Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764680 | AES96431.1 | 96.541 | 318 | 7 | 2 | 1 | 318 | 1 | 314 | 0.0 | 621 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764680 | sp|Q9LVS0|KUA1_ARATH | 51.872 | 187 | 53 | 3 | 3 | 174 | 1 | 165 | 1.06e-54 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764680 | G7K6Z9 | 96.541 | 318 | 7 | 2 | 1 | 318 | 1 | 314 | 0.0 | 621 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0764680 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0764680 | -0.841931 | 3.521163e-58 | -8.615850e-47 |
| Msa0023010 | Msa0764680 | -0.820967 | 5.183609e-53 | -8.615850e-47 |
| Msa0023050 | Msa0764680 | -0.806403 | 8.367586e-50 | -8.615850e-47 |
| Msa0026680 | Msa0764680 | -0.809060 | 2.279855e-50 | -8.615850e-47 |
| Msa0055180 | Msa0764680 | -0.838621 | 2.579726e-57 | -8.615850e-47 |
| Msa0077530 | Msa0764680 | -0.800522 | 1.385401e-48 | -8.615850e-47 |
| Msa0100740 | Msa0764680 | -0.807784 | 4.267556e-50 | -8.615850e-47 |
| Msa0604010 | Msa0764680 | -0.851417 | 8.998664e-61 | -8.615850e-47 |
| Msa0605630 | Msa0764680 | -0.811495 | 6.805636e-51 | -8.615850e-47 |
| Msa0609660 | Msa0764680 | 0.803909 | 2.783643e-49 | -8.615850e-47 |
| Msa0620890 | Msa0764680 | -0.871428 | 6.884516e-67 | -8.615850e-47 |
| Msa0646580 | Msa0764680 | -0.814277 | 1.672428e-51 | -8.615850e-47 |
| Msa0650500 | Msa0764680 | 0.804595 | 2.003057e-49 | -8.615850e-47 |
| Msa0666560 | Msa0764680 | 0.832140 | 1.120555e-55 | -8.615850e-47 |
| Msa0692240 | Msa0764680 | 0.814481 | 1.507455e-51 | -8.615850e-47 |
| Msa0708930 | Msa0764680 | -0.829171 | 5.976799e-55 | -8.615850e-47 |
| Msa0717230 | Msa0764680 | 0.816609 | 5.062663e-52 | -8.615850e-47 |
| Msa0724140 | Msa0764680 | 0.863123 | 3.114977e-64 | -8.615850e-47 |
| Msa0764680 | Msa0799680 | 0.814496 | 1.495895e-51 | -8.615850e-47 |
| Msa0764680 | Msa0817730 | -0.803852 | 2.860877e-49 | -8.615850e-47 |
| Msa0764680 | Msa0837930 | 0.814209 | 1.731289e-51 | -8.615850e-47 |
| Msa0764680 | Msa0844220 | 0.906746 | 1.067100e-80 | -8.615850e-47 |
| Msa0764680 | Msa0867730 | -0.807681 | 4.488726e-50 | -8.615850e-47 |
| Msa0764680 | Msa0982130 | -0.838370 | 2.994836e-57 | -8.615850e-47 |
| Msa0764680 | Msa1030620 | -0.808700 | 2.722270e-50 | -8.615850e-47 |
| Msa0764680 | Msa1034740 | 0.822181 | 2.717525e-53 | -8.615850e-47 |
| Msa0764680 | Msa1037420 | -0.804364 | 2.238766e-49 | -8.615850e-47 |
| Msa0764680 | Msa1123810 | -0.811676 | 6.215045e-51 | -8.615850e-47 |
| Msa0764680 | Msa1172610 | 0.814701 | 1.347284e-51 | -8.615850e-47 |
| Msa0764680 | Msa1181850 | -0.804434 | 2.164267e-49 | -8.615850e-47 |
| Msa0764680 | Msa1384360 | 0.824481 | 7.886435e-54 | -8.615850e-47 |
| Msa0764680 | Msa1385770 | -0.815187 | 1.051048e-51 | -8.615850e-47 |
| Msa0764680 | Msa1409240 | -0.812646 | 3.818617e-51 | -8.615850e-47 |
| Msa0764680 | Msa1434140 | -0.812725 | 3.668969e-51 | -8.615850e-47 |
| Msa0138630 | Msa0764680 | -0.813243 | 2.824993e-51 | -8.615850e-47 |
| Msa0156370 | Msa0764680 | -0.847591 | 1.049592e-59 | -8.615850e-47 |
| Msa0172970 | Msa0764680 | -0.806883 | 6.623914e-50 | -8.615850e-47 |
| Msa0375310 | Msa0764680 | -0.805254 | 1.458662e-49 | -8.615850e-47 |
| Msa0402210 | Msa0764680 | -0.851582 | 8.081800e-61 | -8.615850e-47 |
| Msa0421500 | Msa0764680 | -0.813407 | 2.600476e-51 | -8.615850e-47 |
| Msa0435980 | Msa0764680 | 0.823990 | 1.028710e-53 | -8.615850e-47 |
| Msa0445330 | Msa0764680 | -0.802095 | 6.599421e-49 | -8.615850e-47 |
| Msa0469560 | Msa0764680 | 0.833577 | 4.924705e-56 | -8.615850e-47 |
| Msa0262310 | Msa0764680 | -0.803850 | 2.863332e-49 | -8.615850e-47 |
| Msa0265430 | Msa0764680 | -0.832768 | 7.830514e-56 | -8.615850e-47 |
| Msa0340380 | Msa0764680 | -0.827028 | 1.961003e-54 | -8.615850e-47 |
| Msa0355140 | Msa0764680 | -0.839170 | 1.860211e-57 | -8.615850e-47 |
| Msa0483770 | Msa0764680 | -0.843313 | 1.512974e-58 | -8.615850e-47 |
| Msa0513990 | Msa0764680 | -0.823318 | 1.477099e-53 | -8.615850e-47 |
| Msa0515270 | Msa0764680 | 0.845245 | 4.578786e-59 | -8.615850e-47 |
| Msa0527690 | Msa0764680 | 0.822621 | 2.148240e-53 | -8.615850e-47 |
| Msa0550120 | Msa0764680 | -0.827360 | 1.633339e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764680 | MtrunA17_Chr5g0415191 | 96.541 | 318 | 7 | 2 | 1 | 318 | 1 | 314 | 0.0 | 621 |
| Msa0764680 | MtrunA17_Chr4g0055931 | 48.309 | 207 | 65 | 5 | 3 | 190 | 1 | 184 | 2.36e-55 | 182 |
| Msa0764680 | MtrunA17_Chr2g0331031 | 48.095 | 210 | 60 | 6 | 3 | 185 | 1 | 188 | 1.42e-52 | 176 |
| Msa0764680 | MtrunA17_Chr4g0059701 | 54.680 | 203 | 56 | 7 | 24 | 211 | 8 | 189 | 3.03e-48 | 163 |
| Msa0764680 | MtrunA17_Chr6g0488471 | 47.368 | 171 | 78 | 4 | 3 | 170 | 1 | 162 | 3.29e-45 | 155 |
| Msa0764680 | MtrunA17_Chr8g0389241 | 40.796 | 201 | 96 | 6 | 5 | 190 | 4 | 196 | 9.80e-39 | 138 |
| Msa0764680 | MtrunA17_Chr3g0092621 | 74.118 | 85 | 19 | 2 | 105 | 187 | 84 | 167 | 4.46e-36 | 128 |
| Msa0764680 | MtrunA17_Chr3g0104071 | 68.966 | 87 | 25 | 1 | 94 | 178 | 134 | 220 | 4.92e-34 | 127 |
| Msa0764680 | MtrunA17_Chr4g0062741 | 72.603 | 73 | 20 | 0 | 99 | 171 | 132 | 204 | 2.80e-33 | 124 |
| Msa0764680 | MtrunA17_Chr1g0162081 | 71.233 | 73 | 21 | 0 | 99 | 171 | 116 | 188 | 1.45e-32 | 122 |
| Msa0764680 | MtrunA17_Chr5g0429521 | 70.513 | 78 | 23 | 0 | 99 | 176 | 126 | 203 | 1.98e-32 | 122 |
| Msa0764680 | MtrunA17_Chr3g0135671 | 40.113 | 177 | 79 | 5 | 1 | 169 | 1 | 158 | 2.31e-31 | 117 |
| Msa0764680 | MtrunA17_Chr7g0241761 | 67.949 | 78 | 25 | 0 | 99 | 176 | 134 | 211 | 4.17e-31 | 119 |
| Msa0764680 | MtrunA17_Chr1g0210471 | 68.421 | 76 | 24 | 0 | 96 | 171 | 115 | 190 | 9.25e-31 | 116 |
| Msa0764680 | MtrunA17_Chr5g0436501 | 50.847 | 118 | 53 | 2 | 92 | 207 | 112 | 226 | 9.11e-30 | 114 |
| Msa0764680 | MtrunA17_Chr6g0452791 | 58.537 | 82 | 24 | 1 | 105 | 186 | 80 | 151 | 3.96e-25 | 99.4 |
| Msa0764680 | MtrunA17_Chr5g0440731 | 40.385 | 104 | 56 | 2 | 99 | 196 | 99 | 202 | 4.55e-20 | 88.6 |
| Msa0764680 | MtrunA17_Chr5g0409841 | 50.617 | 81 | 34 | 2 | 98 | 172 | 81 | 161 | 1.01e-19 | 86.3 |
| Msa0764680 | MtrunA17_Chr5g0440741 | 35.032 | 157 | 90 | 6 | 107 | 255 | 102 | 254 | 1.88e-19 | 86.7 |
| Msa0764680 | MtrunA17_Chr5g0409831 | 65.455 | 55 | 19 | 0 | 98 | 152 | 70 | 124 | 1.62e-18 | 82.8 |
| Msa0764680 | MtrunA17_Chr8g0365011 | 47.436 | 78 | 27 | 2 | 107 | 170 | 94 | 171 | 6.94e-16 | 76.6 |
| Msa0764680 | MtrunA17_Chr8g0364731 | 61.017 | 59 | 21 | 1 | 114 | 170 | 10 | 68 | 1.01e-15 | 74.3 |
| Msa0764680 | MtrunA17_Chr5g0432921 | 45.455 | 77 | 39 | 2 | 97 | 171 | 105 | 180 | 6.15e-13 | 67.0 |
| Msa0764680 | MtrunA17_Chr1g0192061 | 48.571 | 70 | 32 | 2 | 107 | 173 | 63 | 131 | 9.53e-13 | 65.9 |
| Msa0764680 | MtrunA17_Chr5g0432941 | 49.254 | 67 | 31 | 2 | 107 | 171 | 115 | 180 | 3.06e-12 | 65.1 |
| Msa0764680 | MtrunA17_Chr3g0113121 | 45.833 | 72 | 32 | 1 | 107 | 171 | 97 | 168 | 6.09e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0764680 | AT1G70000.1 | 48.632 | 329 | 88 | 12 | 3 | 318 | 1 | 261 | 1.76e-73 | 227 |
| Msa0764680 | AT1G70000.2 | 48.632 | 329 | 88 | 12 | 3 | 318 | 1 | 261 | 1.76e-73 | 227 |
| Msa0764680 | AT5G47390.1 | 51.872 | 187 | 53 | 3 | 3 | 174 | 1 | 165 | 1.08e-55 | 185 |
| Msa0764680 | AT5G61620.1 | 45.652 | 184 | 82 | 5 | 1 | 176 | 6 | 179 | 1.66e-46 | 160 |
| Msa0764680 | AT3G16350.1 | 43.162 | 234 | 65 | 5 | 3 | 185 | 1 | 217 | 1.93e-43 | 154 |
| Msa0764680 | AT5G56840.1 | 46.369 | 179 | 82 | 6 | 3 | 179 | 1 | 167 | 2.25e-43 | 149 |
| Msa0764680 | AT1G74840.2 | 52.551 | 196 | 55 | 5 | 20 | 199 | 15 | 188 | 2.49e-43 | 149 |
| Msa0764680 | AT1G74840.1 | 55.000 | 180 | 45 | 4 | 20 | 185 | 15 | 172 | 4.71e-43 | 149 |
| Msa0764680 | AT1G19000.2 | 51.515 | 198 | 52 | 6 | 20 | 195 | 13 | 188 | 1.21e-42 | 149 |
| Msa0764680 | AT1G19000.1 | 51.515 | 198 | 52 | 6 | 20 | 195 | 13 | 188 | 1.21e-42 | 149 |
| Msa0764680 | AT5G58900.1 | 64.773 | 88 | 29 | 1 | 95 | 180 | 129 | 216 | 2.04e-33 | 124 |
| Msa0764680 | AT1G49010.1 | 73.973 | 73 | 19 | 0 | 99 | 171 | 128 | 200 | 3.75e-33 | 124 |
| Msa0764680 | AT5G08520.1 | 69.863 | 73 | 22 | 0 | 99 | 171 | 112 | 184 | 8.77e-32 | 120 |
| Msa0764680 | AT2G38090.1 | 69.333 | 75 | 23 | 0 | 100 | 174 | 136 | 210 | 1.14e-31 | 120 |
| Msa0764680 | AT5G04760.1 | 73.611 | 72 | 19 | 0 | 100 | 171 | 94 | 165 | 3.35e-31 | 117 |
| Msa0764680 | AT5G01200.1 | 67.123 | 73 | 24 | 0 | 99 | 171 | 140 | 212 | 1.54e-29 | 114 |
| Msa0764680 | AT3G11280.2 | 60.976 | 82 | 32 | 0 | 94 | 175 | 116 | 197 | 1.64e-28 | 111 |
| Msa0764680 | AT3G11280.1 | 60.976 | 82 | 32 | 0 | 94 | 175 | 116 | 197 | 1.64e-28 | 111 |
| Msa0764680 | AT5G05790.2 | 59.756 | 82 | 33 | 0 | 94 | 175 | 120 | 201 | 1.06e-27 | 109 |
| Msa0764680 | AT5G05790.1 | 59.756 | 82 | 33 | 0 | 94 | 175 | 120 | 201 | 1.06e-27 | 109 |
| Msa0764680 | AT5G23650.1 | 56.579 | 76 | 33 | 0 | 95 | 170 | 110 | 185 | 5.19e-22 | 95.1 |
| Msa0764680 | AT3G10580.2 | 57.143 | 70 | 28 | 1 | 101 | 170 | 91 | 158 | 1.27e-21 | 92.4 |
| Msa0764680 | AT4G09450.1 | 51.685 | 89 | 39 | 2 | 86 | 170 | 68 | 156 | 1.90e-21 | 90.5 |
| Msa0764680 | AT3G10580.1 | 57.143 | 70 | 28 | 1 | 101 | 170 | 91 | 158 | 2.11e-21 | 92.4 |
| Msa0764680 | AT3G10590.1 | 50.617 | 81 | 37 | 2 | 95 | 173 | 99 | 178 | 6.60e-19 | 84.0 |
Find 104 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATTGGTGTTGGCCTAAT+TGG | 0.245624 | 5_2:-25058283 | None:intergenic |
| ATCTCCGGCGGCGGCGGTTC+TGG | 0.294270 | 5_2:-25057181 | None:intergenic |
| GACGAATGGCTGCTACTTTC+CGG | 0.303324 | 5_2:-25058427 | None:intergenic |
| CTGACCTCGTTTGCGTTCTC+TGG | 0.320215 | 5_2:-25056921 | None:intergenic |
| TGGTGGTGGTGGTGTTGGGG+TGG | 0.323947 | 5_2:-25056751 | None:intergenic |
| GCATATCCATCTTCACATTA+TGG | 0.334586 | 5_2:+25058181 | Msa0764680:CDS |
| GGTGTTGTTGGTTGTGGTGG+TGG | 0.346000 | 5_2:-25056768 | None:intergenic |
| GAACACAAGTTGTTCTTGTT+GGG | 0.357954 | 5_2:+25057044 | Msa0764680:CDS |
| GATGGAACCTTCAACTATAA+TGG | 0.360343 | 5_2:+25058102 | Msa0764680:CDS |
| AAAGAGTGGCCAAGCCAATT+AGG | 0.366908 | 5_2:+25058269 | Msa0764680:CDS |
| GTTGTTGGTTGTGGTGGTGG+TGG | 0.377166 | 5_2:-25056765 | None:intergenic |
| CTCATTACCGGCAATGTTAC+CGG | 0.380041 | 5_2:-25058241 | None:intergenic |
| TCACATTATGGCGGCATCCC+TGG | 0.390624 | 5_2:+25058193 | Msa0764680:CDS |
| GTTGGTTGTGGTGGTGGTGG+TGG | 0.391204 | 5_2:-25056762 | None:intergenic |
| GACTGGATCTCCGGCGGCGG+CGG | 0.396452 | 5_2:-25057187 | None:intergenic |
| GTTCTTGTTGGGGTTACAAC+AGG | 0.399465 | 5_2:+25057055 | Msa0764680:CDS |
| AACAGGTTGGTAAAGGTGAT+TGG | 0.399494 | 5_2:+25057072 | Msa0764680:CDS |
| ACTCTTTCAGCACTCATTAC+CGG | 0.403021 | 5_2:-25058253 | None:intergenic |
| GTCATTGAAGCTGCAACCTT+CGG | 0.407621 | 5_2:+25058384 | Msa0764680:CDS |
| GTGGTTGTTCATATTGAGAA+AGG | 0.407804 | 5_2:-25056829 | None:intergenic |
| GTTGATGGTGTTGTTGGTTG+TGG | 0.418341 | 5_2:-25056774 | None:intergenic |
| TCATCTTCCATTATAGTTGA+AGG | 0.430302 | 5_2:-25058109 | None:intergenic |
| AGGATTGTTGATGGTGTTGT+TGG | 0.435529 | 5_2:-25056780 | None:intergenic |
| GTTGGGGTGGTTGTTTCCTC+CGG | 0.442684 | 5_2:-25056738 | None:intergenic |
| CACATTATGGCGGCATCCCT+GGG | 0.451781 | 5_2:+25058194 | Msa0764680:CDS |
| TCTCGGTCCGGTAACATTGC+CGG | 0.451875 | 5_2:+25058234 | Msa0764680:CDS |
| ATGGCTGCAGGGAAGTATAA+TGG | 0.461919 | 5_2:+25058481 | Msa0764680:CDS |
| AGAACACAAGTTGTTCTTGT+TGG | 0.463466 | 5_2:+25057043 | Msa0764680:CDS |
| CCCATCGGAAAAGGTGTCCC+AGG | 0.480895 | 5_2:-25058211 | None:intergenic |
| GATGTCATCGGATACATAAC+CGG | 0.484684 | 5_2:-25056879 | None:intergenic |
| GATACATAACCGGCATCCGC+GGG | 0.489451 | 5_2:-25056869 | None:intergenic |
| TGGTTGGTGAAGGTGTTCCT+TGG | 0.492029 | 5_2:+25057012 | Msa0764680:intron |
| GGGTTACAACAGGTTGGTAA+AGG | 0.495286 | 5_2:+25057065 | Msa0764680:CDS |
| AGATTAGCCATCTTAGAAGA+AGG | 0.500963 | 5_2:-25058310 | None:intergenic |
| TGGTGTTGGCCTAATTGGCT+TGG | 0.501496 | 5_2:-25058278 | None:intergenic |
| CTAGAAACTTTGTGAAAACA+AGG | 0.504909 | 5_2:+25057105 | Msa0764680:CDS |
| GATGACATCGTTCACGCCTC+TGG | 0.506341 | 5_2:+25056893 | Msa0764680:CDS |
| AGCTTCAATGACAATGGAAA+AGG | 0.506440 | 5_2:-25058373 | None:intergenic |
| ATAACCGGCATCCGCGGGGT+TGG | 0.510315 | 5_2:-25056864 | None:intergenic |
| AAGAATAAATATTACCGTAT+CGG | 0.511895 | 5_2:-25057225 | None:intergenic |
| CGTTGCATGTTCTCGAGTTG+TGG | 0.513462 | 5_2:-25056670 | None:intergenic |
| GGACCGAGACCCATCGGAAA+AGG | 0.518218 | 5_2:-25058220 | None:intergenic |
| TGTGAAGATGGATATGCGGC+GGG | 0.518568 | 5_2:-25058175 | None:intergenic |
| GCTGCCTCCTTCTTCTAAGA+TGG | 0.520621 | 5_2:+25058303 | Msa0764680:CDS |
| TAGCAGCCATTCGTCGTCAT+CGG | 0.522877 | 5_2:+25058435 | Msa0764680:CDS |
| GATGGTGTTGTTGGTTGTGG+TGG | 0.524552 | 5_2:-25056771 | None:intergenic |
| GGTGGTAATATCAAAGAGAC+TGG | 0.526759 | 5_2:-25057204 | None:intergenic |
| TTAGAAGAAGGAGGCAGCAT+TGG | 0.530338 | 5_2:-25058298 | None:intergenic |
| AACACAAGTTGTTCTTGTTG+GGG | 0.535418 | 5_2:+25057045 | Msa0764680:CDS |
| GATTCCAACCCCGCGGATGC+CGG | 0.538280 | 5_2:+25056860 | Msa0764680:CDS |
| AGAGACTGGATCTCCGGCGG+CGG | 0.543258 | 5_2:-25057190 | None:intergenic |
| TTGTGTTCTTCCTCTGTCCA+AGG | 0.544021 | 5_2:-25057029 | None:intergenic |
| GCAGGGAAGTATAATGGTGG+GGG | 0.547007 | 5_2:+25058487 | Msa0764680:CDS |
| ATAACCAGAACCGCCGCCGC+CGG | 0.548822 | 5_2:+25057177 | Msa0764680:CDS |
| TATCAAAGAGACTGGATCTC+CGG | 0.548838 | 5_2:-25057196 | None:intergenic |
| CTTTGATATTACCACCGATA+CGG | 0.550867 | 5_2:+25057211 | Msa0764680:CDS |
| TTGTTCATATTGAGAAAGGT+TGG | 0.551197 | 5_2:-25056825 | None:intergenic |
| GGGTTGGAATCTTGTGGAGG+TGG | 0.557505 | 5_2:-25056848 | None:intergenic |
| ATGCCGCCATAATGTGAAGA+TGG | 0.557994 | 5_2:-25058187 | None:intergenic |
| GCTGCAACCTTCGGTTCCAT+CGG | 0.562274 | 5_2:+25058393 | Msa0764680:CDS |
| ATTATACTTCCCTGCAGCCA+TGG | 0.565515 | 5_2:-25058479 | None:intergenic |
| TCCGGTGAATGATCTTCCGA+TGG | 0.572768 | 5_2:-25058409 | None:intergenic |
| TCCGCGGGGTTGGAATCTTG+TGG | 0.576478 | 5_2:-25056854 | None:intergenic |
| GAAGGAGGCAGCATTGGTGT+TGG | 0.579116 | 5_2:-25058292 | None:intergenic |
| CTGCAGGGAAGTATAATGGT+GGG | 0.579931 | 5_2:+25058485 | Msa0764680:CDS |
| TGCAGGGAAGTATAATGGTG+GGG | 0.579949 | 5_2:+25058486 | Msa0764680:CDS |
| GGCGGCGGTTCTGGTTATGA+CGG | 0.580334 | 5_2:-25057172 | None:intergenic |
| AATAAATATTACCGTATCGG+TGG | 0.581515 | 5_2:-25057222 | None:intergenic |
| GTTACCGGACCGAGACCCAT+CGG | 0.583498 | 5_2:-25058226 | None:intergenic |
| GCATGACTTGCAACCTGAGT+TGG | 0.584887 | 5_2:-25057131 | None:intergenic |
| TGAAGATGGATATGCGGCGG+GGG | 0.585757 | 5_2:-25058173 | None:intergenic |
| TGACAATGGAAAAGGCTCGA+TGG | 0.586187 | 5_2:-25058365 | None:intergenic |
| TGATCTTCCGATGGAACCGA+AGG | 0.587262 | 5_2:-25058400 | None:intergenic |
| TGCTCACAGTGCGGCAACAA+CGG | 0.587587 | 5_2:+25056647 | Msa0764680:CDS |
| GAAAACAAGGACACCAACTC+AGG | 0.592034 | 5_2:+25057118 | Msa0764680:CDS |
| TTGTTGGGGTTACAACAGGT+TGG | 0.610057 | 5_2:+25057059 | Msa0764680:CDS |
| GGTTGCAGCTTCAATGACAA+TGG | 0.610541 | 5_2:-25058379 | None:intergenic |
| GCGTTCTCTGGATCGACCAG+AGG | 0.617091 | 5_2:-25056909 | None:intergenic |
| ATGAAGCCGATGACGACGAA+TGG | 0.619919 | 5_2:-25058441 | None:intergenic |
| TGAAGGTGTTCCTTGGACAG+AGG | 0.622183 | 5_2:+25057019 | Msa0764680:intron |
| TCGAGAACATGCAACGACGG+TGG | 0.622712 | 5_2:+25056677 | Msa0764680:CDS |
| GGTTCTGGTTATGACGGCGG+AGG | 0.625551 | 5_2:-25057166 | None:intergenic |
| ATGTGAAGATGGATATGCGG+CGG | 0.625832 | 5_2:-25058176 | None:intergenic |
| GGATACATAACCGGCATCCG+CGG | 0.626209 | 5_2:-25056870 | None:intergenic |
| AGAGGCGTGAACGATGTCAT+CGG | 0.629917 | 5_2:-25056891 | None:intergenic |
| TCCATCGGAAGATCATTCAC+CGG | 0.635009 | 5_2:+25058408 | Msa0764680:CDS |
| TTTGGTGTTCGACTCACCGG+AGG | 0.638984 | 5_2:+25056722 | Msa0764680:CDS |
| CCATCGGAAAAGGTGTCCCA+GGG | 0.645708 | 5_2:-25058210 | None:intergenic |
| AACTCGAGAACATGCAACGA+CGG | 0.649079 | 5_2:+25056674 | Msa0764680:CDS |
| GCTGCAGGGAAGTATAATGG+TGG | 0.654189 | 5_2:+25058484 | Msa0764680:CDS |
| GGTAATGAGTGCTGAAAGAG+TGG | 0.656043 | 5_2:+25058255 | Msa0764680:CDS |
| CGATCCAGAGAACGCAAACG+AGG | 0.663587 | 5_2:+25056917 | Msa0764680:CDS |
| GTTGGTAAAGGTGATTGGAG+AGG | 0.666734 | 5_2:+25057077 | Msa0764680:CDS |
| TTAGCCATCTTAGAAGAAGG+AGG | 0.666938 | 5_2:-25058307 | None:intergenic |
| GCGGGGTTGGAATCTTGTGG+AGG | 0.674293 | 5_2:-25056851 | None:intergenic |
| GGCGGTTCTGGTTATGACGG+CGG | 0.676927 | 5_2:-25057169 | None:intergenic |
| CAAAGAGACTGGATCTCCGG+CGG | 0.680570 | 5_2:-25057193 | None:intergenic |
| TCTCGCACGTGCTCACAGTG+CGG | 0.694033 | 5_2:+25056638 | Msa0764680:CDS |
| TATCCATCTTCACATTATGG+CGG | 0.696782 | 5_2:+25058184 | Msa0764680:CDS |
| TCAATTTCAGCAAGAAACAG+TGG | 0.701868 | 5_2:+25058132 | Msa0764680:CDS |
| ATAATGTGAAGATGGATATG+CGG | 0.713042 | 5_2:-25058179 | None:intergenic |
| GTGAAGATGGATATGCGGCG+GGG | 0.716036 | 5_2:-25058174 | None:intergenic |
| TCCACAAGATTCCAACCCCG+CGG | 0.717102 | 5_2:+25056853 | Msa0764680:CDS |
| ATACATAACCGGCATCCGCG+GGG | 0.725166 | 5_2:-25056868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTAATGTTTTTTGTTT+TGG | + | chr5_2:25056992-25057011 | Msa0764680:intron | 10.0% |
| !! | GAAATTGTTAAAAATATAAA+AGG | - | chr5_2:25057275-25057294 | None:intergenic | 10.0% |
| !! | AATTATACGAAATATATTTA+AGG | - | chr5_2:25057351-25057370 | None:intergenic | 10.0% |
| !!! | TATATTAATGTTTTTTGTTT+TGG | + | chr5_2:25056992-25057011 | Msa0764680:intron | 10.0% |
| !! | GAAATTGTTAAAAATATAAA+AGG | - | chr5_2:25057275-25057294 | None:intergenic | 10.0% |
| !! | AATTATACGAAATATATTTA+AGG | - | chr5_2:25057351-25057370 | None:intergenic | 10.0% |
| !! | TAAAATCAGATTATTAGAAA+AGG | - | chr5_2:25057297-25057316 | None:intergenic | 15.0% |
| !! | TAATATATCATGATTACAAT+TGG | - | chr5_2:25057635-25057654 | None:intergenic | 15.0% |
| !! | TAAAATCAGATTATTAGAAA+AGG | - | chr5_2:25057297-25057316 | None:intergenic | 15.0% |
| !! | TAATATATCATGATTACAAT+TGG | - | chr5_2:25057635-25057654 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTTTGTTTTGGT+TGG | + | chr5_2:25056996-25057015 | Msa0764680:intron | 20.0% |
| !! | AAGAATAAATATTACCGTAT+CGG | - | chr5_2:25057228-25057247 | None:intergenic | 20.0% |
| !!! | TTAATGTTTTTTGTTTTGGT+TGG | + | chr5_2:25056996-25057015 | Msa0764680:intron | 20.0% |
| !! | AAGAATAAATATTACCGTAT+CGG | - | chr5_2:25057228-25057247 | None:intergenic | 20.0% |
| !!! | GAAAAAAGCATCATGATTTT+TGG | + | chr5_2:25056704-25056723 | Msa0764680:CDS | 25.0% |
| !! | CTATTTCGTTTTACTATAAG+AGG | + | chr5_2:25057857-25057876 | Msa0764680:intron | 25.0% |
| ! | ATGAGGTTATGTTAATTGAT+AGG | - | chr5_2:25057893-25057912 | None:intergenic | 25.0% |
| ! | TATCAATTAACATAACCTCA+TGG | + | chr5_2:25057892-25057911 | Msa0764680:intron | 25.0% |
| !! | TCATTAATGTAATTTTGCCT+TGG | + | chr5_2:25058063-25058082 | Msa0764680:intron | 25.0% |
| !!! | TGCCTTGGATTATTTATTTT+AGG | + | chr5_2:25058078-25058097 | Msa0764680:intron | 25.0% |
| ! | CACCTAAAATAAATAATCCA+AGG | - | chr5_2:25058083-25058102 | None:intergenic | 25.0% |
| !!! | GGATTATTTATTTTAGGTGA+TGG | + | chr5_2:25058084-25058103 | Msa0764680:intron | 25.0% |
| !!! | GAAAAAAGCATCATGATTTT+TGG | + | chr5_2:25056704-25056723 | Msa0764680:CDS | 25.0% |
| !! | CTATTTCGTTTTACTATAAG+AGG | + | chr5_2:25057857-25057876 | Msa0764680:intron | 25.0% |
| ! | ATGAGGTTATGTTAATTGAT+AGG | - | chr5_2:25057893-25057912 | None:intergenic | 25.0% |
| ! | TATCAATTAACATAACCTCA+TGG | + | chr5_2:25057892-25057911 | Msa0764680:intron | 25.0% |
| !! | TCATTAATGTAATTTTGCCT+TGG | + | chr5_2:25058063-25058082 | Msa0764680:intron | 25.0% |
| !!! | TGCCTTGGATTATTTATTTT+AGG | + | chr5_2:25058078-25058097 | Msa0764680:intron | 25.0% |
| ! | CACCTAAAATAAATAATCCA+AGG | - | chr5_2:25058083-25058102 | None:intergenic | 25.0% |
| !!! | GGATTATTTATTTTAGGTGA+TGG | + | chr5_2:25058084-25058103 | Msa0764680:intron | 25.0% |
| !! | TTTTCTGAAAGGATTGTTGA+TGG | - | chr5_2:25056792-25056811 | None:intergenic | 30.0% |
| TTGTTCATATTGAGAAAGGT+TGG | - | chr5_2:25056828-25056847 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTTTTGGTTGGTGA+AGG | + | chr5_2:25057002-25057021 | Msa0764680:intron | 30.0% |
| CTAGAAACTTTGTGAAAACA+AGG | + | chr5_2:25057105-25057124 | Msa0764680:CDS | 30.0% | |
| AATAAATATTACCGTATCGG+TGG | - | chr5_2:25057225-25057244 | None:intergenic | 30.0% | |
| TGTCCGGAGATAATATATTT+GGG | - | chr5_2:25057951-25057970 | None:intergenic | 30.0% | |
| ATGTCCGGAGATAATATATT+TGG | - | chr5_2:25057952-25057971 | None:intergenic | 30.0% | |
| TCATCTTCCATTATAGTTGA+AGG | - | chr5_2:25058112-25058131 | None:intergenic | 30.0% | |
| ATAATGTGAAGATGGATATG+CGG | - | chr5_2:25058182-25058201 | None:intergenic | 30.0% | |
| !! | TTTTCTGAAAGGATTGTTGA+TGG | - | chr5_2:25056792-25056811 | None:intergenic | 30.0% |
| TTGTTCATATTGAGAAAGGT+TGG | - | chr5_2:25056828-25056847 | None:intergenic | 30.0% | |
| !!! | TTTTTTGTTTTGGTTGGTGA+AGG | + | chr5_2:25057002-25057021 | Msa0764680:intron | 30.0% |
| CTAGAAACTTTGTGAAAACA+AGG | + | chr5_2:25057105-25057124 | Msa0764680:CDS | 30.0% | |
| AATAAATATTACCGTATCGG+TGG | - | chr5_2:25057225-25057244 | None:intergenic | 30.0% | |
| TGTCCGGAGATAATATATTT+GGG | - | chr5_2:25057951-25057970 | None:intergenic | 30.0% | |
| ATGTCCGGAGATAATATATT+TGG | - | chr5_2:25057952-25057971 | None:intergenic | 30.0% | |
| TCATCTTCCATTATAGTTGA+AGG | - | chr5_2:25058112-25058131 | None:intergenic | 30.0% | |
| ATAATGTGAAGATGGATATG+CGG | - | chr5_2:25058182-25058201 | None:intergenic | 30.0% | |
| !!! | ATGCTAGCACTTTTTCTGAA+AGG | - | chr5_2:25056803-25056822 | None:intergenic | 35.0% |
| GTGGTTGTTCATATTGAGAA+AGG | - | chr5_2:25056832-25056851 | None:intergenic | 35.0% | |
| AGAACACAAGTTGTTCTTGT+TGG | + | chr5_2:25057043-25057062 | Msa0764680:CDS | 35.0% | |
| GAACACAAGTTGTTCTTGTT+GGG | + | chr5_2:25057044-25057063 | Msa0764680:CDS | 35.0% | |
| AACACAAGTTGTTCTTGTTG+GGG | + | chr5_2:25057045-25057064 | Msa0764680:CDS | 35.0% | |
| CTTTGATATTACCACCGATA+CGG | + | chr5_2:25057211-25057230 | Msa0764680:CDS | 35.0% | |
| AAGTACAAAAAGTCACCATG+AGG | - | chr5_2:25057910-25057929 | None:intergenic | 35.0% | |
| ! | GATAATATATTTGGGACGGA+GGG | - | chr5_2:25057943-25057962 | None:intergenic | 35.0% |
| ! | AGATAATATATTTGGGACGG+AGG | - | chr5_2:25057944-25057963 | None:intergenic | 35.0% |
| CGGAGATAATATATTTGGGA+CGG | - | chr5_2:25057947-25057966 | None:intergenic | 35.0% | |
| CGTCCCAAATATATTATCTC+CGG | + | chr5_2:25057945-25057964 | Msa0764680:intron | 35.0% | |
| CGTTCGCAAAAATATATGTC+CGG | - | chr5_2:25057967-25057986 | None:intergenic | 35.0% | |
| GATGGAACCTTCAACTATAA+TGG | + | chr5_2:25058102-25058121 | Msa0764680:CDS | 35.0% | |
| TCAATTTCAGCAAGAAACAG+TGG | + | chr5_2:25058132-25058151 | Msa0764680:CDS | 35.0% | |
| GCATATCCATCTTCACATTA+TGG | + | chr5_2:25058181-25058200 | Msa0764680:CDS | 35.0% | |
| TATCCATCTTCACATTATGG+CGG | + | chr5_2:25058184-25058203 | Msa0764680:CDS | 35.0% | |
| ! | AGATTAGCCATCTTAGAAGA+AGG | - | chr5_2:25058313-25058332 | None:intergenic | 35.0% |
| AGCTTCAATGACAATGGAAA+AGG | - | chr5_2:25058376-25058395 | None:intergenic | 35.0% | |
| !!! | ATCATCGCCTTTTAAAACCA+TGG | + | chr5_2:25058462-25058481 | Msa0764680:CDS | 35.0% |
| !!! | ATGCTAGCACTTTTTCTGAA+AGG | - | chr5_2:25056803-25056822 | None:intergenic | 35.0% |
| GTGGTTGTTCATATTGAGAA+AGG | - | chr5_2:25056832-25056851 | None:intergenic | 35.0% | |
| AGAACACAAGTTGTTCTTGT+TGG | + | chr5_2:25057043-25057062 | Msa0764680:CDS | 35.0% | |
| GAACACAAGTTGTTCTTGTT+GGG | + | chr5_2:25057044-25057063 | Msa0764680:CDS | 35.0% | |
| AACACAAGTTGTTCTTGTTG+GGG | + | chr5_2:25057045-25057064 | Msa0764680:CDS | 35.0% | |
| CTTTGATATTACCACCGATA+CGG | + | chr5_2:25057211-25057230 | Msa0764680:CDS | 35.0% | |
| AAGTACAAAAAGTCACCATG+AGG | - | chr5_2:25057910-25057929 | None:intergenic | 35.0% | |
| ! | GATAATATATTTGGGACGGA+GGG | - | chr5_2:25057943-25057962 | None:intergenic | 35.0% |
| ! | AGATAATATATTTGGGACGG+AGG | - | chr5_2:25057944-25057963 | None:intergenic | 35.0% |
| CGGAGATAATATATTTGGGA+CGG | - | chr5_2:25057947-25057966 | None:intergenic | 35.0% | |
| CGTCCCAAATATATTATCTC+CGG | + | chr5_2:25057945-25057964 | Msa0764680:intron | 35.0% | |
| CGTTCGCAAAAATATATGTC+CGG | - | chr5_2:25057967-25057986 | None:intergenic | 35.0% | |
| GATGGAACCTTCAACTATAA+TGG | + | chr5_2:25058102-25058121 | Msa0764680:CDS | 35.0% | |
| TCAATTTCAGCAAGAAACAG+TGG | + | chr5_2:25058132-25058151 | Msa0764680:CDS | 35.0% | |
| GCATATCCATCTTCACATTA+TGG | + | chr5_2:25058181-25058200 | Msa0764680:CDS | 35.0% | |
| TATCCATCTTCACATTATGG+CGG | + | chr5_2:25058184-25058203 | Msa0764680:CDS | 35.0% | |
| ! | AGATTAGCCATCTTAGAAGA+AGG | - | chr5_2:25058313-25058332 | None:intergenic | 35.0% |
| AGCTTCAATGACAATGGAAA+AGG | - | chr5_2:25058376-25058395 | None:intergenic | 35.0% | |
| !!! | ATCATCGCCTTTTAAAACCA+TGG | + | chr5_2:25058462-25058481 | Msa0764680:CDS | 35.0% |
| !!! | ATTTTTGGTGTTCGACTCAC+CGG | + | chr5_2:25056719-25056738 | Msa0764680:CDS | 40.0% |
| !! | AGGATTGTTGATGGTGTTGT+TGG | - | chr5_2:25056783-25056802 | None:intergenic | 40.0% |
| GATGTCATCGGATACATAAC+CGG | - | chr5_2:25056882-25056901 | None:intergenic | 40.0% | |
| !! | AACAGGTTGGTAAAGGTGAT+TGG | + | chr5_2:25057072-25057091 | Msa0764680:CDS | 40.0% |
| TATCAAAGAGACTGGATCTC+CGG | - | chr5_2:25057199-25057218 | None:intergenic | 40.0% | |
| GGTGGTAATATCAAAGAGAC+TGG | - | chr5_2:25057207-25057226 | None:intergenic | 40.0% | |
| ACTCTTTCAGCACTCATTAC+CGG | - | chr5_2:25058256-25058275 | None:intergenic | 40.0% | |
| TTAGCCATCTTAGAAGAAGG+AGG | - | chr5_2:25058310-25058329 | None:intergenic | 40.0% | |
| !!! | CTTTTAAAACCATGGCTGCA+GGG | + | chr5_2:25058470-25058489 | Msa0764680:CDS | 40.0% |
| !!! | ATTTTTGGTGTTCGACTCAC+CGG | + | chr5_2:25056719-25056738 | Msa0764680:CDS | 40.0% |
| !! | AGGATTGTTGATGGTGTTGT+TGG | - | chr5_2:25056783-25056802 | None:intergenic | 40.0% |
| GATGTCATCGGATACATAAC+CGG | - | chr5_2:25056882-25056901 | None:intergenic | 40.0% | |
| !! | AACAGGTTGGTAAAGGTGAT+TGG | + | chr5_2:25057072-25057091 | Msa0764680:CDS | 40.0% |
| TATCAAAGAGACTGGATCTC+CGG | - | chr5_2:25057199-25057218 | None:intergenic | 40.0% | |
| GGTGGTAATATCAAAGAGAC+TGG | - | chr5_2:25057207-25057226 | None:intergenic | 40.0% | |
| ACTCTTTCAGCACTCATTAC+CGG | - | chr5_2:25058256-25058275 | None:intergenic | 40.0% | |
| TTAGCCATCTTAGAAGAAGG+AGG | - | chr5_2:25058310-25058329 | None:intergenic | 40.0% | |
| !!! | CTTTTAAAACCATGGCTGCA+GGG | + | chr5_2:25058470-25058489 | Msa0764680:CDS | 40.0% |
| AACTCGAGAACATGCAACGA+CGG | + | chr5_2:25056674-25056693 | Msa0764680:CDS | 45.0% | |
| !! | GTTGATGGTGTTGTTGGTTG+TGG | - | chr5_2:25056777-25056796 | None:intergenic | 45.0% |
| TTGTGTTCTTCCTCTGTCCA+AGG | - | chr5_2:25057032-25057051 | None:intergenic | 45.0% | |
| GTTCTTGTTGGGGTTACAAC+AGG | + | chr5_2:25057055-25057074 | Msa0764680:CDS | 45.0% | |
| TTGTTGGGGTTACAACAGGT+TGG | + | chr5_2:25057059-25057078 | Msa0764680:CDS | 45.0% | |
| !! | GGGTTACAACAGGTTGGTAA+AGG | + | chr5_2:25057065-25057084 | Msa0764680:CDS | 45.0% |
| ! | GTTGGTAAAGGTGATTGGAG+AGG | + | chr5_2:25057077-25057096 | Msa0764680:CDS | 45.0% |
| GAAAACAAGGACACCAACTC+AGG | + | chr5_2:25057118-25057137 | Msa0764680:CDS | 45.0% | |
| ATGTGAAGATGGATATGCGG+CGG | - | chr5_2:25058179-25058198 | None:intergenic | 45.0% | |
| ATGCCGCCATAATGTGAAGA+TGG | - | chr5_2:25058190-25058209 | None:intergenic | 45.0% | |
| CTCATTACCGGCAATGTTAC+CGG | - | chr5_2:25058244-25058263 | None:intergenic | 45.0% | |
| !! | GGTAATGAGTGCTGAAAGAG+TGG | + | chr5_2:25058255-25058274 | Msa0764680:CDS | 45.0% |
| AAAGAGTGGCCAAGCCAATT+AGG | + | chr5_2:25058269-25058288 | Msa0764680:CDS | 45.0% | |
| !! | AGCATTGGTGTTGGCCTAAT+TGG | - | chr5_2:25058286-25058305 | None:intergenic | 45.0% |
| TTAGAAGAAGGAGGCAGCAT+TGG | - | chr5_2:25058301-25058320 | None:intergenic | 45.0% | |
| TGACAATGGAAAAGGCTCGA+TGG | - | chr5_2:25058368-25058387 | None:intergenic | 45.0% | |
| GGTTGCAGCTTCAATGACAA+TGG | - | chr5_2:25058382-25058401 | None:intergenic | 45.0% | |
| GTCATTGAAGCTGCAACCTT+CGG | + | chr5_2:25058384-25058403 | Msa0764680:CDS | 45.0% | |
| TCCATCGGAAGATCATTCAC+CGG | + | chr5_2:25058408-25058427 | Msa0764680:CDS | 45.0% | |
| !!! | CCTGCAGCCATGGTTTTAAA+AGG | - | chr5_2:25058472-25058491 | None:intergenic | 45.0% |
| !!! | CCTTTTAAAACCATGGCTGC+AGG | + | chr5_2:25058469-25058488 | Msa0764680:CDS | 45.0% |
| ATTATACTTCCCTGCAGCCA+TGG | - | chr5_2:25058482-25058501 | None:intergenic | 45.0% | |
| ! | ATGGCTGCAGGGAAGTATAA+TGG | + | chr5_2:25058481-25058500 | Msa0764680:CDS | 45.0% |
| ! | CTGCAGGGAAGTATAATGGT+GGG | + | chr5_2:25058485-25058504 | Msa0764680:CDS | 45.0% |
| ! | TGCAGGGAAGTATAATGGTG+GGG | + | chr5_2:25058486-25058505 | Msa0764680:CDS | 45.0% |
| AACTCGAGAACATGCAACGA+CGG | + | chr5_2:25056674-25056693 | Msa0764680:CDS | 45.0% | |
| !! | GTTGATGGTGTTGTTGGTTG+TGG | - | chr5_2:25056777-25056796 | None:intergenic | 45.0% |
| TTGTGTTCTTCCTCTGTCCA+AGG | - | chr5_2:25057032-25057051 | None:intergenic | 45.0% | |
| GTTCTTGTTGGGGTTACAAC+AGG | + | chr5_2:25057055-25057074 | Msa0764680:CDS | 45.0% | |
| TTGTTGGGGTTACAACAGGT+TGG | + | chr5_2:25057059-25057078 | Msa0764680:CDS | 45.0% | |
| !! | GGGTTACAACAGGTTGGTAA+AGG | + | chr5_2:25057065-25057084 | Msa0764680:CDS | 45.0% |
| ! | GTTGGTAAAGGTGATTGGAG+AGG | + | chr5_2:25057077-25057096 | Msa0764680:CDS | 45.0% |
| GAAAACAAGGACACCAACTC+AGG | + | chr5_2:25057118-25057137 | Msa0764680:CDS | 45.0% | |
| ATGTGAAGATGGATATGCGG+CGG | - | chr5_2:25058179-25058198 | None:intergenic | 45.0% | |
| ATGCCGCCATAATGTGAAGA+TGG | - | chr5_2:25058190-25058209 | None:intergenic | 45.0% | |
| CTCATTACCGGCAATGTTAC+CGG | - | chr5_2:25058244-25058263 | None:intergenic | 45.0% | |
| !! | GGTAATGAGTGCTGAAAGAG+TGG | + | chr5_2:25058255-25058274 | Msa0764680:CDS | 45.0% |
| AAAGAGTGGCCAAGCCAATT+AGG | + | chr5_2:25058269-25058288 | Msa0764680:CDS | 45.0% | |
| !! | AGCATTGGTGTTGGCCTAAT+TGG | - | chr5_2:25058286-25058305 | None:intergenic | 45.0% |
| TTAGAAGAAGGAGGCAGCAT+TGG | - | chr5_2:25058301-25058320 | None:intergenic | 45.0% | |
| TGACAATGGAAAAGGCTCGA+TGG | - | chr5_2:25058368-25058387 | None:intergenic | 45.0% | |
| GGTTGCAGCTTCAATGACAA+TGG | - | chr5_2:25058382-25058401 | None:intergenic | 45.0% | |
| GTCATTGAAGCTGCAACCTT+CGG | + | chr5_2:25058384-25058403 | Msa0764680:CDS | 45.0% | |
| TCCATCGGAAGATCATTCAC+CGG | + | chr5_2:25058408-25058427 | Msa0764680:CDS | 45.0% | |
| !!! | CCTGCAGCCATGGTTTTAAA+AGG | - | chr5_2:25058472-25058491 | None:intergenic | 45.0% |
| !!! | CCTTTTAAAACCATGGCTGC+AGG | + | chr5_2:25058469-25058488 | Msa0764680:CDS | 45.0% |
| ATTATACTTCCCTGCAGCCA+TGG | - | chr5_2:25058482-25058501 | None:intergenic | 45.0% | |
| ! | ATGGCTGCAGGGAAGTATAA+TGG | + | chr5_2:25058481-25058500 | Msa0764680:CDS | 45.0% |
| ! | CTGCAGGGAAGTATAATGGT+GGG | + | chr5_2:25058485-25058504 | Msa0764680:CDS | 45.0% |
| ! | TGCAGGGAAGTATAATGGTG+GGG | + | chr5_2:25058486-25058505 | Msa0764680:CDS | 45.0% |
| ! | CGTTGCATGTTCTCGAGTTG+TGG | - | chr5_2:25056673-25056692 | None:intergenic | 50.0% |
| !! | GATGGTGTTGTTGGTTGTGG+TGG | - | chr5_2:25056774-25056793 | None:intergenic | 50.0% |
| ! | AGAGGCGTGAACGATGTCAT+CGG | - | chr5_2:25056894-25056913 | None:intergenic | 50.0% |
| !! | TGGTTGGTGAAGGTGTTCCT+TGG | + | chr5_2:25057012-25057031 | Msa0764680:intron | 50.0% |
| !! | TGAAGGTGTTCCTTGGACAG+AGG | + | chr5_2:25057019-25057038 | Msa0764680:intron | 50.0% |
| ! | GCATGACTTGCAACCTGAGT+TGG | - | chr5_2:25057134-25057153 | None:intergenic | 50.0% |
| TGTGAAGATGGATATGCGGC+GGG | - | chr5_2:25058178-25058197 | None:intergenic | 50.0% | |
| ! | ACACCTTTTCCGATGGGTCT+CGG | + | chr5_2:25058217-25058236 | Msa0764680:CDS | 50.0% |
| !! | TGGTGTTGGCCTAATTGGCT+TGG | - | chr5_2:25058281-25058300 | None:intergenic | 50.0% |
| ! | GCTGCCTCCTTCTTCTAAGA+TGG | + | chr5_2:25058303-25058322 | Msa0764680:CDS | 50.0% |
| TGATCTTCCGATGGAACCGA+AGG | - | chr5_2:25058403-25058422 | None:intergenic | 50.0% | |
| TCCGGTGAATGATCTTCCGA+TGG | - | chr5_2:25058412-25058431 | None:intergenic | 50.0% | |
| !! | GACGAATGGCTGCTACTTTC+CGG | - | chr5_2:25058430-25058449 | None:intergenic | 50.0% |
| TAGCAGCCATTCGTCGTCAT+CGG | + | chr5_2:25058435-25058454 | Msa0764680:CDS | 50.0% | |
| ATGAAGCCGATGACGACGAA+TGG | - | chr5_2:25058444-25058463 | None:intergenic | 50.0% | |
| ! | GCTGCAGGGAAGTATAATGG+TGG | + | chr5_2:25058484-25058503 | Msa0764680:CDS | 50.0% |
| ! | GCAGGGAAGTATAATGGTGG+GGG | + | chr5_2:25058487-25058506 | Msa0764680:CDS | 50.0% |
| ! | GGAAGTATAATGGTGGGGGT+GGG | + | chr5_2:25058491-25058510 | Msa0764680:CDS | 50.0% |
| ! | GAAGTATAATGGTGGGGGTG+GGG | + | chr5_2:25058492-25058511 | Msa0764680:CDS | 50.0% |
| ! | CGTTGCATGTTCTCGAGTTG+TGG | - | chr5_2:25056673-25056692 | None:intergenic | 50.0% |
| !! | GATGGTGTTGTTGGTTGTGG+TGG | - | chr5_2:25056774-25056793 | None:intergenic | 50.0% |
| ! | AGAGGCGTGAACGATGTCAT+CGG | - | chr5_2:25056894-25056913 | None:intergenic | 50.0% |
| !! | TGGTTGGTGAAGGTGTTCCT+TGG | + | chr5_2:25057012-25057031 | Msa0764680:intron | 50.0% |
| !! | TGAAGGTGTTCCTTGGACAG+AGG | + | chr5_2:25057019-25057038 | Msa0764680:intron | 50.0% |
| ! | GCATGACTTGCAACCTGAGT+TGG | - | chr5_2:25057134-25057153 | None:intergenic | 50.0% |
| TGTGAAGATGGATATGCGGC+GGG | - | chr5_2:25058178-25058197 | None:intergenic | 50.0% | |
| ! | ACACCTTTTCCGATGGGTCT+CGG | + | chr5_2:25058217-25058236 | Msa0764680:CDS | 50.0% |
| !! | TGGTGTTGGCCTAATTGGCT+TGG | - | chr5_2:25058281-25058300 | None:intergenic | 50.0% |
| ! | GCTGCCTCCTTCTTCTAAGA+TGG | + | chr5_2:25058303-25058322 | Msa0764680:CDS | 50.0% |
| TGATCTTCCGATGGAACCGA+AGG | - | chr5_2:25058403-25058422 | None:intergenic | 50.0% | |
| TCCGGTGAATGATCTTCCGA+TGG | - | chr5_2:25058412-25058431 | None:intergenic | 50.0% | |
| !! | GACGAATGGCTGCTACTTTC+CGG | - | chr5_2:25058430-25058449 | None:intergenic | 50.0% |
| TAGCAGCCATTCGTCGTCAT+CGG | + | chr5_2:25058435-25058454 | Msa0764680:CDS | 50.0% | |
| ATGAAGCCGATGACGACGAA+TGG | - | chr5_2:25058444-25058463 | None:intergenic | 50.0% | |
| ! | GCTGCAGGGAAGTATAATGG+TGG | + | chr5_2:25058484-25058503 | Msa0764680:CDS | 50.0% |
| ! | GCAGGGAAGTATAATGGTGG+GGG | + | chr5_2:25058487-25058506 | Msa0764680:CDS | 50.0% |
| ! | GGAAGTATAATGGTGGGGGT+GGG | + | chr5_2:25058491-25058510 | Msa0764680:CDS | 50.0% |
| ! | GAAGTATAATGGTGGGGGTG+GGG | + | chr5_2:25058492-25058511 | Msa0764680:CDS | 50.0% |
| TGCTCACAGTGCGGCAACAA+CGG | + | chr5_2:25056647-25056666 | Msa0764680:CDS | 55.0% | |
| TCGAGAACATGCAACGACGG+TGG | + | chr5_2:25056677-25056696 | Msa0764680:CDS | 55.0% | |
| !! | TTTGGTGTTCGACTCACCGG+AGG | + | chr5_2:25056722-25056741 | Msa0764680:CDS | 55.0% |
| ! | GTTGGGGTGGTTGTTTCCTC+CGG | - | chr5_2:25056741-25056760 | None:intergenic | 55.0% |
| !! | GTTGTTGGTTGTGGTGGTGG+TGG | - | chr5_2:25056768-25056787 | None:intergenic | 55.0% |
| !! | GGTGTTGTTGGTTGTGGTGG+TGG | - | chr5_2:25056771-25056790 | None:intergenic | 55.0% |
| GGGTTGGAATCTTGTGGAGG+TGG | - | chr5_2:25056851-25056870 | None:intergenic | 55.0% | |
| TCCACAAGATTCCAACCCCG+CGG | + | chr5_2:25056853-25056872 | Msa0764680:CDS | 55.0% | |
| ATACATAACCGGCATCCGCG+GGG | - | chr5_2:25056871-25056890 | None:intergenic | 55.0% | |
| GATACATAACCGGCATCCGC+GGG | - | chr5_2:25056872-25056891 | None:intergenic | 55.0% | |
| GGATACATAACCGGCATCCG+CGG | - | chr5_2:25056873-25056892 | None:intergenic | 55.0% | |
| GATGACATCGTTCACGCCTC+TGG | + | chr5_2:25056893-25056912 | Msa0764680:CDS | 55.0% | |
| CGATCCAGAGAACGCAAACG+AGG | + | chr5_2:25056917-25056936 | Msa0764680:CDS | 55.0% | |
| CTGACCTCGTTTGCGTTCTC+TGG | - | chr5_2:25056924-25056943 | None:intergenic | 55.0% | |
| CAAAGAGACTGGATCTCCGG+CGG | - | chr5_2:25057196-25057215 | None:intergenic | 55.0% | |
| TGAAGATGGATATGCGGCGG+GGG | - | chr5_2:25058176-25058195 | None:intergenic | 55.0% | |
| GTGAAGATGGATATGCGGCG+GGG | - | chr5_2:25058177-25058196 | None:intergenic | 55.0% | |
| TCACATTATGGCGGCATCCC+TGG | + | chr5_2:25058193-25058212 | Msa0764680:CDS | 55.0% | |
| CACATTATGGCGGCATCCCT+GGG | + | chr5_2:25058194-25058213 | Msa0764680:CDS | 55.0% | |
| !! | CCATCGGAAAAGGTGTCCCA+GGG | - | chr5_2:25058213-25058232 | None:intergenic | 55.0% |
| ! | CCTGGGACACCTTTTCCGAT+GGG | + | chr5_2:25058211-25058230 | Msa0764680:CDS | 55.0% |
| ! | TTTTCCGATGGGTCTCGGTC+CGG | + | chr5_2:25058222-25058241 | Msa0764680:CDS | 55.0% |
| TCTCGGTCCGGTAACATTGC+CGG | + | chr5_2:25058234-25058253 | Msa0764680:CDS | 55.0% | |
| !! | GAAGGAGGCAGCATTGGTGT+TGG | - | chr5_2:25058295-25058314 | None:intergenic | 55.0% |
| GCTGCAACCTTCGGTTCCAT+CGG | + | chr5_2:25058393-25058412 | Msa0764680:CDS | 55.0% | |
| ! | GGGAAGTATAATGGTGGGGG+TGG | + | chr5_2:25058490-25058509 | Msa0764680:CDS | 55.0% |
| TGCTCACAGTGCGGCAACAA+CGG | + | chr5_2:25056647-25056666 | Msa0764680:CDS | 55.0% | |
| TCGAGAACATGCAACGACGG+TGG | + | chr5_2:25056677-25056696 | Msa0764680:CDS | 55.0% | |
| !! | TTTGGTGTTCGACTCACCGG+AGG | + | chr5_2:25056722-25056741 | Msa0764680:CDS | 55.0% |
| ! | GTTGGGGTGGTTGTTTCCTC+CGG | - | chr5_2:25056741-25056760 | None:intergenic | 55.0% |
| !! | GTTGTTGGTTGTGGTGGTGG+TGG | - | chr5_2:25056768-25056787 | None:intergenic | 55.0% |
| !! | GGTGTTGTTGGTTGTGGTGG+TGG | - | chr5_2:25056771-25056790 | None:intergenic | 55.0% |
| GGGTTGGAATCTTGTGGAGG+TGG | - | chr5_2:25056851-25056870 | None:intergenic | 55.0% | |
| TCCACAAGATTCCAACCCCG+CGG | + | chr5_2:25056853-25056872 | Msa0764680:CDS | 55.0% | |
| ATACATAACCGGCATCCGCG+GGG | - | chr5_2:25056871-25056890 | None:intergenic | 55.0% | |
| GATACATAACCGGCATCCGC+GGG | - | chr5_2:25056872-25056891 | None:intergenic | 55.0% | |
| GGATACATAACCGGCATCCG+CGG | - | chr5_2:25056873-25056892 | None:intergenic | 55.0% | |
| GATGACATCGTTCACGCCTC+TGG | + | chr5_2:25056893-25056912 | Msa0764680:CDS | 55.0% | |
| CGATCCAGAGAACGCAAACG+AGG | + | chr5_2:25056917-25056936 | Msa0764680:CDS | 55.0% | |
| CTGACCTCGTTTGCGTTCTC+TGG | - | chr5_2:25056924-25056943 | None:intergenic | 55.0% | |
| CAAAGAGACTGGATCTCCGG+CGG | - | chr5_2:25057196-25057215 | None:intergenic | 55.0% | |
| TGAAGATGGATATGCGGCGG+GGG | - | chr5_2:25058176-25058195 | None:intergenic | 55.0% | |
| GTGAAGATGGATATGCGGCG+GGG | - | chr5_2:25058177-25058196 | None:intergenic | 55.0% | |
| TCACATTATGGCGGCATCCC+TGG | + | chr5_2:25058193-25058212 | Msa0764680:CDS | 55.0% | |
| CACATTATGGCGGCATCCCT+GGG | + | chr5_2:25058194-25058213 | Msa0764680:CDS | 55.0% | |
| !! | CCATCGGAAAAGGTGTCCCA+GGG | - | chr5_2:25058213-25058232 | None:intergenic | 55.0% |
| ! | CCTGGGACACCTTTTCCGAT+GGG | + | chr5_2:25058211-25058230 | Msa0764680:CDS | 55.0% |
| ! | TTTTCCGATGGGTCTCGGTC+CGG | + | chr5_2:25058222-25058241 | Msa0764680:CDS | 55.0% |
| TCTCGGTCCGGTAACATTGC+CGG | + | chr5_2:25058234-25058253 | Msa0764680:CDS | 55.0% | |
| !! | GAAGGAGGCAGCATTGGTGT+TGG | - | chr5_2:25058295-25058314 | None:intergenic | 55.0% |
| GCTGCAACCTTCGGTTCCAT+CGG | + | chr5_2:25058393-25058412 | Msa0764680:CDS | 55.0% | |
| ! | GGGAAGTATAATGGTGGGGG+TGG | + | chr5_2:25058490-25058509 | Msa0764680:CDS | 55.0% |
| TCTCGCACGTGCTCACAGTG+CGG | + | chr5_2:25056638-25056657 | Msa0764680:CDS | 60.0% | |
| !! | TGGTGGTGGTGGTGGTGTTG+GGG | - | chr5_2:25056757-25056776 | None:intergenic | 60.0% |
| !! | GTGGTGGTGGTGGTGGTGTT+GGG | - | chr5_2:25056758-25056777 | None:intergenic | 60.0% |
| !! | TGTGGTGGTGGTGGTGGTGT+TGG | - | chr5_2:25056759-25056778 | None:intergenic | 60.0% |
| !! | GTTGGTTGTGGTGGTGGTGG+TGG | - | chr5_2:25056765-25056784 | None:intergenic | 60.0% |
| GCGGGGTTGGAATCTTGTGG+AGG | - | chr5_2:25056854-25056873 | None:intergenic | 60.0% | |
| TCCGCGGGGTTGGAATCTTG+TGG | - | chr5_2:25056857-25056876 | None:intergenic | 60.0% | |
| GCGTTCTCTGGATCGACCAG+AGG | - | chr5_2:25056912-25056931 | None:intergenic | 60.0% | |
| ! | GGTTCTGGTTATGACGGCGG+AGG | - | chr5_2:25057169-25057188 | None:intergenic | 60.0% |
| ! | GGCGGTTCTGGTTATGACGG+CGG | - | chr5_2:25057172-25057191 | None:intergenic | 60.0% |
| ! | GGCGGCGGTTCTGGTTATGA+CGG | - | chr5_2:25057175-25057194 | None:intergenic | 60.0% |
| ! | CCCTGGGACACCTTTTCCGA+TGG | + | chr5_2:25058210-25058229 | Msa0764680:CDS | 60.0% |
| !! | CCCATCGGAAAAGGTGTCCC+AGG | - | chr5_2:25058214-25058233 | None:intergenic | 60.0% |
| GGACCGAGACCCATCGGAAA+AGG | - | chr5_2:25058223-25058242 | None:intergenic | 60.0% | |
| GTTACCGGACCGAGACCCAT+CGG | - | chr5_2:25058229-25058248 | None:intergenic | 60.0% | |
| TCTCGCACGTGCTCACAGTG+CGG | + | chr5_2:25056638-25056657 | Msa0764680:CDS | 60.0% | |
| !! | TGGTGGTGGTGGTGGTGTTG+GGG | - | chr5_2:25056757-25056776 | None:intergenic | 60.0% |
| !! | GTGGTGGTGGTGGTGGTGTT+GGG | - | chr5_2:25056758-25056777 | None:intergenic | 60.0% |
| !! | TGTGGTGGTGGTGGTGGTGT+TGG | - | chr5_2:25056759-25056778 | None:intergenic | 60.0% |
| !! | GTTGGTTGTGGTGGTGGTGG+TGG | - | chr5_2:25056765-25056784 | None:intergenic | 60.0% |
| GCGGGGTTGGAATCTTGTGG+AGG | - | chr5_2:25056854-25056873 | None:intergenic | 60.0% | |
| TCCGCGGGGTTGGAATCTTG+TGG | - | chr5_2:25056857-25056876 | None:intergenic | 60.0% | |
| GCGTTCTCTGGATCGACCAG+AGG | - | chr5_2:25056912-25056931 | None:intergenic | 60.0% | |
| ! | GGTTCTGGTTATGACGGCGG+AGG | - | chr5_2:25057169-25057188 | None:intergenic | 60.0% |
| ! | GGCGGTTCTGGTTATGACGG+CGG | - | chr5_2:25057172-25057191 | None:intergenic | 60.0% |
| ! | GGCGGCGGTTCTGGTTATGA+CGG | - | chr5_2:25057175-25057194 | None:intergenic | 60.0% |
| ! | CCCTGGGACACCTTTTCCGA+TGG | + | chr5_2:25058210-25058229 | Msa0764680:CDS | 60.0% |
| !! | CCCATCGGAAAAGGTGTCCC+AGG | - | chr5_2:25058214-25058233 | None:intergenic | 60.0% |
| GGACCGAGACCCATCGGAAA+AGG | - | chr5_2:25058223-25058242 | None:intergenic | 60.0% | |
| GTTACCGGACCGAGACCCAT+CGG | - | chr5_2:25058229-25058248 | None:intergenic | 60.0% | |
| !! | TGGTGGTGGTGGTGTTGGGG+TGG | - | chr5_2:25056754-25056773 | None:intergenic | 65.0% |
| GATTCCAACCCCGCGGATGC+CGG | + | chr5_2:25056860-25056879 | Msa0764680:CDS | 65.0% | |
| ATAACCGGCATCCGCGGGGT+TGG | - | chr5_2:25056867-25056886 | None:intergenic | 65.0% | |
| ATAACCAGAACCGCCGCCGC+CGG | + | chr5_2:25057177-25057196 | Msa0764680:CDS | 65.0% | |
| AGAGACTGGATCTCCGGCGG+CGG | - | chr5_2:25057193-25057212 | None:intergenic | 65.0% | |
| GATGGATATGCGGCGGGGGT+TGG | - | chr5_2:25058172-25058191 | None:intergenic | 65.0% | |
| !! | TGGTGGTGGTGGTGTTGGGG+TGG | - | chr5_2:25056754-25056773 | None:intergenic | 65.0% |
| GATTCCAACCCCGCGGATGC+CGG | + | chr5_2:25056860-25056879 | Msa0764680:CDS | 65.0% | |
| ATAACCGGCATCCGCGGGGT+TGG | - | chr5_2:25056867-25056886 | None:intergenic | 65.0% | |
| ATAACCAGAACCGCCGCCGC+CGG | + | chr5_2:25057177-25057196 | Msa0764680:CDS | 65.0% | |
| AGAGACTGGATCTCCGGCGG+CGG | - | chr5_2:25057193-25057212 | None:intergenic | 65.0% | |
| GATGGATATGCGGCGGGGGT+TGG | - | chr5_2:25058172-25058191 | None:intergenic | 65.0% | |
| !! | TATGCGGCGGGGGTTGGTGG+TGG | - | chr5_2:25058166-25058185 | None:intergenic | 70.0% |
| GGATATGCGGCGGGGGTTGG+TGG | - | chr5_2:25058169-25058188 | None:intergenic | 70.0% | |
| !! | TATGCGGCGGGGGTTGGTGG+TGG | - | chr5_2:25058166-25058185 | None:intergenic | 70.0% |
| GGATATGCGGCGGGGGTTGG+TGG | - | chr5_2:25058169-25058188 | None:intergenic | 70.0% | |
| ATCTCCGGCGGCGGCGGTTC+TGG | - | chr5_2:25057184-25057203 | None:intergenic | 75.0% | |
| GACTGGATCTCCGGCGGCGG+CGG | - | chr5_2:25057190-25057209 | None:intergenic | 75.0% | |
| !! | GCGGGGGTTGGTGGTGGCAG+TGG | - | chr5_2:25058160-25058179 | None:intergenic | 75.0% |
| ATCTCCGGCGGCGGCGGTTC+TGG | - | chr5_2:25057184-25057203 | None:intergenic | 75.0% | |
| GACTGGATCTCCGGCGGCGG+CGG | - | chr5_2:25057190-25057209 | None:intergenic | 75.0% | |
| !! | GCGGGGGTTGGTGGTGGCAG+TGG | - | chr5_2:25058160-25058179 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 25056629 | 25058537 | 25056629 | ID=Msa0764680;Name=Msa0764680 |
| chr5_2 | mRNA | 25056629 | 25058537 | 25056629 | ID=Msa0764680-mRNA-1;Parent=Msa0764680;Name=Msa0764680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|318 |
| chr5_2 | exon | 25056629 | 25056938 | 25056629 | ID=Msa0764680-mRNA-1:exon:10093;Parent=Msa0764680-mRNA-1 |
| chr5_2 | exon | 25057024 | 25057232 | 25057024 | ID=Msa0764680-mRNA-1:exon:10094;Parent=Msa0764680-mRNA-1 |
| chr5_2 | exon | 25058100 | 25058537 | 25058100 | ID=Msa0764680-mRNA-1:exon:10095;Parent=Msa0764680-mRNA-1 |
| chr5_2 | CDS | 25056629 | 25056938 | 25056629 | ID=Msa0764680-mRNA-1:cds;Parent=Msa0764680-mRNA-1 |
| chr5_2 | CDS | 25057024 | 25057232 | 25057024 | ID=Msa0764680-mRNA-1:cds;Parent=Msa0764680-mRNA-1 |
| chr5_2 | CDS | 25058100 | 25058537 | 25058100 | ID=Msa0764680-mRNA-1:cds;Parent=Msa0764680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
