AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037040 MtrunA17_Chr1g0199921 97.330 824 16 1 1 818 1 824 0.0 1647
Msa0037040 MtrunA17_Chr4g0012061 33.457 541 312 11 132 669 100 595 1.04e-85 287
Msa0037040 MtrunA17_Chr1g0148121 36.424 453 265 7 197 641 134 571 3.64e-82 276
Msa0037040 MtrunA17_Chr3g0136721 33.772 456 269 5 197 641 138 571 3.45e-81 275
Msa0037040 MtrunA17_Chr6g0465161 33.925 507 300 9 110 615 56 528 4.22e-81 275
Msa0037040 MtrunA17_Chr7g0230671 35.174 489 290 10 133 619 89 552 1.49e-77 265
Msa0037040 MtrunA17_Chr1g0169361 31.697 489 302 6 126 611 126 585 1.83e-76 264
Msa0037040 MtrunA17_Chr8g0382921 34.889 450 236 13 197 612 198 624 2.06e-60 218
Msa0037040 MtrunA17_Chr3g0129101 34.368 419 229 8 197 583 207 611 2.25e-58 213
Msa0037040 MtrunA17_Chr3g0120791 29.717 424 282 4 197 617 204 614 1.35e-51 192
Msa0037040 MtrunA17_Chr5g0428451 27.021 433 256 12 171 559 89 505 3.34e-32 132
Msa0037040 MtrunA17_Chr5g0433911 31.325 249 150 5 208 453 77 307 1.24e-25 112
Msa0037040 MtrunA17_Chr1g0147481 27.049 366 226 12 173 522 104 444 4.25e-22 102
Msa0037040 MtrunA17_Chr4g0057941 24.096 415 277 12 203 599 77 471 1.13e-20 96.3
Msa0037040 MtrunA17_Chr8g0360981 28.013 307 170 7 196 471 209 495 7.00e-19 91.7
Msa0037040 MtrunA17_Chr2g0281061 26.331 338 213 6 196 512 217 539 3.20e-18 89.4
Msa0037040 MtrunA17_Chr3g0113361 25.984 254 166 6 197 443 90 328 4.98e-17 85.5
Msa0037040 MtrunA17_Chr1g0193751 29.329 283 166 8 209 481 242 500 1.01e-16 84.7
Msa0037040 MtrunA17_Chr4g0048521 27.148 291 173 6 196 462 220 495 3.39e-15 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037040 AT2G39190.2 59.949 779 290 5 29 803 42 802 0.0 957
Msa0037040 AT2G39190.1 63.415 328 112 1 29 356 42 361 2.16e-144 430
Msa0037040 AT5G24970.3 37.844 436 233 4 197 611 140 558 3.22e-89 297
Msa0037040 AT5G24970.2 37.844 436 233 4 197 611 179 597 6.20e-89 298
Msa0037040 AT5G24970.1 37.385 436 232 5 197 611 140 555 2.06e-85 287
Msa0037040 AT1G79600.1 33.673 490 296 8 133 619 96 559 2.33e-83 281
Msa0037040 AT4G31390.1 37.204 422 247 5 197 615 170 576 9.14e-82 276
Msa0037040 AT1G71810.1 32.661 545 318 11 79 615 16 519 3.61e-79 270
Msa0037040 AT3G24190.1 32.305 486 297 6 129 611 137 593 6.50e-79 271
Msa0037040 AT4G31390.2 35.782 422 228 6 197 615 170 551 7.52e-74 254
Msa0037040 AT4G31390.3 36.247 389 230 5 230 615 4 377 1.58e-71 243
Msa0037040 AT5G64940.1 33.017 421 234 9 197 583 222 628 7.06e-55 203
Msa0037040 AT5G64940.2 33.017 421 234 9 197 583 222 628 7.06e-55 203
Msa0037040 AT3G07700.1 30.287 383 253 3 197 578 193 562 1.84e-50 189
Msa0037040 AT3G07700.2 30.287 383 253 3 197 578 193 562 1.84e-50 189
Msa0037040 AT3G07700.4 30.287 383 253 3 197 578 193 562 1.84e-50 189
Msa0037040 AT3G07700.3 30.024 413 244 7 197 578 193 591 4.08e-49 186
Msa0037040 AT5G05200.1 28.184 369 231 9 171 519 90 444 1.37e-31 130
Msa0037040 AT4G24810.5 29.545 264 177 5 203 462 31 289 4.30e-24 104
Msa0037040 AT4G24810.4 29.545 264 177 5 203 462 31 289 6.06e-24 103
Msa0037040 AT4G24810.2 25.876 371 255 9 203 564 74 433 2.36e-23 105
Msa0037040 AT4G24810.6 25.876 371 255 9 203 564 31 390 2.50e-23 104
Msa0037040 AT4G24810.1 25.876 371 255 9 203 564 31 390 2.50e-23 104
Msa0037040 AT5G50330.1 26.846 298 205 7 203 494 74 364 1.29e-22 102
Msa0037040 AT4G24810.3 25.397 378 255 10 203 564 31 397 1.44e-21 99.0
Msa0037040 AT5G24810.1 26.836 354 216 11 186 522 91 418 1.10e-20 98.6
Msa0037040 AT1G65950.2 30.078 256 156 6 208 457 113 351 6.70e-20 94.0
Msa0037040 AT1G65950.1 30.078 256 156 6 208 457 113 351 1.66e-19 93.6
Msa0037040 AT1G61640.3 29.110 292 169 7 196 464 212 488 3.74e-19 92.8
Msa0037040 AT1G61640.1 29.110 292 169 7 196 464 212 488 4.37e-19 92.4
Msa0037040 AT5G50330.2 24.662 296 198 6 203 494 74 348 3.51e-18 89.0
Msa0037040 AT2G40090.1 26.266 316 187 9 197 493 92 380 8.85e-18 88.2
Msa0037040 AT4G01660.1 29.528 254 155 6 209 457 240 474 1.64e-17 87.4
Msa0037040 AT5G24810.2 25.195 385 214 12 186 522 91 449 8.83e-17 85.9
Msa0037040 AT1G11390.1 25.882 340 214 6 196 512 215 539 1.62e-16 84.3
Msa0037040 AT1G61640.2 28.505 214 138 3 196 397 212 422 1.45e-12 71.2

Find 247 sgRNAs with CRISPR-Local

Find 775 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACATCTGAATATAATTT+TGG 0.070427 1_1:+65952900 Msa0037040:CDS
CGCTTAGGTGCATCGAATAT+TGG 0.197319 1_1:-65960495 None:intergenic
GATAATATTGTTCTCTCTTT+TGG 0.225573 1_1:-65960573 None:intergenic
ATGATTCTTCTTCTTCTTAC+TGG 0.232543 1_1:-65950065 None:intergenic
CTTGGCCCCACATTTATAAA+AGG 0.243307 1_1:+65952951 Msa0037040:CDS
AATGTACCAGCGGCCTTATT+TGG 0.251143 1_1:-65959383 None:intergenic
AACAAAGTCATCAACTTTCT+TGG 0.258309 1_1:-65950200 None:intergenic
AAGATTCTTGAGGAAGAATT+AGG 0.261394 1_1:+65953604 Msa0037040:CDS
ATATCCCCTTCTGCATTTAT+TGG 0.267924 1_1:-65952870 None:intergenic
TGAATATTCAGTAGAGTTTC+CGG 0.271670 1_1:-65954454 None:intergenic
AAGAAGAATCATTCGAATTT+CGG 0.277484 1_1:+65950076 Msa0037040:CDS
TGCACTTCATCAGGAGAAAT+AGG 0.278748 1_1:+65955045 Msa0037040:CDS
TCTCAAAGCGACACCATCTT+TGG 0.295707 1_1:-65959441 None:intergenic
ATATCTACATTCTTCGCCTT+GGG 0.302444 1_1:+65953893 Msa0037040:CDS
TCTATCATTTGTCTAAGATT+TGG 0.302633 1_1:+65951485 Msa0037040:CDS
CGCCTTTATGCTGATGAGCT+TGG 0.302788 1_1:+65954053 Msa0037040:CDS
TCAGGAACTGGAACAGGCCT+TGG 0.303137 1_1:+65955479 Msa0037040:intron
GCGGTCAGTATTCGGACTTC+AGG 0.303213 1_1:+65952831 Msa0037040:CDS
CCCCGATCAATCACCAAATA+AGG 0.305779 1_1:+65959370 Msa0037040:CDS
GTCGCTGTCTGAGGCTTACC+TGG 0.312293 1_1:+65960470 Msa0037040:CDS
CAGCAAATGCATTGAAGTTT+CGG 0.313861 1_1:+65954114 Msa0037040:CDS
ACCACCACGTGCCGCAAATT+AGG 0.319993 1_1:-65953865 None:intergenic
CCTCTGCTGCGGTCAGTATT+CGG 0.326971 1_1:+65952823 Msa0037040:CDS
TGTCAACGCTCTGATTGATA+TGG 0.326993 1_1:+65955257 Msa0037040:CDS
TCCTGAGGATCATAAGTTTC+AGG 0.329741 1_1:-65951520 None:intergenic
TACTTTGCCCGTACTATTGA+TGG 0.330351 1_1:+65953814 Msa0037040:CDS
ATTTAGAGATCGGCGACTTC+GGG 0.332080 1_1:+65960326 Msa0037040:CDS
CAGGAACTGGAACAGGCCTT+GGG 0.332682 1_1:+65955480 Msa0037040:intron
CGGAAAATTCAGGTCAATAA+AGG 0.332703 1_1:+65954949 Msa0037040:intron
GCTTAGGTGCATCGAATATT+GGG 0.343164 1_1:-65960494 None:intergenic
GCCTTTATGCTGATGAGCTT+GGG 0.344950 1_1:+65954054 Msa0037040:CDS
AGGAGGATAGCATTATCTTT+TGG 0.344966 1_1:+65960660 Msa0037040:three_prime_UTR
AAGGAAACAATGCTTAATCT+TGG 0.346515 1_1:+65952933 Msa0037040:CDS
AATAAATGCAGAAGGGGATA+TGG 0.349276 1_1:+65952872 Msa0037040:CDS
CGAGCTTTGTCCGGATCATA+TGG 0.352141 1_1:+65961035 Msa0037040:three_prime_UTR
CGCTCTGATTGATATGGATA+TGG 0.356251 1_1:+65955263 Msa0037040:CDS
AGAAAGTTGATGACTTTGTT+TGG 0.358358 1_1:+65950203 Msa0037040:CDS
GCCTTATTTGGTGATTGATC+GGG 0.365408 1_1:-65959371 None:intergenic
AAGTCGCCGATCTCTAAATA+AGG 0.366706 1_1:-65960322 None:intergenic
TGAATTGGATTACACTTTAG+AGG 0.372142 1_1:+65954091 Msa0037040:CDS
CTCCTTCTTGGCCTGAGCCT+TGG 0.373407 1_1:+65950266 Msa0037040:CDS
AGCAAATGCATTGAAGTTTC+GGG 0.373912 1_1:+65954115 Msa0037040:CDS
TGGCCTGAGCCTTGGTATCC+AGG 0.374120 1_1:+65950274 Msa0037040:CDS
GAGGGTAAAATATGTGGTAT+AGG 0.377701 1_1:+65960640 Msa0037040:three_prime_UTR
GTCGTTGTGGCCCGTACAAA+GGG 0.379758 1_1:-65950037 None:intergenic
AGAAAATTAAGAGTTGATCT+TGG 0.382686 1_1:+65960923 Msa0037040:three_prime_UTR
CTCCGTCACTCCCCTTTGTA+CGG 0.383374 1_1:+65950026 Msa0037040:CDS
ATGAAACTATACATACTTGT+AGG 0.383480 1_1:-65960761 None:intergenic
ATCTCAACACCAATGATATC+TGG 0.388598 1_1:-65953203 None:intergenic
TTGAATCGGTCCTATGTAGA+TGG 0.389192 1_1:+65960858 Msa0037040:three_prime_UTR
CCTGTAGCCGCTGCATCATT+TGG 0.392651 1_1:+65953667 Msa0037040:CDS
CCAAGGGTGATGTTGGCTAA+TGG 0.399467 1_1:+65960237 Msa0037040:CDS
TCAACTTTCTTGGCAATTTG+AGG 0.413329 1_1:-65950190 None:intergenic
AGGAATGCGGAATGCATCAT+TGG 0.415328 1_1:-65950170 None:intergenic
CTATGACCTTGCAAAGTTGT+TGG 0.416875 1_1:-65960152 None:intergenic
GGCCTTATTTGGTGATTGAT+CGG 0.417516 1_1:-65959372 None:intergenic
TTGGTTCAACTTCTTGAAAC+GGG 0.421020 1_1:+65954985 Msa0037040:CDS
TATTTAGAGATCGGCGACTT+CGG 0.421417 1_1:+65960325 Msa0037040:CDS
GCACTTCATCAGGAGAAATA+GGG 0.422863 1_1:+65955046 Msa0037040:CDS
TTCATATAGTAAACGGTGAC+TGG 0.422996 1_1:+65955226 Msa0037040:CDS
GGAACTAGCAACAAAGAATC+TGG 0.428994 1_1:+65960258 Msa0037040:CDS
TGCAAATGCAAAACAAATCA+TGG 0.431494 1_1:-65960952 None:intergenic
AACTTGCGCTGCACTTCATC+AGG 0.431810 1_1:+65955036 Msa0037040:CDS
GCCCAAGCTCATCAGCATAA+AGG 0.431876 1_1:-65954055 None:intergenic
CATTCGAATTTCGGTCACTT+TGG 0.432460 1_1:+65950085 Msa0037040:CDS
AGAAGTTTCCGAACGACGTA+GGG 0.435307 1_1:-65956775 None:intergenic
AATCATTACAGCTTCAGCTT+TGG 0.437545 1_1:+65960428 Msa0037040:CDS
CCAAATGATGCAGCGGCTAC+AGG 0.437648 1_1:-65953667 None:intergenic
TTCAGCTTTGGCAAGCCATC+GGG 0.439915 1_1:+65960440 Msa0037040:CDS
CTGCCTACCCCTACGTCGTT+CGG 0.442748 1_1:+65956767 Msa0037040:CDS
GATATCTACATTCTTCGCCT+TGG 0.445130 1_1:+65953892 Msa0037040:CDS
TTTCCATGTTCTTGAGAGTA+GGG 0.450283 1_1:+65957212 Msa0037040:CDS
TCAATAGTTCATATAGTAAA+CGG 0.452061 1_1:+65955219 Msa0037040:CDS
CTTCAGCTTTGGCAAGCCAT+CGG 0.453322 1_1:+65960439 Msa0037040:CDS
TTAGTTATTAATCTTTGAAT+CGG 0.453635 1_1:+65960844 Msa0037040:three_prime_UTR
AGAGAAGTGATTGGTAGAAG+TGG 0.453650 1_1:-65949877 None:intergenic
GCCTGAAACTTATGATCCTC+AGG 0.454026 1_1:+65951519 Msa0037040:CDS
CGGTCAGTATTCGGACTTCA+GGG 0.454624 1_1:+65952832 Msa0037040:CDS
ATTGGTTCAACTTCTTGAAA+CGG 0.457244 1_1:+65954984 Msa0037040:CDS
CATGTATGATCTGAAGGCCT+TGG 0.459446 1_1:+65951444 Msa0037040:CDS
AACAAGGAAAATATTGCATT+CGG 0.460309 1_1:+65956816 Msa0037040:CDS
GGGCGGAGAGTGAAGAAGAT+TGG 0.463208 1_1:-65949984 None:intergenic
AAGTTCAGCGTCCTAATTTG+CGG 0.464669 1_1:+65953854 Msa0037040:CDS
AAGGCATCAATTCGCTATGC+TGG 0.464750 1_1:+65955194 Msa0037040:CDS
TTTGCGGCACGTGGTGGTGC+GGG 0.465918 1_1:+65953870 Msa0037040:CDS
TTCCTGATGTGAAGTTCAGC+AGG 0.467694 1_1:+65955526 Msa0037040:CDS
GACATGGAGTTTCTTAAAAG+AGG 0.468586 1_1:+65950124 Msa0037040:CDS
CAACAGTTTACCTTCGAAAG+AGG 0.469059 1_1:-65956539 None:intergenic
GCGAGGGTCACTCTTTCTCT+TGG 0.472103 1_1:-65954033 None:intergenic
CGTCGTTGTGGCCCGTACAA+AGG 0.473173 1_1:-65950038 None:intergenic
TCCACGAGGCCAGATATCAT+TGG 0.474665 1_1:+65953194 Msa0037040:CDS
ACATGGAAAGCCTTTGCCAT+TGG 0.476595 1_1:-65957198 None:intergenic
ACTCTACTGAATATTCAGAT+AGG 0.478793 1_1:+65954460 Msa0037040:CDS
TATTGTTGCAGTTCAGATCC+AGG 0.483960 1_1:+65960735 Msa0037040:three_prime_UTR
TTCTTCTTCTTCTTACTGGA+CGG 0.484083 1_1:-65950061 None:intergenic
TCAATATCCAAGGGTGATGT+TGG 0.487445 1_1:+65960230 Msa0037040:CDS
CCTATGTAGATGGACTGATT+TGG 0.487509 1_1:+65960868 Msa0037040:three_prime_UTR
TAGCCGATGCATTGTGTCAA+TGG 0.489855 1_1:+65960172 Msa0037040:CDS
TGAGACCAGGGACAAATATC+CGG 0.490744 1_1:+65955286 Msa0037040:CDS
AAGAGCCACAACATGGGGTC+TGG 0.491274 1_1:-65951563 None:intergenic
ATAGCAACAGTCCTAGGAAA+AGG 0.494140 1_1:-65953580 None:intergenic
AGCCGCTGCATCATTTGGTC+AGG 0.494783 1_1:+65953672 Msa0037040:CDS
GGTGCTGTCACCGTCGCCAT+GGG 0.494929 1_1:-65950004 None:intergenic
AGGTGCTGTCACCGTCGCCA+TGG 0.497583 1_1:-65950005 None:intergenic
TACTGATGCTGCGGTTCTGT+TGG 0.499622 1_1:+65960391 Msa0037040:CDS
GATACAGAGATTAAATCTGT+TGG 0.500752 1_1:-65954429 None:intergenic
ATTTGCGGCACGTGGTGGTG+CGG 0.505284 1_1:+65953869 Msa0037040:CDS
TATGCTGATGAGCTTGGGCG+AGG 0.505625 1_1:+65954059 Msa0037040:CDS
ATATTTCCTTATTTAGAGAT+CGG 0.506293 1_1:+65960316 Msa0037040:CDS
TGAAACTATACATACTTGTA+GGG 0.506365 1_1:-65960760 None:intergenic
CTTTCCATGTTCTTGAGAGT+AGG 0.507675 1_1:+65957211 Msa0037040:CDS
CATTAACACCATCAATAGTA+CGG 0.508937 1_1:-65953822 None:intergenic
CCTTATTTGGTGATTGATCG+GGG 0.510164 1_1:-65959370 None:intergenic
CGGAGAGTGAAGAAGATTGG+AGG 0.512475 1_1:-65949981 None:intergenic
GGATCATAAGTTTCAGGCAG+TGG 0.515375 1_1:-65951514 None:intergenic
GAAGTGCAGCGCAAGTTACC+AGG 0.517043 1_1:-65955030 None:intergenic
ATCTTCATAGCAACAGTCCT+AGG 0.517132 1_1:-65953586 None:intergenic
TCCTAATTTGCGGCACGTGG+TGG 0.517274 1_1:+65953864 Msa0037040:CDS
GGTGTTGTTGCATGTGAAAG+TGG 0.517465 1_1:-65949915 None:intergenic
TCACTCTCCGCCCATGGCGA+CGG 0.520900 1_1:+65949994 Msa0037040:exon
GGTAAAATATGTGGTATAGG+AGG 0.522026 1_1:+65960643 Msa0037040:three_prime_UTR
ACCCTGCTGAACTTCACATC+AGG 0.522392 1_1:-65955528 None:intergenic
CCATTAGCCAACATCACCCT+TGG 0.523566 1_1:-65960237 None:intergenic
TCCGTCACTCCCCTTTGTAC+GGG 0.523792 1_1:+65950027 Msa0037040:CDS
ACTGCATATCTCTTACGCTT+AGG 0.523975 1_1:-65960510 None:intergenic
GGTTGTTCTGTCGCTGTCTG+AGG 0.527420 1_1:+65960461 Msa0037040:CDS
GGAAGAATTAGGAGCTCCCC+TGG 0.528295 1_1:+65953615 Msa0037040:CDS
GGTACTTCTAAATCGAAAGA+AGG 0.531526 1_1:+65957171 Msa0037040:intron
CAGTGCCAGACCCCATGTTG+TGG 0.532263 1_1:+65951558 Msa0037040:CDS
TTTACCTTCGAAAGAGGCTA+GGG 0.534132 1_1:-65956533 None:intergenic
GTGGAATACATTTACCGCAC+TGG 0.535053 1_1:-65949768 None:intergenic
AAGACAAGTGTATAATATGC+TGG 0.535650 1_1:-65956505 None:intergenic
AGTAAAATGAGTAATATCAA+TGG 0.536833 1_1:-65960986 None:intergenic
TTTCGGTCACTTTGGTCAAG+TGG 0.538257 1_1:+65950093 Msa0037040:CDS
CAGCGCAAGTTACCAGGATG+TGG 0.540469 1_1:-65955024 None:intergenic
ATACATACTTGTAGGGTACC+TGG 0.541187 1_1:-65960753 None:intergenic
GTTTACCTTCGAAAGAGGCT+AGG 0.541274 1_1:-65956534 None:intergenic
TCTTGAGAGTAGGGGCAACT+AGG 0.543805 1_1:+65957221 Msa0037040:CDS
TGTATAAGACCCATATGATC+CGG 0.543848 1_1:-65961045 None:intergenic
TAAAGGTGTTGAAGCAACAT+TGG 0.544378 1_1:+65954966 Msa0037040:CDS
AAGGAAATATAATCATATGC+AGG 0.544409 1_1:-65960303 None:intergenic
ATACCTGGATACCAAGGCTC+AGG 0.544507 1_1:-65950277 None:intergenic
TCAAGTGGTTCGCAAGGACA+TGG 0.546032 1_1:+65950108 Msa0037040:CDS
GTGTATAATATGCTGGCATA+CGG 0.548041 1_1:-65956498 None:intergenic
TTTCTACCAATAAATGCAGA+AGG 0.548114 1_1:+65952864 Msa0037040:CDS
TTTGCTCATGTATGATCTGA+AGG 0.548209 1_1:+65951438 Msa0037040:CDS
AGTTCTGACCATGGAGTGGA+TGG 0.549599 1_1:+65954395 Msa0037040:CDS
CTTACTGGACGGCGTCGTTG+TGG 0.551146 1_1:-65950050 None:intergenic
GATTTAATCTCTGTATCTAC+CGG 0.551787 1_1:+65954435 Msa0037040:CDS
TGGAAAACGAAGTAGCTTGA+GGG 0.552817 1_1:-65950243 None:intergenic
GTAACTAGCATATGCTTCCA+AGG 0.559404 1_1:-65951461 None:intergenic
TCTTCTTCACTCTCCGCCCA+TGG 0.559733 1_1:+65949988 Msa0037040:exon
CAATGGATGATTAAATTATG+TGG 0.560480 1_1:+65960189 Msa0037040:CDS
TCGCTGTCTGAGGCTTACCT+GGG 0.560912 1_1:+65960471 Msa0037040:CDS
GCGTCCTAATTTGCGGCACG+TGG 0.562426 1_1:+65953861 Msa0037040:CDS
TACCAAGGCTCAGGCCAAGA+AGG 0.562610 1_1:-65950268 None:intergenic
GCTGTCACCGTCGCCATGGG+CGG 0.563192 1_1:-65950001 None:intergenic
TTCCTCCTTTGCCTCTGCTG+CGG 0.563229 1_1:+65952812 Msa0037040:CDS
CTTAAAAGAGGATTTAACAA+TGG 0.564765 1_1:+65950136 Msa0037040:CDS
GCCCGTACAAAGGGGAGTGA+CGG 0.564993 1_1:-65950028 None:intergenic
TATCTACATTCTTCGCCTTG+GGG 0.565780 1_1:+65953894 Msa0037040:CDS
GTTGTTGATGTGTGGTTGTG+TGG 0.566396 1_1:-65949844 None:intergenic
TTACAGATACTCAATATCCA+AGG 0.566639 1_1:+65960220 Msa0037040:CDS
CCAAATCAGTCCATCTACAT+AGG 0.568195 1_1:-65960868 None:intergenic
ATTAACACCATCAATAGTAC+GGG 0.568220 1_1:-65953821 None:intergenic
ACTGACCGCAGCAGAGGCAA+AGG 0.569019 1_1:-65952817 None:intergenic
TGACCTTGCAAAGTTGTTGG+CGG 0.570715 1_1:-65960149 None:intergenic
AAGATGGTGTCGCTTTGAGA+AGG 0.574327 1_1:+65959444 Msa0037040:CDS
ATTTAACAATGGTGTTGAGT+GGG 0.578190 1_1:+65950147 Msa0037040:CDS
TGTGAGGAGGGTAAAATATG+TGG 0.578298 1_1:+65960634 Msa0037040:three_prime_UTR
AAATATCCGGCTTGTTACCA+TGG 0.579205 1_1:+65955299 Msa0037040:CDS
GATATGGATATGGTGAGACC+AGG 0.579982 1_1:+65955273 Msa0037040:CDS
AGGCTCAGGCCAAGAAGGAG+TGG 0.580117 1_1:-65950263 None:intergenic
GTGCATCGAATATTGGGCCC+AGG 0.580938 1_1:-65960488 None:intergenic
TTCCATGTTCTTGAGAGTAG+GGG 0.581214 1_1:+65957213 Msa0037040:CDS
GGGGAAGTGGAATTTAAGGA+TGG 0.582098 1_1:+65955501 Msa0037040:CDS
AATGGTCTCGAAGGAGGGAA+AGG 0.583362 1_1:+65960122 Msa0037040:CDS
AGCTTCAATAATCAGAGCAA+TGG 0.583448 1_1:+65960104 Msa0037040:CDS
ATCGAAAGAAGGAGTTCCAA+TGG 0.583885 1_1:+65957182 Msa0037040:CDS
GATTTAACAATGGTGTTGAG+TGG 0.584443 1_1:+65950146 Msa0037040:CDS
TTCTACCAATAAATGCAGAA+GGG 0.585527 1_1:+65952865 Msa0037040:CDS
TGAAGGCAATTAGTGTGAGG+AGG 0.586338 1_1:+65960621 Msa0037040:three_prime_UTR
TAGAAGTTTCCGAACGACGT+AGG 0.587156 1_1:-65956776 None:intergenic
CAATCACCAAATAAGGCCGC+TGG 0.587455 1_1:+65959377 Msa0037040:CDS
AATGCAAAACAAATCATGGA+TGG 0.588081 1_1:-65960948 None:intergenic
TTTCCGAACGACGTAGGGGT+AGG 0.589875 1_1:-65956770 None:intergenic
TGTTGCTATGAAGATTCTTG+AGG 0.590651 1_1:+65953594 Msa0037040:CDS
CTTTGGTCAAGTGGTTCGCA+AGG 0.590685 1_1:+65950102 Msa0037040:CDS
TCTTGGCAATTTGAGGAATG+CGG 0.592196 1_1:-65950183 None:intergenic
CGATCCCTAGCCTCTTTCGA+AGG 0.594467 1_1:+65956529 Msa0037040:CDS
TAGTGTGAGTTGTTGATGTG+TGG 0.594689 1_1:-65949852 None:intergenic
GAAGGCAATTAGTGTGAGGA+GGG 0.595248 1_1:+65960622 Msa0037040:three_prime_UTR
CATCCGCCAACAACTTTGCA+AGG 0.595666 1_1:+65960146 Msa0037040:CDS
CAGAGCAATGGTCTCGAAGG+AGG 0.596020 1_1:+65960116 Msa0037040:CDS
TCATATAGTAAACGGTGACT+GGG 0.596520 1_1:+65955227 Msa0037040:CDS
ACCAATGATATCTGGCCTCG+TGG 0.597219 1_1:-65953195 None:intergenic
TCTACCAATAAATGCAGAAG+GGG 0.597799 1_1:+65952866 Msa0037040:CDS
AGAAGGAGTTCCAATGGCAA+AGG 0.601481 1_1:+65957188 Msa0037040:CDS
ATTATACCATGGTAACAAGC+CGG 0.601997 1_1:-65955305 None:intergenic
GCATACGAAGAGCCACAACA+TGG 0.602003 1_1:-65951570 None:intergenic
AGCTCATCAGCATAAAGGCG+AGG 0.602089 1_1:-65954050 None:intergenic
GCAACAGTCCTAGGAAAAGG+AGG 0.604437 1_1:-65953577 None:intergenic
ACAAGCCGGATATTTGTCCC+TGG 0.605368 1_1:-65955291 None:intergenic
AGGAACTGGAACAGGCCTTG+GGG 0.606066 1_1:+65955481 Msa0037040:intron
CTTTGAAGGCAATTAGTGTG+AGG 0.606295 1_1:+65960618 Msa0037040:three_prime_UTR
GGAACTGGAACAGGCCTTGG+GGG 0.606857 1_1:+65955482 Msa0037040:intron
TTCACCGACCATCCACTCCA+TGG 0.607884 1_1:-65954403 None:intergenic
TGCCCCTACTCTCAAGAACA+TGG 0.608994 1_1:-65957215 None:intergenic
CAGAAAACTCAGCCGCAACA+AGG 0.609737 1_1:+65956800 Msa0037040:CDS
ATACACGCCGATCCACATCC+TGG 0.610436 1_1:+65955012 Msa0037040:CDS
TGATTGTGAAGAGAAGTGAT+TGG 0.610850 1_1:-65949886 None:intergenic
AATCAGAGCAATGGTCTCGA+AGG 0.613050 1_1:+65960113 Msa0037040:CDS
GTGGAAAACGAAGTAGCTTG+AGG 0.615242 1_1:-65950244 None:intergenic
CCGAATACTGACCGCAGCAG+AGG 0.615782 1_1:-65952823 None:intergenic
GTCATAAAATACTGATGCTG+CGG 0.615922 1_1:+65960382 Msa0037040:CDS
AGAGCAATGGTCTCGAAGGA+GGG 0.617538 1_1:+65960117 Msa0037040:CDS
CATTGGTGTTGAGATGTCCA+AGG 0.619866 1_1:+65953211 Msa0037040:CDS
AAGCTGTAATGATTATAACA+AGG 0.621418 1_1:-65960419 None:intergenic
AGCTGTAATGATTATAACAA+GGG 0.623250 1_1:-65960418 None:intergenic
TGCAATATCAAATGTACCAG+CGG 0.626529 1_1:-65959393 None:intergenic
AGAGAGTTCTGACCATGGAG+TGG 0.628466 1_1:+65954391 Msa0037040:CDS
GACCGCAGCAGAGGCAAAGG+AGG 0.629609 1_1:-65952814 None:intergenic
ATGATTAAATTATGTGGACA+AGG 0.630789 1_1:+65960195 Msa0037040:CDS
AAAGCGACACCATCTTTGGA+TGG 0.633807 1_1:-65959437 None:intergenic
AAATAGTGAGCGACATCCTG+AGG 0.636549 1_1:-65951535 None:intergenic
CAAGTTACCAGGATGTGGAT+CGG 0.641080 1_1:-65955019 None:intergenic
GCTCATCAGCATAAAGGCGA+GGG 0.644522 1_1:-65954049 None:intergenic
CAATTTCATCAACTTAACTG+TGG 0.647229 1_1:-65949787 None:intergenic
GGTATTATACCTGGATACCA+AGG 0.648103 1_1:-65950283 None:intergenic
CATCCATTGACACAATGCAT+CGG 0.650171 1_1:-65960175 None:intergenic
CAACAGTCCTAGGAAAAGGA+GGG 0.650423 1_1:-65953576 None:intergenic
TACAGATACTCAATATCCAA+GGG 0.650600 1_1:+65960221 Msa0037040:CDS
GAAGTTTCCGAACGACGTAG+GGG 0.653962 1_1:-65956774 None:intergenic
CGTACAAAGGGGAGTGACGG+AGG 0.654757 1_1:-65950025 None:intergenic
CATACGAAGAGCCACAACAT+GGG 0.657120 1_1:-65951569 None:intergenic
ATACGAAGAGCCACAACATG+GGG 0.666082 1_1:-65951568 None:intergenic
TACCTGACCAAATGATGCAG+CGG 0.666204 1_1:-65953674 None:intergenic
CTTATTTGGTGATTGATCGG+GGG 0.668914 1_1:-65959369 None:intergenic
TGTGGCTCTTCGTATGCTCG+AGG 0.672887 1_1:+65951576 Msa0037040:CDS
ATTTCTCATGTTGACCAGTG+CGG 0.673101 1_1:+65949754 Msa0037040:five_prime_UTR
TCCTGATGTGAAGTTCAGCA+GGG 0.675998 1_1:+65955527 Msa0037040:CDS
CTGACCATGGAGTGGATGGT+CGG 0.681835 1_1:+65954399 Msa0037040:CDS
TCGAAAGAGAGTTCTGACCA+TGG 0.684841 1_1:+65954386 Msa0037040:CDS
ATATGGATATGGTGAGACCA+GGG 0.688201 1_1:+65955274 Msa0037040:CDS
TCGTTGTGGCCCGTACAAAG+GGG 0.704631 1_1:-65950036 None:intergenic
ACAGCGACAGAACAACCCGA+TGG 0.722304 1_1:-65960455 None:intergenic
TTGGTCAGTCACTTTCCACG+AGG 0.748373 1_1:+65953180 Msa0037040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTCAATTTTTTTTCT+TGG - chr1_1:65950307-65950326 None:intergenic 10.0%
!! AATGGTATATAATTATATAT+AGG + chr1_1:65951827-65951846 Msa0037040:intron 10.0%
!! ATGGTATATAATTATATATA+GGG + chr1_1:65951828-65951847 Msa0037040:intron 10.0%
!!! ATTTTCAAAATAAAAGAAAA+AGG - chr1_1:65951974-65951993 None:intergenic 10.0%
!!! TTTCAAAATTTTGTTTATAA+GGG + chr1_1:65952027-65952046 Msa0037040:intron 10.0%
!! ATCTATCAAAAATTTAATAT+AGG - chr1_1:65952708-65952727 None:intergenic 10.0%
!!! CTTAAATGTAAAAATATTTT+TGG - chr1_1:65954366-65954385 None:intergenic 10.0%
!! ATACAATCTAAATTATTTAT+TGG + chr1_1:65956562-65956581 Msa0037040:intron 10.0%
!! ACTGATATATAAAATAAAAT+TGG - chr1_1:65957705-65957724 None:intergenic 10.0%
!!! TGTTTTAATCTTTTTAATAA+AGG + chr1_1:65958272-65958291 Msa0037040:intron 10.0%
!!! TTTAATTTTTTCAATTAAGA+GGG - chr1_1:65958585-65958604 None:intergenic 10.0%
!!! TTTTAATTTTTTCAATTAAG+AGG - chr1_1:65958586-65958605 None:intergenic 10.0%
!! ATGAAATTTATAAAAAAGAA+TGG - chr1_1:65959874-65959893 None:intergenic 10.0%
!!! AAAATTGAATTTTTTGATTG+TGG + chr1_1:65950313-65950332 Msa0037040:intron 15.0%
!!! AAATTGAATTTTTTGATTGT+GGG + chr1_1:65950314-65950333 Msa0037040:intron 15.0%
!!! ATATTTTGAGATATTATAGA+TGG - chr1_1:65951677-65951696 None:intergenic 15.0%
!!! GTTTCAAAATTTTGTTTATA+AGG + chr1_1:65952026-65952045 Msa0037040:intron 15.0%
!!! TTCAAAATTTTGTTTATAAG+GGG + chr1_1:65952028-65952047 Msa0037040:intron 15.0%
!!! TTTCTTAGTAAATTTTTTAG+AGG + chr1_1:65952384-65952403 Msa0037040:intron 15.0%
!! AAAATGAAAATAACTCAATA+AGG - chr1_1:65952782-65952801 None:intergenic 15.0%
!!! TTATTGAGTTATTTTCATTT+TGG + chr1_1:65952781-65952800 Msa0037040:intron 15.0%
!!! AAAACATCTGAATATAATTT+TGG + chr1_1:65952900-65952919 Msa0037040:CDS 15.0%
!!! AAACATCTGAATATAATTTT+GGG + chr1_1:65952901-65952920 Msa0037040:CDS 15.0%
!! AATATAATTACATGAGTAAA+AGG + chr1_1:65954660-65954679 Msa0037040:intron 15.0%
!!! AATTTTCAGTTGAATAATAA+AGG - chr1_1:65954807-65954826 None:intergenic 15.0%
!!! ATTTTTTAAACTTGTATGAT+AGG + chr1_1:65955136-65955155 Msa0037040:intron 15.0%
!! CATATAAGAATGTTATTATT+TGG - chr1_1:65955375-65955394 None:intergenic 15.0%
!!! TTATTCTATGTTTTATTTTC+AGG + chr1_1:65955461-65955480 Msa0037040:intron 15.0%
!! AAGAATAAAACATTTCTATT+AGG + chr1_1:65955721-65955740 Msa0037040:intron 15.0%
!! TGATACAAAATAATGTATAT+AGG - chr1_1:65956617-65956636 None:intergenic 15.0%
!! TTATGTTAAGAAAAATTGAT+AGG + chr1_1:65957810-65957829 Msa0037040:intron 15.0%
!! TATGTTAAGAAAAATTGATA+GGG + chr1_1:65957811-65957830 Msa0037040:intron 15.0%
!!! AATGAGAGAATTTTTTTTTA+AGG - chr1_1:65957966-65957985 None:intergenic 15.0%
!!! ATTTGGTTATGATTATTTTT+TGG + chr1_1:65958088-65958107 Msa0037040:intron 15.0%
!!! AAAATGGATTTATGTATTTT+TGG + chr1_1:65958169-65958188 Msa0037040:intron 15.0%
!!! AAATGGATTTATGTATTTTT+GGG + chr1_1:65958170-65958189 Msa0037040:intron 15.0%
!!! TTAATCTTTTTAATAAAGGA+AGG + chr1_1:65958276-65958295 Msa0037040:intron 15.0%
!! TATAACATAAATGAGTAAAT+CGG + chr1_1:65958317-65958336 Msa0037040:intron 15.0%
!! TAAATTAAGTTAAAGTTGTT+TGG - chr1_1:65958407-65958426 None:intergenic 15.0%
!!! GTTTGTTTATTTGTTATATA+TGG + chr1_1:65959635-65959654 Msa0037040:intron 15.0%
!! AAATTTATAAAAAAGAATGG+AGG - chr1_1:65959871-65959890 None:intergenic 15.0%
!! TTAGTTATTAATCTTTGAAT+CGG + chr1_1:65960844-65960863 Msa0037040:three_prime_UTR 15.0%
!!! AATTGAATTTTTTGATTGTG+GGG + chr1_1:65950315-65950334 Msa0037040:intron 20.0%
!!! ATATATAAGCTGTTTTCATA+AGG - chr1_1:65950869-65950888 None:intergenic 20.0%
!! AATGTGATCTTCTAATTAAT+AGG - chr1_1:65951171-65951190 None:intergenic 20.0%
!! CTACAAAAGTAATTAGATAT+AGG - chr1_1:65951268-65951287 None:intergenic 20.0%
!! CTAAAAGGAAAAGTTAAAAA+AGG - chr1_1:65951701-65951720 None:intergenic 20.0%
!! ATTTAAATAAGTAGGTTACA+TGG - chr1_1:65951746-65951765 None:intergenic 20.0%
!! GTAACCTACTTATTTAAATA+TGG + chr1_1:65951747-65951766 Msa0037040:intron 20.0%
!! ATAATTATATATAGGGACAA+AGG + chr1_1:65951835-65951854 Msa0037040:intron 20.0%
!! TTGAAACTATTTACATAAAG+AGG - chr1_1:65952013-65952032 None:intergenic 20.0%
!! CTCAATTCTTATTATGTAAA+TGG - chr1_1:65952085-65952104 None:intergenic 20.0%
!! AATGAATGTAAAAAGGATAT+TGG - chr1_1:65953145-65953164 None:intergenic 20.0%
!! TCAATCAAATGAATGTAAAA+AGG - chr1_1:65953152-65953171 None:intergenic 20.0%
!! CTACATTTATTTATAAGTGT+TGG + chr1_1:65953743-65953762 Msa0037040:intron 20.0%
!!! CTTATTTGATTACATTTTCT+AGG + chr1_1:65953789-65953808 Msa0037040:intron 20.0%
!! TGTAAAAATCTTGAAAATCT+TGG + chr1_1:65954563-65954582 Msa0037040:intron 20.0%
!!! TGTTTACTTTTATTTCACAT+CGG + chr1_1:65954929-65954948 Msa0037040:intron 20.0%
!! TCAATAGTTCATATAGTAAA+CGG + chr1_1:65955219-65955238 Msa0037040:CDS 20.0%
!!! CTTTAATTATGTTTAGTTTG+AGG - chr1_1:65955704-65955723 None:intergenic 20.0%
!! TTCATATATTTCACATTCTT+CGG - chr1_1:65956264-65956283 None:intergenic 20.0%
!! TTCATATATTTCACATTCTT+CGG - chr1_1:65956264-65956283 None:intergenic 20.0%
!!! TTTTCTATAAATTTTCCTGA+AGG + chr1_1:65956435-65956454 Msa0037040:intron 20.0%
!!! TATTATTTTTCTTCTCATAG+TGG - chr1_1:65956937-65956956 None:intergenic 20.0%
!! TTGCATATTTATCAATATCT+TGG + chr1_1:65957052-65957071 Msa0037040:intron 20.0%
!!! TTTTACTTTAAAGAAGAAGT+AGG + chr1_1:65957409-65957428 Msa0037040:intron 20.0%
!!! TTTACTTTAAAGAAGAAGTA+GGG + chr1_1:65957410-65957429 Msa0037040:intron 20.0%
!!! AAAAATAAGTGACTTGTTTT+AGG - chr1_1:65957462-65957481 None:intergenic 20.0%
!! AAGAAGAAAAATGTAGTTAA+AGG + chr1_1:65957483-65957502 Msa0037040:intron 20.0%
!! ATAAAAAATTGTCTTTAGCA+GGG - chr1_1:65957576-65957595 None:intergenic 20.0%
!! AATAAAAAATTGTCTTTAGC+AGG - chr1_1:65957577-65957596 None:intergenic 20.0%
!! ATGCAAAAAATTGAATAAAC+TGG - chr1_1:65957651-65957670 None:intergenic 20.0%
!!! ATAAAAAAGAAAAGTGTCAA+CGG - chr1_1:65957869-65957888 None:intergenic 20.0%
!! TCAATAAAATCTGGATTTAT+AGG + chr1_1:65958207-65958226 Msa0037040:intron 20.0%
!!! ACTTTTTTTCCTTTCATTTT+TGG + chr1_1:65958874-65958893 Msa0037040:intron 20.0%
!!! TTACTAGGATATAGTATTTT+GGG + chr1_1:65958923-65958942 Msa0037040:intron 20.0%
!!! TGAAATATTTCTTTTATGCA+TGG + chr1_1:65960067-65960086 Msa0037040:intron 20.0%
!!! ATATTTCCTTATTTAGAGAT+CGG + chr1_1:65960316-65960335 Msa0037040:CDS 20.0%
!!! CTAAAACATTTTTACTTTGT+TGG - chr1_1:65960598-65960617 None:intergenic 20.0%
!!! TAAAAATGTTTTAGCTTTGA+AGG + chr1_1:65960604-65960623 Msa0037040:three_prime_UTR 20.0%
!! AGTAAAATGAGTAATATCAA+TGG - chr1_1:65960989-65961008 None:intergenic 20.0%
!!! GAAAAAGAAGCATTTATTGT+TGG - chr1_1:65949939-65949958 None:intergenic 25.0%
! AAGAAGAATCATTCGAATTT+CGG + chr1_1:65950076-65950095 Msa0037040:CDS 25.0%
! CTTAAAAGAGGATTTAACAA+TGG + chr1_1:65950136-65950155 Msa0037040:CDS 25.0%
!!! TTTTTTCTTGGTATTATACC+TGG - chr1_1:65950295-65950314 None:intergenic 25.0%
!! TGAAAGTTTGTTTGATGAAA+TGG + chr1_1:65950369-65950388 Msa0037040:intron 25.0%
!! GAAAGTTTGTTTGATGAAAT+GGG + chr1_1:65950370-65950389 Msa0037040:intron 25.0%
!!! TTCAATCTTTAGAGTGTTAT+CGG + chr1_1:65950525-65950544 Msa0037040:intron 25.0%
!!! GAAAAACGTTTATCACTTTT+CGG - chr1_1:65950644-65950663 None:intergenic 25.0%
!! TATAAGCACTTAGACTTTTT+GGG + chr1_1:65950771-65950790 Msa0037040:intron 25.0%
!! TTATCTTGTTTAAGCTTTCA+AGG + chr1_1:65950840-65950859 Msa0037040:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr1_1:65950936-65950955 Msa0037040:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr1_1:65950937-65950956 Msa0037040:intron 25.0%
! TTTGAATTTCGCCATTATAA+GGG + chr1_1:65951123-65951142 Msa0037040:intron 25.0%
!!! AAACTTTTGGAAAATGAACT+TGG + chr1_1:65951204-65951223 Msa0037040:intron 25.0%
!!! AAGAGGTATTCTTAAAGATT+TGG + chr1_1:65951238-65951257 Msa0037040:intron 25.0%
! ATGTCTTAACTGAGATTATA+TGG + chr1_1:65951288-65951307 Msa0037040:intron 25.0%
!! TCTATCATTTGTCTAAGATT+TGG + chr1_1:65951485-65951504 Msa0037040:CDS 25.0%
! GAGATATTATAGATGGAAAT+TGG - chr1_1:65951670-65951689 None:intergenic 25.0%
! AAGGCCATATTTAAATAAGT+AGG - chr1_1:65951754-65951773 None:intergenic 25.0%
! TTAAGAACTATACAATAGCT+TGG + chr1_1:65951927-65951946 Msa0037040:intron 25.0%
! ACATAACGATATAGAGTTAT+TGG + chr1_1:65952355-65952374 Msa0037040:intron 25.0%
! AAAATCTTCCAACTTCAATT+GGG - chr1_1:65952534-65952553 None:intergenic 25.0%
! GATTGCATCTATGTATTATA+TGG + chr1_1:65952570-65952589 Msa0037040:intron 25.0%
!!! CTTTTTTAAGAATTCCATGT+AGG + chr1_1:65952656-65952675 Msa0037040:intron 25.0%
!! ATGCGTTTGAAATTGATTAT+AGG + chr1_1:65952726-65952745 Msa0037040:intron 25.0%
!!! TGAGTTATTTTCATTTTGGA+AGG + chr1_1:65952785-65952804 Msa0037040:intron 25.0%
!!! ATCTGAATATAATTTTGGGT+TGG + chr1_1:65952905-65952924 Msa0037040:CDS 25.0%
!!! TAATTTTGGGTTGGTTTTAA+AGG + chr1_1:65952914-65952933 Msa0037040:CDS 25.0%
!! TCCTTACCTTTTATAAATGT+GGG - chr1_1:65952960-65952979 None:intergenic 25.0%
!! TACAGTTTTTAATCTAACCT+TGG - chr1_1:65953231-65953250 None:intergenic 25.0%
!! AATTTTCAGCACTAAACAAA+TGG - chr1_1:65953263-65953282 None:intergenic 25.0%
! ATTACAATCAATGTACATTC+GGG - chr1_1:65953458-65953477 None:intergenic 25.0%
! CATTACAATCAATGTACATT+CGG - chr1_1:65953459-65953478 None:intergenic 25.0%
! TAAATATTATTGGATGCATG+TGG + chr1_1:65953720-65953739 Msa0037040:intron 25.0%
!!! ATTTATAAGTGTTGGTATGA+TGG + chr1_1:65953751-65953770 Msa0037040:intron 25.0%
!!! TTTTGATGAGTTCTAGAATT+TGG + chr1_1:65954178-65954197 Msa0037040:intron 25.0%
!! TTAACATTTTGCTCTTTCAA+TGG + chr1_1:65954286-65954305 Msa0037040:intron 25.0%
!! TAAAGGTTGATTAAGCTAAT+GGG - chr1_1:65954790-65954809 None:intergenic 25.0%
!! ATAAAGGTTGATTAAGCTAA+TGG - chr1_1:65954791-65954810 None:intergenic 25.0%
! TTCCTTCGTCAAATATATAA+AGG + chr1_1:65955113-65955132 Msa0037040:intron 25.0%
! ATCCTTTATATATTTGACGA+AGG - chr1_1:65955118-65955137 None:intergenic 25.0%
!! AAACTTGTATGATAGGTTTT+TGG + chr1_1:65955143-65955162 Msa0037040:intron 25.0%
!!! TATGATAGGTTTTTGGATTT+TGG + chr1_1:65955150-65955169 Msa0037040:intron 25.0%
!!! TATGAACAGTTTTTGTTGTA+TGG + chr1_1:65955391-65955410 Msa0037040:intron 25.0%
!!! TATGTTTTATTTTCAGGAAC+TGG + chr1_1:65955467-65955486 Msa0037040:intron 25.0%
! TGCATATTCTATTTCATTCA+AGG - chr1_1:65955671-65955690 None:intergenic 25.0%
! GAGAAAAGTTTATAAAGAGA+AGG + chr1_1:65955893-65955912 Msa0037040:intron 25.0%
! TAAAAGCCTGTTGAAATTTA+GGG - chr1_1:65955961-65955980 None:intergenic 25.0%
! ATAAAAGCCTGTTGAAATTT+AGG - chr1_1:65955962-65955981 None:intergenic 25.0%
!! ATTTCAACAGGCTTTTATAT+TGG + chr1_1:65955964-65955983 Msa0037040:intron 25.0%
!! TTTCAACAGGCTTTTATATT+GGG + chr1_1:65955965-65955984 Msa0037040:intron 25.0%
!! TTTTGTAAGAGTTGTATTAC+AGG - chr1_1:65956014-65956033 None:intergenic 25.0%
!!! AATTTTTTCATGTTTGCTCA+TGG + chr1_1:65956374-65956393 Msa0037040:intron 25.0%
!!! ATTTGCTTTGGAACAATTTT+AGG + chr1_1:65956703-65956722 Msa0037040:intron 25.0%
! AACAAGGAAAATATTGCATT+CGG + chr1_1:65956816-65956835 Msa0037040:CDS 25.0%
! ATATGCAAAACTACAAAGAT+TGG - chr1_1:65957040-65957059 None:intergenic 25.0%
! GGAGAAAGAAAGTTTAAAAA+GGG - chr1_1:65957145-65957164 None:intergenic 25.0%
! AGGAGAAAGAAAGTTTAAAA+AGG - chr1_1:65957146-65957165 None:intergenic 25.0%
! AAAATTGCATGAAATGAACA+TGG - chr1_1:65957755-65957774 None:intergenic 25.0%
! TAACATAAAACAAAAGCTTG+AGG - chr1_1:65957798-65957817 None:intergenic 25.0%
! ATCATAACCAAATTTCAACT+CGG - chr1_1:65958081-65958100 None:intergenic 25.0%
!!! TAATTGATTTTTTTCGTGAG+TGG + chr1_1:65958120-65958139 Msa0037040:intron 25.0%
! GAGTGGAAAAAAGATAATTA+AGG + chr1_1:65958137-65958156 Msa0037040:intron 25.0%
! ATTAAGGCTATGTAGAAAAA+TGG + chr1_1:65958153-65958172 Msa0037040:intron 25.0%
!!! TATGTATTTTTGGGTTTATG+AGG + chr1_1:65958179-65958198 Msa0037040:intron 25.0%
!!! GAGGTTTTTTCAATAAAATC+TGG + chr1_1:65958198-65958217 Msa0037040:intron 25.0%
! AGATCCTATAAAAAGACTAA+GGG - chr1_1:65958498-65958517 None:intergenic 25.0%
! TAGATCCTATAAAAAGACTA+AGG - chr1_1:65958499-65958518 None:intergenic 25.0%
! TATAGATTCCTAAGTTCAAA+AGG - chr1_1:65958702-65958721 None:intergenic 25.0%
!! CTTACTAGGATATAGTATTT+TGG + chr1_1:65958922-65958941 Msa0037040:intron 25.0%
!! TACTAGGATATAGTATTTTG+GGG + chr1_1:65958924-65958943 Msa0037040:intron 25.0%
! CATTATCTCTCAAAATTATG+TGG + chr1_1:65959045-65959064 Msa0037040:intron 25.0%
! TCAAATGTTTCAGTATATGT+TGG - chr1_1:65959115-65959134 None:intergenic 25.0%
! ACATATACTGAAACATTTGA+AGG + chr1_1:65959115-65959134 Msa0037040:intron 25.0%
! TAATTTCTGTTATTGTAGCA+TGG + chr1_1:65959150-65959169 Msa0037040:intron 25.0%
! GAAAATGCATTACTTAACAA+TGG - chr1_1:65959213-65959232 None:intergenic 25.0%
! AAGAAAAAAAGATAACCAAG+AGG - chr1_1:65959546-65959565 None:intergenic 25.0%
!!! ATGTTGTTTCCAAATTTTCT+TGG + chr1_1:65959691-65959710 Msa0037040:intron 25.0%
! AGTTCGTTATAATTGTACAT+GGG + chr1_1:65959760-65959779 Msa0037040:intron 25.0%
! TATATATAGAAGGGTAACTT+AGG - chr1_1:65959964-65959983 None:intergenic 25.0%
! CAATGGATGATTAAATTATG+TGG + chr1_1:65960189-65960208 Msa0037040:CDS 25.0%
! ATGATTAAATTATGTGGACA+AGG + chr1_1:65960195-65960214 Msa0037040:CDS 25.0%
! AAGGAAATATAATCATATGC+AGG - chr1_1:65960306-65960325 None:intergenic 25.0%
! AGCTGTAATGATTATAACAA+GGG - chr1_1:65960421-65960440 None:intergenic 25.0%
! AAGCTGTAATGATTATAACA+AGG - chr1_1:65960422-65960441 None:intergenic 25.0%
!! GATAATATTGTTCTCTCTTT+TGG - chr1_1:65960576-65960595 None:intergenic 25.0%
!! ACACACTTACATTTTGTATA+TGG + chr1_1:65960685-65960704 Msa0037040:three_prime_UTR 25.0%
!! CACACTTACATTTTGTATAT+GGG + chr1_1:65960686-65960705 Msa0037040:three_prime_UTR 25.0%
!! ACACTTACATTTTGTATATG+GGG + chr1_1:65960687-65960706 Msa0037040:three_prime_UTR 25.0%
! TGAAACTATACATACTTGTA+GGG - chr1_1:65960763-65960782 None:intergenic 25.0%
! ATGAAACTATACATACTTGT+AGG - chr1_1:65960764-65960783 None:intergenic 25.0%
!! AGAAAATTAAGAGTTGATCT+TGG + chr1_1:65960923-65960942 Msa0037040:three_prime_UTR 25.0%
CAATTTCATCAACTTAACTG+TGG - chr1_1:65949790-65949809 None:intergenic 30.0%
ATGATTCTTCTTCTTCTTAC+TGG - chr1_1:65950068-65950087 None:intergenic 30.0%
! ATTTAACAATGGTGTTGAGT+GGG + chr1_1:65950147-65950166 Msa0037040:CDS 30.0%
AACAAAGTCATCAACTTTCT+TGG - chr1_1:65950203-65950222 None:intergenic 30.0%
!! AGAAAGTTGATGACTTTGTT+TGG + chr1_1:65950203-65950222 Msa0037040:CDS 30.0%
TTGTTTGATGAAATGGGTAT+TGG + chr1_1:65950376-65950395 Msa0037040:intron 30.0%
TGTTTGATGAAATGGGTATT+GGG + chr1_1:65950377-65950396 Msa0037040:intron 30.0%
TGGCTTGAAATGATTGTTAT+AGG + chr1_1:65950439-65950458 Msa0037040:intron 30.0%
!!! TGTTCTGTTTTTATGTGTGT+TGG + chr1_1:65950464-65950483 Msa0037040:intron 30.0%
!!! GTTCTGTTTTTATGTGTGTT+GGG + chr1_1:65950465-65950484 Msa0037040:intron 30.0%
! TTTTTATGTGTGTTGGGTAT+TGG + chr1_1:65950471-65950490 Msa0037040:intron 30.0%
!! TCAATCTTTAGAGTGTTATC+GGG + chr1_1:65950526-65950545 Msa0037040:intron 30.0%
ATAACTAGACTAACTGTGTT+CGG + chr1_1:65950579-65950598 Msa0037040:intron 30.0%
TAACATTCCACTTCATGAAA+TGG - chr1_1:65950666-65950685 None:intergenic 30.0%
! GTATAAGCACTTAGACTTTT+TGG + chr1_1:65950770-65950789 Msa0037040:intron 30.0%
!! AGACTTTTTGGGAGATATTA+CGG + chr1_1:65950782-65950801 Msa0037040:intron 30.0%
CTTTGAATTTCGCCATTATA+AGG + chr1_1:65951122-65951141 Msa0037040:intron 30.0%
ACAAAACAACACCCTTATAA+TGG - chr1_1:65951137-65951156 None:intergenic 30.0%
TTGGAAAATGAACTTGGATT+TGG + chr1_1:65951210-65951229 Msa0037040:intron 30.0%
! TTAATCTACAAGAGTGTAGT+AGG - chr1_1:65951317-65951336 None:intergenic 30.0%
CTAAAAGACAAAGAACGAAT+AGG - chr1_1:65951402-65951421 None:intergenic 30.0%
! CTATTCGTTCTTTGTCTTTT+AGG + chr1_1:65951400-65951419 Msa0037040:intron 30.0%
! AATTGGTTTCTGCAGATAAA+TGG + chr1_1:65951809-65951828 Msa0037040:intron 30.0%
ATATATAGGGACAAAGGTTT+AGG + chr1_1:65951841-65951860 Msa0037040:intron 30.0%
TCTTATTATGTAAATGGTCG+AGG - chr1_1:65952079-65952098 None:intergenic 30.0%
!! ATTTAGCTTGGTGGTAAATA+GGG - chr1_1:65952194-65952213 None:intergenic 30.0%
!! TATTTAGCTTGGTGGTAAAT+AGG - chr1_1:65952195-65952214 None:intergenic 30.0%
TATTTACCACCAAGCTAAAT+AGG + chr1_1:65952194-65952213 Msa0037040:intron 30.0%
AAAAAACCAATCACTAAGTG+GGG - chr1_1:65952313-65952332 None:intergenic 30.0%
CAAAAAACCAATCACTAAGT+GGG - chr1_1:65952314-65952333 None:intergenic 30.0%
TCAAAAAACCAATCACTAAG+TGG - chr1_1:65952315-65952334 None:intergenic 30.0%
GAAAATCTTCCAACTTCAAT+TGG - chr1_1:65952535-65952554 None:intergenic 30.0%
TCTATGTATTCTATCCTACA+TGG - chr1_1:65952673-65952692 None:intergenic 30.0%
TTTCTACCAATAAATGCAGA+AGG + chr1_1:65952864-65952883 Msa0037040:CDS 30.0%
TTCTACCAATAAATGCAGAA+GGG + chr1_1:65952865-65952884 Msa0037040:CDS 30.0%
AAGGAAACAATGCTTAATCT+TGG + chr1_1:65952933-65952952 Msa0037040:CDS 30.0%
! CCTTACCTTTTATAAATGTG+GGG - chr1_1:65952959-65952978 None:intergenic 30.0%
! CTCCTTACCTTTTATAAATG+TGG - chr1_1:65952961-65952980 None:intergenic 30.0%
CACATTTATAAAAGGTAAGG+AGG + chr1_1:65952959-65952978 Msa0037040:intron 30.0%
CTGAAAATTTCTTTCTTGTG+TGG + chr1_1:65953274-65953293 Msa0037040:intron 30.0%
AATTTCTTTCTTGTGTGGAA+AGG + chr1_1:65953279-65953298 Msa0037040:intron 30.0%
TAGCTATGCATCAAATTCAT+TGG + chr1_1:65953358-65953377 Msa0037040:intron 30.0%
TGCACATCAAATATGTTCTT+TGG + chr1_1:65953385-65953404 Msa0037040:intron 30.0%
AAGATTCTTGAGGAAGAATT+AGG + chr1_1:65953604-65953623 Msa0037040:CDS 30.0%
!! ATTTTTCAGCTACATTTCTG+AGG + chr1_1:65953642-65953661 Msa0037040:CDS 30.0%
ATTAACACCATCAATAGTAC+GGG - chr1_1:65953824-65953843 None:intergenic 30.0%
CATTAACACCATCAATAGTA+CGG - chr1_1:65953825-65953844 None:intergenic 30.0%
TGAATTGGATTACACTTTAG+AGG + chr1_1:65954091-65954110 Msa0037040:CDS 30.0%
! ATTGTGAACCAACATTGATT+TGG + chr1_1:65954247-65954266 Msa0037040:intron 30.0%
GATACAGAGATTAAATCTGT+TGG - chr1_1:65954432-65954451 None:intergenic 30.0%
GATTTAATCTCTGTATCTAC+CGG + chr1_1:65954435-65954454 Msa0037040:CDS 30.0%
TGAATATTCAGTAGAGTTTC+CGG - chr1_1:65954457-65954476 None:intergenic 30.0%
ACTCTACTGAATATTCAGAT+AGG + chr1_1:65954460-65954479 Msa0037040:CDS 30.0%
CAAAGACAAGAATGGATAAT+TGG - chr1_1:65954538-65954557 None:intergenic 30.0%
TCTTGAAAATCTTGGATGTT+TGG + chr1_1:65954571-65954590 Msa0037040:intron 30.0%
! TTTTAGTAGAATGGGTAACT+CGG - chr1_1:65954836-65954855 None:intergenic 30.0%
!! GAGTGAAGTTTTAGTAGAAT+GGG - chr1_1:65954844-65954863 None:intergenic 30.0%
!! AGAGTGAAGTTTTAGTAGAA+TGG - chr1_1:65954845-65954864 None:intergenic 30.0%
TATTTCACATCGGAAAATTC+AGG + chr1_1:65954939-65954958 Msa0037040:intron 30.0%
! ATTGGTTCAACTTCTTGAAA+CGG + chr1_1:65954984-65955003 Msa0037040:CDS 30.0%
TATTTAGATTGGACAGAGAA+AGG - chr1_1:65955083-65955102 None:intergenic 30.0%
AAGCTACCAGTTATTTAGAT+TGG - chr1_1:65955094-65955113 None:intergenic 30.0%
AGAGTCATCTTTAACAAGAT+GGG + chr1_1:65955552-65955571 Msa0037040:intron 30.0%
!! TTATGTTTAGTTTGAGGTAG+TGG - chr1_1:65955698-65955717 None:intergenic 30.0%
!! TCGGTTTTGTAAGAGTTATT+AGG - chr1_1:65955991-65956010 None:intergenic 30.0%
!! CTGAAAAGGTGTTTATAAGT+GGG - chr1_1:65956062-65956081 None:intergenic 30.0%
!! CTGAAAAGGTGTTTATAAGT+GGG - chr1_1:65956062-65956081 None:intergenic 30.0%
ATGATGGTTTCAGTTTAGAT+TGG - chr1_1:65956288-65956307 None:intergenic 30.0%
! ATAAATTTTCCTGAAGGTTC+TGG + chr1_1:65956441-65956460 Msa0037040:intron 30.0%
! TAAATTTTCCTGAAGGTTCT+GGG + chr1_1:65956442-65956461 Msa0037040:intron 30.0%
AAGACAAGTGTATAATATGC+TGG - chr1_1:65956508-65956527 None:intergenic 30.0%
CAAATTATGAATGGAAGAAG+AGG - chr1_1:65956688-65956707 None:intergenic 30.0%
!! CTTCCATTCATAATTTGCTT+TGG + chr1_1:65956691-65956710 Msa0037040:intron 30.0%
GTTCCAAAGCAAATTATGAA+TGG - chr1_1:65956697-65956716 None:intergenic 30.0%
!!! CTTTGGAACAATTTTAGGTT+TGG + chr1_1:65956708-65956727 Msa0037040:intron 30.0%
! ATGCAATATTTTCCTTGTTG+CGG - chr1_1:65956815-65956834 None:intergenic 30.0%
AGATAAGTCAAGAAAAAGAC+AGG - chr1_1:65957390-65957409 None:intergenic 30.0%
GTTAAAGGAGCTTCAATTAA+AGG + chr1_1:65957498-65957517 Msa0037040:intron 30.0%
CTTCAATTAAAGGAGTTGAA+AGG + chr1_1:65957508-65957527 Msa0037040:intron 30.0%
TGGCTTGAATGTAGATAATT+TGG - chr1_1:65957685-65957704 None:intergenic 30.0%
!! TCCTTCTGTTTCTTTTGTTT+TGG + chr1_1:65958053-65958072 Msa0037040:intron 30.0%
ACCAAAACAAAAGAAACAGA+AGG - chr1_1:65958057-65958076 None:intergenic 30.0%
GGATTTATAGGTTTATGTGA+TGG + chr1_1:65958219-65958238 Msa0037040:intron 30.0%
TACAAAATTGCCTCAGTATT+TGG + chr1_1:65958851-65958870 Msa0037040:intron 30.0%
GAAAAAAAGTCCAAATACTG+AGG - chr1_1:65958864-65958883 None:intergenic 30.0%
AATATTCTACGCAACTTACT+AGG + chr1_1:65958908-65958927 Msa0037040:intron 30.0%
!! ACTAGGATATAGTATTTTGG+GGG + chr1_1:65958925-65958944 Msa0037040:intron 30.0%
AAGTAACTAAAACAGACCAA+AGG - chr1_1:65959249-65959268 None:intergenic 30.0%
AAAAAGATAACCAAGAGGAA+TGG - chr1_1:65959541-65959560 None:intergenic 30.0%
CAACATATACTCTCATAATC+AGG - chr1_1:65959677-65959696 None:intergenic 30.0%
CATGTACAATTATAACGAAC+TGG - chr1_1:65959761-65959780 None:intergenic 30.0%
CAGTTCGTTATAATTGTACA+TGG + chr1_1:65959759-65959778 Msa0037040:intron 30.0%
!! GGAAGCATCTATATATAGAA+GGG - chr1_1:65959973-65959992 None:intergenic 30.0%
!! TGGAAGCATCTATATATAGA+AGG - chr1_1:65959974-65959993 None:intergenic 30.0%
!! ATCGGTTATTTCTTGCATAA+TGG - chr1_1:65959994-65960013 None:intergenic 30.0%
AAAAAAGAAGATGAACGCAT+CGG - chr1_1:65960012-65960031 None:intergenic 30.0%
TTACAGATACTCAATATCCA+AGG + chr1_1:65960220-65960239 Msa0037040:CDS 30.0%
TACAGATACTCAATATCCAA+GGG + chr1_1:65960221-65960240 Msa0037040:CDS 30.0%
! ATATTGTTCTCTCTTTTGGT+AGG - chr1_1:65960572-65960591 None:intergenic 30.0%
! CACTTACATTTTGTATATGG+GGG + chr1_1:65960688-65960707 Msa0037040:three_prime_UTR 30.0%
AATGCAAAACAAATCATGGA+TGG - chr1_1:65960951-65960970 None:intergenic 30.0%
TGCAAATGCAAAACAAATCA+TGG - chr1_1:65960955-65960974 None:intergenic 30.0%
TGATTGTGAAGAGAAGTGAT+TGG - chr1_1:65949889-65949908 None:intergenic 35.0%
TTCTTCTTCTTCTTACTGGA+CGG - chr1_1:65950064-65950083 None:intergenic 35.0%
GACATGGAGTTTCTTAAAAG+AGG + chr1_1:65950124-65950143 Msa0037040:CDS 35.0%
! GATTTAACAATGGTGTTGAG+TGG + chr1_1:65950146-65950165 Msa0037040:CDS 35.0%
TCAACTTTCTTGGCAATTTG+AGG - chr1_1:65950193-65950212 None:intergenic 35.0%
!!! ATGGGTATTGGGTATTTTTG+TGG + chr1_1:65950388-65950407 Msa0037040:intron 35.0%
! TTAGTTCGTTGATTGGTTCA+TGG + chr1_1:65950554-65950573 Msa0037040:intron 35.0%
! CGTTTTTCCATTTCATGAAG+TGG + chr1_1:65950656-65950675 Msa0037040:intron 35.0%
TGAATGCAAAATAGCAAGTG+AGG - chr1_1:65950699-65950718 None:intergenic 35.0%
TAGCTTATTTGAGCTTACCT+TGG + chr1_1:65950748-65950767 Msa0037040:intron 35.0%
AAGTCTAAGTGCTTATACCA+AGG - chr1_1:65950768-65950787 None:intergenic 35.0%
AGTATTCCCAGTAAAATGCA+AGG - chr1_1:65951104-65951123 None:intergenic 35.0%
AAATGAACTTGGATTTGGAC+TGG + chr1_1:65951215-65951234 Msa0037040:intron 35.0%
AAACCATATCTCTCTGATCA+TGG - chr1_1:65951378-65951397 None:intergenic 35.0%
TTTGCTCATGTATGATCTGA+AGG + chr1_1:65951438-65951457 Msa0037040:CDS 35.0%
! ATTGGAAAAGAGCGTATTCA+TGG - chr1_1:65951652-65951671 None:intergenic 35.0%
ATAAGGGGTTAACAATTGCA+AGG + chr1_1:65952043-65952062 Msa0037040:intron 35.0%
!! TTTAGCTTGGTGGTAAATAG+GGG - chr1_1:65952193-65952212 None:intergenic 35.0%
! TTTAGAAGGGTGTGTATTGA+AGG + chr1_1:65952252-65952271 Msa0037040:intron 35.0%
!!! ATTTTTTAGAGGTGCTGAGT+TGG + chr1_1:65952395-65952414 Msa0037040:intron 35.0%
AGGATATTCCCAATTGAAGT+TGG + chr1_1:65952523-65952542 Msa0037040:intron 35.0%
CTCAATAAGGATACACTTCA+TGG - chr1_1:65952769-65952788 None:intergenic 35.0%
TCTACCAATAAATGCAGAAG+GGG + chr1_1:65952866-65952885 Msa0037040:CDS 35.0%
ATATCCCCTTCTGCATTTAT+TGG - chr1_1:65952873-65952892 None:intergenic 35.0%
AATAAATGCAGAAGGGGATA+TGG + chr1_1:65952872-65952891 Msa0037040:CDS 35.0%
CCCCACATTTATAAAAGGTA+AGG + chr1_1:65952956-65952975 Msa0037040:intron 35.0%
TGTAATGCCTATCACTTCAA+AGG + chr1_1:65953075-65953094 Msa0037040:intron 35.0%
!! CAGAAAACCTTTGAAGTGAT+AGG - chr1_1:65953085-65953104 None:intergenic 35.0%
! TCACTTCAAAGGTTTTCTGT+TGG + chr1_1:65953086-65953105 Msa0037040:intron 35.0%
! CACTTCAAAGGTTTTCTGTT+GGG + chr1_1:65953087-65953106 Msa0037040:intron 35.0%
ATCTCAACACCAATGATATC+TGG - chr1_1:65953206-65953225 None:intergenic 35.0%
! TTTCTTGTGTGGAAAGGTAT+CGG + chr1_1:65953285-65953304 Msa0037040:intron 35.0%
!!! GTATCGGCAGTTATTTTTCA+TGG + chr1_1:65953301-65953320 Msa0037040:intron 35.0%
GTAGTGAAGATGTCTGATTA+GGG + chr1_1:65953323-65953342 Msa0037040:intron 35.0%
TAGTGAAGATGTCTGATTAG+GGG + chr1_1:65953324-65953343 Msa0037040:intron 35.0%
TCCAGTTATTCGAACTTTAG+CGG - chr1_1:65953482-65953501 None:intergenic 35.0%
TGTTGCTATGAAGATTCTTG+AGG + chr1_1:65953594-65953613 Msa0037040:CDS 35.0%
TAGCTGAAAAATGATTCCAG+GGG - chr1_1:65953634-65953653 None:intergenic 35.0%
GTAGCTGAAAAATGATTCCA+GGG - chr1_1:65953635-65953654 None:intergenic 35.0%
TGTAGCTGAAAAATGATTCC+AGG - chr1_1:65953636-65953655 None:intergenic 35.0%
ATATCTACATTCTTCGCCTT+GGG + chr1_1:65953893-65953912 Msa0037040:CDS 35.0%
AAAGATCAATACAAACCCCA+AGG - chr1_1:65953912-65953931 None:intergenic 35.0%
CATGCAGGATAGAATAATAC+AGG - chr1_1:65953954-65953973 None:intergenic 35.0%
CTGTATTATTCTATCCTGCA+TGG + chr1_1:65953952-65953971 Msa0037040:intron 35.0%
CTCATTTAAGAATTCCATGC+AGG - chr1_1:65953969-65953988 None:intergenic 35.0%
CAGCAAATGCATTGAAGTTT+CGG + chr1_1:65954114-65954133 Msa0037040:CDS 35.0%
AGCAAATGCATTGAAGTTTC+GGG + chr1_1:65954115-65954134 Msa0037040:CDS 35.0%
!! GATTTGTTATTGCATCATGC+AGG + chr1_1:65954308-65954327 Msa0037040:intron 35.0%
GGCAAAAAGTAGATGCAAAA+AGG + chr1_1:65954481-65954500 Msa0037040:CDS 35.0%
ACACAATGCAAAGACAAGAA+TGG - chr1_1:65954546-65954565 None:intergenic 35.0%
! TTTGGTAATCTCCTGACAAT+TGG + chr1_1:65954589-65954608 Msa0037040:intron 35.0%
ATCTCCTGACAATTGGATTA+TGG + chr1_1:65954596-65954615 Msa0037040:intron 35.0%
CGGAAAATTCAGGTCAATAA+AGG + chr1_1:65954949-65954968 Msa0037040:intron 35.0%
!! TAAAGGTGTTGAAGCAACAT+TGG + chr1_1:65954966-65954985 Msa0037040:CDS 35.0%
TTGGTTCAACTTCTTGAAAC+GGG + chr1_1:65954985-65955004 Msa0037040:CDS 35.0%
CTCTGTCCAATCTAAATAAC+TGG + chr1_1:65955085-65955104 Msa0037040:intron 35.0%
!!! TTTTGGTTTGCTCTGTCAAA+TGG + chr1_1:65955167-65955186 Msa0037040:CDS 35.0%
TGCTCTGTCAAATGGAAAAA+AGG + chr1_1:65955175-65955194 Msa0037040:CDS 35.0%
TTCATATAGTAAACGGTGAC+TGG + chr1_1:65955226-65955245 Msa0037040:CDS 35.0%
TCATATAGTAAACGGTGACT+GGG + chr1_1:65955227-65955246 Msa0037040:CDS 35.0%
ATTATACCATGGTAACAAGC+CGG - chr1_1:65955308-65955327 None:intergenic 35.0%
GAGATGTGAGTATTATACCA+TGG - chr1_1:65955319-65955338 None:intergenic 35.0%
TGGTATAATACTCACATCTC+AGG + chr1_1:65955319-65955338 Msa0037040:intron 35.0%
! AATACTCACATCTCAGGTTT+TGG + chr1_1:65955325-65955344 Msa0037040:intron 35.0%
!! TTATTTTCAGGAACTGGAAC+AGG + chr1_1:65955473-65955492 Msa0037040:intron 35.0%
GAGAGTCATCTTTAACAAGA+TGG + chr1_1:65955551-65955570 Msa0037040:intron 35.0%
ACATTTCTATTAGGCTTTGC+TGG + chr1_1:65955730-65955749 Msa0037040:intron 35.0%
GAGTCATATCTATCTGATGT+GGG - chr1_1:65955871-65955890 None:intergenic 35.0%
AGAGTCATATCTATCTGATG+TGG - chr1_1:65955872-65955891 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr1_1:65955937-65955956 None:intergenic 35.0%
GTAAGAGTTGTATTACAGGT+CGG - chr1_1:65956010-65956029 None:intergenic 35.0%
!! CCTGAAAAGGTGTTTATAAG+TGG - chr1_1:65956063-65956082 None:intergenic 35.0%
! CCACTTATAAACACCTTTTC+AGG + chr1_1:65956060-65956079 Msa0037040:intron 35.0%
GAAATTGTTGAGTTCCACAT+TGG - chr1_1:65956097-65956116 None:intergenic 35.0%
!! CCTGAAAAGGTGTTTATAAG+TGG - chr1_1:65956063-65956082 None:intergenic 35.0%
! CCACTTATAAACACCTTTTC+AGG + chr1_1:65956060-65956079 Msa0037040:intron 35.0%
GAAATTGTTGAGTTCCACAT+TGG - chr1_1:65956097-65956116 None:intergenic 35.0%
! TCTTCGGACATTGATTATGA+TGG - chr1_1:65956230-65956249 None:intergenic 35.0%
TTCGGACATTGAACATTCTT+CGG - chr1_1:65956246-65956265 None:intergenic 35.0%
! TCTTCGGACATTGATTATGA+TGG - chr1_1:65956230-65956249 None:intergenic 35.0%
ATATATGAAACCAACCGCAT+AGG + chr1_1:65956331-65956350 Msa0037040:intron 35.0%
ATCCATAGACATATCCTATG+CGG - chr1_1:65956348-65956367 None:intergenic 35.0%
GTGTATAATATGCTGGCATA+CGG - chr1_1:65956501-65956520 None:intergenic 35.0%
TGTATATTTACCCAGAACAG+TGG + chr1_1:65956842-65956861 Msa0037040:intron 35.0%
GTATATTTACCCAGAACAGT+GGG + chr1_1:65956843-65956862 Msa0037040:intron 35.0%
! TTTTATCAACCACAGTTCTG+TGG - chr1_1:65956887-65956906 None:intergenic 35.0%
! TCTCATAGTGGAAAAAGACT+CGG - chr1_1:65956925-65956944 None:intergenic 35.0%
TGCAAGACAGTACATGTTTA+AGG - chr1_1:65957100-65957119 None:intergenic 35.0%
AAACTTTCTTTCTCCTGTTC+AGG + chr1_1:65957150-65957169 Msa0037040:intron 35.0%
GGTACTTCTAAATCGAAAGA+AGG + chr1_1:65957171-65957190 Msa0037040:intron 35.0%
TTTCCATGTTCTTGAGAGTA+GGG + chr1_1:65957212-65957231 Msa0037040:CDS 35.0%
!! AACAGGCTCTAAATATAGGT+TGG - chr1_1:65957364-65957383 None:intergenic 35.0%
! ACCTATATTTAGAGCCTGTT+TGG + chr1_1:65957364-65957383 Msa0037040:intron 35.0%
TGGATACATTAGGGAAATGA+AGG - chr1_1:65957729-65957748 None:intergenic 35.0%
! ACATGGTGTTGGATACATTA+GGG - chr1_1:65957738-65957757 None:intergenic 35.0%
! AACATGGTGTTGGATACATT+AGG - chr1_1:65957739-65957758 None:intergenic 35.0%
TTCTAGACCTTCAAAAAGCT+GGG + chr1_1:65958463-65958482 Msa0037040:intron 35.0%
CAGATGGAATTGAAAACAGT+CGG - chr1_1:65958522-65958541 None:intergenic 35.0%
! ATGCATAGTACTGAGTGTTT+GGG - chr1_1:65958642-65958661 None:intergenic 35.0%
! TGCACTTTCCTTTTGAACTT+AGG + chr1_1:65958691-65958710 Msa0037040:intron 35.0%
TGATGAGCACCAAAAATGAA+AGG - chr1_1:65958886-65958905 None:intergenic 35.0%
TTCTACCAACATTGAACCTT+TGG + chr1_1:65959230-65959249 Msa0037040:intron 35.0%
TGCAATATCAAATGTACCAG+CGG - chr1_1:65959396-65959415 None:intergenic 35.0%
! ACGATTTTACCATCCAAAGA+TGG + chr1_1:65959428-65959447 Msa0037040:CDS 35.0%
CAAAGCTAGTGATAGATACA+TGG + chr1_1:65959613-65959632 Msa0037040:intron 35.0%
AGCAAGAGTCCAAGAAAATT+TGG - chr1_1:65959703-65959722 None:intergenic 35.0%
! TGTTAAAGCACCCAAAAGAT+GGG - chr1_1:65959796-65959815 None:intergenic 35.0%
! ATGTTAAAGCACCCAAAAGA+TGG - chr1_1:65959797-65959816 None:intergenic 35.0%
! CTTTTATGCATGGAATGAAC+AGG + chr1_1:65960077-65960096 Msa0037040:intron 35.0%
AGCTTCAATAATCAGAGCAA+TGG + chr1_1:65960104-65960123 Msa0037040:CDS 35.0%
! ACTTCGGGTGATATTTTCTA+AGG + chr1_1:65960341-65960360 Msa0037040:CDS 35.0%
GTCATAAAATACTGATGCTG+CGG + chr1_1:65960382-65960401 Msa0037040:CDS 35.0%
AATCATTACAGCTTCAGCTT+TGG + chr1_1:65960428-65960447 Msa0037040:CDS 35.0%
GAGGGTAAAATATGTGGTAT+AGG + chr1_1:65960640-65960659 Msa0037040:three_prime_UTR 35.0%
GGTAAAATATGTGGTATAGG+AGG + chr1_1:65960643-65960662 Msa0037040:three_prime_UTR 35.0%
! AGGAGGATAGCATTATCTTT+TGG + chr1_1:65960660-65960679 Msa0037040:three_prime_UTR 35.0%
ATTTCTCATGTTGACCAGTG+CGG + chr1_1:65949754-65949773 Msa0037040:five_prime_UTR 40.0%
TAGTGTGAGTTGTTGATGTG+TGG - chr1_1:65949855-65949874 None:intergenic 40.0%
AGAGAAGTGATTGGTAGAAG+TGG - chr1_1:65949880-65949899 None:intergenic 40.0%
CATTCGAATTTCGGTCACTT+TGG + chr1_1:65950085-65950104 Msa0037040:CDS 40.0%
TCTTGGCAATTTGAGGAATG+CGG - chr1_1:65950186-65950205 None:intergenic 40.0%
TGGAAAACGAAGTAGCTTGA+GGG - chr1_1:65950246-65950265 None:intergenic 40.0%
GGTATTATACCTGGATACCA+AGG - chr1_1:65950286-65950305 None:intergenic 40.0%
!! GGTATTGGGTATTTTTGTGG+TGG + chr1_1:65950391-65950410 Msa0037040:intron 40.0%
! TTTGTGGTGGAACATGCTAA+TGG + chr1_1:65950404-65950423 Msa0037040:intron 40.0%
! TTGTGGTGGAACATGCTAAT+GGG + chr1_1:65950405-65950424 Msa0037040:intron 40.0%
! GGTCTGTTTAGTTCGTTGAT+TGG + chr1_1:65950547-65950566 Msa0037040:intron 40.0%
ACTAACTGTGTTCGGAGTTA+TGG + chr1_1:65950587-65950606 Msa0037040:intron 40.0%
CATGTAACTAACACACTGCA+CGG - chr1_1:65950620-65950639 None:intergenic 40.0%
CAAAATAAGCCAATCCAGAG+AGG - chr1_1:65950725-65950744 None:intergenic 40.0%
AGTAGCCTAGAATATGCAGA+AGG - chr1_1:65950963-65950982 None:intergenic 40.0%
TCTGCATATTCTAGGCTACT+TGG + chr1_1:65950963-65950982 Msa0037040:intron 40.0%
! TACTTGGTGGAGGTTAATGA+TGG + chr1_1:65950979-65950998 Msa0037040:intron 40.0%
! TGACTGTCCTTGCATTTTAC+TGG + chr1_1:65951094-65951113 Msa0037040:intron 40.0%
! GACTGTCCTTGCATTTTACT+GGG + chr1_1:65951095-65951114 Msa0037040:intron 40.0%
!!! CTTTGTCTTTTAGGACTGTC+TGG + chr1_1:65951409-65951428 Msa0037040:intron 40.0%
GTAACTAGCATATGCTTCCA+AGG - chr1_1:65951464-65951483 None:intergenic 40.0%
TCCTGAGGATCATAAGTTTC+AGG - chr1_1:65951523-65951542 None:intergenic 40.0%
GCGTATTCATGGATGGAAAT+TGG - chr1_1:65951641-65951660 None:intergenic 40.0%
! GAAAAGAGCGTATTCATGGA+TGG - chr1_1:65951648-65951667 None:intergenic 40.0%
GTGTTGTGACTCAAGCTAAA+AGG - chr1_1:65951716-65951735 None:intergenic 40.0%
TAAAACGGATCACAGGACAA+AGG - chr1_1:65951773-65951792 None:intergenic 40.0%
TGATACGTAAAACGGATCAC+AGG - chr1_1:65951780-65951799 None:intergenic 40.0%
! GATCCGTTTTACGTATCAGT+AGG + chr1_1:65951782-65951801 Msa0037040:intron 40.0%
CCTCCTACTGATACGTAAAA+CGG - chr1_1:65951788-65951807 None:intergenic 40.0%
ACGTATCAGTAGGAGGTAAT+TGG + chr1_1:65951792-65951811 Msa0037040:intron 40.0%
AGAACCAAAGTGTATCATGC+AGG + chr1_1:65951873-65951892 Msa0037040:intron 40.0%
AGATGCGGTGTCTATTTAGA+AGG + chr1_1:65952238-65952257 Msa0037040:intron 40.0%
GATGCGGTGTCTATTTAGAA+GGG + chr1_1:65952239-65952258 Msa0037040:intron 40.0%
AAACGAGTGATGTGTAGTTG+CGG + chr1_1:65952448-65952467 Msa0037040:intron 40.0%
CTTGGCCCCACATTTATAAA+AGG + chr1_1:65952951-65952970 Msa0037040:CDS 40.0%
CATTTGATTGACGATGCAGT+TGG + chr1_1:65953161-65953180 Msa0037040:intron 40.0%
GGTAGTGAAGATGTCTGATT+AGG + chr1_1:65953322-65953341 Msa0037040:intron 40.0%
! GGCTGTAACTCTTATTTGCA+TGG + chr1_1:65953406-65953425 Msa0037040:intron 40.0%
TGTACATTCGGGACACAAAA+AGG - chr1_1:65953447-65953466 None:intergenic 40.0%
TTTGATTGCGTTCTTCTTGC+AGG + chr1_1:65953528-65953547 Msa0037040:intron 40.0%
! ATCAAATCCCTCCTTTTCCT+AGG + chr1_1:65953569-65953588 Msa0037040:CDS 40.0%
ATAGCAACAGTCCTAGGAAA+AGG - chr1_1:65953583-65953602 None:intergenic 40.0%
ATCTTCATAGCAACAGTCCT+AGG - chr1_1:65953589-65953608 None:intergenic 40.0%
TACTTTGCCCGTACTATTGA+TGG + chr1_1:65953814-65953833 Msa0037040:CDS 40.0%
AAGTTCAGCGTCCTAATTTG+CGG + chr1_1:65953854-65953873 Msa0037040:CDS 40.0%
GATATCTACATTCTTCGCCT+TGG + chr1_1:65953892-65953911 Msa0037040:CDS 40.0%
TATCTACATTCTTCGCCTTG+GGG + chr1_1:65953894-65953913 Msa0037040:CDS 40.0%
ATCTTAACCATCTCCTCAGT+TGG + chr1_1:65953992-65954011 Msa0037040:intron 40.0%
TCTTAACCATCTCCTCAGTT+GGG + chr1_1:65953993-65954012 Msa0037040:intron 40.0%
GTCAGACACCAAATCAATGT+TGG - chr1_1:65954258-65954277 None:intergenic 40.0%
!! AAAAAGGCGTCTACTTGATC+TGG + chr1_1:65954497-65954516 Msa0037040:CDS 40.0%
CCTACCATAATCCAATTGTC+AGG - chr1_1:65954603-65954622 None:intergenic 40.0%
CCTGACAATTGGATTATGGT+AGG + chr1_1:65954600-65954619 Msa0037040:intron 40.0%
ATGACTCTAGATCTGGATTG+AGG + chr1_1:65954738-65954757 Msa0037040:intron 40.0%
TGATTAAGCTAATGGGAGGT+TGG - chr1_1:65954783-65954802 None:intergenic 40.0%
! AGGTTGATTAAGCTAATGGG+AGG - chr1_1:65954787-65954806 None:intergenic 40.0%
TGCACTTCATCAGGAGAAAT+AGG + chr1_1:65955045-65955064 Msa0037040:CDS 40.0%
GCACTTCATCAGGAGAAATA+GGG + chr1_1:65955046-65955065 Msa0037040:CDS 40.0%
TGTCAACGCTCTGATTGATA+TGG + chr1_1:65955257-65955276 Msa0037040:CDS 40.0%
CGCTCTGATTGATATGGATA+TGG + chr1_1:65955263-65955282 Msa0037040:CDS 40.0%
ATATGGATATGGTGAGACCA+GGG + chr1_1:65955274-65955293 Msa0037040:CDS 40.0%
!! AAATATCCGGCTTGTTACCA+TGG + chr1_1:65955299-65955318 Msa0037040:CDS 40.0%
GCGTGAACATAAGCTTAAGA+AGG - chr1_1:65955424-65955443 None:intergenic 40.0%
CAGCAATGAAAGCAAACCAA+AGG - chr1_1:65955803-65955822 None:intergenic 40.0%
!! CTTCATTGTGTTGGCTTTGA+GGG + chr1_1:65955833-65955852 Msa0037040:intron 40.0%
!! TTCATTGTGTTGGCTTTGAG+GGG + chr1_1:65955834-65955853 Msa0037040:intron 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr1_1:65955935-65955954 Msa0037040:intron 40.0%
GTTAGGCCCTAAATTTCAAC+AGG + chr1_1:65955952-65955971 Msa0037040:intron 40.0%
ACATCTCTCACTTTACAGGT+CGG - chr1_1:65956037-65956056 None:intergenic 40.0%
GTTCCACATTGGATGAGATA+GGG - chr1_1:65956086-65956105 None:intergenic 40.0%
AGTTCCACATTGGATGAGAT+AGG - chr1_1:65956087-65956106 None:intergenic 40.0%
ACATCTCTCACTTTACAGGT+CGG - chr1_1:65956037-65956056 None:intergenic 40.0%
GTTCCACATTGGATGAGATA+GGG - chr1_1:65956086-65956105 None:intergenic 40.0%
AGTTCCACATTGGATGAGAT+AGG - chr1_1:65956087-65956106 None:intergenic 40.0%
ATAGACATATCCTATGCGGT+TGG - chr1_1:65956344-65956363 None:intergenic 40.0%
AACCGCATAGGATATGTCTA+TGG + chr1_1:65956343-65956362 Msa0037040:intron 40.0%
AAATCTTTCCCAGAACCTTC+AGG - chr1_1:65956453-65956472 None:intergenic 40.0%
TTTACCTTCGAAAGAGGCTA+GGG - chr1_1:65956536-65956555 None:intergenic 40.0%
CAACAGTTTACCTTCGAAAG+AGG - chr1_1:65956542-65956561 None:intergenic 40.0%
! CTCATAGTGGAAAAAGACTC+GGG - chr1_1:65956924-65956943 None:intergenic 40.0%
!! CGATTTAGAAGTACCTGAAC+AGG - chr1_1:65957166-65957185 None:intergenic 40.0%
ATCGAAAGAAGGAGTTCCAA+TGG + chr1_1:65957182-65957201 Msa0037040:CDS 40.0%
CTTTCCATGTTCTTGAGAGT+AGG + chr1_1:65957211-65957230 Msa0037040:CDS 40.0%
TTCCATGTTCTTGAGAGTAG+GGG + chr1_1:65957213-65957232 Msa0037040:CDS 40.0%
GTATGTCAAAGTGCATGTCA+GGG + chr1_1:65957243-65957262 Msa0037040:intron 40.0%
!! GCCAAACAGGCTCTAAATAT+AGG - chr1_1:65957368-65957387 None:intergenic 40.0%
AAGAAAAAGACAGGCCAAAC+AGG - chr1_1:65957381-65957400 None:intergenic 40.0%
AAGTAGGGCCAAACAACATT+TGG + chr1_1:65957425-65957444 Msa0037040:intron 40.0%
AGTAGGGCCAAACAACATTT+GGG + chr1_1:65957426-65957445 Msa0037040:intron 40.0%
AGCTTCTCCCAAATGTTGTT+TGG - chr1_1:65957436-65957455 None:intergenic 40.0%
GCATGAAATGAACATGGTGT+TGG - chr1_1:65957749-65957768 None:intergenic 40.0%
!! TTTGGTGCCGAGTTGAAATT+TGG + chr1_1:65958071-65958090 Msa0037040:intron 40.0%
CTTCTAGACCTTCAAAAAGC+TGG + chr1_1:65958462-65958481 Msa0037040:intron 40.0%
! AAAAAGACTAAGGGTGCGTT+TGG - chr1_1:65958489-65958508 None:intergenic 40.0%
!! CGCACCCTTAGTCTTTTTAT+AGG + chr1_1:65958491-65958510 Msa0037040:intron 40.0%
! GATGCATAGTACTGAGTGTT+TGG - chr1_1:65958643-65958662 None:intergenic 40.0%
CATTACTGCATAGGAAACAC+AGG - chr1_1:65958673-65958692 None:intergenic 40.0%
! AGGAAAGTGCATTACTGCAT+AGG - chr1_1:65958682-65958701 None:intergenic 40.0%
TGCTATAATGCACTCTCCTT+TGG + chr1_1:65958734-65958753 Msa0037040:intron 40.0%
GCTATAATGCACTCTCCTTT+GGG + chr1_1:65958735-65958754 Msa0037040:intron 40.0%
GACAACATGCTTTAACCCAA+AGG - chr1_1:65958753-65958772 None:intergenic 40.0%
TGGGTTAAAGCATGTTGTCA+AGG + chr1_1:65958754-65958773 Msa0037040:intron 40.0%
TGTTGTCAAGGAGCTTAGTT+AGG + chr1_1:65958766-65958785 Msa0037040:intron 40.0%
TGCTTTCTGTGTTACAACAG+TGG - chr1_1:65958822-65958841 None:intergenic 40.0%
TGGGGGATATTAAGTTTAGC+AGG + chr1_1:65958942-65958961 Msa0037040:intron 40.0%
TAGCAGGTGTTCACTCAATT+AGG + chr1_1:65958958-65958977 Msa0037040:intron 40.0%
ACAGACCAAAGGTTCAATGT+TGG - chr1_1:65959238-65959257 None:intergenic 40.0%
CATACTTCTGATACCTTGTC+AGG + chr1_1:65959309-65959328 Msa0037040:intron 40.0%
TTCTGATACCTTGTCAGGAA+AGG + chr1_1:65959314-65959333 Msa0037040:intron 40.0%
! CTTATTTGGTGATTGATCGG+GGG - chr1_1:65959372-65959391 None:intergenic 40.0%
! CCTTATTTGGTGATTGATCG+GGG - chr1_1:65959373-65959392 None:intergenic 40.0%
!! GCCTTATTTGGTGATTGATC+GGG - chr1_1:65959374-65959393 None:intergenic 40.0%
!! GGCCTTATTTGGTGATTGAT+CGG - chr1_1:65959375-65959394 None:intergenic 40.0%
! AAGCAAGATAGAGAGCATGT+AGG - chr1_1:65959492-65959511 None:intergenic 40.0%
! GATTTTGTCACCATTCCTCT+TGG + chr1_1:65959528-65959547 Msa0037040:intron 40.0%
! GTTAAAGCACCCAAAAGATG+GGG - chr1_1:65959795-65959814 None:intergenic 40.0%
CGTTCATCTTCGTAAACACT+TGG + chr1_1:65960043-65960062 Msa0037040:intron 40.0%
TATGCATGGAATGAACAGGA+CGG + chr1_1:65960081-65960100 Msa0037040:intron 40.0%
CTATGACCTTGCAAAGTTGT+TGG - chr1_1:65960155-65960174 None:intergenic 40.0%
CATCCATTGACACAATGCAT+CGG - chr1_1:65960178-65960197 None:intergenic 40.0%
TCAATATCCAAGGGTGATGT+TGG + chr1_1:65960230-65960249 Msa0037040:CDS 40.0%
GGAACTAGCAACAAAGAATC+TGG + chr1_1:65960258-65960277 Msa0037040:CDS 40.0%
AAGTCGCCGATCTCTAAATA+AGG - chr1_1:65960325-65960344 None:intergenic 40.0%
TATTTAGAGATCGGCGACTT+CGG + chr1_1:65960325-65960344 Msa0037040:CDS 40.0%
GCTTAGGTGCATCGAATATT+GGG - chr1_1:65960497-65960516 None:intergenic 40.0%
ACTGCATATCTCTTACGCTT+AGG - chr1_1:65960513-65960532 None:intergenic 40.0%
! CTTTGAAGGCAATTAGTGTG+AGG + chr1_1:65960618-65960637 Msa0037040:three_prime_UTR 40.0%
TGTGAGGAGGGTAAAATATG+TGG + chr1_1:65960634-65960653 Msa0037040:three_prime_UTR 40.0%
TATTGTTGCAGTTCAGATCC+AGG + chr1_1:65960735-65960754 Msa0037040:three_prime_UTR 40.0%
! ATACATACTTGTAGGGTACC+TGG - chr1_1:65960756-65960775 None:intergenic 40.0%
TTGAATCGGTCCTATGTAGA+TGG + chr1_1:65960858-65960877 Msa0037040:three_prime_UTR 40.0%
CCAAATCAGTCCATCTACAT+AGG - chr1_1:65960871-65960890 None:intergenic 40.0%
!! CCTATGTAGATGGACTGATT+TGG + chr1_1:65960868-65960887 Msa0037040:three_prime_UTR 40.0%
!! CATTTTAGACGAGCTTTGTC+CGG + chr1_1:65961026-65961045 Msa0037040:three_prime_UTR 40.0%
GTGGAATACATTTACCGCAC+TGG - chr1_1:65949771-65949790 None:intergenic 45.0%
GTTGTTGATGTGTGGTTGTG+TGG - chr1_1:65949847-65949866 None:intergenic 45.0%
!! GGTGTTGTTGCATGTGAAAG+TGG - chr1_1:65949918-65949937 None:intergenic 45.0%
! TTTCGGTCACTTTGGTCAAG+TGG + chr1_1:65950093-65950112 Msa0037040:CDS 45.0%
AGGAATGCGGAATGCATCAT+TGG - chr1_1:65950173-65950192 None:intergenic 45.0%
GTGGAAAACGAAGTAGCTTG+AGG - chr1_1:65950247-65950266 None:intergenic 45.0%
! CTTCGTTTTCCACTCCTTCT+TGG + chr1_1:65950254-65950273 Msa0037040:CDS 45.0%
TTGTGGGGTGTGCTTATACA+TGG + chr1_1:65950330-65950349 Msa0037040:intron 45.0%
! GCTAATGGGTAGTGTGTGAT+TGG + chr1_1:65950419-65950438 Msa0037040:intron 45.0%
CGTGCAGTGTGTTAGTTACA+TGG + chr1_1:65950618-65950637 Msa0037040:intron 45.0%
! TTTTGCATTCACGACCTCTC+TGG + chr1_1:65950708-65950727 Msa0037040:intron 45.0%
AATATGCAGAAGGCCCTGTT+TGG - chr1_1:65950953-65950972 None:intergenic 45.0%
GCATATTCTAGGCTACTTGG+TGG + chr1_1:65950966-65950985 Msa0037040:intron 45.0%
! TATTCTAGGCTACTTGGTGG+AGG + chr1_1:65950969-65950988 Msa0037040:intron 45.0%
! ACTTGGATTTGGACTGGAAG+AGG + chr1_1:65951221-65951240 Msa0037040:intron 45.0%
GCACCATGATCAGAGAGATA+TGG + chr1_1:65951372-65951391 Msa0037040:intron 45.0%
!!! TCTTTTAGGACTGTCTGGAG+TGG + chr1_1:65951414-65951433 Msa0037040:intron 45.0%
CATGTATGATCTGAAGGCCT+TGG + chr1_1:65951444-65951463 Msa0037040:CDS 45.0%
GGATCATAAGTTTCAGGCAG+TGG - chr1_1:65951517-65951536 None:intergenic 45.0%
GCCTGAAACTTATGATCCTC+AGG + chr1_1:65951519-65951538 Msa0037040:CDS 45.0%
AAATAGTGAGCGACATCCTG+AGG - chr1_1:65951538-65951557 None:intergenic 45.0%
ATACGAAGAGCCACAACATG+GGG - chr1_1:65951571-65951590 None:intergenic 45.0%
CATACGAAGAGCCACAACAT+GGG - chr1_1:65951572-65951591 None:intergenic 45.0%
! CCGTTTTACGTATCAGTAGG+AGG + chr1_1:65951785-65951804 Msa0037040:intron 45.0%
ATAGGGACAAAGGTTTAGGC+AGG + chr1_1:65951845-65951864 Msa0037040:intron 45.0%
! ATCTTTTTACGCCACAGTGG+GGG - chr1_1:65952222-65952241 None:intergenic 45.0%
! CATCTTTTTACGCCACAGTG+GGG - chr1_1:65952223-65952242 None:intergenic 45.0%
! GCATCTTTTTACGCCACAGT+GGG - chr1_1:65952224-65952243 None:intergenic 45.0%
CACTGTGGCGTAAAAAGATG+CGG + chr1_1:65952223-65952242 Msa0037040:intron 45.0%
CCACAAAAAGCAGAGAGAGA+GGG - chr1_1:65952289-65952308 None:intergenic 45.0%
!!! CCTCTCTCTCTGCTTTTTGT+GGG + chr1_1:65952287-65952306 Msa0037040:intron 45.0%
!!! TTTTAGAGGTGCTGAGTTGG+AGG + chr1_1:65952398-65952417 Msa0037040:intron 45.0%
AACGAGTGATGTGTAGTTGC+GGG + chr1_1:65952449-65952468 Msa0037040:intron 45.0%
! AGAGCATCCACAATGTCGAT+GGG - chr1_1:65952503-65952522 None:intergenic 45.0%
! TAGAGCATCCACAATGTCGA+TGG - chr1_1:65952504-65952523 None:intergenic 45.0%
ATCGACATTGTGGATGCTCT+AGG + chr1_1:65952503-65952522 Msa0037040:intron 45.0%
!! CATTGGTGTTGAGATGTCCA+AGG + chr1_1:65953211-65953230 Msa0037040:CDS 45.0%
GCCGCTAAAGTTCGAATAAC+TGG + chr1_1:65953478-65953497 Msa0037040:intron 45.0%
CAACAGTCCTAGGAAAAGGA+GGG - chr1_1:65953579-65953598 None:intergenic 45.0%
TACCTGACCAAATGATGCAG+CGG - chr1_1:65953677-65953696 None:intergenic 45.0%
CTTAACCATCTCCTCAGTTG+GGG + chr1_1:65953994-65954013 Msa0037040:intron 45.0%
GCCTTTATGCTGATGAGCTT+GGG + chr1_1:65954054-65954073 Msa0037040:CDS 45.0%
!!! GCGAGGTTTTGTTGGTGAAT+TGG + chr1_1:65954076-65954095 Msa0037040:CDS 45.0%
! TCGAAAGAGAGTTCTGACCA+TGG + chr1_1:65954386-65954405 Msa0037040:CDS 45.0%
ACTCTAGATCTGGATTGAGG+TGG + chr1_1:65954741-65954760 Msa0037040:intron 45.0%
CAAGTTACCAGGATGTGGAT+CGG - chr1_1:65955022-65955041 None:intergenic 45.0%
! AAGGCATCAATTCGCTATGC+TGG + chr1_1:65955194-65955213 Msa0037040:CDS 45.0%
GATATGGATATGGTGAGACC+AGG + chr1_1:65955273-65955292 Msa0037040:CDS 45.0%
TGAGACCAGGGACAAATATC+CGG + chr1_1:65955286-65955305 Msa0037040:CDS 45.0%
CTTAAATTCCACTTCCCCCA+AGG - chr1_1:65955499-65955518 None:intergenic 45.0%
CTTGGGGGAAGTGGAATTTA+AGG + chr1_1:65955497-65955516 Msa0037040:CDS 45.0%
GGGGAAGTGGAATTTAAGGA+TGG + chr1_1:65955501-65955520 Msa0037040:CDS 45.0%
TTCCTGATGTGAAGTTCAGC+AGG + chr1_1:65955526-65955545 Msa0037040:CDS 45.0%
TCCTGATGTGAAGTTCAGCA+GGG + chr1_1:65955527-65955546 Msa0037040:CDS 45.0%
TGGAAATTCCGCCTTCATTG+CGG + chr1_1:65955750-65955769 Msa0037040:intron 45.0%
CAAACCAAAGGCCGCAATTT+AGG - chr1_1:65955791-65955810 None:intergenic 45.0%
!! CAACACAATGAAGGTGTTGG+AGG - chr1_1:65955826-65955845 None:intergenic 45.0%
CTCCAACACCTTCATTGTGT+TGG + chr1_1:65955824-65955843 Msa0037040:intron 45.0%
! AGCCAACACAATGAAGGTGT+TGG - chr1_1:65955829-65955848 None:intergenic 45.0%
CCTCAAAGCCAACACAATGA+AGG - chr1_1:65955835-65955854 None:intergenic 45.0%
!! CCTTCATTGTGTTGGCTTTG+AGG + chr1_1:65955832-65955851 Msa0037040:intron 45.0%
!! TCATTGTGTTGGCTTTGAGG+GGG + chr1_1:65955835-65955854 Msa0037040:intron 45.0%
CCTTACAAAACCGGCATGTA+AGG - chr1_1:65955928-65955947 None:intergenic 45.0%
!!! CCTTACATGCCGGTTTTGTA+AGG + chr1_1:65955925-65955944 Msa0037040:intron 45.0%
GGAGACATCTCTCACTTTAC+AGG - chr1_1:65956041-65956060 None:intergenic 45.0%
GGAGACATCTCTCACTTTAC+AGG - chr1_1:65956041-65956060 None:intergenic 45.0%
GTTTACCTTCGAAAGAGGCT+AGG - chr1_1:65956537-65956556 None:intergenic 45.0%
AGAAGTTTCCGAACGACGTA+GGG - chr1_1:65956778-65956797 None:intergenic 45.0%
TAGAAGTTTCCGAACGACGT+AGG - chr1_1:65956779-65956798 None:intergenic 45.0%
GTCACAAATCCCACTGTTCT+GGG - chr1_1:65956855-65956874 None:intergenic 45.0%
TATCAACCACAGTTCTGTGG+TGG - chr1_1:65956884-65956903 None:intergenic 45.0%
AAAGACTCGGGATCTAGTCA+TGG - chr1_1:65956912-65956931 None:intergenic 45.0%
AGAAGGAGTTCCAATGGCAA+AGG + chr1_1:65957188-65957207 Msa0037040:CDS 45.0%
ACATGGAAAGCCTTTGCCAT+TGG - chr1_1:65957201-65957220 None:intergenic 45.0%
GGTATGTCAAAGTGCATGTC+AGG + chr1_1:65957242-65957261 Msa0037040:intron 45.0%
TCTTTAGCAGGGTTCGAAGA+TGG - chr1_1:65957565-65957584 None:intergenic 45.0%
AGCTTGAGGTAAGAGCTTGA+GGG - chr1_1:65957784-65957803 None:intergenic 45.0%
AAGCTTGAGGTAAGAGCTTG+AGG - chr1_1:65957785-65957804 None:intergenic 45.0%
CAAGGAGCTTAGTTAGGTGT+AGG + chr1_1:65958772-65958791 Msa0037040:intron 45.0%
ATCGAGAGAGGCTTGGATAT+AGG + chr1_1:65958795-65958814 Msa0037040:intron 45.0%
TCGAGAGAGGCTTGGATATA+GGG + chr1_1:65958796-65958815 Msa0037040:intron 45.0%
CCCCGATCAATCACCAAATA+AGG + chr1_1:65959370-65959389 Msa0037040:CDS 45.0%
!! AATGTACCAGCGGCCTTATT+TGG - chr1_1:65959386-65959405 None:intergenic 45.0%
AAAGCGACACCATCTTTGGA+TGG - chr1_1:65959440-65959459 None:intergenic 45.0%
TCTCAAAGCGACACCATCTT+TGG - chr1_1:65959444-65959463 None:intergenic 45.0%
!! AAGATGGTGTCGCTTTGAGA+AGG + chr1_1:65959444-65959463 Msa0037040:CDS 45.0%
! CGACAATTGCCCCATCTTTT+GGG + chr1_1:65959783-65959802 Msa0037040:intron 45.0%
AATCAGAGCAATGGTCTCGA+AGG + chr1_1:65960113-65960132 Msa0037040:CDS 45.0%
TGACCTTGCAAAGTTGTTGG+CGG - chr1_1:65960152-65960171 None:intergenic 45.0%
TAGCCGATGCATTGTGTCAA+TGG + chr1_1:65960172-65960191 Msa0037040:CDS 45.0%
ATTTAGAGATCGGCGACTTC+GGG + chr1_1:65960326-65960345 Msa0037040:CDS 45.0%
CGCTTAGGTGCATCGAATAT+TGG - chr1_1:65960498-65960517 None:intergenic 45.0%
TGAAGGCAATTAGTGTGAGG+AGG + chr1_1:65960621-65960640 Msa0037040:three_prime_UTR 45.0%
GAAGGCAATTAGTGTGAGGA+GGG + chr1_1:65960622-65960641 Msa0037040:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTAAACTTT+TGG + chr1_1:65951191-65951210 Msa0037040:intron 5.0%
!! AATAAATAAATAATAGTAAT+GGG - chr1_1:65953037-65953056 None:intergenic 5.0%
!! AAATAAATAAATAATAGTAA+TGG - chr1_1:65953038-65953057 None:intergenic 5.0%
!! ACAATATAATTAAATATTAT+TGG + chr1_1:65953710-65953729 Msa0037040:intron 5.0%
!! TGATAAAAAATTTAAAAATA+TGG - chr1_1:65957320-65957339 None:intergenic 5.0%
!! TTAATTAAATAATAAACAAT+TGG - chr1_1:65958618-65958637 None:intergenic 5.0%
CGGAGAGTGAAGAAGATTGG+AGG - chr1_1:65949984-65950003 None:intergenic 50.0%
CTTTGGTCAAGTGGTTCGCA+AGG + chr1_1:65950102-65950121 Msa0037040:CDS 50.0%
TCAAGTGGTTCGCAAGGACA+TGG + chr1_1:65950108-65950127 Msa0037040:CDS 50.0%
ATACCTGGATACCAAGGCTC+AGG - chr1_1:65950280-65950299 None:intergenic 50.0%
CATTCACGACCTCTCTGGAT+TGG + chr1_1:65950713-65950732 Msa0037040:intron 50.0%
CAGGGCCTTCTGCATATTCT+AGG + chr1_1:65950955-65950974 Msa0037040:intron 50.0%
TGCAAGGACAGTCAGCAGAA+CGG - chr1_1:65951088-65951107 None:intergenic 50.0%
GCATACGAAGAGCCACAACA+TGG - chr1_1:65951573-65951592 None:intergenic 50.0%
CTTCGTATGCTCGAGGTAGT+TGG + chr1_1:65951583-65951602 Msa0037040:intron 50.0%
CCTGCCTGCATGATACACTT+TGG - chr1_1:65951880-65951899 None:intergenic 50.0%
CCAAAGTGTATCATGCAGGC+AGG + chr1_1:65951877-65951896 Msa0037040:intron 50.0%
TGCCCCACAACATCCACAAT+AGG + chr1_1:65952159-65952178 Msa0037040:intron 50.0%
GCCCCACAACATCCACAATA+GGG + chr1_1:65952160-65952179 Msa0037040:intron 50.0%
CCCCTATTGTGGATGTTGTG+GGG - chr1_1:65952164-65952183 None:intergenic 50.0%
CCCCACAACATCCACAATAG+GGG + chr1_1:65952161-65952180 Msa0037040:intron 50.0%
CCCCCTATTGTGGATGTTGT+GGG - chr1_1:65952165-65952184 None:intergenic 50.0%
CCCACAACATCCACAATAGG+GGG + chr1_1:65952162-65952181 Msa0037040:intron 50.0%
ACCCCCTATTGTGGATGTTG+TGG - chr1_1:65952166-65952185 None:intergenic 50.0%
! CGCATCTTTTTACGCCACAG+TGG - chr1_1:65952225-65952244 None:intergenic 50.0%
CAGAGAGAGAGGGAGAGAAA+TGG - chr1_1:65952279-65952298 None:intergenic 50.0%
!!! CCCTCTCTCTCTGCTTTTTG+TGG + chr1_1:65952286-65952305 Msa0037040:intron 50.0%
CCCACAAAAAGCAGAGAGAG+AGG - chr1_1:65952290-65952309 None:intergenic 50.0%
! GGTGCTGAGTTGGAGGAATT+AGG + chr1_1:65952405-65952424 Msa0037040:intron 50.0%
ACCCACTTAGGCACCCAAAA+GGG + chr1_1:65952472-65952491 Msa0037040:intron 50.0%
!! TCCCTTTTGGGTGCCTAAGT+GGG - chr1_1:65952476-65952495 None:intergenic 50.0%
GAGCATCCACAATGTCGATG+GGG - chr1_1:65952502-65952521 None:intergenic 50.0%
CGGTCAGTATTCGGACTTCA+GGG + chr1_1:65952832-65952851 Msa0037040:CDS 50.0%
! TTGGTCAGTCACTTTCCACG+AGG + chr1_1:65953180-65953199 Msa0037040:CDS 50.0%
TCCACGAGGCCAGATATCAT+TGG + chr1_1:65953194-65953213 Msa0037040:CDS 50.0%
ACCAATGATATCTGGCCTCG+TGG - chr1_1:65953198-65953217 None:intergenic 50.0%
GCAACAGTCCTAGGAAAAGG+AGG - chr1_1:65953580-65953599 None:intergenic 50.0%
GCTCATCAGCATAAAGGCGA+GGG - chr1_1:65954052-65954071 None:intergenic 50.0%
AGCTCATCAGCATAAAGGCG+AGG - chr1_1:65954053-65954072 None:intergenic 50.0%
CGCCTTTATGCTGATGAGCT+TGG + chr1_1:65954053-65954072 Msa0037040:CDS 50.0%
GCCCAAGCTCATCAGCATAA+AGG - chr1_1:65954058-65954077 None:intergenic 50.0%
! AGAGAGTTCTGACCATGGAG+TGG + chr1_1:65954391-65954410 Msa0037040:CDS 50.0%
! AGTTCTGACCATGGAGTGGA+TGG + chr1_1:65954395-65954414 Msa0037040:CDS 50.0%
CTAGATCTGGATTGAGGTGG+TGG + chr1_1:65954744-65954763 Msa0037040:intron 50.0%
AACTTGCGCTGCACTTCATC+AGG + chr1_1:65955036-65955055 Msa0037040:CDS 50.0%
ACAAGCCGGATATTTGTCCC+TGG - chr1_1:65955294-65955313 None:intergenic 50.0%
ACCCTGCTGAACTTCACATC+AGG - chr1_1:65955531-65955550 None:intergenic 50.0%
CAAAACCGGCATGTAAGGTG+AGG - chr1_1:65955923-65955942 None:intergenic 50.0%
GGATGAGATAGGGCCTGAAA+AGG - chr1_1:65956076-65956095 None:intergenic 50.0%
AGGCCCTATCTCATCCAATG+TGG + chr1_1:65956080-65956099 Msa0037040:intron 50.0%
GGATGAGATAGGGCCTGAAA+AGG - chr1_1:65956076-65956095 None:intergenic 50.0%
AGGCCCTATCTCATCCAATG+TGG + chr1_1:65956080-65956099 Msa0037040:intron 50.0%
GAAGTTTCCGAACGACGTAG+GGG - chr1_1:65956777-65956796 None:intergenic 50.0%
CAGAAAACTCAGCCGCAACA+AGG + chr1_1:65956800-65956819 Msa0037040:CDS 50.0%
GGTCACAAATCCCACTGTTC+TGG - chr1_1:65956856-65956875 None:intergenic 50.0%
!! CACAGTTCTGTGGTGGACTA+TGG - chr1_1:65956877-65956896 None:intergenic 50.0%
CATAGTCCACCACAGAACTG+TGG + chr1_1:65956875-65956894 Msa0037040:intron 50.0%
TGCCCCTACTCTCAAGAACA+TGG - chr1_1:65957218-65957237 None:intergenic 50.0%
TCTTGAGAGTAGGGGCAACT+AGG + chr1_1:65957221-65957240 Msa0037040:CDS 50.0%
! CGTTTGGCCCAGCTTTTTGA+AGG - chr1_1:65958473-65958492 None:intergenic 50.0%
GTTAGGTGTAGGATCGAGAG+AGG + chr1_1:65958783-65958802 Msa0037040:intron 50.0%
GTTGCAAGCCTTTCCTGACA+AGG - chr1_1:65959325-65959344 None:intergenic 50.0%
CAATCACCAAATAAGGCCGC+TGG + chr1_1:65959377-65959396 Msa0037040:CDS 50.0%
! GCGACAATTGCCCCATCTTT+TGG + chr1_1:65959782-65959801 Msa0037040:intron 50.0%
AGAGCAATGGTCTCGAAGGA+GGG + chr1_1:65960117-65960136 Msa0037040:CDS 50.0%
AATGGTCTCGAAGGAGGGAA+AGG + chr1_1:65960122-65960141 Msa0037040:CDS 50.0%
CATCCGCCAACAACTTTGCA+AGG + chr1_1:65960146-65960165 Msa0037040:CDS 50.0%
CCATTAGCCAACATCACCCT+TGG - chr1_1:65960240-65960259 None:intergenic 50.0%
! CCAAGGGTGATGTTGGCTAA+TGG + chr1_1:65960237-65960256 Msa0037040:CDS 50.0%
TACTGATGCTGCGGTTCTGT+TGG + chr1_1:65960391-65960410 Msa0037040:CDS 50.0%
! CTTCAGCTTTGGCAAGCCAT+CGG + chr1_1:65960439-65960458 Msa0037040:CDS 50.0%
! TTCAGCTTTGGCAAGCCATC+GGG + chr1_1:65960440-65960459 Msa0037040:CDS 50.0%
GGGCGGAGAGTGAAGAAGAT+TGG - chr1_1:65949987-65950006 None:intergenic 55.0%
TCTTCTTCACTCTCCGCCCA+TGG + chr1_1:65949988-65950007 Msa0037040:exon 55.0%
CTCCGTCACTCCCCTTTGTA+CGG + chr1_1:65950026-65950045 Msa0037040:CDS 55.0%
TCCGTCACTCCCCTTTGTAC+GGG + chr1_1:65950027-65950046 Msa0037040:CDS 55.0%
TCGTTGTGGCCCGTACAAAG+GGG - chr1_1:65950039-65950058 None:intergenic 55.0%
GTCGTTGTGGCCCGTACAAA+GGG - chr1_1:65950040-65950059 None:intergenic 55.0%
TACCAAGGCTCAGGCCAAGA+AGG - chr1_1:65950271-65950290 None:intergenic 55.0%
AAGAGCCACAACATGGGGTC+TGG - chr1_1:65951566-65951585 None:intergenic 55.0%
TGTGGCTCTTCGTATGCTCG+AGG + chr1_1:65951576-65951595 Msa0037040:CDS 55.0%
AGGGGAAGAACCCCCTATTG+TGG - chr1_1:65952175-65952194 None:intergenic 55.0%
!! GGGGAGCCTATTTAGCTTGG+TGG - chr1_1:65952203-65952222 None:intergenic 55.0%
GTGGGGGAGCCTATTTAGCT+TGG - chr1_1:65952206-65952225 None:intergenic 55.0%
CTAAATAGGCTCCCCCACTG+TGG + chr1_1:65952208-65952227 Msa0037040:intron 55.0%
TGTGGGCCCCACTTAGTGAT+TGG + chr1_1:65952304-65952323 Msa0037040:intron 55.0%
TGTAGTTGCGGGACCCACTT+AGG + chr1_1:65952460-65952479 Msa0037040:intron 55.0%
GACCCACTTAGGCACCCAAA+AGG + chr1_1:65952471-65952490 Msa0037040:intron 55.0%
!! CTCCCTTTTGGGTGCCTAAG+TGG - chr1_1:65952477-65952496 None:intergenic 55.0%
! TCGATGGGGCTCTCCCTTTT+GGG - chr1_1:65952488-65952507 None:intergenic 55.0%
TTCCTCCTTTGCCTCTGCTG+CGG + chr1_1:65952812-65952831 Msa0037040:CDS 55.0%
CCTCTGCTGCGGTCAGTATT+CGG + chr1_1:65952823-65952842 Msa0037040:CDS 55.0%
GCGGTCAGTATTCGGACTTC+AGG + chr1_1:65952831-65952850 Msa0037040:CDS 55.0%
GGAAGAATTAGGAGCTCCCC+TGG + chr1_1:65953615-65953634 Msa0037040:CDS 55.0%
CCAAATGATGCAGCGGCTAC+AGG - chr1_1:65953670-65953689 None:intergenic 55.0%
CCTGTAGCCGCTGCATCATT+TGG + chr1_1:65953667-65953686 Msa0037040:CDS 55.0%
AGCCGCTGCATCATTTGGTC+AGG + chr1_1:65953672-65953691 Msa0037040:CDS 55.0%
! TCCTAATTTGCGGCACGTGG+TGG + chr1_1:65953864-65953883 Msa0037040:CDS 55.0%
ACCACCACGTGCCGCAAATT+AGG - chr1_1:65953868-65953887 None:intergenic 55.0%
! TTTTGCAGCAGCCCCAACTG+AGG - chr1_1:65954008-65954027 None:intergenic 55.0%
GCGAGGGTCACTCTTTCTCT+TGG - chr1_1:65954036-65954055 None:intergenic 55.0%
TATGCTGATGAGCTTGGGCG+AGG + chr1_1:65954059-65954078 Msa0037040:CDS 55.0%
!! GAGCTTGGGCGAGGTTTTGT+TGG + chr1_1:65954068-65954087 Msa0037040:CDS 55.0%
CTGACCATGGAGTGGATGGT+CGG + chr1_1:65954399-65954418 Msa0037040:CDS 55.0%
TTCACCGACCATCCACTCCA+TGG - chr1_1:65954406-65954425 None:intergenic 55.0%
ATACACGCCGATCCACATCC+TGG + chr1_1:65955012-65955031 Msa0037040:CDS 55.0%
CAGCGCAAGTTACCAGGATG+TGG - chr1_1:65955027-65955046 None:intergenic 55.0%
GAAGTGCAGCGCAAGTTACC+AGG - chr1_1:65955033-65955052 None:intergenic 55.0%
TCAGGAACTGGAACAGGCCT+TGG + chr1_1:65955479-65955498 Msa0037040:intron 55.0%
CAGGAACTGGAACAGGCCTT+GGG + chr1_1:65955480-65955499 Msa0037040:intron 55.0%
AGGAACTGGAACAGGCCTTG+GGG + chr1_1:65955481-65955500 Msa0037040:intron 55.0%
CAATTTAGGCGACTAGGGGC+GGG - chr1_1:65955777-65955796 None:intergenic 55.0%
GCAATTTAGGCGACTAGGGG+CGG - chr1_1:65955778-65955797 None:intergenic 55.0%
GCCCCTAGTCGCCTAAATTG+CGG + chr1_1:65955777-65955796 Msa0037040:intron 55.0%
GCCGCAATTTAGGCGACTAG+GGG - chr1_1:65955781-65955800 None:intergenic 55.0%
GGCCGCAATTTAGGCGACTA+GGG - chr1_1:65955782-65955801 None:intergenic 55.0%
AGGCCGCAATTTAGGCGACT+AGG - chr1_1:65955783-65955802 None:intergenic 55.0%
GTCGCCTAAATTGCGGCCTT+TGG + chr1_1:65955784-65955803 Msa0037040:intron 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG + chr1_1:65955838-65955857 Msa0037040:intron 55.0%
GCACTCCTCACCTTACATGC+CGG + chr1_1:65955915-65955934 Msa0037040:intron 55.0%
CGATCCCTAGCCTCTTTCGA+AGG + chr1_1:65956529-65956548 Msa0037040:CDS 55.0%
TTTCCGAACGACGTAGGGGT+AGG - chr1_1:65956773-65956792 None:intergenic 55.0%
CGTAGTCTGCACTCTGCAGA+TGG - chr1_1:65958538-65958557 None:intergenic 55.0%
GTGTAGGATCGAGAGAGGCT+TGG + chr1_1:65958788-65958807 Msa0037040:intron 55.0%
CAGAGCAATGGTCTCGAAGG+AGG + chr1_1:65960116-65960135 Msa0037040:CDS 55.0%
ACAGCGACAGAACAACCCGA+TGG - chr1_1:65960458-65960477 None:intergenic 55.0%
GGTTGTTCTGTCGCTGTCTG+AGG + chr1_1:65960461-65960480 Msa0037040:CDS 55.0%
! TCGCTGTCTGAGGCTTACCT+GGG + chr1_1:65960471-65960490 Msa0037040:CDS 55.0%
GTGCATCGAATATTGGGCCC+AGG - chr1_1:65960491-65960510 None:intergenic 55.0%
CGTACAAAGGGGAGTGACGG+AGG - chr1_1:65950028-65950047 None:intergenic 60.0%
GCCCGTACAAAGGGGAGTGA+CGG - chr1_1:65950031-65950050 None:intergenic 60.0%
CGTCGTTGTGGCCCGTACAA+AGG - chr1_1:65950041-65950060 None:intergenic 60.0%
CTTACTGGACGGCGTCGTTG+TGG - chr1_1:65950053-65950072 None:intergenic 60.0%
AGGCTCAGGCCAAGAAGGAG+TGG - chr1_1:65950266-65950285 None:intergenic 60.0%
CTCCTTCTTGGCCTGAGCCT+TGG + chr1_1:65950266-65950285 Msa0037040:CDS 60.0%
TGGCCTGAGCCTTGGTATCC+AGG + chr1_1:65950274-65950293 Msa0037040:CDS 60.0%
CAGTGCCAGACCCCATGTTG+TGG + chr1_1:65951558-65951577 Msa0037040:CDS 60.0%
! GTCGATGGGGCTCTCCCTTT+TGG - chr1_1:65952489-65952508 None:intergenic 60.0%
GGAGAGCCCCATCGACATTG+TGG + chr1_1:65952493-65952512 Msa0037040:intron 60.0%
ACTGACCGCAGCAGAGGCAA+AGG - chr1_1:65952820-65952839 None:intergenic 60.0%
CCGAATACTGACCGCAGCAG+AGG - chr1_1:65952826-65952845 None:intergenic 60.0%
! GCGTCCTAATTTGCGGCACG+TGG + chr1_1:65953861-65953880 Msa0037040:CDS 60.0%
! ATTTGCGGCACGTGGTGGTG+CGG + chr1_1:65953869-65953888 Msa0037040:CDS 60.0%
AGCAGCCCCAACTGAGGAGA+TGG - chr1_1:65954002-65954021 None:intergenic 60.0%
GGAACTGGAACAGGCCTTGG+GGG + chr1_1:65955482-65955501 Msa0037040:intron 60.0%
CTGCCTACCCCTACGTCGTT+CGG + chr1_1:65956767-65956786 Msa0037040:CDS 60.0%
! GTCGCTGTCTGAGGCTTACC+TGG + chr1_1:65960470-65960489 Msa0037040:CDS 60.0%
TCACTCTCCGCCCATGGCGA+CGG + chr1_1:65949994-65950013 Msa0037040:exon 65.0%
! GGTGCTGTCACCGTCGCCAT+GGG - chr1_1:65950007-65950026 None:intergenic 65.0%
! AGGTGCTGTCACCGTCGCCA+TGG - chr1_1:65950008-65950027 None:intergenic 65.0%
GACCGCAGCAGAGGCAAAGG+AGG - chr1_1:65952817-65952836 None:intergenic 65.0%
! TTTGCGGCACGTGGTGGTGC+GGG + chr1_1:65953870-65953889 Msa0037040:CDS 65.0%
GGAACAGGCCTTGGGGGAAG+TGG + chr1_1:65955488-65955507 Msa0037040:CDS 65.0%
TAGGGGCGGGACCGCAATGA+AGG - chr1_1:65955764-65955783 None:intergenic 65.0%
GCTGTCACCGTCGCCATGGG+CGG - chr1_1:65950004-65950023 None:intergenic 70.0%
GGGCGGGACCGCAATGAAGG+CGG - chr1_1:65955761-65955780 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65949733 65961054 65949733 ID=Msa0037040;Name=Msa0037040
chr1_1 mRNA 65949733 65961054 65949733 ID=Msa0037040-mRNA-1;Parent=Msa0037040;Name=Msa0037040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=274|1|1|1|1|1|16|512|818
chr1_1 exon 65949733 65950295 65949733 ID=Msa0037040-mRNA-1:exon:21255;Parent=Msa0037040-mRNA-1
chr1_1 exon 65951422 65951597 65951422 ID=Msa0037040-mRNA-1:exon:21256;Parent=Msa0037040-mRNA-1
chr1_1 exon 65952807 65952972 65952807 ID=Msa0037040-mRNA-1:exon:21257;Parent=Msa0037040-mRNA-1
chr1_1 exon 65953180 65953232 65953180 ID=Msa0037040-mRNA-1:exon:21258;Parent=Msa0037040-mRNA-1
chr1_1 exon 65953550 65953693 65953550 ID=Msa0037040-mRNA-1:exon:21259;Parent=Msa0037040-mRNA-1
chr1_1 exon 65953811 65953915 65953811 ID=Msa0037040-mRNA-1:exon:21260;Parent=Msa0037040-mRNA-1
chr1_1 exon 65954011 65954136 65954011 ID=Msa0037040-mRNA-1:exon:21261;Parent=Msa0037040-mRNA-1
chr1_1 exon 65954330 65954518 65954330 ID=Msa0037040-mRNA-1:exon:21262;Parent=Msa0037040-mRNA-1
chr1_1 exon 65954961 65955067 65954961 ID=Msa0037040-mRNA-1:exon:21263;Parent=Msa0037040-mRNA-1
chr1_1 exon 65955158 65955320 65955158 ID=Msa0037040-mRNA-1:exon:21264;Parent=Msa0037040-mRNA-1
chr1_1 exon 65955483 65955548 65955483 ID=Msa0037040-mRNA-1:exon:21265;Parent=Msa0037040-mRNA-1
chr1_1 exon 65956457 65956550 65956457 ID=Msa0037040-mRNA-1:exon:21266;Parent=Msa0037040-mRNA-1
chr1_1 exon 65956725 65956837 65956725 ID=Msa0037040-mRNA-1:exon:21267;Parent=Msa0037040-mRNA-1
chr1_1 exon 65957172 65957242 65957172 ID=Msa0037040-mRNA-1:exon:21268;Parent=Msa0037040-mRNA-1
chr1_1 exon 65959331 65959481 65959331 ID=Msa0037040-mRNA-1:exon:21269;Parent=Msa0037040-mRNA-1
chr1_1 exon 65960099 65961054 65960099 ID=Msa0037040-mRNA-1:exon:21270;Parent=Msa0037040-mRNA-1
chr1_1 five_prime_UTR 65949733 65950006 65949733 ID=Msa0037040-mRNA-1:five_prime_utr;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65950007 65950295 65950007 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65951422 65951597 65951422 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65952807 65952972 65952807 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65953180 65953232 65953180 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65953550 65953693 65953550 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65953811 65953915 65953811 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65954011 65954136 65954011 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65954330 65954518 65954330 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65954961 65955067 65954961 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65955158 65955320 65955158 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65955483 65955548 65955483 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65956457 65956550 65956457 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65956725 65956837 65956725 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65957172 65957242 65957172 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65959331 65959481 65959331 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 CDS 65960099 65960542 65960099 ID=Msa0037040-mRNA-1:cds;Parent=Msa0037040-mRNA-1
chr1_1 three_prime_UTR 65960543 65961054 65960543 ID=Msa0037040-mRNA-1:three_prime_utr;Parent=Msa0037040-mRNA-1
Gene Sequence

>Msa0037040

ATGGCGACGGTGACAGCACCTCCGTCACTCCCCTTTGTACGGGCCACAACGACGCCGTCCAGTAAGAAGAAGAAGAATCATTCGAATTTCGGTCACTTTGGTCAAGTGGTTCGCAAGGACATGGAGTTTCTTAAAAGAGGATTTAACAATGGTGTTGAGTGGGCCAATGATGCATTCCGCATTCCTCAAATTGCCAAGAAAGTTGATGACTTTGTTTGGCTTCGAAATCTTGAAAACCCTCAAGCTACTTCGTTTTCCACTCCTTCTTGGCCTGAGCCTTGGTATCCAGGACTGTCTGGAGTGGATTTGCTCATGTATGATCTGAAGGCCTTGGAAGCATATGCTAGTTACTTCTATCATTTGTCTAAGATTTGGTCAAAGCCACTGCCTGAAACTTATGATCCTCAGGATGTCGCTCACTATTTCAGTGCCAGACCCCATGTTGTGGCTCTTCGTATGCTCGAGGTATTTTCCTCCTTTGCCTCTGCTGCGGTCAGTATTCGGACTTCAGGGTTAAGAAAATTTCTACCAATAAATGCAGAAGGGGATATGGACGATAAAACATCTGAATATAATTTTGGGTTGGTTTTAAAGGAAACAATGCTTAATCTTGGCCCCACATTTATAAAAGTTGGTCAGTCACTTTCCACGAGGCCAGATATCATTGGTGTTGAGATGTCCAAGGCATTGTCAGAATTGCATGATCAAATCCCTCCTTTTCCTAGGACTGTTGCTATGAAGATTCTTGAGGAAGAATTAGGAGCTCCCCTGGAATCATTTTTCAGCTACATTTCTGAGGAACCTGTAGCCGCTGCATCATTTGGTCAGGTTTACTTTGCCCGTACTATTGATGGTGTTAATGTTGCTGTAAAAGTTCAGCGTCCTAATTTGCGGCACGTGGTGGTGCGGGATATCTACATTCTTCGCCTTGGGTTGGGGCTGCTGCAAAAGATTGCCAAGAGAAAGAGTGACCCTCGCCTTTATGCTGATGAGCTTGGGCGAGGTTTTGTTGGTGAATTGGATTACACTTTAGAGGCAGCAAATGCATTGAAGTTTCGGGAAGTTCACTCGTCATTTTCTTTCATGCGCGTGCCAAAAATATTTTTACATTTAAGTCGAAAGAGAGTTCTGACCATGGAGTGGATGGTCGGTGAAAGTCCAACAGATTTAATCTCTGTATCTACCGGAAACTCTACTGAATATTCAGATAGGCAAAAAGTAGATGCAAAAAGGCGTCTACTTGATCTGGTCAATAAAGGTGTTGAAGCAACATTGGTTCAACTTCTTGAAACGGGCTTAATACACGCCGATCCACATCCTGGTAACTTGCGCTGCACTTCATCAGGAGAAATAGGGTTTTTGGATTTTGGTTTGCTCTGTCAAATGGAAAAAAGGCATCAATTCGCTATGCTGGCTTCAATAGTTCATATAGTAAACGGTGACTGGGCATCTCTTGTCAACGCTCTGATTGATATGGATATGGTGAGACCAGGGACAAATATCCGGCTTGTTACCATGGAACTGGAACAGGCCTTGGGGGAAGTGGAATTTAAGGATGGAATTCCTGATGTGAAGTTCAGCAGGGTTCTGGGAAAGATTTTGTCTGTAGCATTCAAGTATCATTTCCGTATGCCAGCATATTATACACTTGTCTTACGATCCCTAGCCTCTTTCGAAGGTTTGGCTATAGCTGCAGATAAAAAATTCAAGACTTTTGAAGCTGCCTACCCCTACGTCGTTCGGAAACTTCTAACAGAAAACTCAGCCGCAACAAGGAAAATATTGCATTCGGTACTTCTAAATCGAAAGAAGGAGTTCCAATGGCAAAGGCTTTCCATGTTCTTGAGAGTAGGGGCAACTAGGAAAGGCTTGCAACTAGTAACTTCAAATAGTGAGACTTCCCCCGATCAATCACCAAATAAGGCCGCTGGTACATTTGATATTGCATACTTGATCTTGACGATTTTACCATCCAAAGATGGTGTCGCTTTGAGAAGGCTTCTCATGACTGCTGACGGAGCTTCAATAATCAGAGCAATGGTCTCGAAGGAGGGAAAGGTCATCCGCCAACAACTTTGCAAGGTCATAGCCGATGCATTGTGTCAATGGATGATTAAATTATGTGGACAAGGAGTTACAGATACTCAATATCCAAGGGTGATGTTGGCTAATGGAACTAGCAACAAAGAATCTGGTCGATCTACTCGATCATCTTCGCCTGCATATGATTATATTTCCTTATTTAGAGATCGGCGACTTCGGGTGATATTTTCTAAGGTTTTGAAATCTGCAAGCAGTCATAAAATACTGATGCTGCGGTTCTGTTGGTCTTCCCTTGTTATAATCATTACAGCTTCAGCTTTGGCAAGCCATCGGGTTGTTCTGTCGCTGTCTGAGGCTTACCTGGGCCCAATATTCGATGCACCTAAGCGTAAGAGATATGCAGTCAGTGCATGA
Protein sequence

>Msa0037040

MATVTAPPSLPFVRATTTPSSKKKKNHSNFGHFGQVVRKDMEFLKRGFNNGVEWANDAFRIPQIAKKVDDFVWLRNLENPQATSFSTPSWPEPWYPGLSGVDLLMYDLKALEAYASYFYHLSKIWSKPLPETYDPQDVAHYFSARPHVVALRMLEVFSSFASAAVSIRTSGLRKFLPINAEGDMDDKTSEYNFGLVLKETMLNLGPTFIKVGQSLSTRPDIIGVEMSKALSELHDQIPPFPRTVAMKILEEELGAPLESFFSYISEEPVAAASFGQVYFARTIDGVNVAVKVQRPNLRHVVVRDIYILRLGLGLLQKIAKRKSDPRLYADELGRGFVGELDYTLEAANALKFREVHSSFSFMRVPKIFLHLSRKRVLTMEWMVGESPTDLISVSTGNSTEYSDRQKVDAKRRLLDLVNKGVEATLVQLLETGLIHADPHPGNLRCTSSGEIGFLDFGLLCQMEKRHQFAMLASIVHIVNGDWASLVNALIDMDMVRPGTNIRLVTMELEQALGEVEFKDGIPDVKFSRVLGKILSVAFKYHFRMPAYYTLVLRSLASFEGLAIAADKKFKTFEAAYPYVVRKLLTENSAATRKILHSVLLNRKKEFQWQRLSMFLRVGATRKGLQLVTSNSETSPDQSPNKAAGTFDIAYLILTILPSKDGVALRRLLMTADGASIIRAMVSKEGKVIRQQLCKVIADALCQWMIKLCGQGVTDTQYPRVMLANGTSNKESGRSTRSSSPAYDYISLFRDRRLRVIFSKVLKSASSHKILMLRFCWSSLVIIITASALASHRVVLSLSEAYLGPIFDAPKRKRYAVSA*