 210
Msa0970270 MtrunA17_Chr2g0295631 29.895 475 316 3 28 486 12 485 1.05e-61 209
Msa0970270 MtrunA17_Chr6g0468521 28.512 477 322 7 13 479 3 470 4.79e-60 204
Msa0970270 MtrunA17_Chr6g0460541 33.419 389 251 3 94 479 3 386 3.47e-59 200
Msa0970270 MtrunA17_Chr7g0254501 34.713 314 197 3 181 489 2 312 2.97e-53 182
Msa0970270 MtrunA17_Chr6g0483264 43.128 211 120 0 277 487 2 212 3.21e-53 179
Msa0970270 MtrunA17_Chr7g0248051 31.034 464 317 2 20 483 54 514 2.33e-51 182
Msa0970270 MtrunA17_Chr6g0468511 30.105 475 317 7 13 479 3 470 2.59e-50 178
Msa0970270 MtrunA17_Chr6g0483241 43.889 180 101 0 94 273 1 180 1.20e-46 160
Msa0970270 MtrunA17_Chr3g0132541 27.983 461 271 6 31 487 32 435 1.92e-46 167
Msa0970270 MtrunA17_Chr5g0440661 29.032 372 191 9 96 462 1 304 1.62e-36 137
Msa0970270 MtrunA17_Chr6g0487091 28.000 325 201 7 171 476 79 389 2.49e-34 133
Msa0970270 MtrunA17_Chr6g0483261 42.424 165 95 0 323 487 6 170 8.13e-34 125
Msa0970270 MtrunA17_Chr8g0364761 30.000 270 187 2 37 305 54 322 1.84e-33 129
Msa0970270 MtrunA17_Chr6g0483221 41.611 149 87 0 323 471 6 154 4.57e-33 123
Msa0970270 MtrunA17_Chr8g0364751 41.667 168 98 0 320 487 16 183 5.27e-32 121
Msa0970270 MtrunA17_Chr5g0398571 31.754 211 144 0 275 485 85 295 9.36e-29 115
Msa0970270 MtrunA17_Chr6g0460521 35.749 207 133 0 273 479 1 207 1.65e-28 112
Msa0970270 MtrunA17_Chr6g0460531 27.106 273 177 7 7 273 3 259 7.21e-18 83.6
Msa0970270 MtrunA17_Chr5g0442311 25.824 182 127 2 96 273 1 178 1.43e-15 75.1
Msa0970270 MtrunA17_Chr6g0483281 49.296 71 36 0 207 277 5 75 1.61e-14 68.9
Msa0970270 MtrunA17_Chr6g0483291 45.946 74 36 1 26 99 4 73 7.93e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0970270 AT1G66760.2 49.072 485 243 2 7 491 1 481 9.62e-177 505
Msa0970270 AT1G64820.1 50.520 481 235 2 10 488 2 481 9.73e-174 498
Msa0970270 AT1G66760.1 49.247 465 232 2 7 471 1 461 2.08e-169 486
Msa0970270 AT1G71140.1 51.535 456 220 1 27 482 16 470 2.46e-168 484
Msa0970270 AT1G66780.1 49.896 481 238 2 1 481 1 478 4.42e-165 476
Msa0970270 AT2G04100.1 49.782 458 229 1 33 490 26 482 1.19e-158 459
Msa0970270 AT2G04090.1 49.669 453 227 1 33 485 26 477 3.35e-158 458
Msa0970270 AT1G15170.1 47.182 479 249 2 1 479 1 475 7.30e-155 449
Msa0970270 AT1G15150.1 47.439 449 235 1 31 479 25 472 1.54e-154 449
Msa0970270 AT2G04040.1 48.000 450 233 1 32 481 22 470 1.74e-154 448
Msa0970270 AT2G04080.1 45.397 478 256 2 14 491 4 476 4.15e-154 447
Msa0970270 AT2G04050.1 47.210 466 239 2 20 485 16 474 5.46e-153 444
Msa0970270 AT5G52450.1 47.934 484 238 3 1 483 1 471 8.88e-153 444
Msa0970270 AT2G04070.1 48.090 445 230 1 37 481 27 470 1.41e-152 444
Msa0970270 AT2G04100.2 50.114 439 218 1 33 471 26 463 2.87e-152 442
Msa0970270 AT1G15160.1 45.094 479 256 3 1 479 1 472 5.17e-152 442
Msa0970270 AT2G04080.2 44.978 458 251 1 14 471 4 460 5.39e-148 432
Msa0970270 AT1G73700.1 48.548 482 240 3 7 488 1 474 8.41e-144 421
Msa0970270 AT2G34360.1 47.609 460 231 5 26 483 15 466 2.03e-143 420
Msa0970270 AT1G15180.1 45.625 480 256 3 1 479 1 476 9.07e-140 411
Msa0970270 AT1G66760.4 48.363 397 201 2 7 403 1 393 3.30e-138 404
Msa0970270 AT1G15150.2 47.875 353 184 0 127 479 4 356 4.24e-124 367
Msa0970270 AT1G66760.3 49.850 333 167 0 139 471 1 333 3.25e-123 363
Msa0970270 AT1G15170.2 48.442 353 182 0 127 479 4 356 4.74e-123 364
Msa0970270 AT2G34360.2 42.702 459 213 3 26 483 15 424 4.69e-122 364
Msa0970270 AT3G21690.1 36.515 482 294 2 9 490 35 504 5.71e-101 312
Msa0970270 AT3G23550.1 37.879 462 274 4 18 470 6 463 6.96e-99 306
Msa0970270 AT1G61890.1 36.226 461 280 5 37 491 47 499 6.34e-97 302
Msa0970270 AT3G23560.1 36.887 469 282 5 12 470 7 471 5.75e-95 296
Msa0970270 AT1G61890.2 36.508 441 267 4 37 471 47 480 1.03e-93 293
Msa0970270 AT1G11670.1 34.664 476 300 5 19 490 33 501 9.31e-93 291
Msa0970270 AT5G38030.1 36.026 458 291 2 34 491 42 497 4.29e-90 284
Msa0970270 AT3G26590.1 34.091 484 305 4 8 479 4 485 1.08e-88 280
Msa0970270 AT1G12950.1 36.607 448 282 2 34 481 64 509 1.76e-88 281
Msa0970270 AT4G21910.2 36.830 448 271 5 37 479 57 497 2.80e-88 280
Msa0970270 AT4G21910.4 36.830 448 271 5 37 479 57 497 2.80e-88 280
Msa0970270 AT4G21910.3 36.018 447 276 4 37 479 55 495 6.79e-88 278
Msa0970270 AT4G21910.1 36.018 447 276 4 37 479 55 495 6.79e-88 278
Msa0970270 AT4G21903.1 38.517 418 245 5 67 479 83 493 1.23e-87 278
Msa0970270 AT4G21903.3 38.660 388 230 2 96 479 1 384 4.40e-86 270
Msa0970270 AT1G15180.2 46.429 280 150 0 124 403 1 280 8.40e-86 270
Msa0970270 AT4G21903.2 37.413 433 255 6 67 490 83 508 2.61e-84 270
Msa0970270 AT3G59030.1 34.305 446 290 3 35 479 49 492 9.66e-83 265
Msa0970270 AT1G61890.3 35.437 412 253 4 37 442 47 451 2.32e-81 261
Msa0970270 AT5G65380.1 35.073 479 299 6 6 479 7 478 2.62e-81 261
Msa0970270 AT1G23300.1 35.332 467 292 6 24 485 32 493 2.69e-80 259
Msa0970270 AT1G47530.1 34.172 477 308 4 7 479 1 475 1.85e-79 256
Msa0970270 AT3G26590.2 37.500 384 239 1 96 479 1 383 5.28e-79 252
Msa0970270 AT4G29140.1 32.854 487 314 5 3 487 30 505 1.29e-77 253
Msa0970270 AT5G44050.1 32.495 477 318 4 9 484 13 486 1.13e-76 249
Msa0970270 AT5G52050.1 32.587 491 304 9 1 476 1 479 4.07e-76 248
Msa0970270 AT1G33110.1 33.051 472 312 3 10 479 7 476 4.10e-76 248
Msa0970270 AT4G23030.1 33.265 490 313 5 11 489 1 487 1.09e-75 247
Msa0970270 AT3G23560.2 36.318 402 242 5 12 403 7 404 1.17e-75 244
Msa0970270 AT5G10420.1 33.475 472 309 4 9 479 12 479 6.45e-75 244
Msa0970270 AT1G33100.1 33.617 470 309 3 10 479 7 473 1.71e-74 243
Msa0970270 AT1G33090.1 33.962 477 301 6 10 479 7 476 1.12e-72 238
Msa0970270 AT1G71870.1 32.218 478 300 7 18 475 6 479 2.98e-71 235
Msa0970270 AT1G33080.1 32.444 487 321 4 10 490 7 491 4.36e-70 232
Msa0970270 AT1G47530.2 35.677 384 246 1 96 479 1 383 7.87e-70 228
Msa0970270 AT1G33080.2 32.836 469 311 3 10 476 7 473 2.09e-69 230
Msa0970270 AT2G38510.1 28.894 443 313 2 36 477 5 446 2.63e-69 229
Msa0970270 AT5G19700.1 31.749 463 301 6 36 489 35 491 7.89e-69 229
Msa0970270 AT4G00350.1 34.375 448 281 7 37 479 88 527 1.10e-68 229
Msa0970270 AT1G58340.1 29.718 461 319 3 35 493 56 513 1.64e-66 223
Msa0970270 AT4G22790.1 31.799 478 309 5 3 476 6 470 2.78e-63 214
Msa0970270 AT5G49130.1 29.979 467 312 4 35 487 24 489 5.69e-62 211
Msa0970270 AT5G17700.2 30.169 474 321 4 10 479 7 474 1.47e-59 204
Msa0970270 AT5G17700.1 30.169 474 321 4 10 479 7 474 1.47e-59 204
Msa0970270 AT4G25640.1 31.818 462 312 2 18 479 15 473 3.69e-59 202
Msa0970270 AT4G25640.2 31.818 462 312 2 18 479 15 473 5.87e-59 203
Msa0970270 AT3G59030.2 32.703 370 246 3 35 403 49 416 3.90e-58 198
Msa0970270 AT3G03620.2 29.536 474 327 5 19 488 16 486 5.35e-57 197
Msa0970270 AT3G03620.1 29.536 474 327 5 19 488 16 486 5.35e-57 197
Msa0970270 AT1G33110.2 31.830 399 264 5 10 404 7 401 4.89e-52 182
Msa0970270 AT4G25640.3 31.579 418 283 2 18 435 15 429 1.42e-51 182
Msa0970270 AT2G04066.1 48.889 135 65 1 357 491 41 171 2.98e-37 135
Msa0970270 AT5G17700.3 27.387 398 279 4 10 403 7 398 2.31e-36 139

Find 107 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCCTATTTGTTGGATTC+TGG 0.144927 6_4:-1751782 Msa0970270:CDS
ACTAACATCTAGACATATTT+TGG 0.171532 6_4:-1749538 Msa0970270:three_prime_UTR
ATTCCTATTGGTTTGTTATT+AGG 0.201827 6_4:-1749982 Msa0970270:CDS
TAGCTATTGGAATTTCTTAT+TGG 0.229128 6_4:-1751723 Msa0970270:CDS
TTCCTTCTGGACTCATGTTT+TGG 0.233890 6_4:-1751585 Msa0970270:intron
TGCAAATATGCTATTCCTTC+TGG 0.235933 6_4:-1751598 Msa0970270:CDS
GTTAGAGTGGTTGTGATTAT+TGG 0.240480 6_4:-1750703 Msa0970270:CDS
ACTCGTGTTTCAAATGAATT+AGG 0.240783 6_4:-1750757 Msa0970270:CDS
TACCTCATTCCCGCTCTATT+TGG 0.243762 6_4:-1751898 Msa0970270:CDS
GTTAGTGCTGATAGTCTAAT+TGG 0.244051 6_4:-1750553 Msa0970270:CDS
TGTGAATTACATTGCGGATA+TGG 0.251319 6_4:-1750596 Msa0970270:CDS
AGTCTAATTGGAGCTCTTTC+AGG 0.262673 6_4:-1750541 Msa0970270:intron
ACAGCTCCCTTAGCTGTCTT+TGG 0.262861 6_4:+1750724 None:intergenic
AATATCCACACAAGAGATAT+TGG 0.269827 6_4:+1751991 None:intergenic
ATTGGAGCTGCTTTAGCTAT+TGG 0.308771 6_4:-1751736 Msa0970270:CDS
CTTATTGGTTGAATGTGATA+TGG 0.309579 6_4:-1751708 Msa0970270:CDS
GGTATACTTGTTTCATTCTC+TGG 0.313561 6_4:-1753230 Msa0970270:CDS
GGTTGAATGTGATATGGCTT+TGG 0.339522 6_4:-1751702 Msa0970270:CDS
CATGTGCTCTCAAAATTTGT+AGG 0.351508 6_4:+1749465 None:intergenic
TATATTGTGGGAATTCCTAT+TGG 0.359116 6_4:-1749994 Msa0970270:CDS
AAAACCAGAATCCAACAAAT+AGG 0.359230 6_4:+1751778 None:intergenic
TCAAGTGGTTTCTCTTATGA+TGG 0.367964 6_4:-1753264 Msa0970270:CDS
GTTGAAGAAGGTGAGTTTCA+TGG 0.370676 6_4:-1753327 Msa0970270:CDS
GTTGAATGTGATATGGCTTT+GGG 0.371323 6_4:-1751701 Msa0970270:CDS
ACCTTTGGTGCAGAAGAGTA+TGG 0.375100 6_4:-1752069 Msa0970270:CDS
TTGTGGATGGGAACTCTATC+AGG 0.380221 6_4:-1749931 Msa0970270:CDS
TTCTTTATACAGCTGTTGTA+TGG 0.384253 6_4:-1749590 Msa0970270:three_prime_UTR
AAACCTCGGTTCTTTCTGTC+TGG 0.401635 6_4:-1751404 Msa0970270:intron
ATGAGTAGAAAACACAATCT+TGG 0.406242 6_4:+1751645 None:intergenic
GAGGTTTCAAGTTGAGGATT+AGG 0.426770 6_4:+1751420 None:intergenic
CGAGCTACATGAGACATTCC+AGG 0.426985 6_4:+1751934 None:intergenic
AGGAGGTGGATTTCAAGAAA+TGG 0.431562 6_4:-1750043 Msa0970270:CDS
GAAAGATCATTCCCTGAGTC+TGG 0.432954 6_4:+1751842 None:intergenic
AAACCTAATAACAAACCAAT+AGG 0.436422 6_4:+1749979 None:intergenic
CATCTAAAATTAAATGCAAA+GGG 0.436535 6_4:-1749955 Msa0970270:CDS
TTGTAACTGCATTAACTGAT+TGG 0.453816 6_4:-1749879 Msa0970270:CDS
GGAGGTGGATTTCAAGAAAT+GGG 0.458931 6_4:-1750042 Msa0970270:CDS
GCATTACAGTTGGGAATGGC+TGG 0.459980 6_4:-1752117 Msa0970270:intron
CATGAGACATTCCAGGGTCT+TGG 0.462706 6_4:+1751941 None:intergenic
ACACTATGTGGACAAACCTT+TGG 0.467875 6_4:-1752084 Msa0970270:CDS
CCTTGGAGCTTACTATATTG+TGG 0.467917 6_4:-1750007 Msa0970270:CDS
ATATCCACACAAGAGATATT+GGG 0.469336 6_4:+1751992 None:intergenic
GCAGAAGCTCCAATTGCATA+TGG 0.475350 6_4:+1750892 None:intergenic
ACAATGAAATTAATCAAGAT+AGG 0.475752 6_4:-1749646 Msa0970270:three_prime_UTR
CTTGGAGCTTACTATATTGT+GGG 0.480379 6_4:-1750006 Msa0970270:CDS
TCCATACTCTTCTGCACCAA+AGG 0.486695 6_4:+1752068 None:intergenic
TCATCTAAAATTAAATGCAA+AGG 0.487864 6_4:-1749956 Msa0970270:CDS
AAATGCAAAGGGATTGTGGA+TGG 0.492772 6_4:-1749944 Msa0970270:CDS
GCAGAAGAGTATGGAAAACT+TGG 0.496330 6_4:-1752060 Msa0970270:CDS
GAGTTTCATGGCAGCTCCAA+TGG 0.497826 6_4:-1753315 Msa0970270:CDS
GCAGGGGTTGCTAGAGGAGG+TGG 0.498862 6_4:-1750057 Msa0970270:intron
GATTCGCTATTTCCAGACTC+AGG 0.500456 6_4:-1751854 Msa0970270:CDS
AATTAAATGCAAAGGGATTG+TGG 0.500586 6_4:-1749948 Msa0970270:CDS
AGTGGTTTCTCTTATGATGG+TGG 0.502914 6_4:-1753261 Msa0970270:CDS
GTTGGGAATGGCTGGTGCAT+TGG 0.502939 6_4:-1752109 Msa0970270:CDS
ATTAACTGATTGGCAGAAAG+AGG 0.504417 6_4:-1749869 Msa0970270:intron
GTTTCAAATGAATTAGGAGC+AGG 0.508966 6_4:-1750751 Msa0970270:CDS
AGAACCGAGGTTTCAAGTTG+AGG 0.511415 6_4:+1751414 None:intergenic
TTCACAATATCTTCTTCAAG+TGG 0.512019 6_4:-1753279 Msa0970270:CDS
GTTTCCCAATATCTCTTGTG+TGG 0.512963 6_4:-1751996 Msa0970270:CDS
AAACTCTAGAGAGATGAGTA+AGG 0.519910 6_4:-1753432 Msa0970270:CDS
GTTTGCATTACAGTTGGGAA+TGG 0.523549 6_4:-1752121 Msa0970270:intron
TCATCACTCTTTCTTAGCAA+TGG 0.528379 6_4:+1753398 None:intergenic
CTAAAATATTTCTAAAGCAA+AGG 0.529386 6_4:+1750647 None:intergenic
CTTATGATGGTGGGACATCT+CGG 0.535495 6_4:-1753251 Msa0970270:CDS
ATTCATTCAAGAGTTGAAGA+AGG 0.535676 6_4:-1753339 Msa0970270:CDS
GAAACTGTTACAGCTACCAT+TGG 0.542723 6_4:+1753299 None:intergenic
AACTAACAACACATTGGTGG+TGG 0.546469 6_4:-1749677 Msa0970270:CDS
GGAAATCCAAAGACAGCTAA+GGG 0.549690 6_4:-1750730 Msa0970270:CDS
AGGAAATCCAAAGACAGCTA+AGG 0.552623 6_4:-1750731 Msa0970270:CDS
GTGGTTTCTCTTATGATGGT+GGG 0.552777 6_4:-1753260 Msa0970270:CDS
CATTGCAGGCAACAAAAGCA+AGG 0.553104 6_4:-1749726 Msa0970270:intron
CAACTCTTCCATCACTTCCA+TGG 0.554813 6_4:+1753375 None:intergenic
ATAGCATATTTGCAGAACTC+TGG 0.558784 6_4:+1751607 None:intergenic
TCAGGGAATGATCTTTCCCA+TGG 0.560267 6_4:-1751836 Msa0970270:CDS
TAGAGAGATGAGTAAGGAGG+TGG 0.565909 6_4:-1753426 Msa0970270:CDS
AGCCAAATAGAGCGGGAATG+AGG 0.570337 6_4:+1751896 None:intergenic
TACCAAAACATGAGTCCAGA+AGG 0.573401 6_4:+1751583 None:intergenic
ATTCGCTATTTCCAGACTCA+GGG 0.576880 6_4:-1751853 Msa0970270:CDS
CATATTTGCAGAACTCTGGT+AGG 0.578691 6_4:+1751611 None:intergenic
AGCTAAGGGAGCTGTTAGAG+TGG 0.582031 6_4:-1750716 Msa0970270:CDS
TTGAGGATTAGGCAAAAGCC+CGG 0.583309 6_4:+1751431 None:intergenic
TTCAGCAAAAGACATGGCAA+TGG 0.584361 6_4:+1753202 None:intergenic
AGTGCATAGCCAAATAGAGC+GGG 0.584898 6_4:+1751889 None:intergenic
AGTGATGACCATGGAAGTGA+TGG 0.586777 6_4:-1753383 Msa0970270:CDS
CTAACAGAAACACAAAGAAG+AGG 0.588544 6_4:+1750571 None:intergenic
AATGCAAAGGGATTGTGGAT+GGG 0.591123 6_4:-1749943 Msa0970270:CDS
AAGTTGGGATTAGGACACAT+TGG 0.599322 6_4:-1751754 Msa0970270:CDS
ATGCAATTGGAGCTTCTGCA+AGG 0.601986 6_4:-1750888 Msa0970270:intron
AGGCAACAAAAGCAAGGGAG+AGG 0.607625 6_4:-1749720 Msa0970270:CDS
AATTAAAATAAGAATCTCAA+AGG 0.607660 6_4:+1751455 None:intergenic
TAATCCTCAACTTGAAACCT+CGG 0.610928 6_4:-1751418 Msa0970270:CDS
GAGCTACATGAGACATTCCA+GGG 0.620444 6_4:+1751935 None:intergenic
CCACAATATAGTAAGCTCCA+AGG 0.626718 6_4:+1750007 None:intergenic
TGAACTGCAGGGGTTGCTAG+AGG 0.635927 6_4:-1750063 Msa0970270:intron
ACTGCAGGGGTTGCTAGAGG+AGG 0.647610 6_4:-1750060 Msa0970270:intron
GAGGTGGATTTCAAGAAATG+GGG 0.650274 6_4:-1750041 Msa0970270:CDS
CTCTAGAGAGATGAGTAAGG+AGG 0.653478 6_4:-1753429 Msa0970270:CDS
AGTAACTTCAGCAAAAGACA+TGG 0.654565 6_4:+1753196 None:intergenic
ATTGCAGGCAACAAAAGCAA+GGG 0.658902 6_4:-1749725 Msa0970270:intron
GGTGCATTGGAAACACTATG+TGG 0.664884 6_4:-1752096 Msa0970270:CDS
TGTGATTATTGGAATTGCTG+AGG 0.666119 6_4:-1750692 Msa0970270:CDS
AGGTGGATTTCAAGAAATGG+GGG 0.668457 6_4:-1750040 Msa0970270:CDS
ACAAGTTGTGAATTACATTG+CGG 0.676878 6_4:-1750602 Msa0970270:CDS
CTAAGAAAGAGTGATGACCA+TGG 0.683327 6_4:-1753392 Msa0970270:CDS
AAGTGCATAGCCAAATAGAG+CGG 0.722956 6_4:+1751888 None:intergenic
TCACCAGACAGAAAGAACCG+AGG 0.782249 6_4:+1751401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTTCATAGATTAATTT+AGG + chr6_4:1750112-1750131 None:intergenic 10.0%
!!! AAAATACTAATCAAACATTT+TGG + chr6_4:1749876-1749895 None:intergenic 15.0%
!! CTATAAAATCAATTAAATGA+TGG + chr6_4:1749943-1749962 None:intergenic 15.0%
!! GACAAAAAATAAATCAAAAT+TGG + chr6_4:1750210-1750229 None:intergenic 15.0%
!! AGTTAGATATTCATTAAATA+AGG + chr6_4:1750614-1750633 None:intergenic 15.0%
!! AATTAAAATAAGAATCTCAA+AGG + chr6_4:1751426-1751445 None:intergenic 15.0%
!! AAAATCAGAAGAAGAAAAAT+AGG + chr6_4:1749833-1749852 None:intergenic 20.0%
!!! TTTCTTCTTCTGATTTTTTT+TGG - chr6_4:1749836-1749855 Msa0970270:intron 20.0%
!!! ATTTTGTAACAGTAATAAAC+AGG - chr6_4:1749891-1749910 Msa0970270:CDS 20.0%
!!! ATCTATGAAATTTTCATACT+CGG - chr6_4:1750118-1750137 Msa0970270:intron 20.0%
!! TCCATAAATCATTGTATTAT+AGG - chr6_4:1750151-1750170 Msa0970270:intron 20.0%
!! CCATAAATCATTGTATTATA+GGG - chr6_4:1750152-1750171 Msa0970270:intron 20.0%
!!! AATTCTCTAAGAAAATTATG+AGG - chr6_4:1750241-1750260 Msa0970270:intron 20.0%
!!! ATTCTCTAAGAAAATTATGA+GGG - chr6_4:1750242-1750261 Msa0970270:intron 20.0%
!! TGTACAAATACAGAAAATTT+AGG + chr6_4:1750423-1750442 None:intergenic 20.0%
!!! CACTCTTTTATTTTTTTTCA+GGG - chr6_4:1750524-1750543 Msa0970270:intron 20.0%
!! TGCTTCATAGTATAATATAA+TGG - chr6_4:1750712-1750731 Msa0970270:CDS 20.0%
!!! AGTTCTTAAAAATGTTTTGT+AGG - chr6_4:1751679-1751698 Msa0970270:CDS 20.0%
!!! GTTCTTAAAAATGTTTTGTA+GGG - chr6_4:1751680-1751699 Msa0970270:CDS 20.0%
!! ATTGAGTTCCTTAAATTAAA+AGG + chr6_4:1751856-1751875 None:intergenic 20.0%
!!! TTTAATTTAAGGAACTCAAT+TGG - chr6_4:1751856-1751875 Msa0970270:CDS 20.0%
!!! CTAAAATATTTCTAAAGCAA+AGG + chr6_4:1752234-1752253 None:intergenic 20.0%
!!! CTTTGCTTTAGAAATATTTT+AGG - chr6_4:1752232-1752251 Msa0970270:intron 20.0%
!!! TGTTTTGTCAATATAACAAT+AGG - chr6_4:1752530-1752549 Msa0970270:intron 20.0%
!!! GTTTTGTCAATATAACAATA+GGG - chr6_4:1752531-1752550 Msa0970270:intron 20.0%
!! CATAGTATGTAAATAAAACT+TGG - chr6_4:1752755-1752774 Msa0970270:intron 20.0%
!!! TCATCTAAAATTAAATGCAA+AGG - chr6_4:1752922-1752941 Msa0970270:intron 20.0%
!!! CATCTAAAATTAAATGCAAA+GGG - chr6_4:1752923-1752942 Msa0970270:intron 20.0%
!! AATAAAAACTAACAACACAT+TGG - chr6_4:1753195-1753214 Msa0970270:CDS 20.0%
!! ACAATGAAATTAATCAAGAT+AGG - chr6_4:1753232-1753251 Msa0970270:CDS 20.0%
! AATCCAAGAAAAACAAGAAA+AGG + chr6_4:1749748-1749767 None:intergenic 25.0%
!!! CTTCTGATTTTTTTTGGATT+AGG - chr6_4:1749842-1749861 Msa0970270:intron 25.0%
!! TCATGTGAAAGGTATATAAT+GGG - chr6_4:1749917-1749936 Msa0970270:CDS 25.0%
!! ATACTTTTATATGAGCTGAT+TGG + chr6_4:1749966-1749985 None:intergenic 25.0%
!!! AGTCATTCTCAATTTTTTCA+TGG - chr6_4:1750058-1750077 Msa0970270:intron 25.0%
!!! GTCATTCTCAATTTTTTCAT+GGG - chr6_4:1750059-1750078 Msa0970270:intron 25.0%
!! TCTATGAAATTTTCATACTC+GGG - chr6_4:1750119-1750138 Msa0970270:intron 25.0%
! CCCTATAATACAATGATTTA+TGG + chr6_4:1750155-1750174 None:intergenic 25.0%
!! TGGTCATGATATTTTCATAT+TGG + chr6_4:1750190-1750209 None:intergenic 25.0%
! TTATGAGGGTTGTATATAAA+TGG - chr6_4:1750256-1750275 Msa0970270:intron 25.0%
! AATATACAAAAGGGACATTA+AGG + chr6_4:1750503-1750522 None:intergenic 25.0%
!! AAAGAGTGCAATATACAAAA+GGG + chr6_4:1750512-1750531 None:intergenic 25.0%
!! AAAAGAGTGCAATATACAAA+AGG + chr6_4:1750513-1750532 None:intergenic 25.0%
!!! GCACTCTTTTATTTTTTTTC+AGG - chr6_4:1750523-1750542 Msa0970270:intron 25.0%
! AAGGTATAAATATTTAGACG+AGG + chr6_4:1750595-1750614 None:intergenic 25.0%
! TAGCTATTGGAATTTCTTAT+TGG - chr6_4:1751155-1751174 Msa0970270:intron 25.0%
!!! CAATATTGTGTAGTTTTGAA+TGG - chr6_4:1751396-1751415 Msa0970270:intron 25.0%
!!! GAGATTCTTATTTTAATTGC+CGG - chr6_4:1751428-1751447 Msa0970270:CDS 25.0%
!!! AGATTCTTATTTTAATTGCC+GGG - chr6_4:1751429-1751448 Msa0970270:CDS 25.0%
! TTTATAATGCATTGTCCAAA+AGG - chr6_4:1751527-1751546 Msa0970270:intron 25.0%
!! TTCGATCATATTAGCTATTT+TGG - chr6_4:1751644-1751663 Msa0970270:CDS 25.0%
!! TTTTTCATTCCATATGCAAT+TGG - chr6_4:1751977-1751996 Msa0970270:CDS 25.0%
! TATGATATGTCACATATGTA+TGG + chr6_4:1752032-1752051 None:intergenic 25.0%
! TGCTCTAATATATAGTCATT+AGG - chr6_4:1752478-1752497 Msa0970270:intron 25.0%
!! AAATTTTCATTTACTTTCCG+AGG - chr6_4:1752565-1752584 Msa0970270:intron 25.0%
!! AATTTTCATTTACTTTCCGA+GGG - chr6_4:1752566-1752585 Msa0970270:intron 25.0%
!! ATCAACAATTCACACTTTTA+CGG - chr6_4:1752613-1752632 Msa0970270:intron 25.0%
!!! TTTTAGAATGGAGATATTTG+TGG + chr6_4:1752718-1752737 None:intergenic 25.0%
!!! GACACAAAATGTTTTTAGAA+TGG + chr6_4:1752730-1752749 None:intergenic 25.0%
!!! ATTCCTATTGGTTTGTTATT+AGG - chr6_4:1752896-1752915 Msa0970270:intron 25.0%
! AAACCTAATAACAAACCAAT+AGG + chr6_4:1752902-1752921 None:intergenic 25.0%
! TTGTTGCAAAAAAACAAATG+TGG + chr6_4:1753103-1753122 None:intergenic 25.0%
!!! TTGTTTTTTTGCAACAATTG+AGG - chr6_4:1753106-1753125 Msa0970270:intron 25.0%
!!! TGTTGTTAGTTTTTATTGAC+TGG + chr6_4:1753192-1753211 None:intergenic 25.0%
!! ACTAACATCTAGACATATTT+TGG - chr6_4:1753340-1753359 Msa0970270:CDS 25.0%
ATTCATTCAAGAGTTGAAGA+AGG - chr6_4:1749539-1749558 Msa0970270:three_prime_UTR 30.0%
TTCACAATATCTTCTTCAAG+TGG - chr6_4:1749599-1749618 Msa0970270:three_prime_UTR 30.0%
CAAGAAAAACAAGAAAAGGA+AGG + chr6_4:1749744-1749763 None:intergenic 30.0%
!!! CTTCCTTTTCTTGTTTTTCT+TGG - chr6_4:1749742-1749761 Msa0970270:intron 30.0%
! CTCATGTGAAAGGTATATAA+TGG - chr6_4:1749916-1749935 Msa0970270:CDS 30.0%
AATCCTAACAAGATCAAAGA+GGG - chr6_4:1749988-1750007 Msa0970270:CDS 30.0%
GGATTTGTATACCATTCATT+TGG - chr6_4:1750392-1750411 Msa0970270:intron 30.0%
! TTTAGGATTCTCCAAATGAA+TGG + chr6_4:1750406-1750425 None:intergenic 30.0%
CATTATGACTATGTGAAATG+TGG + chr6_4:1750551-1750570 None:intergenic 30.0%
CGACATTGATACTAAAACAT+CGG + chr6_4:1750664-1750683 None:intergenic 30.0%
! TTTCTTGTTTGCATTACAGT+TGG - chr6_4:1750751-1750770 Msa0970270:CDS 30.0%
! TTCTTGTTTGCATTACAGTT+GGG - chr6_4:1750752-1750771 Msa0970270:CDS 30.0%
ATATCCACACAAGAGATATT+GGG + chr6_4:1750889-1750908 None:intergenic 30.0%
AATATCCACACAAGAGATAT+TGG + chr6_4:1750890-1750909 None:intergenic 30.0%
! TTTTGCACATTCCTATTTGT+TGG - chr6_4:1751089-1751108 Msa0970270:intron 30.0%
AAAACCAGAATCCAACAAAT+AGG + chr6_4:1751103-1751122 None:intergenic 30.0%
!!! TTGGATTCTGGTTTTTAAGT+TGG - chr6_4:1751108-1751127 Msa0970270:intron 30.0%
!!! TGGATTCTGGTTTTTAAGTT+GGG - chr6_4:1751109-1751128 Msa0970270:intron 30.0%
! CTTATTGGTTGAATGTGATA+TGG - chr6_4:1751170-1751189 Msa0970270:intron 30.0%
!!! ATCTTGGTTTTTTGACATGA+TGG + chr6_4:1751220-1751239 None:intergenic 30.0%
ATGAGTAGAAAACACAATCT+TGG + chr6_4:1751236-1751255 None:intergenic 30.0%
!!! TATTGTGTAGTTTTGAATGG+TGG - chr6_4:1751399-1751418 Msa0970270:intron 30.0%
! TAAATGCATAGTTCACCTTT+TGG + chr6_4:1751545-1751564 None:intergenic 30.0%
! TAAAAATGTTTTGTAGGGAC+TGG - chr6_4:1751685-1751704 Msa0970270:CDS 30.0%
TAGTACCCTACTATATTATG+TGG - chr6_4:1751773-1751792 Msa0970270:CDS 30.0%
!!! TGACAGCACCTTTTAATTTA+AGG - chr6_4:1751845-1751864 Msa0970270:CDS 30.0%
ACAAACAAACATCATGACAT+GGG + chr6_4:1752087-1752106 None:intergenic 30.0%
AACAAACAAACATCATGACA+TGG + chr6_4:1752088-1752107 None:intergenic 30.0%
ACTCGTGTTTCAAATGAATT+AGG - chr6_4:1752121-1752140 Msa0970270:intron 30.0%
ACAAGTTGTGAATTACATTG+CGG - chr6_4:1752276-1752295 Msa0970270:intron 30.0%
ACAACAAAATCTAAATCCCT+CGG + chr6_4:1752585-1752604 None:intergenic 30.0%
TATATATGAATGTGAACTGC+AGG - chr6_4:1752803-1752822 Msa0970270:intron 30.0%
ATATATGAATGTGAACTGCA+GGG - chr6_4:1752804-1752823 Msa0970270:intron 30.0%
TATATTGTGGGAATTCCTAT+TGG - chr6_4:1752884-1752903 Msa0970270:intron 30.0%
AATTAAATGCAAAGGGATTG+TGG - chr6_4:1752930-1752949 Msa0970270:intron 30.0%
TTGTAACTGCATTAACTGAT+TGG - chr6_4:1752999-1753018 Msa0970270:intron 30.0%
! AAAGAGAAAAGTGCACAATT+TGG + chr6_4:1753076-1753095 None:intergenic 30.0%
AAAAACTAACAACACATTGG+TGG - chr6_4:1753198-1753217 Msa0970270:CDS 30.0%
TTCTTTATACAGCTGTTGTA+TGG - chr6_4:1753288-1753307 Msa0970270:CDS 30.0%
! TGTACATGTGATTTTTGTAC+TGG - chr6_4:1753364-1753383 Msa0970270:CDS 30.0%
! AAACTCTAGAGAGATGAGTA+AGG - chr6_4:1749446-1749465 Msa0970270:three_prime_UTR 35.0%
TCATCACTCTTTCTTAGCAA+TGG + chr6_4:1749483-1749502 None:intergenic 35.0%
TCAAGTGGTTTCTCTTATGA+TGG - chr6_4:1749614-1749633 Msa0970270:three_prime_UTR 35.0%
GGTATACTTGTTTCATTCTC+TGG - chr6_4:1749648-1749667 Msa0970270:three_prime_UTR 35.0%
AGTAACTTCAGCAAAAGACA+TGG + chr6_4:1749685-1749704 None:intergenic 35.0%
! ATGTCTTTTGCTGAAGTTAC+TGG - chr6_4:1749684-1749703 Msa0970270:CDS 35.0%
AGAGAGAAGAAGAACATACA+AGG + chr6_4:1749719-1749738 None:intergenic 35.0%
TAAACAGGATCTCATGTGAA+AGG - chr6_4:1749906-1749925 Msa0970270:CDS 35.0%
CAATCCTAACAAGATCAAAG+AGG - chr6_4:1749987-1750006 Msa0970270:CDS 35.0%
CTACACACACAGTTGAAATA+GGG - chr6_4:1750371-1750390 Msa0970270:intron 35.0%
TGTACATCTCAACGATCTAA+CGG - chr6_4:1750437-1750456 Msa0970270:intron 35.0%
! ATCTAACGGCTCAAGTTTTA+GGG - chr6_4:1750451-1750470 Msa0970270:intron 35.0%
! ACATTAAGGTGTTTGAATGG+TGG + chr6_4:1750489-1750508 None:intergenic 35.0%
TTTAGTATCAATGTCGTGTC+TGG - chr6_4:1750668-1750687 Msa0970270:CDS 35.0%
GATACTGAGCTAAAAACCAT+GGG + chr6_4:1751061-1751080 None:intergenic 35.0%
AGATACTGAGCTAAAAACCA+TGG + chr6_4:1751062-1751081 None:intergenic 35.0%
! CATTCCTATTTGTTGGATTC+TGG - chr6_4:1751096-1751115 Msa0970270:intron 35.0%
!!! CTGGTTTTTAAGTTGGGATT+AGG - chr6_4:1751115-1751134 Msa0970270:intron 35.0%
GTTGAATGTGATATGGCTTT+GGG - chr6_4:1751177-1751196 Msa0970270:intron 35.0%
ATAGCATATTTGCAGAACTC+TGG + chr6_4:1751274-1751293 None:intergenic 35.0%
TGCAAATATGCTATTCCTTC+TGG - chr6_4:1751280-1751299 Msa0970270:intron 35.0%
TAATCCTCAACTTGAAACCT+CGG - chr6_4:1751460-1751479 Msa0970270:CDS 35.0%
CCATGCCACATAATATAGTA+GGG + chr6_4:1751781-1751800 None:intergenic 35.0%
TCCATGCCACATAATATAGT+AGG + chr6_4:1751782-1751801 None:intergenic 35.0%
! TGGAATGAAAAAGTGCAATG+AGG + chr6_4:1751969-1751988 None:intergenic 35.0%
AAACAAACATCATGACATGG+GGG + chr6_4:1752085-1752104 None:intergenic 35.0%
CAAACAAACATCATGACATG+GGG + chr6_4:1752086-1752105 None:intergenic 35.0%
GTTTCAAATGAATTAGGAGC+AGG - chr6_4:1752127-1752146 Msa0970270:intron 35.0%
GTTAGAGTGGTTGTGATTAT+TGG - chr6_4:1752175-1752194 Msa0970270:intron 35.0%
TGTGATTATTGGAATTGCTG+AGG - chr6_4:1752186-1752205 Msa0970270:intron 35.0%
TGTGAATTACATTGCGGATA+TGG - chr6_4:1752282-1752301 Msa0970270:intron 35.0%
CTAACAGAAACACAAAGAAG+AGG + chr6_4:1752310-1752329 None:intergenic 35.0%
!! GTTAGTGCTGATAGTCTAAT+TGG - chr6_4:1752325-1752344 Msa0970270:intron 35.0%
TATATGAATGTGAACTGCAG+GGG - chr6_4:1752805-1752824 Msa0970270:intron 35.0%
CTTGGAGCTTACTATATTGT+GGG - chr6_4:1752872-1752891 Msa0970270:intron 35.0%
ATTAACTGATTGGCAGAAAG+AGG - chr6_4:1753009-1753028 Msa0970270:intron 35.0%
CATGTGCTCTCAAAATTTGT+AGG + chr6_4:1753416-1753435 None:intergenic 35.0%
!! AATTTTGAGAGCACATGCTT+TGG - chr6_4:1753419-1753438 Msa0970270:CDS 35.0%
CTAAGAAAGAGTGATGACCA+TGG - chr6_4:1749486-1749505 Msa0970270:three_prime_UTR 40.0%
GTTGAAGAAGGTGAGTTTCA+TGG - chr6_4:1749551-1749570 Msa0970270:three_prime_UTR 40.0%
GAAACTGTTACAGCTACCAT+TGG + chr6_4:1749582-1749601 None:intergenic 40.0%
AGTGGTTTCTCTTATGATGG+TGG - chr6_4:1749617-1749636 Msa0970270:three_prime_UTR 40.0%
GTGGTTTCTCTTATGATGGT+GGG - chr6_4:1749618-1749637 Msa0970270:three_prime_UTR 40.0%
TTCAGCAAAAGACATGGCAA+TGG + chr6_4:1749679-1749698 None:intergenic 40.0%
GCTTAGAGATGCAAACTAGT+TGG + chr6_4:1749782-1749801 None:intergenic 40.0%
TGTCCCTCTTTGATCTTGTT+AGG + chr6_4:1749994-1750013 None:intergenic 40.0%
GTGAAGACTACAGAGTAGTT+GGG - chr6_4:1750278-1750297 Msa0970270:intron 40.0%
ACAGAGTAGTTGGGTATAGT+TGG - chr6_4:1750287-1750306 Msa0970270:intron 40.0%
CCTATTTCAACTGTGTGTGT+AGG + chr6_4:1750373-1750392 None:intergenic 40.0%
CCTACACACACAGTTGAAAT+AGG - chr6_4:1750370-1750389 Msa0970270:intron 40.0%
! GATCTAACGGCTCAAGTTTT+AGG - chr6_4:1750450-1750469 Msa0970270:intron 40.0%
! GGGACATTAAGGTGTTTGAA+TGG + chr6_4:1750492-1750511 None:intergenic 40.0%
GTTTGCATTACAGTTGGGAA+TGG - chr6_4:1750757-1750776 Msa0970270:CDS 40.0%
ACACTATGTGGACAAACCTT+TGG - chr6_4:1750794-1750813 Msa0970270:intron 40.0%
! GCAGAAGAGTATGGAAAACT+TGG - chr6_4:1750818-1750837 Msa0970270:intron 40.0%
GTTTCCCAATATCTCTTGTG+TGG - chr6_4:1750882-1750901 Msa0970270:intron 40.0%
AAGTGCATAGCCAAATAGAG+CGG + chr6_4:1750993-1751012 None:intergenic 40.0%
! ATTCGCTATTTCCAGACTCA+GGG - chr6_4:1751025-1751044 Msa0970270:intron 40.0%
AAGTTGGGATTAGGACACAT+TGG - chr6_4:1751124-1751143 Msa0970270:intron 40.0%
! ATTGGAGCTGCTTTAGCTAT+TGG - chr6_4:1751142-1751161 Msa0970270:intron 40.0%
GGTTGAATGTGATATGGCTT+TGG - chr6_4:1751176-1751195 Msa0970270:intron 40.0%
CATATTTGCAGAACTCTGGT+AGG + chr6_4:1751270-1751289 None:intergenic 40.0%
! TTCCTTCTGGACTCATGTTT+TGG - chr6_4:1751293-1751312 Msa0970270:intron 40.0%
TACCAAAACATGAGTCCAGA+AGG + chr6_4:1751298-1751317 None:intergenic 40.0%
!! GAGGTTTCAAGTTGAGGATT+AGG + chr6_4:1751461-1751480 None:intergenic 40.0%
CCCTACTATATTATGTGGCA+TGG - chr6_4:1751778-1751797 Msa0970270:CDS 40.0%
AGGAAATCCAAAGACAGCTA+AGG - chr6_4:1752147-1752166 Msa0970270:intron 40.0%
GGAAATCCAAAGACAGCTAA+GGG - chr6_4:1752148-1752167 Msa0970270:intron 40.0%
AGTCTAATTGGAGCTCTTTC+AGG - chr6_4:1752337-1752356 Msa0970270:intron 40.0%
ACCGTCTAATCTCGATTCAA+CGG - chr6_4:1752692-1752711 Msa0970270:intron 40.0%
! AGGAGGTGGATTTCAAGAAA+TGG - chr6_4:1752835-1752854 Msa0970270:intron 40.0%
! GGAGGTGGATTTCAAGAAAT+GGG - chr6_4:1752836-1752855 Msa0970270:intron 40.0%
! GAGGTGGATTTCAAGAAATG+GGG - chr6_4:1752837-1752856 Msa0970270:intron 40.0%
! AGGTGGATTTCAAGAAATGG+GGG - chr6_4:1752838-1752857 Msa0970270:intron 40.0%
CCACAATATAGTAAGCTCCA+AGG + chr6_4:1752874-1752893 None:intergenic 40.0%
CCTTGGAGCTTACTATATTG+TGG - chr6_4:1752871-1752890 Msa0970270:intron 40.0%
AAATGCAAAGGGATTGTGGA+TGG - chr6_4:1752934-1752953 Msa0970270:intron 40.0%
AATGCAAAGGGATTGTGGAT+GGG - chr6_4:1752935-1752954 Msa0970270:intron 40.0%
CATGTGATTGATTGCATTGC+AGG - chr6_4:1753138-1753157 Msa0970270:intron 40.0%
ATTGCAGGCAACAAAAGCAA+GGG - chr6_4:1753153-1753172 Msa0970270:intron 40.0%
AACTAACAACACATTGGTGG+TGG - chr6_4:1753201-1753220 Msa0970270:CDS 40.0%
! CTCTAGAGAGATGAGTAAGG+AGG - chr6_4:1749449-1749468 Msa0970270:three_prime_UTR 45.0%
TAGAGAGATGAGTAAGGAGG+TGG - chr6_4:1749452-1749471 Msa0970270:three_prime_UTR 45.0%
AGTGATGACCATGGAAGTGA+TGG - chr6_4:1749495-1749514 Msa0970270:three_prime_UTR 45.0%
CAACTCTTCCATCACTTCCA+TGG + chr6_4:1749506-1749525 None:intergenic 45.0%
!! CTTATGATGGTGGGACATCT+CGG - chr6_4:1749627-1749646 Msa0970270:three_prime_UTR 45.0%
GGTGAAGACTACAGAGTAGT+TGG - chr6_4:1750277-1750296 Msa0970270:intron 45.0%
GTAGGATCTTGTCACACAAC+AGG + chr6_4:1750355-1750374 None:intergenic 45.0%
GGTGCATTGGAAACACTATG+TGG - chr6_4:1750782-1750801 Msa0970270:intron 45.0%
! ACCTTTGGTGCAGAAGAGTA+TGG - chr6_4:1750809-1750828 Msa0970270:intron 45.0%
TCCATACTCTTCTGCACCAA+AGG + chr6_4:1750813-1750832 None:intergenic 45.0%
!!! CTGTTTTTTAGCCAAGACCC+TGG - chr6_4:1750926-1750945 Msa0970270:CDS 45.0%
GAGCTACATGAGACATTCCA+GGG + chr6_4:1750946-1750965 None:intergenic 45.0%
TACCTCATTCCCGCTCTATT+TGG - chr6_4:1750980-1750999 Msa0970270:intron 45.0%
AGTGCATAGCCAAATAGAGC+GGG + chr6_4:1750992-1751011 None:intergenic 45.0%
! GATTCGCTATTTCCAGACTC+AGG - chr6_4:1751024-1751043 Msa0970270:intron 45.0%
GAAAGATCATTCCCTGAGTC+TGG + chr6_4:1751039-1751058 None:intergenic 45.0%
TCAGGGAATGATCTTTCCCA+TGG - chr6_4:1751042-1751061 Msa0970270:intron 45.0%
TTGAGGATTAGGCAAAAGCC+CGG + chr6_4:1751450-1751469 None:intergenic 45.0%
!! AGAACCGAGGTTTCAAGTTG+AGG + chr6_4:1751467-1751486 None:intergenic 45.0%
AAACCTCGGTTCTTTCTGTC+TGG - chr6_4:1751474-1751493 Msa0970270:intron 45.0%
GCAGAAGCTCCAATTGCATA+TGG + chr6_4:1751989-1752008 None:intergenic 45.0%
ATGCAATTGGAGCTTCTGCA+AGG - chr6_4:1751990-1752009 Msa0970270:CDS 45.0%
ATTGGAGCTTCTGCAAGGTT+TGG - chr6_4:1751995-1752014 Msa0970270:CDS 45.0%
! AGCTTCTGCAAGGTTTGGTT+TGG - chr6_4:1752000-1752019 Msa0970270:CDS 45.0%
!! CTGCAAGGTTTGGTTTGGTT+TGG - chr6_4:1752005-1752024 Msa0970270:CDS 45.0%
GCCGTTGAATCGAGATTAGA+CGG + chr6_4:1752696-1752715 None:intergenic 45.0%
TTGTGGATGGGAACTCTATC+AGG - chr6_4:1752947-1752966 Msa0970270:intron 45.0%
CATTGCAGGCAACAAAAGCA+AGG - chr6_4:1753152-1753171 Msa0970270:intron 45.0%
GAGTTTCATGGCAGCTCCAA+TGG - chr6_4:1749563-1749582 Msa0970270:three_prime_UTR 50.0%
GCATTACAGTTGGGAATGGC+TGG - chr6_4:1750761-1750780 Msa0970270:CDS 50.0%
CATGAGACATTCCAGGGTCT+TGG + chr6_4:1750940-1750959 None:intergenic 50.0%
CGAGCTACATGAGACATTCC+AGG + chr6_4:1750947-1750966 None:intergenic 50.0%
AGCCAAATAGAGCGGGAATG+AGG + chr6_4:1750985-1751004 None:intergenic 50.0%
TCACCAGACAGAAAGAACCG+AGG + chr6_4:1751480-1751499 None:intergenic 50.0%
ACAGCTCCCTTAGCTGTCTT+TGG + chr6_4:1752157-1752176 None:intergenic 50.0%
AGCTAAGGGAGCTGTTAGAG+TGG - chr6_4:1752162-1752181 Msa0970270:intron 50.0%
ATGGGGGCTTATGTGAACCT+TGG - chr6_4:1752854-1752873 Msa0970270:intron 50.0%
AGGCAACAAAAGCAAGGGAG+AGG - chr6_4:1753158-1753177 Msa0970270:intron 50.0%
GTTGGGAATGGCTGGTGCAT+TGG - chr6_4:1750769-1750788 Msa0970270:intron 55.0%
TGAACTGCAGGGGTTGCTAG+AGG - chr6_4:1752815-1752834 Msa0970270:intron 55.0%
ACTGCAGGGGTTGCTAGAGG+AGG - chr6_4:1752818-1752837 Msa0970270:intron 60.0%
GCAGGGGTTGCTAGAGGAGG+TGG - chr6_4:1752821-1752840 Msa0970270:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 1749424 1753476 1749424 ID=Msa0970270;Name=Msa0970270
chr6_4 mRNA 1749424 1753476 1749424 ID=Msa0970270-mRNA-1;Parent=Msa0970270;Name=Msa0970270-mRNA-1;_AED=0.12;_eAED=0.12;_QI=17|1|1|1|1|1|7|248|493
chr6_4 exon 1749424 1749740 1749424 ID=Msa0970270-mRNA-1:exon:865;Parent=Msa0970270-mRNA-1
chr6_4 exon 1749870 1750075 1749870 ID=Msa0970270-mRNA-1:exon:864;Parent=Msa0970270-mRNA-1
chr6_4 exon 1750542 1750780 1750542 ID=Msa0970270-mRNA-1:exon:863;Parent=Msa0970270-mRNA-1
chr6_4 exon 1750889 1750945 1750889 ID=Msa0970270-mRNA-1:exon:862;Parent=Msa0970270-mRNA-1
chr6_4 exon 1751405 1751491 1751405 ID=Msa0970270-mRNA-1:exon:861;Parent=Msa0970270-mRNA-1
chr6_4 exon 1751586 1752130 1751586 ID=Msa0970270-mRNA-1:exon:860;Parent=Msa0970270-mRNA-1
chr6_4 exon 1753181 1753476 1753181 ID=Msa0970270-mRNA-1:exon:859;Parent=Msa0970270-mRNA-1
chr6_4 five_prime_UTR 1753460 1753476 1753460 ID=Msa0970270-mRNA-1:five_prime_utr;Parent=Msa0970270-mRNA-1
chr6_4 CDS 1753181 1753459 1753181 ID=Msa0970270-mRNA-1:cds;Parent=Msa0970270-mRNA-1
chr6_4 CDS 1751586 1752130 1751586 ID=Msa0970270-mRNA-1:cds;Parent=Msa0970270-mRNA-1
chr6_4 CDS 1751405 1751491 1751405 ID=Msa0970270-mRNA-1:cds;Parent=Msa0970270-mRNA-1
chr6_4 CDS 1750889 1750945 1750889 ID=Msa0970270-mRNA-1:cds;Parent=Msa0970270-mRNA-1
chr6_4 CDS 1750542 1750780 1750542 ID=Msa0970270-mRNA-1:cds;Parent=Msa0970270-mRNA-1
chr6_4 CDS 1749870 1750075 1749870 ID=Msa0970270-mRNA-1:cds;Parent=Msa0970270-mRNA-1
chr6_4 CDS 1749672 1749740 1749672 ID=Msa0970270-mRNA-1:cds;Parent=Msa0970270-mRNA-1
chr6_4 three_prime_UTR 1749424 1749671 1749424 ID=Msa0970270-mRNA-1:three_prime_utr;Parent=Msa0970270-mRNA-1
Gene Sequence

>Msa0970270

ATGAAAAACTCTAGAGAGATGAGTAAGGAGGTGGCAACACCATTGCTAAGAAAGAGTGATGACCATGGAAGTGATGGAAGAGTTGAGATTGAGAATACATTCATTCAAGAGTTGAAGAAGGTGAGTTTCATGGCAGCTCCAATGGTAGCTGTAACAGTTTCACAATATCTTCTTCAAGTGGTTTCTCTTATGATGGTGGGACATCTCGGTATACTTGTTTCATTCTCTGGTGTTTCCATTGCCATGTCTTTTGCTGAAGTTACTGGCTTTAGTGTCCTTTTGGGAATGGCTGGTGCATTGGAAACACTATGTGGACAAACCTTTGGTGCAGAAGAGTATGGAAAACTTGGAAACTACACTTGCTGTGCAATATTAACTCTAACTGTAGTTTGTTTCCCAATATCTCTTGTGTGGATATTCACAGATAAAATACTACTGTTTTTTAGCCAAGACCCTGGAATGTCTCATGTAGCTCGCGAGTACTGCATATACCTCATTCCCGCTCTATTTGGCTATGCACTTCTTCAAGCGTTGATTCGCTATTTCCAGACTCAGGGAATGATCTTTCCCATGGTTTTTAGCTCAGTATCTGCTCTATTTTTGCACATTCCTATTTGTTGGATTCTGGTTTTTAAGTTGGGATTAGGACACATTGGAGCTGCTTTAGCTATTGGAATTTCTTATTGGTTGAATGTGATATGGCTTTGGGTTTATATTAAGTACTCTCCATCATGTCAAAAAACCAAGATTGTGTTTTCTACTCATGCTTTACATAACCTACCAGAGTTCTGCAAATATGCTATTCCTTCTGGACTCATGTTTTGTTTTGAATGGTGGTCCTTTGAGATTCTTATTTTAATTGCCGGGCTTTTGCCTAATCCTCAACTTGAAACCTCGGTTCTTTCTGTCTGCTTGAACACTACCTCATTGCACTTTTTCATTCCATATGCAATTGGAGCTTCTGCAAGTACTCGTGTTTCAAATGAATTAGGAGCAGGAAATCCAAAGACAGCTAAGGGAGCTGTTAGAGTGGTTGTGATTATTGGAATTGCTGAGGCAATTATTGTCAGCACTTTCTTCCTTTGCTTTAGAAATATTTTAGGATATGCTTATAGCAATGATGAACAAGTTGTGAATTACATTGCGGATATGGTTCCTCTTCTTTGTGTTTCTGTTAGTGCTGATAGTCTAATTGGAGCTCTTTCAGGGGTTGCTAGAGGAGGTGGATTTCAAGAAATGGGGGCTTATGTGAACCTTGGAGCTTACTATATTGTGGGAATTCCTATTGGTTTGTTATTAGGTTTTCATCTAAAATTAAATGCAAAGGGATTGTGGATGGGAACTCTATCAGGATCTGTTTTAAATGTCATTATACTATCTATTGTAACTGCATTAACTGATTGGCAGAAAGAGGCAACAAAAGCAAGGGAGAGGATAATTGACCAGTCAATAAAAACTAACAACACATTGGTGGTGGCATGA
Protein sequence

>Msa0970270

MKNSREMSKEVATPLLRKSDDHGSDGRVEIENTFIQELKKVSFMAAPMVAVTVSQYLLQVVSLMMVGHLGILVSFSGVSIAMSFAEVTGFSVLLGMAGALETLCGQTFGAEEYGKLGNYTCCAILTLTVVCFPISLVWIFTDKILLFFSQDPGMSHVAREYCIYLIPALFGYALLQALIRYFQTQGMIFPMVFSSVSALFLHIPICWILVFKLGLGHIGAALAIGISYWLNVIWLWVYIKYSPSCQKTKIVFSTHALHNLPEFCKYAIPSGLMFCFEWWSFEILILIAGLLPNPQLETSVLSVCLNTTSLHFFIPYAIGASASTRVSNELGAGNPKTAKGAVRVVVIIGIAEAIIVSTFFLCFRNILGYAYSNDEQVVNYIADMVPLLCVSVSADSLIGALSGVARGGGFQEMGAYVNLGAYYIVGIPIGLLLGFHLKLNAKGLWMGTLSGSVLNVIILSIVTALTDWQKEATKARERIIDQSIKTNNTLVVA*