AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652190 MtrunA17_Chr5g0406961 99.746 393 1 0 1 393 52 444 0.0 818
Msa0652190 MtrunA17_Chr4g0045661 98.728 393 5 0 1 393 1 393 0.0 808
Msa0652190 MtrunA17_Chr1g0159321 72.271 339 90 2 59 393 52 390 0.0 526
Msa0652190 MtrunA17_Chr3g0126011 64.489 352 113 4 46 393 23 366 4.37e-169 477
Msa0652190 MtrunA17_Chr3g0125781 65.782 339 113 2 57 393 32 369 1.18e-168 476
Msa0652190 MtrunA17_Chr3g0125991 64.000 350 118 3 46 393 23 366 1.87e-166 470
Msa0652190 MtrunA17_Chr3g0125981 65.970 335 111 2 59 391 35 368 4.11e-165 467
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652190 AT2G43710.1 80.299 401 71 2 1 393 1 401 0.0 674
Msa0652190 AT2G43710.2 80.050 401 72 2 1 393 1 401 0.0 672
Msa0652190 AT3G02630.1 76.786 392 90 1 1 391 3 394 0.0 639
Msa0652190 AT5G16240.1 77.778 360 77 2 33 391 35 392 0.0 597
Msa0652190 AT3G02610.2 68.750 400 110 6 3 393 20 413 0.0 551
Msa0652190 AT3G02610.1 68.750 400 110 6 3 393 18 411 0.0 551
Msa0652190 AT5G16230.1 67.895 380 118 3 18 393 22 401 0.0 538
Msa0652190 AT3G02620.2 68.338 379 108 4 21 393 34 406 0.0 536
Msa0652190 AT3G02620.1 68.338 379 108 4 21 393 31 403 0.0 536
Msa0652190 AT1G43800.1 65.274 383 126 4 14 391 9 389 0.0 518
Msa0652190 AT5G16230.2 74.154 325 80 3 73 393 1 325 2.89e-180 504
Msa0652190 AT3G02620.3 73.394 327 81 3 73 393 1 327 3.61e-179 501

Find 168 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATCAAAATTGCCTTTAA+AGG 0.133216 4_3:-59913034 None:intergenic
TGCTGATATACTTGAGTTTC+TGG 0.154020 4_3:+59912547 Msa0652190:CDS
ATTTGAAAATTTCAATCTTC+TGG 0.154979 4_3:-59911451 None:intergenic
AAGAAGAAGATGAATGAATT+TGG 0.164360 4_3:-59909844 None:intergenic
GCCCTACTCCTTGGGCTATT+TGG 0.176215 4_3:+59911732 Msa0652190:CDS
TCCTCCAGCCTTCTGATTCT+TGG 0.181095 4_3:-59912650 None:intergenic
GATAAAGAAAATTTAATTAA+TGG 0.183957 4_3:+59912989 Msa0652190:three_prime_UTR
AACACTTCTCTACAGGTTTA+AGG 0.197232 4_3:-59911511 None:intergenic
GGTGGAAGCCATGACGAATT+TGG 0.227957 4_3:-59909964 None:intergenic
GCCGACATAACCGGACTTTC+AGG 0.282345 4_3:+59912587 Msa0652190:CDS
ATAGGCTACATTGGTATATT+AGG 0.295683 4_3:+59913154 Msa0652190:three_prime_UTR
GTGTGTGAAAAGTCCTTTAA+AGG 0.298067 4_3:+59913021 Msa0652190:three_prime_UTR
TTTGTTGCTTGTAGCTTCAT+TGG 0.306270 4_3:+59913130 Msa0652190:three_prime_UTR
CATTCAGTTGGATTCATGAT+AGG 0.310680 4_3:+59912711 Msa0652190:CDS
TACTTGAACATGCACTTCTC+TGG 0.313192 4_3:-59911411 None:intergenic
CCAAACTATGCTTAATACTT+TGG 0.323055 4_3:+59911682 Msa0652190:CDS
GTACTACTCTAAGCATATTA+AGG 0.323956 4_3:+59912737 Msa0652190:exon
AGGTTTAAGGTGAGTCAATA+AGG 0.334045 4_3:-59911498 None:intergenic
AGAAGAAGATGAATGAATTT+GGG 0.334625 4_3:-59909843 None:intergenic
CTGAGAGCCATTGTTGGATT+CGG 0.338634 4_3:-59909876 None:intergenic
AGATGATTACTTTGTTGTTC+TGG 0.344575 4_3:+59911622 Msa0652190:CDS
TTAAGCATAGTTTGGTAAGT+AGG 0.345744 4_3:-59911674 None:intergenic
TTTCAAATCGTTGGAGGGTT+GGG 0.350638 4_3:+59911466 Msa0652190:CDS
CCAAAGTATTAAGCATAGTT+TGG 0.352890 4_3:-59911682 None:intergenic
AATCCAACTGAATGCAAGTT+TGG 0.355409 4_3:-59912702 None:intergenic
TTTGAAAATTTCAATCTTCT+GGG 0.358302 4_3:-59911450 None:intergenic
GTGGAAGCCATGACGAATTT+GGG 0.375597 4_3:-59909963 None:intergenic
TGTTGTTCTGGTTGGAGATA+TGG 0.377751 4_3:+59911634 Msa0652190:CDS
GCTTGTAGCTTCATTGGAAT+AGG 0.383035 4_3:+59913136 Msa0652190:three_prime_UTR
AATCTTCCAGCAACTCTACT+TGG 0.387112 4_3:+59912769 Msa0652190:three_prime_UTR
TCTGTTAAGCATAAGCAATC+AGG 0.396112 4_3:+59912861 Msa0652190:three_prime_UTR
AAAGATAGTGGAAAAGCTAT+TGG 0.403395 4_3:+59912367 Msa0652190:CDS
CTCCTTCTCTCTCCCTCAAA+TGG 0.406762 4_3:+59909926 Msa0652190:CDS
ATTGCTCCAAGTAGAGTTGC+TGG 0.409276 4_3:-59912775 None:intergenic
CTGCCCGATCCTTCCTCAGA+TGG 0.416238 4_3:+59911551 Msa0652190:CDS
ATGGCTTCCACCCTCCGTTC+TGG 0.424747 4_3:+59909975 Msa0652190:CDS
CATCCAAACTTGCATTCAGT+TGG 0.428488 4_3:+59912699 Msa0652190:CDS
AGAACAACAAAGTAATCATC+TGG 0.438790 4_3:-59911620 None:intergenic
GATATACTTGAGTTTCTGGT+TGG 0.441237 4_3:+59912551 Msa0652190:CDS
TGGAAGGTGGCCGACATAAC+CGG 0.441892 4_3:+59912578 Msa0652190:CDS
AAGACAATTCAGTACCTGAT+TGG 0.443825 4_3:+59911848 Msa0652190:CDS
GGTTGCCAACACTTCTCTAC+AGG 0.448685 4_3:-59911518 None:intergenic
CAGGTGCCAGCCCTACTCCT+TGG 0.452555 4_3:+59911723 Msa0652190:CDS
TCACACCAACTCAAGTATTC+CGG 0.455637 4_3:-59913095 None:intergenic
TGTGTTTCCATGCGATATAA+AGG 0.456327 4_3:-59912252 None:intergenic
CAGCAGAATAGTTATCAAAC+AGG 0.457192 4_3:-59912487 None:intergenic
ATTCAGTACCTGATTGGGTC+TGG 0.458830 4_3:+59911854 Msa0652190:CDS
CAAGTAGTATTATTATTAAG+TGG 0.460431 4_3:+59909703 None:intergenic
ATATACTTGAGTTTCTGGTT+GGG 0.460993 4_3:+59912552 Msa0652190:CDS
GCCGCGTTCCTTAGCAAGCC+TGG 0.462444 4_3:-59912276 None:intergenic
AGAAGGAGGATGTTTGTGTA+GGG 0.463532 4_3:-59909911 None:intergenic
AGGTGCCAGCCCTACTCCTT+GGG 0.463988 4_3:+59911724 Msa0652190:CDS
TCCAGCCTTCTGATTCTTGG+TGG 0.465016 4_3:-59912647 None:intergenic
TCGTCCCTCACCTGAAAGTC+CGG 0.465890 4_3:-59912597 None:intergenic
TCTGCTGTTGCCCAGCGCAT+TGG 0.472536 4_3:+59912503 Msa0652190:CDS
GGAACGCGGCGATTTGAAGT+TGG 0.473114 4_3:+59912289 Msa0652190:CDS
AACAAGTATCTCTACTTGTC+CGG 0.474429 4_3:+59911800 Msa0652190:CDS
TCCAAATAGCCCAAGGAGTA+GGG 0.477229 4_3:-59911733 None:intergenic
CAGTGTAGACTCCAATGCGC+TGG 0.478141 4_3:-59912514 None:intergenic
GTGTAGATAAAGCCAAGGTA+AGG 0.480370 4_3:-59912209 None:intergenic
GTTTCTGGTTGGGAGGTGGA+AGG 0.480811 4_3:+59912562 Msa0652190:CDS
TACTTGAGTTTCTGGTTGGG+AGG 0.483685 4_3:+59912555 Msa0652190:CDS
TATCGCATGGAAACACAGCC+AGG 0.484282 4_3:+59912258 Msa0652190:CDS
GATGGAGTTCGTGATGAAAC+AGG 0.485012 4_3:+59911704 Msa0652190:CDS
AGACAATTCAGTACCTGATT+GGG 0.486001 4_3:+59911849 Msa0652190:CDS
AGAGGTTGAAAATATTAAGA+AGG 0.489403 4_3:+59911376 Msa0652190:CDS
TTACCATTCCAGACCCAATC+AGG 0.491308 4_3:-59911862 None:intergenic
AAGGCACAGGAGTATGTTTG+TGG 0.492271 4_3:+59912620 Msa0652190:CDS
ATGAATGAATTTGGGAATCA+CGG 0.492309 4_3:-59909835 None:intergenic
GAGAAGGAGGATGTTTGTGT+AGG 0.492943 4_3:-59909912 None:intergenic
ATTTGAGACTGGCCATTTGA+GGG 0.496342 4_3:-59909938 None:intergenic
CTCCTTGGGCTATTTGGACA+AGG 0.500836 4_3:+59911738 Msa0652190:CDS
TTATTCTTCATTGCGGTCAC+CGG 0.501935 4_3:+59913076 Msa0652190:three_prime_UTR
GATTTGAGACTGGCCATTTG+AGG 0.502339 4_3:-59909939 None:intergenic
CGTCTCGGCCATCATACATC+AGG 0.503492 4_3:-59912460 None:intergenic
TTGAGTTTCTGGTTGGGAGG+TGG 0.503890 4_3:+59912558 Msa0652190:CDS
TATCAAACAGGTTGTCGTCT+CGG 0.505744 4_3:-59912475 None:intergenic
GACTGCTTACACAAAGATAG+TGG 0.506240 4_3:+59912355 Msa0652190:CDS
CCATCATACATCAGGTGTGC+TGG 0.507354 4_3:-59912452 None:intergenic
GTTGCTCTGAGAGCCATTGT+TGG 0.509091 4_3:-59909882 None:intergenic
ATTCAGTTGGATTCATGATA+GGG 0.509293 4_3:+59912712 Msa0652190:CDS
ATCGTTGGAGGGTTGGGCTG+AGG 0.511095 4_3:+59911472 Msa0652190:CDS
AAAGCAATAACCGTTCCATC+AGG 0.515373 4_3:-59912398 None:intergenic
ACTATGCTTAATACTTTGGA+TGG 0.522020 4_3:+59911686 Msa0652190:CDS
CTGTTAAGCATAAGCAATCA+GGG 0.523483 4_3:+59912862 Msa0652190:three_prime_UTR
GGGCTATTTGGACAAGGGCA+TGG 0.524428 4_3:+59911744 Msa0652190:CDS
CAGAGGCAGGAATGGACAAT+GGG 0.526291 4_3:-59909735 None:intergenic
CTACACTTCATTTCAAGAGA+GGG 0.526696 4_3:+59912226 Msa0652190:CDS
TTCATTGGAATAGGCTACAT+TGG 0.527622 4_3:+59913145 Msa0652190:three_prime_UTR
AATCCATCTGAGGAAGGATC+GGG 0.533112 4_3:-59911554 None:intergenic
TTGTGAGGCAGAGGCAGGAA+TGG 0.535062 4_3:-59909743 None:intergenic
ATATCACTACTACAAGGAAA+AGG 0.537233 4_3:-59912925 None:intergenic
ACTTGAACATGCACTTCTCT+GGG 0.540588 4_3:-59911410 None:intergenic
GCCACCAAGAATCAGAAGGC+TGG 0.541195 4_3:+59912646 Msa0652190:CDS
GATTACTTTGTTGTTCTGGT+TGG 0.542691 4_3:+59911626 Msa0652190:CDS
AATAGCCCAAGGAGTAGGGC+TGG 0.546034 4_3:-59911729 None:intergenic
GTGTATTGTGAGGCAGAGGC+AGG 0.546332 4_3:-59909748 None:intergenic
AGGTGAGGGACGAAAGGCAC+AGG 0.547789 4_3:+59912607 Msa0652190:CDS
GAATTTGGGAGATTTGAGAC+TGG 0.549768 4_3:-59909949 None:intergenic
GAATCCATCTGAGGAAGGAT+CGG 0.550340 4_3:-59911555 None:intergenic
TTGAAAATTTCAATCTTCTG+GGG 0.552491 4_3:-59911449 None:intergenic
ACCTGAAAGTCCGGTTATGT+CGG 0.554587 4_3:-59912588 None:intergenic
GGCAGGAATGGACAATGGGA+AGG 0.555141 4_3:-59909731 None:intergenic
GTCCAAATAGCCCAAGGAGT+AGG 0.558680 4_3:-59911734 None:intergenic
TCTGGTTGGGAGGTGGAAGG+TGG 0.560034 4_3:+59912565 Msa0652190:CDS
AGGGCGACCTTTATATCGCA+TGG 0.560815 4_3:+59912245 Msa0652190:CDS
AAAATTTCAATCTTCTGGGG+AGG 0.561159 4_3:-59911446 None:intergenic
AGAGAAGTGTTGGCAACCAC+AGG 0.562702 4_3:+59911523 Msa0652190:CDS
TTGAAGTTGGCTCAGATCTG+TGG 0.563389 4_3:+59912302 Msa0652190:CDS
GTACCTGATTGGGTCTGGAA+TGG 0.566647 4_3:+59911859 Msa0652190:CDS
AGTGTAGACTCCAATGCGCT+GGG 0.573443 4_3:-59912513 None:intergenic
AAGTGAAGGAACTGAGAGAG+AGG 0.573671 4_3:+59911585 Msa0652190:CDS
AGGCACAGGAGTATGTTTGT+GGG 0.574102 4_3:+59912621 Msa0652190:CDS
AAGTATATCAGCATAGTCCT+TGG 0.575108 4_3:-59912537 None:intergenic
TTAAACCTGTAGAGAAGTGT+TGG 0.579690 4_3:+59911513 Msa0652190:CDS
TCTACACTTCATTTCAAGAG+AGG 0.581234 4_3:+59912225 Msa0652190:CDS
GGCTACATTGGTATATTAGG+AGG 0.582606 4_3:+59913157 Msa0652190:three_prime_UTR
GCAGGAATGGACAATGGGAA+GGG 0.583925 4_3:-59909730 None:intergenic
TTGTCTCATATCAACACGGC+CGG 0.584046 4_3:-59911819 None:intergenic
GCAGAGGCAGGAATGGACAA+TGG 0.584692 4_3:-59909736 None:intergenic
CTCATGGCGTTTCTCATCAG+AGG 0.584747 4_3:-59912333 None:intergenic
GAGGATGTTTGTGTAGGGAA+AGG 0.586561 4_3:-59909906 None:intergenic
TTGTCATTTATTCTTCATTG+CGG 0.586963 4_3:+59913069 Msa0652190:three_prime_UTR
GGCCATTTGAGGGAGAGAGA+AGG 0.589016 4_3:-59909928 None:intergenic
CATTTGAGGGAGAGAGAAGG+AGG 0.590783 4_3:-59909925 None:intergenic
TCTTCTGGGGAGGCATAGAG+TGG 0.595890 4_3:-59911436 None:intergenic
GAGAGCTTCAGCAAGAGCAA+AGG 0.595934 4_3:+59912673 Msa0652190:CDS
AAACACAGCCAGGCTTGCTA+AGG 0.597013 4_3:+59912268 Msa0652190:CDS
TGTAGATAAAGCCAAGGTAA+GGG 0.598444 4_3:-59912208 None:intergenic
CAAATCTCCCAAATTCGTCA+TGG 0.598894 4_3:+59909956 Msa0652190:CDS
AAATTGATGAATAGGATCCT+CGG 0.600687 4_3:+59912174 Msa0652190:intron
GGAGATTGATCCTGATGGAA+CGG 0.607380 4_3:+59912388 Msa0652190:CDS
ACTTTCAGGTGAGGGACGAA+AGG 0.610348 4_3:+59912601 Msa0652190:CDS
ATCGAATCCGAATCCAACAA+TGG 0.610743 4_3:+59909869 Msa0652190:exon
CCAGCACACCTGATGTATGA+TGG 0.611997 4_3:+59912452 Msa0652190:CDS
CTATTGGAGATTGATCCTGA+TGG 0.612852 4_3:+59912383 Msa0652190:CDS
GCCCTTGTCCAAATAGCCCA+AGG 0.616169 4_3:-59911740 None:intergenic
TCCTTGGGCTATTTGGACAA+GGG 0.616511 4_3:+59911739 Msa0652190:CDS
TCTTCGAATCCATCTGAGGA+AGG 0.617698 4_3:-59911560 None:intergenic
AATACTTGAGTTGGTGTGAG+TGG 0.621234 4_3:+59913099 Msa0652190:three_prime_UTR
GCCAGGCTTGCTAAGGAACG+CGG 0.621905 4_3:+59912275 Msa0652190:CDS
GTGAGTGTATTGTGAGGCAG+AGG 0.622093 4_3:-59909752 None:intergenic
AGTGAAGGAACTGAGAGAGA+GGG 0.623958 4_3:+59911586 Msa0652190:CDS
ACTGAGAATAGCCCTTACCT+TGG 0.627826 4_3:+59912197 Msa0652190:CDS
TGACTTGGAACCAGAACGGA+GGG 0.629360 4_3:-59909985 None:intergenic
GGTCACCGGAATACTTGAGT+TGG 0.629941 4_3:+59913090 Msa0652190:three_prime_UTR
ATGAAGTGTAGATAAAGCCA+AGG 0.630791 4_3:-59912214 None:intergenic
TTGCTCTTCGAATCCATCTG+AGG 0.631251 4_3:-59911564 None:intergenic
CAATTTGTCTCATATCAACA+CGG 0.633578 4_3:-59911823 None:intergenic
TCTTTGTGTAAGCAGTCTCA+TGG 0.635579 4_3:-59912349 None:intergenic
CTTGGAACCAGAACGGAGGG+TGG 0.638218 4_3:-59909982 None:intergenic
TGGATTCGAAGAGCAAGTGA+AGG 0.638840 4_3:+59911571 Msa0652190:CDS
CATTGGAGTCTACACTGCCA+AGG 0.641019 4_3:+59912520 Msa0652190:CDS
GGTTGCCACCAAGAATCAGA+AGG 0.645168 4_3:+59912642 Msa0652190:CDS
TAAAACATATCACTACTACA+AGG 0.651295 4_3:-59912931 None:intergenic
GAAACAATCGTTCTGTTGCG+TGG 0.663763 4_3:+59912838 Msa0652190:three_prime_UTR
ATAACCGGACTTTCAGGTGA+GGG 0.664241 4_3:+59912593 Msa0652190:CDS
ACCAAGAATCAGAAGGCTGG+AGG 0.675099 4_3:+59912649 Msa0652190:CDS
ATACTGACTTGGAACCAGAA+CGG 0.677723 4_3:-59909989 None:intergenic
TAAGGGCTATTCTCAGTCCG+AGG 0.684437 4_3:-59912191 None:intergenic
CATAACCGGACTTTCAGGTG+AGG 0.689606 4_3:+59912592 Msa0652190:CDS
CTTCTGGGGAGGCATAGAGT+GGG 0.692583 4_3:-59911435 None:intergenic
TGAACATGCACTTCTCTGGG+AGG 0.699562 4_3:-59911407 None:intergenic
TGTTAAGCATAAGCAATCAG+GGG 0.708374 4_3:+59912863 Msa0652190:three_prime_UTR
ACAGCTGAAGAAAATAGACA+TGG 0.709949 4_3:+59911767 Msa0652190:CDS
GGATCGGGCAGAAAATCCTG+TGG 0.717346 4_3:-59911539 None:intergenic
CTGACTTGGAACCAGAACGG+AGG 0.718153 4_3:-59909986 None:intergenic
ATGTGTGTGAGTGTATTGTG+AGG 0.723086 4_3:-59909758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGATATTGAATTAATTTT+TGG + chr4_3:59910126-59910145 Msa0652190:intron 10.0%
!!! GTATAATCAATTATAATTTT+TGG + chr4_3:59910588-59910607 Msa0652190:intron 10.0%
!! GATAAAGAAAATTTAATTAA+TGG + chr4_3:59912989-59913008 Msa0652190:three_prime_UTR 10.0%
!!! TATTGAATTAATTTTTGGTT+TGG + chr4_3:59910131-59910150 Msa0652190:intron 15.0%
!! AGATTATCATAAAAAAGAAT+CGG - chr4_3:59910871-59910890 None:intergenic 15.0%
!! TTAAGAATATTAGAAGATAC+TGG - chr4_3:59910440-59910459 None:intergenic 20.0%
!! CAATCAAAAAAACAAAACTA+AGG - chr4_3:59910471-59910490 None:intergenic 20.0%
!!! GTTTTTTTGATTGTATTCTA+TGG + chr4_3:59910478-59910497 Msa0652190:intron 20.0%
!!! TTATAATTTTTGGAACTTGT+TGG + chr4_3:59910598-59910617 Msa0652190:intron 20.0%
!!! TATAATTTTTGGAACTTGTT+GGG + chr4_3:59910599-59910618 Msa0652190:intron 20.0%
!! TGATGAATATTTACAGAAAT+TGG + chr4_3:59910690-59910709 Msa0652190:intron 20.0%
!!! AAAATTACAGAACTTCATTT+TGG + chr4_3:59910785-59910804 Msa0652190:intron 20.0%
!!! CTTTTTTATGATAATCTTGT+TGG + chr4_3:59910874-59910893 Msa0652190:intron 20.0%
!! ATATCATCAAAATGACAATT+TGG - chr4_3:59911168-59911187 None:intergenic 20.0%
!! TGAATTGTTAATATTATTCG+TGG - chr4_3:59911218-59911237 None:intergenic 20.0%
!! ATATCATTCATTTCTTTAAC+AGG - chr4_3:59911262-59911281 None:intergenic 20.0%
!! TTTGAAAATTTCAATCTTCT+GGG - chr4_3:59911453-59911472 None:intergenic 20.0%
!! ATTTGAAAATTTCAATCTTC+TGG - chr4_3:59911454-59911473 None:intergenic 20.0%
!!! TGTTTATATCTCTCTAATTT+TGG + chr4_3:59912143-59912162 Msa0652190:intron 20.0%
! AGAAGAAGATGAATGAATTT+GGG - chr4_3:59909846-59909865 None:intergenic 25.0%
! AAGAAGAAGATGAATGAATT+TGG - chr4_3:59909847-59909866 None:intergenic 25.0%
! CTTCGCTATAAATTCAATTT+GGG + chr4_3:59910525-59910544 Msa0652190:intron 25.0%
!!! ATCAAATTTTAATGAGCCAT+TGG - chr4_3:59910743-59910762 None:intergenic 25.0%
! TAAAAAAGAATCGGTAAACA+TGG - chr4_3:59910862-59910881 None:intergenic 25.0%
! TTGATTAACCTATGCATTTA+AGG + chr4_3:59911118-59911137 Msa0652190:intron 25.0%
!!! TCATTTTGATGATATCTACA+TGG + chr4_3:59911173-59911192 Msa0652190:intron 25.0%
!!! CATTTTGATGATATCTACAT+GGG + chr4_3:59911174-59911193 Msa0652190:intron 25.0%
! TGAATGATATTGATACAATC+CGG + chr4_3:59911272-59911291 Msa0652190:intron 25.0%
!!! TTTTGCGAATTGATTTATAC+CGG - chr4_3:59911294-59911313 None:intergenic 25.0%
! TTTATATTTACTTTGCAGAG+AGG + chr4_3:59911358-59911377 Msa0652190:intron 25.0%
! AGAGGTTGAAAATATTAAGA+AGG + chr4_3:59911376-59911395 Msa0652190:CDS 25.0%
! TTGAAAATTTCAATCTTCTG+GGG - chr4_3:59911452-59911471 None:intergenic 25.0%
!! GATTGAAATTTTCAAATCGT+TGG + chr4_3:59911457-59911476 Msa0652190:CDS 25.0%
!! GATACTGAATTTGCTTAAAA+TGG + chr4_3:59911959-59911978 Msa0652190:intron 25.0%
! ATTGATGGAAATTGATGAAT+AGG + chr4_3:59912166-59912185 Msa0652190:intron 25.0%
!!! TTCAGTTTGTCATTTTTGTT+TGG + chr4_3:59912814-59912833 Msa0652190:three_prime_UTR 25.0%
! TAAAACATATCACTACTACA+AGG - chr4_3:59912934-59912953 None:intergenic 25.0%
!! TTGTCATTTATTCTTCATTG+CGG + chr4_3:59913069-59913088 Msa0652190:three_prime_UTR 25.0%
ATGAATGAATTTGGGAATCA+CGG - chr4_3:59909838-59909857 None:intergenic 30.0%
TGAAAAAGGGATCTGAAAAA+GGG - chr4_3:59910016-59910035 None:intergenic 30.0%
TTGAAAAAGGGATCTGAAAA+AGG - chr4_3:59910017-59910036 None:intergenic 30.0%
ATGCACGATGAATTGAAAAA+GGG - chr4_3:59910029-59910048 None:intergenic 30.0%
AATGCACGATGAATTGAAAA+AGG - chr4_3:59910030-59910049 None:intergenic 30.0%
!!! TTTTTGGTTTGGTGAAATGA+TGG + chr4_3:59910142-59910161 Msa0652190:intron 30.0%
AGAACGTTGTGAATATAAGT+TGG - chr4_3:59910282-59910301 None:intergenic 30.0%
AGATACTGGAGAAAAACATA+GGG - chr4_3:59910426-59910445 None:intergenic 30.0%
AAGATACTGGAGAAAAACAT+AGG - chr4_3:59910427-59910446 None:intergenic 30.0%
GCTTCGCTATAAATTCAATT+TGG + chr4_3:59910524-59910543 Msa0652190:intron 30.0%
ATCAAATCAAATCAAGCAGA+TGG - chr4_3:59910634-59910653 None:intergenic 30.0%
!! AATTTTAATGAGCCATTGGA+CGG - chr4_3:59910739-59910758 None:intergenic 30.0%
! TAGAAGTATGTACTCTGTAT+TGG - chr4_3:59911089-59911108 None:intergenic 30.0%
ATTAACCTATGCATTTAAGG+TGG + chr4_3:59911121-59911140 Msa0652190:intron 30.0%
CAAAAGCAAGATCATTTGAA+TGG + chr4_3:59911309-59911328 Msa0652190:intron 30.0%
! TGAAATTTTCAAATCGTTGG+AGG + chr4_3:59911460-59911479 Msa0652190:CDS 30.0%
! GAAATTTTCAAATCGTTGGA+GGG + chr4_3:59911461-59911480 Msa0652190:CDS 30.0%
AGAACAACAAAGTAATCATC+TGG - chr4_3:59911623-59911642 None:intergenic 30.0%
!! AGATGATTACTTTGTTGTTC+TGG + chr4_3:59911622-59911641 Msa0652190:CDS 30.0%
TTAAGCATAGTTTGGTAAGT+AGG - chr4_3:59911677-59911696 None:intergenic 30.0%
! CCAAAGTATTAAGCATAGTT+TGG - chr4_3:59911685-59911704 None:intergenic 30.0%
CCAAACTATGCTTAATACTT+TGG + chr4_3:59911682-59911701 Msa0652190:CDS 30.0%
ACTATGCTTAATACTTTGGA+TGG + chr4_3:59911686-59911705 Msa0652190:CDS 30.0%
CAATTTGTCTCATATCAACA+CGG - chr4_3:59911826-59911845 None:intergenic 30.0%
AAGATCATCAATAGATGTCT+AGG - chr4_3:59911891-59911910 None:intergenic 30.0%
CGAGTCAAAAATGAATTCAA+GGG - chr4_3:59912086-59912105 None:intergenic 30.0%
TCGAGTCAAAAATGAATTCA+AGG - chr4_3:59912087-59912106 None:intergenic 30.0%
! TCTCTCTAATTTTGGATTGA+TGG + chr4_3:59912151-59912170 Msa0652190:intron 30.0%
AAATTGATGAATAGGATCCT+CGG + chr4_3:59912174-59912193 Msa0652190:intron 30.0%
!! AAAGATAGTGGAAAAGCTAT+TGG + chr4_3:59912367-59912386 Msa0652190:CDS 30.0%
!! ATATACTTGAGTTTCTGGTT+GGG + chr4_3:59912552-59912571 Msa0652190:CDS 30.0%
ATTCAGTTGGATTCATGATA+GGG + chr4_3:59912712-59912731 Msa0652190:CDS 30.0%
GTACTACTCTAAGCATATTA+AGG + chr4_3:59912737-59912756 Msa0652190:exon 30.0%
ATATCACTACTACAAGGAAA+AGG - chr4_3:59912928-59912947 None:intergenic 30.0%
!! TCCTTTAAAGGCAATTTTGA+TGG + chr4_3:59913033-59913052 Msa0652190:three_prime_UTR 30.0%
ATAGGCTACATTGGTATATT+AGG + chr4_3:59913154-59913173 Msa0652190:three_prime_UTR 30.0%
! TGAAAAAGGGAATACTGACT+TGG - chr4_3:59910003-59910022 None:intergenic 35.0%
! GCTTTGCATGTATAGTCTTA+TGG + chr4_3:59910204-59910223 Msa0652190:intron 35.0%
!! TGCATGTATAGTCTTATGGT+TGG + chr4_3:59910208-59910227 Msa0652190:intron 35.0%
!! TTATGGTTGGTGAGGATATT+CGG + chr4_3:59910221-59910240 Msa0652190:intron 35.0%
CACAGAGATTCATGTTGAAT+AGG - chr4_3:59910567-59910586 None:intergenic 35.0%
GTATGGGTGACATTAAATCT+GGG - chr4_3:59910985-59911004 None:intergenic 35.0%
TGTATGGGTGACATTAAATC+TGG - chr4_3:59910986-59911005 None:intergenic 35.0%
ACTTCAGTGACATAATGTCA+CGG - chr4_3:59911061-59911080 None:intergenic 35.0%
AAGCAAGATCATTTGAATGG+TGG + chr4_3:59911312-59911331 Msa0652190:intron 35.0%
! AAAATTTCAATCTTCTGGGG+AGG - chr4_3:59911449-59911468 None:intergenic 35.0%
! AGGTTTAAGGTGAGTCAATA+AGG - chr4_3:59911501-59911520 None:intergenic 35.0%
AACACTTCTCTACAGGTTTA+AGG - chr4_3:59911514-59911533 None:intergenic 35.0%
! TTAAACCTGTAGAGAAGTGT+TGG + chr4_3:59911513-59911532 Msa0652190:CDS 35.0%
!! GATTACTTTGTTGTTCTGGT+TGG + chr4_3:59911626-59911645 Msa0652190:CDS 35.0%
ACAGCTGAAGAAAATAGACA+TGG + chr4_3:59911767-59911786 Msa0652190:CDS 35.0%
AACAAGTATCTCTACTTGTC+CGG + chr4_3:59911800-59911819 Msa0652190:CDS 35.0%
AAGACAATTCAGTACCTGAT+TGG + chr4_3:59911848-59911867 Msa0652190:CDS 35.0%
AGACAATTCAGTACCTGATT+GGG + chr4_3:59911849-59911868 Msa0652190:CDS 35.0%
TGTAGATAAAGCCAAGGTAA+GGG - chr4_3:59912211-59912230 None:intergenic 35.0%
ATGAAGTGTAGATAAAGCCA+AGG - chr4_3:59912217-59912236 None:intergenic 35.0%
TCTACACTTCATTTCAAGAG+AGG + chr4_3:59912225-59912244 Msa0652190:CDS 35.0%
CTACACTTCATTTCAAGAGA+GGG + chr4_3:59912226-59912245 Msa0652190:CDS 35.0%
TGTGTTTCCATGCGATATAA+AGG - chr4_3:59912255-59912274 None:intergenic 35.0%
CAGCAGAATAGTTATCAAAC+AGG - chr4_3:59912490-59912509 None:intergenic 35.0%
AAGTATATCAGCATAGTCCT+TGG - chr4_3:59912540-59912559 None:intergenic 35.0%
TGCTGATATACTTGAGTTTC+TGG + chr4_3:59912547-59912566 Msa0652190:CDS 35.0%
!! GATATACTTGAGTTTCTGGT+TGG + chr4_3:59912551-59912570 Msa0652190:CDS 35.0%
AATCCAACTGAATGCAAGTT+TGG - chr4_3:59912705-59912724 None:intergenic 35.0%
CATTCAGTTGGATTCATGAT+AGG + chr4_3:59912711-59912730 Msa0652190:CDS 35.0%
TCTGTTAAGCATAAGCAATC+AGG + chr4_3:59912861-59912880 Msa0652190:three_prime_UTR 35.0%
CTGTTAAGCATAAGCAATCA+GGG + chr4_3:59912862-59912881 Msa0652190:three_prime_UTR 35.0%
TGTTAAGCATAAGCAATCAG+GGG + chr4_3:59912863-59912882 Msa0652190:three_prime_UTR 35.0%
GTGTGTGAAAAGTCCTTTAA+AGG + chr4_3:59913021-59913040 Msa0652190:three_prime_UTR 35.0%
GCCATCAAAATTGCCTTTAA+AGG - chr4_3:59913037-59913056 None:intergenic 35.0%
! TTTGTTGCTTGTAGCTTCAT+TGG + chr4_3:59913130-59913149 Msa0652190:three_prime_UTR 35.0%
TTCATTGGAATAGGCTACAT+TGG + chr4_3:59913145-59913164 Msa0652190:three_prime_UTR 35.0%
ATGTGTGTGAGTGTATTGTG+AGG - chr4_3:59909761-59909780 None:intergenic 40.0%
ATCGAATCCGAATCCAACAA+TGG + chr4_3:59909869-59909888 Msa0652190:exon 40.0%
AGAAGGAGGATGTTTGTGTA+GGG - chr4_3:59909914-59909933 None:intergenic 40.0%
! ATTTGAGACTGGCCATTTGA+GGG - chr4_3:59909941-59909960 None:intergenic 40.0%
! GAATTTGGGAGATTTGAGAC+TGG - chr4_3:59909952-59909971 None:intergenic 40.0%
CAAATCTCCCAAATTCGTCA+TGG + chr4_3:59909956-59909975 Msa0652190:CDS 40.0%
!! ATACTGACTTGGAACCAGAA+CGG - chr4_3:59909992-59910011 None:intergenic 40.0%
!! TGGTTTGGTGAAATGATGGT+TGG + chr4_3:59910146-59910165 Msa0652190:intron 40.0%
!! GGTTTGGTGAAATGATGGTT+GGG + chr4_3:59910147-59910166 Msa0652190:intron 40.0%
! GTTTGGTGAAATGATGGTTG+GGG + chr4_3:59910148-59910167 Msa0652190:intron 40.0%
!! GTATAGTCTTATGGTTGGTG+AGG + chr4_3:59910213-59910232 Msa0652190:intron 40.0%
!! TATGGTTGGTGAGGATATTC+GGG + chr4_3:59910222-59910241 Msa0652190:intron 40.0%
GGTATAAACGCATATTCCCT+AGG + chr4_3:59910499-59910518 Msa0652190:intron 40.0%
ATAAACGCATATTCCCTAGG+TGG + chr4_3:59910502-59910521 Msa0652190:intron 40.0%
ATTTATAGCGAAGCCACCTA+GGG - chr4_3:59910518-59910537 None:intergenic 40.0%
AATTTATAGCGAAGCCACCT+AGG - chr4_3:59910519-59910538 None:intergenic 40.0%
CTGCAGTCACACAAAATTGA+CGG - chr4_3:59910812-59910831 None:intergenic 40.0%
TTGTTGGAGCTGAATACAGA+GGG + chr4_3:59910890-59910909 Msa0652190:intron 40.0%
TGTCACCGTGACATTAAATC+TGG + chr4_3:59910933-59910952 Msa0652190:intron 40.0%
GTCACCGTGACATTAAATCT+GGG + chr4_3:59910934-59910953 Msa0652190:intron 40.0%
GTAGCCCAGATTTAATGTCA+CGG - chr4_3:59910941-59910960 None:intergenic 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_3:59910974-59910993 None:intergenic 40.0%
ACACAAAGGTTTGTGTTGTG+TGG - chr4_3:59911020-59911039 None:intergenic 40.0%
ACACAACACAAACCTTTGTG+TGG + chr4_3:59911019-59911038 Msa0652190:intron 40.0%
ATTAAATCTGGGCCACACAA+AGG - chr4_3:59910974-59910993 None:intergenic 40.0%
GTCACGGTGACATTAAATCT+GGG - chr4_3:59911045-59911064 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG - chr4_3:59911046-59911065 None:intergenic 40.0%
! AACCTATGCATTTAAGGTGG+TGG + chr4_3:59911124-59911143 Msa0652190:intron 40.0%
TACCACCACCTTAAATGCAT+AGG - chr4_3:59911129-59911148 None:intergenic 40.0%
ACTTGAACATGCACTTCTCT+GGG - chr4_3:59911413-59911432 None:intergenic 40.0%
TACTTGAACATGCACTTCTC+TGG - chr4_3:59911414-59911433 None:intergenic 40.0%
! TTTTCAAATCGTTGGAGGGT+TGG + chr4_3:59911465-59911484 Msa0652190:CDS 40.0%
TTTCAAATCGTTGGAGGGTT+GGG + chr4_3:59911466-59911485 Msa0652190:CDS 40.0%
! TGTTGTTCTGGTTGGAGATA+TGG + chr4_3:59911634-59911653 Msa0652190:CDS 40.0%
CAGTGACAAATTGATGCATC+TGG - chr4_3:59912013-59912032 None:intergenic 40.0%
GTGTAGATAAAGCCAAGGTA+AGG - chr4_3:59912212-59912231 None:intergenic 40.0%
TCTTTGTGTAAGCAGTCTCA+TGG - chr4_3:59912352-59912371 None:intergenic 40.0%
GACTGCTTACACAAAGATAG+TGG + chr4_3:59912355-59912374 Msa0652190:CDS 40.0%
CTATTGGAGATTGATCCTGA+TGG + chr4_3:59912383-59912402 Msa0652190:CDS 40.0%
AAAGCAATAACCGTTCCATC+AGG - chr4_3:59912401-59912420 None:intergenic 40.0%
!! TTGCTTTTGCTGACATGATG+AGG + chr4_3:59912414-59912433 Msa0652190:CDS 40.0%
TATCAAACAGGTTGTCGTCT+CGG - chr4_3:59912478-59912497 None:intergenic 40.0%
CATCCAAACTTGCATTCAGT+TGG + chr4_3:59912699-59912718 Msa0652190:CDS 40.0%
AATCTTCCAGCAACTCTACT+TGG + chr4_3:59912769-59912788 Msa0652190:three_prime_UTR 40.0%
!!! AAAGGCAATTTTGATGGCGA+TGG + chr4_3:59913039-59913058 Msa0652190:three_prime_UTR 40.0%
!!! AAGGCAATTTTGATGGCGAT+GGG + chr4_3:59913040-59913059 Msa0652190:three_prime_UTR 40.0%
TTATTCTTCATTGCGGTCAC+CGG + chr4_3:59913076-59913095 Msa0652190:three_prime_UTR 40.0%
TCACACCAACTCAAGTATTC+CGG - chr4_3:59913098-59913117 None:intergenic 40.0%
!! AATACTTGAGTTGGTGTGAG+TGG + chr4_3:59913099-59913118 Msa0652190:three_prime_UTR 40.0%
GCTTGTAGCTTCATTGGAAT+AGG + chr4_3:59913136-59913155 Msa0652190:three_prime_UTR 40.0%
GGCTACATTGGTATATTAGG+AGG + chr4_3:59913157-59913176 Msa0652190:three_prime_UTR 40.0%
CTGAGAGCCATTGTTGGATT+CGG - chr4_3:59909879-59909898 None:intergenic 45.0%
GAGGATGTTTGTGTAGGGAA+AGG - chr4_3:59909909-59909928 None:intergenic 45.0%
GAGAAGGAGGATGTTTGTGT+AGG - chr4_3:59909915-59909934 None:intergenic 45.0%
! GATTTGAGACTGGCCATTTG+AGG - chr4_3:59909942-59909961 None:intergenic 45.0%
GTGGAAGCCATGACGAATTT+GGG - chr4_3:59909966-59909985 None:intergenic 45.0%
GGATATTCGGGATGCTTGTT+TGG + chr4_3:59910234-59910253 Msa0652190:intron 45.0%
TGGTCATACAGTCACGATGT+TGG + chr4_3:59910710-59910729 Msa0652190:intron 45.0%
TCATACAGTCACGATGTTGG+TGG + chr4_3:59910713-59910732 Msa0652190:intron 45.0%
! CGTCAATTTTGTGTGACTGC+AGG + chr4_3:59910810-59910829 Msa0652190:intron 45.0%
TTTGCTCACTGCAGCAAATC+CGG + chr4_3:59910834-59910853 Msa0652190:intron 45.0%
AGAATCGGTAAACATGGACC+CGG - chr4_3:59910856-59910875 None:intergenic 45.0%
CTTGTTGGAGCTGAATACAG+AGG + chr4_3:59910889-59910908 Msa0652190:intron 45.0%
TGTTGGAGCTGAATACAGAG+GGG + chr4_3:59910891-59910910 Msa0652190:intron 45.0%
ACACAACACACACCTTTGTG+TGG + chr4_3:59910959-59910978 Msa0652190:intron 45.0%
TGTCACCCATACAACACATC+TGG + chr4_3:59910993-59911012 Msa0652190:intron 45.0%
GTCACCCATACAACACATCT+GGG + chr4_3:59910994-59911013 Msa0652190:intron 45.0%
AATCCATCTGAGGAAGGATC+GGG - chr4_3:59911557-59911576 None:intergenic 45.0%
GAATCCATCTGAGGAAGGAT+CGG - chr4_3:59911558-59911577 None:intergenic 45.0%
TCTTCGAATCCATCTGAGGA+AGG - chr4_3:59911563-59911582 None:intergenic 45.0%
TTGCTCTTCGAATCCATCTG+AGG - chr4_3:59911567-59911586 None:intergenic 45.0%
TGGATTCGAAGAGCAAGTGA+AGG + chr4_3:59911571-59911590 Msa0652190:CDS 45.0%
AAGTGAAGGAACTGAGAGAG+AGG + chr4_3:59911585-59911604 Msa0652190:CDS 45.0%
AGTGAAGGAACTGAGAGAGA+GGG + chr4_3:59911586-59911605 Msa0652190:CDS 45.0%
GATGGAGTTCGTGATGAAAC+AGG + chr4_3:59911704-59911723 Msa0652190:CDS 45.0%
TCCAAATAGCCCAAGGAGTA+GGG - chr4_3:59911736-59911755 None:intergenic 45.0%
TCCTTGGGCTATTTGGACAA+GGG + chr4_3:59911739-59911758 Msa0652190:CDS 45.0%
TTGTCTCATATCAACACGGC+CGG - chr4_3:59911822-59911841 None:intergenic 45.0%
ATTCAGTACCTGATTGGGTC+TGG + chr4_3:59911854-59911873 Msa0652190:CDS 45.0%
TTACCATTCCAGACCCAATC+AGG - chr4_3:59911865-59911884 None:intergenic 45.0%
ACTGAGAATAGCCCTTACCT+TGG + chr4_3:59912197-59912216 Msa0652190:CDS 45.0%
! TTGAAGTTGGCTCAGATCTG+TGG + chr4_3:59912302-59912321 Msa0652190:CDS 45.0%
GGAGATTGATCCTGATGGAA+CGG + chr4_3:59912388-59912407 Msa0652190:CDS 45.0%
!! TACTTGAGTTTCTGGTTGGG+AGG + chr4_3:59912555-59912574 Msa0652190:CDS 45.0%
ACCTGAAAGTCCGGTTATGT+CGG - chr4_3:59912591-59912610 None:intergenic 45.0%
! ATAACCGGACTTTCAGGTGA+GGG + chr4_3:59912593-59912612 Msa0652190:CDS 45.0%
! AAGGCACAGGAGTATGTTTG+TGG + chr4_3:59912620-59912639 Msa0652190:CDS 45.0%
! AGGCACAGGAGTATGTTTGT+GGG + chr4_3:59912621-59912640 Msa0652190:CDS 45.0%
ATTGCTCCAAGTAGAGTTGC+TGG - chr4_3:59912778-59912797 None:intergenic 45.0%
GAAACAATCGTTCTGTTGCG+TGG + chr4_3:59912838-59912857 Msa0652190:three_prime_UTR 45.0%
! GGACTTTTCACACACATGCA+CGG - chr4_3:59913016-59913035 None:intergenic 45.0%
!! AAAAAAATAAAAAAAAAAAG+TGG - chr4_3:59910350-59910369 None:intergenic 5.0%
GCAGGAATGGACAATGGGAA+GGG - chr4_3:59909733-59909752 None:intergenic 50.0%
CAGAGGCAGGAATGGACAAT+GGG - chr4_3:59909738-59909757 None:intergenic 50.0%
GTGAGTGTATTGTGAGGCAG+AGG - chr4_3:59909755-59909774 None:intergenic 50.0%
!! GTTGCTCTGAGAGCCATTGT+TGG - chr4_3:59909885-59909904 None:intergenic 50.0%
CATTTGAGGGAGAGAGAAGG+AGG - chr4_3:59909928-59909947 None:intergenic 50.0%
CTCCTTCTCTCTCCCTCAAA+TGG + chr4_3:59909926-59909945 Msa0652190:CDS 50.0%
GGTGGAAGCCATGACGAATT+TGG - chr4_3:59909967-59909986 None:intergenic 50.0%
! TGACTTGGAACCAGAACGGA+GGG - chr4_3:59909988-59910007 None:intergenic 50.0%
TGGTGAAATGATGGTTGGGG+TGG + chr4_3:59910151-59910170 Msa0652190:intron 50.0%
TTGCTCACTGCAGCAAATCC+GGG + chr4_3:59910835-59910854 Msa0652190:intron 50.0%
AATACAGAGGGGTGGCACTT+TGG + chr4_3:59910902-59910921 Msa0652190:intron 50.0%
GTGGCCCAGATGTGTTGTAT+GGG - chr4_3:59911001-59911020 None:intergenic 50.0%
TGTGGCCCAGATGTGTTGTA+TGG - chr4_3:59911002-59911021 None:intergenic 50.0%
TGAACATGCACTTCTCTGGG+AGG - chr4_3:59911410-59911429 None:intergenic 50.0%
GGTTGCCAACACTTCTCTAC+AGG - chr4_3:59911521-59911540 None:intergenic 50.0%
!! AGAGAAGTGTTGGCAACCAC+AGG + chr4_3:59911523-59911542 Msa0652190:CDS 50.0%
GTCCAAATAGCCCAAGGAGT+AGG - chr4_3:59911737-59911756 None:intergenic 50.0%
CTCCTTGGGCTATTTGGACA+AGG + chr4_3:59911738-59911757 Msa0652190:CDS 50.0%
GTACCTGATTGGGTCTGGAA+TGG + chr4_3:59911859-59911878 Msa0652190:CDS 50.0%
TAAGGGCTATTCTCAGTCCG+AGG - chr4_3:59912194-59912213 None:intergenic 50.0%
AGGGCGACCTTTATATCGCA+TGG + chr4_3:59912245-59912264 Msa0652190:CDS 50.0%
TATCGCATGGAAACACAGCC+AGG + chr4_3:59912258-59912277 Msa0652190:CDS 50.0%
!! AAACACAGCCAGGCTTGCTA+AGG + chr4_3:59912268-59912287 Msa0652190:CDS 50.0%
CTCATGGCGTTTCTCATCAG+AGG - chr4_3:59912336-59912355 None:intergenic 50.0%
CCATCATACATCAGGTGTGC+TGG - chr4_3:59912455-59912474 None:intergenic 50.0%
CCAGCACACCTGATGTATGA+TGG + chr4_3:59912452-59912471 Msa0652190:CDS 50.0%
AGTGTAGACTCCAATGCGCT+GGG - chr4_3:59912516-59912535 None:intergenic 50.0%
CATTGGAGTCTACACTGCCA+AGG + chr4_3:59912520-59912539 Msa0652190:CDS 50.0%
!! TTGAGTTTCTGGTTGGGAGG+TGG + chr4_3:59912558-59912577 Msa0652190:CDS 50.0%
! CATAACCGGACTTTCAGGTG+AGG + chr4_3:59912592-59912611 Msa0652190:CDS 50.0%
! ACTTTCAGGTGAGGGACGAA+AGG + chr4_3:59912601-59912620 Msa0652190:CDS 50.0%
GGTTGCCACCAAGAATCAGA+AGG + chr4_3:59912642-59912661 Msa0652190:CDS 50.0%
TCCAGCCTTCTGATTCTTGG+TGG - chr4_3:59912650-59912669 None:intergenic 50.0%
ACCAAGAATCAGAAGGCTGG+AGG + chr4_3:59912649-59912668 Msa0652190:CDS 50.0%
TCCTCCAGCCTTCTGATTCT+TGG - chr4_3:59912653-59912672 None:intergenic 50.0%
GAGAGCTTCAGCAAGAGCAA+AGG + chr4_3:59912673-59912692 Msa0652190:CDS 50.0%
GGTCACCGGAATACTTGAGT+TGG + chr4_3:59913090-59913109 Msa0652190:three_prime_UTR 50.0%
GGCAGGAATGGACAATGGGA+AGG - chr4_3:59909734-59909753 None:intergenic 55.0%
GCAGAGGCAGGAATGGACAA+TGG - chr4_3:59909739-59909758 None:intergenic 55.0%
TTGTGAGGCAGAGGCAGGAA+TGG - chr4_3:59909746-59909765 None:intergenic 55.0%
GTGTATTGTGAGGCAGAGGC+AGG - chr4_3:59909751-59909770 None:intergenic 55.0%
GGCCATTTGAGGGAGAGAGA+AGG - chr4_3:59909931-59909950 None:intergenic 55.0%
!! CTGACTTGGAACCAGAACGG+AGG - chr4_3:59909989-59910008 None:intergenic 55.0%
TGGAGCTGAATACAGAGGGG+TGG + chr4_3:59910894-59910913 Msa0652190:intron 55.0%
! CTTCTGGGGAGGCATAGAGT+GGG - chr4_3:59911438-59911457 None:intergenic 55.0%
! TCTTCTGGGGAGGCATAGAG+TGG - chr4_3:59911439-59911458 None:intergenic 55.0%
GGATCGGGCAGAAAATCCTG+TGG - chr4_3:59911542-59911561 None:intergenic 55.0%
AATAGCCCAAGGAGTAGGGC+TGG - chr4_3:59911732-59911751 None:intergenic 55.0%
GCCCTACTCCTTGGGCTATT+TGG + chr4_3:59911732-59911751 Msa0652190:CDS 55.0%
GCCCTTGTCCAAATAGCCCA+AGG - chr4_3:59911743-59911762 None:intergenic 55.0%
GGGCTATTTGGACAAGGGCA+TGG + chr4_3:59911744-59911763 Msa0652190:CDS 55.0%
! GGAACGCGGCGATTTGAAGT+TGG + chr4_3:59912289-59912308 Msa0652190:CDS 55.0%
CGTCTCGGCCATCATACATC+AGG - chr4_3:59912463-59912482 None:intergenic 55.0%
CAGTGTAGACTCCAATGCGC+TGG - chr4_3:59912517-59912536 None:intergenic 55.0%
!! GTTTCTGGTTGGGAGGTGGA+AGG + chr4_3:59912562-59912581 Msa0652190:CDS 55.0%
TGGAAGGTGGCCGACATAAC+CGG + chr4_3:59912578-59912597 Msa0652190:CDS 55.0%
GCCGACATAACCGGACTTTC+AGG + chr4_3:59912587-59912606 Msa0652190:CDS 55.0%
TCGTCCCTCACCTGAAAGTC+CGG - chr4_3:59912600-59912619 None:intergenic 55.0%
GCCACCAAGAATCAGAAGGC+TGG + chr4_3:59912646-59912665 Msa0652190:CDS 55.0%
ATGGCTTCCACCCTCCGTTC+TGG + chr4_3:59909975-59909994 Msa0652190:CDS 60.0%
CTTGGAACCAGAACGGAGGG+TGG - chr4_3:59909985-59910004 None:intergenic 60.0%
!! CGATGTTGGTGGCCGTCCAA+TGG + chr4_3:59910724-59910743 Msa0652190:intron 60.0%
ATCGTTGGAGGGTTGGGCTG+AGG + chr4_3:59911472-59911491 Msa0652190:CDS 60.0%
CTGCCCGATCCTTCCTCAGA+TGG + chr4_3:59911551-59911570 Msa0652190:CDS 60.0%
AGGTGCCAGCCCTACTCCTT+GGG + chr4_3:59911724-59911743 Msa0652190:CDS 60.0%
!! GCCAGGCTTGCTAAGGAACG+CGG + chr4_3:59912275-59912294 Msa0652190:CDS 60.0%
TCTGCTGTTGCCCAGCGCAT+TGG + chr4_3:59912503-59912522 Msa0652190:CDS 60.0%
TCTGGTTGGGAGGTGGAAGG+TGG + chr4_3:59912565-59912584 Msa0652190:CDS 60.0%
! AGGTGAGGGACGAAAGGCAC+AGG + chr4_3:59912607-59912626 Msa0652190:CDS 60.0%
CAGGTGCCAGCCCTACTCCT+TGG + chr4_3:59911723-59911742 Msa0652190:CDS 65.0%
GCCGCGTTCCTTAGCAAGCC+TGG - chr4_3:59912279-59912298 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 59909706 59913202 59909706 ID=Msa0652190;Name=Msa0652190
chr4_3 mRNA 59909706 59913202 59909706 ID=Msa0652190-mRNA-1;Parent=Msa0652190;Name=Msa0652190-mRNA-1;_AED=0.11;_eAED=0.11;_QI=182|1|1|1|1|1|3|454|393
chr4_3 exon 59909706 59910003 59909706 ID=Msa0652190-mRNA-1:exon:16172;Parent=Msa0652190-mRNA-1
chr4_3 exon 59911376 59911880 59911376 ID=Msa0652190-mRNA-1:exon:16173;Parent=Msa0652190-mRNA-1
chr4_3 exon 59912188 59913202 59912188 ID=Msa0652190-mRNA-1:exon:16174;Parent=Msa0652190-mRNA-1
chr4_3 five_prime_UTR 59909706 59909887 59909706 ID=Msa0652190-mRNA-1:five_prime_utr;Parent=Msa0652190-mRNA-1
chr4_3 CDS 59909888 59910003 59909888 ID=Msa0652190-mRNA-1:cds;Parent=Msa0652190-mRNA-1
chr4_3 CDS 59911376 59911880 59911376 ID=Msa0652190-mRNA-1:cds;Parent=Msa0652190-mRNA-1
chr4_3 CDS 59912188 59912748 59912188 ID=Msa0652190-mRNA-1:cds;Parent=Msa0652190-mRNA-1
chr4_3 three_prime_UTR 59912749 59913202 59912749 ID=Msa0652190-mRNA-1:three_prime_utr;Parent=Msa0652190-mRNA-1
Gene Sequence

>Msa0652190

ATGGCTCTCAGAGCAACACCTTTCCCTACACAAACATCCTCCTTCTCTCTCCCTCAAATGGCCAGTCTCAAATCTCCCAAATTCGTCATGGCTTCCACCCTCCGTTCTGGTTCCAAAGAGGTTGAAAATATTAAGAAGGCTTTCACACCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCCCAGAAGATTGAAATTTTCAAATCGTTGGAGGGTTGGGCTGAGGAAACCTTATTGACTCACCTTAAACCTGTAGAGAAGTGTTGGCAACCACAGGATTTTCTGCCCGATCCTTCCTCAGATGGATTCGAAGAGCAAGTGAAGGAACTGAGAGAGAGGGCAAAAGAGCTTCCAGATGATTACTTTGTTGTTCTGGTTGGAGATATGGTCACAGAAGAAGCTCTTCCTACTTACCAAACTATGCTTAATACTTTGGATGGAGTTCGTGATGAAACAGGTGCCAGCCCTACTCCTTGGGCTATTTGGACAAGGGCATGGACAGCTGAAGAAAATAGACATGGCGATCTTCTTAACAAGTATCTCTACTTGTCCGGCCGTGTTGATATGAGACAAATTGAGAAGACAATTCAGTACCTGATTGGGTCTGGAATGGATCCTCGGACTGAGAATAGCCCTTACCTTGGCTTTATCTACACTTCATTTCAAGAGAGGGCGACCTTTATATCGCATGGAAACACAGCCAGGCTTGCTAAGGAACGCGGCGATTTGAAGTTGGCTCAGATCTGTGGTCTGATTGCCTCTGATGAGAAACGCCATGAGACTGCTTACACAAAGATAGTGGAAAAGCTATTGGAGATTGATCCTGATGGAACGGTTATTGCTTTTGCTGACATGATGAGGAAGAAAATTGCTATGCCAGCACACCTGATGTATGATGGCCGAGACGACAACCTGTTTGATAACTATTCTGCTGTTGCCCAGCGCATTGGAGTCTACACTGCCAAGGACTATGCTGATATACTTGAGTTTCTGGTTGGGAGGTGGAAGGTGGCCGACATAACCGGACTTTCAGGTGAGGGACGAAAGGCACAGGAGTATGTTTGTGGGTTGCCACCAAGAATCAGAAGGCTGGAGGAGAGAGCTTCAGCAAGAGCAAAGGAATCATCCAAACTTGCATTCAGTTGGATTCATGATAGGGAAGTACTACTCTAA
Protein sequence

>Msa0652190

MALRATPFPTQTSSFSLPQMASLKSPKFVMASTLRSGSKEVENIKKAFTPPREVHVQVTHSMPPQKIEIFKSLEGWAEETLLTHLKPVEKCWQPQDFLPDPSSDGFEEQVKELRERAKELPDDYFVVLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKERGDLKLAQICGLIASDEKRHETAYTKIVEKLLEIDPDGTVIAFADMMRKKIAMPAHLMYDGRDDNLFDNYSAVAQRIGVYTAKDYADILEFLVGRWKVADITGLSGEGRKAQEYVCGLPPRIRRLEERASARAKESSKLAFSWIHDREVLL*