Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694770 | RHN54449.1 | 99.746 | 393 | 1 | 0 | 1 | 393 | 52 | 444 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694770 | sp|Q42807|STAD_SOYBN | 91.538 | 390 | 31 | 1 | 1 | 390 | 1 | 388 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694770 | A0A396HMB1 | 99.746 | 393 | 1 | 0 | 1 | 393 | 52 | 444 | 0.0 | 818 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0694770 | 0.802428 | 5.637494e-49 | -8.615850e-47 |
| Msa0011410 | Msa0694770 | 0.811253 | 7.680125e-51 | -8.615850e-47 |
| Msa0011450 | Msa0694770 | 0.827925 | 1.194754e-54 | -8.615850e-47 |
| Msa0037040 | Msa0694770 | 0.827754 | 1.313600e-54 | -8.615850e-47 |
| Msa0042950 | Msa0694770 | 0.821265 | 4.425240e-53 | -8.615850e-47 |
| Msa0046020 | Msa0694770 | 0.804551 | 2.045921e-49 | -8.615850e-47 |
| Msa0066890 | Msa0694770 | 0.844996 | 5.347321e-59 | -8.615850e-47 |
| Msa0094170 | Msa0694770 | 0.811856 | 5.678732e-51 | -8.615850e-47 |
| Msa0095810 | Msa0694770 | 0.811056 | 8.471659e-51 | -8.615850e-47 |
| Msa0105140 | Msa0694770 | 0.816573 | 5.158963e-52 | -8.615850e-47 |
| Msa0112550 | Msa0694770 | 0.820444 | 6.836380e-53 | -8.615850e-47 |
| Msa0116780 | Msa0694770 | 0.806289 | 8.841772e-50 | -8.615850e-47 |
| Msa0603310 | Msa0694770 | -0.809682 | 1.676699e-50 | -8.615850e-47 |
| Msa0644330 | Msa0694770 | -0.830288 | 3.194754e-55 | -8.615850e-47 |
| Msa0644340 | Msa0694770 | -0.803579 | 3.259257e-49 | -8.615850e-47 |
| Msa0644760 | Msa0694770 | 0.818532 | 1.865897e-52 | -8.615850e-47 |
| Msa0652190 | Msa0694770 | 0.893492 | 5.978502e-75 | -8.615850e-47 |
| Msa0676570 | Msa0694770 | 0.820551 | 6.460347e-53 | -8.615850e-47 |
| Msa0694770 | Msa0742370 | 0.823875 | 1.094387e-53 | -8.615850e-47 |
| Msa0694770 | Msa0752490 | 0.826833 | 2.183005e-54 | -8.615850e-47 |
| Msa0694770 | Msa0779450 | 0.821791 | 3.346725e-53 | -8.615850e-47 |
| Msa0694770 | Msa0793130 | 0.806579 | 7.681665e-50 | -8.615850e-47 |
| Msa0694770 | Msa0823480 | 0.825418 | 4.739240e-54 | -8.615850e-47 |
| Msa0694770 | Msa0862480 | 0.822134 | 2.785995e-53 | -8.615850e-47 |
| Msa0694770 | Msa0866060 | 0.806925 | 6.490593e-50 | -8.615850e-47 |
| Msa0694770 | Msa0901270 | -0.803266 | 3.783983e-49 | -8.615850e-47 |
| Msa0694770 | Msa0919120 | 0.811307 | 7.475102e-51 | -8.615850e-47 |
| Msa0694770 | Msa0966590 | -0.803791 | 2.945711e-49 | -8.615850e-47 |
| Msa0694770 | Msa1001120 | -0.805092 | 1.576950e-49 | -8.615850e-47 |
| Msa0694770 | Msa1011140 | 0.826264 | 2.984021e-54 | -8.615850e-47 |
| Msa0694770 | Msa1015360 | -0.841125 | 5.744786e-58 | -8.615850e-47 |
| Msa0694770 | Msa1039440 | 0.804419 | 2.180022e-49 | -8.615850e-47 |
| Msa0694770 | Msa1083620 | 0.808962 | 2.393433e-50 | -8.615850e-47 |
| Msa0694770 | Msa1086310 | 0.810624 | 1.050573e-50 | -8.615850e-47 |
| Msa0694770 | Msa1086500 | 0.811743 | 6.008410e-51 | -8.615850e-47 |
| Msa0694770 | Msa1102410 | 0.801785 | 7.643585e-49 | -8.615850e-47 |
| Msa0694770 | Msa1124990 | 0.805707 | 1.171999e-49 | -8.615850e-47 |
| Msa0694770 | Msa1132900 | 0.804682 | 1.921137e-49 | -8.615850e-47 |
| Msa0694770 | Msa1200060 | 0.819041 | 1.430006e-52 | -8.615850e-47 |
| Msa0694770 | Msa1207660 | 0.800831 | 1.198482e-48 | -8.615850e-47 |
| Msa0694770 | Msa1212150 | 0.803457 | 3.455001e-49 | -8.615850e-47 |
| Msa0694770 | Msa1219530 | 0.824536 | 7.653098e-54 | -8.615850e-47 |
| Msa0694770 | Msa1247200 | 0.802790 | 4.745399e-49 | -8.615850e-47 |
| Msa0694770 | Msa1255480 | 0.844055 | 9.578515e-59 | -8.615850e-47 |
| Msa0694770 | Msa1292060 | 0.822679 | 2.082599e-53 | -8.615850e-47 |
| Msa0694770 | Msa1292700 | 0.806745 | 7.086067e-50 | -8.615850e-47 |
| Msa0694770 | Msa1301280 | 0.815035 | 1.136215e-51 | -8.615850e-47 |
| Msa0694770 | Msa1325560 | 0.800755 | 1.241814e-48 | -8.615850e-47 |
| Msa0694770 | Msa1329080 | 0.814162 | 1.772796e-51 | -8.615850e-47 |
| Msa0694770 | Msa1331570 | 0.828430 | 9.027725e-55 | -8.615850e-47 |
| Msa0694770 | Msa1333220 | 0.825059 | 5.762191e-54 | -8.615850e-47 |
| Msa0694770 | Msa1338810 | 0.832337 | 1.001162e-55 | -8.615850e-47 |
| Msa0694770 | Msa1354320 | 0.803057 | 4.181184e-49 | -8.615850e-47 |
| Msa0694770 | Msa1361670 | 0.800513 | 1.391145e-48 | -8.615850e-47 |
| Msa0694770 | Msa1373420 | 0.807811 | 4.212669e-50 | -8.615850e-47 |
| Msa0694770 | Msa1386910 | 0.808974 | 2.378624e-50 | -8.615850e-47 |
| Msa0694770 | Msa1397560 | 0.803487 | 3.405515e-49 | -8.615850e-47 |
| Msa0694770 | Msa1405530 | -0.801709 | 7.921063e-49 | -8.615850e-47 |
| Msa0694770 | Msa1407160 | 0.810337 | 1.211761e-50 | -8.615850e-47 |
| Msa0694770 | Msa1409360 | 0.822801 | 1.950610e-53 | -8.615850e-47 |
| Msa0694770 | Msa1428230 | 0.821439 | 4.034901e-53 | -8.615850e-47 |
| Msa0694770 | Msa1451200 | 0.813546 | 2.423109e-51 | -8.615850e-47 |
| Msa0694770 | Msa1452230 | 0.834471 | 2.940859e-56 | -8.615850e-47 |
| Msa0133140 | Msa0694770 | 0.830111 | 3.530528e-55 | -8.615850e-47 |
| Msa0135030 | Msa0694770 | -0.815006 | 1.153032e-51 | -8.615850e-47 |
| Msa0136870 | Msa0694770 | 0.809633 | 1.718168e-50 | -8.615850e-47 |
| Msa0138990 | Msa0694770 | 0.814265 | 1.682099e-51 | -8.615850e-47 |
| Msa0145990 | Msa0694770 | 0.803645 | 3.158040e-49 | -8.615850e-47 |
| Msa0151380 | Msa0694770 | 0.819933 | 8.952836e-53 | -8.615850e-47 |
| Msa0151510 | Msa0694770 | 0.803170 | 3.962010e-49 | -8.615850e-47 |
| Msa0154880 | Msa0694770 | 0.839574 | 1.460573e-57 | -8.615850e-47 |
| Msa0154890 | Msa0694770 | 0.805462 | 1.319654e-49 | -8.615850e-47 |
| Msa0178840 | Msa0694770 | 0.808160 | 3.550748e-50 | -8.615850e-47 |
| Msa0183310 | Msa0694770 | 0.819813 | 9.534880e-53 | -8.615850e-47 |
| Msa0186400 | Msa0694770 | 0.808660 | 2.776304e-50 | -8.615850e-47 |
| Msa0189560 | Msa0694770 | 0.800648 | 1.305862e-48 | -8.615850e-47 |
| Msa0225790 | Msa0694770 | 0.804797 | 1.818140e-49 | -8.615850e-47 |
| Msa0369580 | Msa0694770 | 0.800426 | 1.449034e-48 | -8.615850e-47 |
| Msa0378440 | Msa0694770 | 0.811968 | 5.368307e-51 | -8.615850e-47 |
| Msa0437820 | Msa0694770 | 0.803158 | 3.983465e-49 | -8.615850e-47 |
| Msa0474120 | Msa0694770 | 0.800085 | 1.700342e-48 | -8.615850e-47 |
| Msa0474660 | Msa0694770 | 0.806386 | 8.435308e-50 | -8.615850e-47 |
| Msa0480900 | Msa0694770 | 0.836011 | 1.201255e-56 | -8.615850e-47 |
| Msa0260580 | Msa0694770 | 0.807168 | 5.765582e-50 | -8.615850e-47 |
| Msa0261020 | Msa0694770 | 0.815369 | 9.576250e-52 | -8.615850e-47 |
| Msa0261660 | Msa0694770 | 0.801272 | 9.739103e-49 | -8.615850e-47 |
| Msa0264580 | Msa0694770 | 0.807835 | 4.163610e-50 | -8.615850e-47 |
| Msa0293720 | Msa0694770 | -0.823158 | 1.609966e-53 | -8.615850e-47 |
| Msa0295030 | Msa0694770 | 0.807952 | 3.931507e-50 | -8.615850e-47 |
| Msa0320170 | Msa0694770 | -0.830766 | 2.440977e-55 | -8.615850e-47 |
| Msa0339970 | Msa0694770 | 0.808194 | 3.492011e-50 | -8.615850e-47 |
| Msa0523420 | Msa0694770 | 0.816372 | 5.720014e-52 | -8.615850e-47 |
| Msa0565370 | Msa0694770 | 0.814276 | 1.672746e-51 | -8.615850e-47 |
| Msa0565430 | Msa0694770 | 0.810308 | 1.229481e-50 | -8.615850e-47 |
| Msa0582550 | Msa0694770 | 0.804458 | 2.139153e-49 | -8.615850e-47 |
| Msa0590620 | Msa0694770 | 0.846242 | 2.456710e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694770 | MtrunA17_Chr5g0406961 | 99.746 | 393 | 1 | 0 | 1 | 393 | 52 | 444 | 0.0 | 818 |
| Msa0694770 | MtrunA17_Chr4g0045661 | 98.728 | 393 | 5 | 0 | 1 | 393 | 1 | 393 | 0.0 | 808 |
| Msa0694770 | MtrunA17_Chr1g0159321 | 72.271 | 339 | 90 | 2 | 59 | 393 | 52 | 390 | 0.0 | 526 |
| Msa0694770 | MtrunA17_Chr3g0126011 | 64.489 | 352 | 113 | 4 | 46 | 393 | 23 | 366 | 4.37e-169 | 477 |
| Msa0694770 | MtrunA17_Chr3g0125781 | 65.782 | 339 | 113 | 2 | 57 | 393 | 32 | 369 | 1.18e-168 | 476 |
| Msa0694770 | MtrunA17_Chr3g0125991 | 64.000 | 350 | 118 | 3 | 46 | 393 | 23 | 366 | 1.87e-166 | 470 |
| Msa0694770 | MtrunA17_Chr3g0125981 | 65.970 | 335 | 111 | 2 | 59 | 391 | 35 | 368 | 4.11e-165 | 467 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694770 | AT2G43710.1 | 80.299 | 401 | 71 | 2 | 1 | 393 | 1 | 401 | 0.0 | 674 |
| Msa0694770 | AT2G43710.2 | 80.050 | 401 | 72 | 2 | 1 | 393 | 1 | 401 | 0.0 | 672 |
| Msa0694770 | AT3G02630.1 | 76.786 | 392 | 90 | 1 | 1 | 391 | 3 | 394 | 0.0 | 639 |
| Msa0694770 | AT5G16240.1 | 77.778 | 360 | 77 | 2 | 33 | 391 | 35 | 392 | 0.0 | 597 |
| Msa0694770 | AT3G02610.2 | 68.750 | 400 | 110 | 6 | 3 | 393 | 20 | 413 | 0.0 | 551 |
| Msa0694770 | AT3G02610.1 | 68.750 | 400 | 110 | 6 | 3 | 393 | 18 | 411 | 0.0 | 551 |
| Msa0694770 | AT5G16230.1 | 67.895 | 380 | 118 | 3 | 18 | 393 | 22 | 401 | 0.0 | 538 |
| Msa0694770 | AT3G02620.2 | 68.338 | 379 | 108 | 4 | 21 | 393 | 34 | 406 | 0.0 | 536 |
| Msa0694770 | AT3G02620.1 | 68.338 | 379 | 108 | 4 | 21 | 393 | 31 | 403 | 0.0 | 536 |
| Msa0694770 | AT1G43800.1 | 65.274 | 383 | 126 | 4 | 14 | 391 | 9 | 389 | 0.0 | 518 |
| Msa0694770 | AT5G16230.2 | 74.154 | 325 | 80 | 3 | 73 | 393 | 1 | 325 | 2.89e-180 | 504 |
| Msa0694770 | AT3G02620.3 | 73.394 | 327 | 81 | 3 | 73 | 393 | 1 | 327 | 3.61e-179 | 501 |
Find 166 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATCAAAATTGCCTTTAA+AGG | 0.133216 | 4_4:-64132626 | None:intergenic |
| TGCTGATATACTTGAGTTTC+TGG | 0.154020 | 4_4:+64132140 | Msa0694770:CDS |
| ATTTGAAAATTTCAATCTTC+TGG | 0.154979 | 4_4:-64131044 | None:intergenic |
| AAGAAGAAGATGAATGAATT+TGG | 0.164360 | 4_4:-64129586 | None:intergenic |
| GCCCTACTCCTTGGGCTATT+TGG | 0.176215 | 4_4:+64131325 | Msa0694770:CDS |
| TCCTCCAGCCTTCTGATTCT+TGG | 0.181095 | 4_4:-64132243 | None:intergenic |
| GATAAAGAAAATTTAATTAA+TGG | 0.183957 | 4_4:+64132581 | Msa0694770:three_prime_UTR |
| AACACTTCTCTACAGGTTTA+AGG | 0.197232 | 4_4:-64131104 | None:intergenic |
| GGTGGAAGCCATAACGAATT+TGG | 0.215760 | 4_4:-64129706 | None:intergenic |
| GCCGACATAACCGGACTTTC+AGG | 0.282345 | 4_4:+64132180 | Msa0694770:CDS |
| ATAGGCTACATTGGTATATT+AGG | 0.295683 | 4_4:+64132746 | Msa0694770:three_prime_UTR |
| GTGTGTGAAAAGTCCTTTAA+AGG | 0.298067 | 4_4:+64132613 | Msa0694770:three_prime_UTR |
| TTTGTTGCTTGTAGCTTCAT+TGG | 0.306270 | 4_4:+64132722 | Msa0694770:three_prime_UTR |
| CATTCAGTTGGATTCATGAT+AGG | 0.310680 | 4_4:+64132304 | Msa0694770:CDS |
| TACTTGAACATGCACTTCTC+TGG | 0.313192 | 4_4:-64131004 | None:intergenic |
| CCAAACTATGCTTAATACTT+TGG | 0.323055 | 4_4:+64131275 | Msa0694770:CDS |
| GTACTACTCTAAGCATATTA+AGG | 0.323956 | 4_4:+64132330 | Msa0694770:exon |
| AGGTTTAAGGTGAGTCAATA+AGG | 0.334045 | 4_4:-64131091 | None:intergenic |
| AGAAGAAGATGAATGAATTT+GGG | 0.334625 | 4_4:-64129585 | None:intergenic |
| CTGAGAGCCATTGTTGGATT+CGG | 0.338634 | 4_4:-64129618 | None:intergenic |
| AGATGATTACTTTGTTGTTC+TGG | 0.344575 | 4_4:+64131215 | Msa0694770:CDS |
| TTAAGCATAGTTTGGTAAGT+AGG | 0.345744 | 4_4:-64131267 | None:intergenic |
| TTTCAAATCGTTGGAGGGTT+GGG | 0.350638 | 4_4:+64131059 | Msa0694770:CDS |
| ATGGCTTCCACCCTCCGTTC+TGG | 0.352185 | 4_4:+64129717 | Msa0694770:CDS |
| CCAAAGTATTAAGCATAGTT+TGG | 0.352890 | 4_4:-64131275 | None:intergenic |
| AATCCAACTGAATGCAAGTT+TGG | 0.355409 | 4_4:-64132295 | None:intergenic |
| TTTGAAAATTTCAATCTTCT+GGG | 0.358302 | 4_4:-64131043 | None:intergenic |
| CAAATCTCCCAAATTCGTTA+TGG | 0.367585 | 4_4:+64129698 | Msa0694770:CDS |
| TGTTGTTCTGGTTGGAGATA+TGG | 0.377751 | 4_4:+64131227 | Msa0694770:CDS |
| GCTTGTAGCTTCATTGGAAT+AGG | 0.383035 | 4_4:+64132728 | Msa0694770:three_prime_UTR |
| AATCTTCCAGCAACTCTACT+TGG | 0.387112 | 4_4:+64132362 | Msa0694770:three_prime_UTR |
| TCTGTTAAGCATAAGCAATC+AGG | 0.396112 | 4_4:+64132454 | Msa0694770:three_prime_UTR |
| CTCTTTCTCTCTCCCTCAAA+TGG | 0.396861 | 4_4:+64129668 | Msa0694770:CDS |
| AAAGATAGTGGAAAAGCTAT+TGG | 0.403395 | 4_4:+64131960 | Msa0694770:CDS |
| ATTGCTCCAAGTAGAGTTGC+TGG | 0.409276 | 4_4:-64132368 | None:intergenic |
| CTGCCCGATCCTTCCTCAGA+TGG | 0.416238 | 4_4:+64131144 | Msa0694770:CDS |
| GTGGAAGCCATAACGAATTT+GGG | 0.417172 | 4_4:-64129705 | None:intergenic |
| CATCCAAACTTGCATTCAGT+TGG | 0.428488 | 4_4:+64132292 | Msa0694770:CDS |
| AGGATGTTTGAGTAGGGAAA+GGG | 0.435634 | 4_4:-64129647 | None:intergenic |
| GAGAAAGAGGATGTTTGAGT+AGG | 0.438225 | 4_4:-64129654 | None:intergenic |
| AGAACAACAAAGTAATCATC+TGG | 0.438790 | 4_4:-64131213 | None:intergenic |
| GATATACTTGAGTTTCTGGT+TGG | 0.441237 | 4_4:+64132144 | Msa0694770:CDS |
| TGGAAGGTGGCCGACATAAC+CGG | 0.441892 | 4_4:+64132171 | Msa0694770:CDS |
| AAGACAATTCAGTACCTGAT+TGG | 0.443825 | 4_4:+64131441 | Msa0694770:CDS |
| AGAAAGAGGATGTTTGAGTA+GGG | 0.448025 | 4_4:-64129653 | None:intergenic |
| GGTTGCCAACACTTCTCTAC+AGG | 0.448685 | 4_4:-64131111 | None:intergenic |
| CAGGTGCCAGCCCTACTCCT+TGG | 0.452555 | 4_4:+64131316 | Msa0694770:CDS |
| TCACACCAACTCAAGTATTC+CGG | 0.455637 | 4_4:-64132687 | None:intergenic |
| TGTGTTTCCATGCGATATAA+AGG | 0.456327 | 4_4:-64131845 | None:intergenic |
| CAGCAGAATAGTTATCAAAC+AGG | 0.457192 | 4_4:-64132080 | None:intergenic |
| ATTCAGTACCTGATTGGGTC+TGG | 0.458830 | 4_4:+64131447 | Msa0694770:CDS |
| ATATACTTGAGTTTCTGGTT+GGG | 0.460993 | 4_4:+64132145 | Msa0694770:CDS |
| GCCGCGTTCCTTAGCAAGCC+TGG | 0.462444 | 4_4:-64131869 | None:intergenic |
| AGGTGCCAGCCCTACTCCTT+GGG | 0.463988 | 4_4:+64131317 | Msa0694770:CDS |
| TCCAGCCTTCTGATTCTTGG+TGG | 0.465016 | 4_4:-64132240 | None:intergenic |
| TCGTCCCTCACCTGAAAGTC+CGG | 0.465890 | 4_4:-64132190 | None:intergenic |
| TCTGCTGTTGCCCAGCGCAT+TGG | 0.472536 | 4_4:+64132096 | Msa0694770:CDS |
| GGAACGCGGCGATTTGAAGT+TGG | 0.473114 | 4_4:+64131882 | Msa0694770:CDS |
| TTACCATTCCAGACCCAATC+AGG | 0.473874 | 4_4:-64131455 | None:intergenic |
| AACAAGTATCTCTACTTGTC+CGG | 0.474429 | 4_4:+64131393 | Msa0694770:CDS |
| GTTGCTCTGAGAGCCATTGT+TGG | 0.474495 | 4_4:-64129624 | None:intergenic |
| TCCAAATAGCCCAAGGAGTA+GGG | 0.477229 | 4_4:-64131326 | None:intergenic |
| CAGTGTAGACTCCAATGCGC+TGG | 0.478141 | 4_4:-64132107 | None:intergenic |
| GTGTAGATAAAGCCAAGGTA+AGG | 0.480370 | 4_4:-64131802 | None:intergenic |
| GTTTCTGGTTGGGAGGTGGA+AGG | 0.480811 | 4_4:+64132155 | Msa0694770:CDS |
| TACTTGAGTTTCTGGTTGGG+AGG | 0.483685 | 4_4:+64132148 | Msa0694770:CDS |
| TATCGCATGGAAACACAGCC+AGG | 0.484282 | 4_4:+64131851 | Msa0694770:CDS |
| GATGGAGTTCGTGATGAAAC+AGG | 0.485012 | 4_4:+64131297 | Msa0694770:CDS |
| AGACAATTCAGTACCTGATT+GGG | 0.486001 | 4_4:+64131442 | Msa0694770:CDS |
| AGAGGTTGAAAATATTAAGA+AGG | 0.489403 | 4_4:+64130969 | Msa0694770:CDS |
| AAGGCACAGGAGTATGTTTG+TGG | 0.492271 | 4_4:+64132213 | Msa0694770:CDS |
| ATGAATGAATTTGGGAATCA+CGG | 0.492309 | 4_4:-64129577 | None:intergenic |
| ATTTGAGACTGGCCATTTGA+GGG | 0.496342 | 4_4:-64129680 | None:intergenic |
| CTCCTTGGGCTATTTGGACA+AGG | 0.500836 | 4_4:+64131331 | Msa0694770:CDS |
| TTATTCTTCATTGCGGTCAC+CGG | 0.501935 | 4_4:+64132668 | Msa0694770:three_prime_UTR |
| GATTTGAGACTGGCCATTTG+AGG | 0.502339 | 4_4:-64129681 | None:intergenic |
| CGTCTCGGCCATCATACATC+AGG | 0.503492 | 4_4:-64132053 | None:intergenic |
| AAAGCAATAACTGTTCCATC+AGG | 0.503808 | 4_4:-64131991 | None:intergenic |
| TTGAGTTTCTGGTTGGGAGG+TGG | 0.503890 | 4_4:+64132151 | Msa0694770:CDS |
| TATCAAACAGGTTGTCGTCT+CGG | 0.505744 | 4_4:-64132068 | None:intergenic |
| GACTGCTTACACAAAGATAG+TGG | 0.506240 | 4_4:+64131948 | Msa0694770:CDS |
| CCATCATACATCAGGTGTGC+TGG | 0.507354 | 4_4:-64132045 | None:intergenic |
| ATTCAGTTGGATTCATGATA+GGG | 0.509293 | 4_4:+64132305 | Msa0694770:CDS |
| ATCGTTGGAGGGTTGGGCTG+AGG | 0.511095 | 4_4:+64131065 | Msa0694770:CDS |
| ACTATGCTTAATACTTTGGA+TGG | 0.522020 | 4_4:+64131279 | Msa0694770:CDS |
| GTGTGAGGCAGAGGCAGGAA+TGG | 0.523359 | 4_4:-64129504 | None:intergenic |
| CTGTTAAGCATAAGCAATCA+GGG | 0.523483 | 4_4:+64132455 | Msa0694770:three_prime_UTR |
| GGGCTATTTGGACAAGGGCA+TGG | 0.524428 | 4_4:+64131337 | Msa0694770:CDS |
| CAGAGGCAGGAATGGACAAT+GGG | 0.526291 | 4_4:-64129496 | None:intergenic |
| CTACACTTCATTTCAAGAGA+GGG | 0.526696 | 4_4:+64131819 | Msa0694770:CDS |
| TTCATTGGAATAGGCTACAT+TGG | 0.527622 | 4_4:+64132737 | Msa0694770:three_prime_UTR |
| GGATGTTTGAGTAGGGAAAG+GGG | 0.527899 | 4_4:-64129646 | None:intergenic |
| CATTTGAGGGAGAGAGAAAG+AGG | 0.528146 | 4_4:-64129667 | None:intergenic |
| GAGGATGTTTGAGTAGGGAA+AGG | 0.530286 | 4_4:-64129648 | None:intergenic |
| AATCCATCTGAGGAAGGATC+GGG | 0.533112 | 4_4:-64131147 | None:intergenic |
| ATATCACTACTACAAGGAAA+AGG | 0.537233 | 4_4:-64132517 | None:intergenic |
| ACTTGAACATGCACTTCTCT+GGG | 0.540588 | 4_4:-64131003 | None:intergenic |
| GCCACCAAGAATCAGAAGGC+TGG | 0.541195 | 4_4:+64132239 | Msa0694770:CDS |
| GATTACTTTGTTGTTCTGGT+TGG | 0.542691 | 4_4:+64131219 | Msa0694770:CDS |
| AATAGCCCAAGGAGTAGGGC+TGG | 0.546034 | 4_4:-64131322 | None:intergenic |
| AGGTGAGGGACGAAAGGCAC+AGG | 0.547789 | 4_4:+64132200 | Msa0694770:CDS |
| GAATCCATCTGAGGAAGGAT+CGG | 0.550340 | 4_4:-64131148 | None:intergenic |
| TTGAAAATTTCAATCTTCTG+GGG | 0.552491 | 4_4:-64131042 | None:intergenic |
| ACCTGAAAGTCCGGTTATGT+CGG | 0.554587 | 4_4:-64132181 | None:intergenic |
| GGCAGGAATGGACAATGGGA+AGG | 0.555141 | 4_4:-64129492 | None:intergenic |
| TGCGTGTATGTGTGAGGCAG+AGG | 0.557895 | 4_4:-64129513 | None:intergenic |
| GTCCAAATAGCCCAAGGAGT+AGG | 0.558680 | 4_4:-64131327 | None:intergenic |
| TCTGGTTGGGAGGTGGAAGG+TGG | 0.560034 | 4_4:+64132158 | Msa0694770:CDS |
| AGGGCGACCTTTATATCGCA+TGG | 0.560815 | 4_4:+64131838 | Msa0694770:CDS |
| AAAATTTCAATCTTCTGGGG+AGG | 0.561159 | 4_4:-64131039 | None:intergenic |
| AGAGAAGTGTTGGCAACCAC+AGG | 0.562702 | 4_4:+64131116 | Msa0694770:CDS |
| TTGAAGTTGGCTCAGATCTG+TGG | 0.563389 | 4_4:+64131895 | Msa0694770:CDS |
| GTACCTGATTGGGTCTGGAA+TGG | 0.566647 | 4_4:+64131452 | Msa0694770:CDS |
| AGTGTAGACTCCAATGCGCT+GGG | 0.573443 | 4_4:-64132106 | None:intergenic |
| AAGTGAAGGAACTGAGAGAG+AGG | 0.573671 | 4_4:+64131178 | Msa0694770:CDS |
| AGGCACAGGAGTATGTTTGT+GGG | 0.574102 | 4_4:+64132214 | Msa0694770:CDS |
| AAGTATATCAGCATAGTCCT+TGG | 0.575108 | 4_4:-64132130 | None:intergenic |
| TTAAACCTGTAGAGAAGTGT+TGG | 0.579690 | 4_4:+64131106 | Msa0694770:CDS |
| TCTACACTTCATTTCAAGAG+AGG | 0.581234 | 4_4:+64131818 | Msa0694770:CDS |
| GCAGGAATGGACAATGGGAA+GGG | 0.583925 | 4_4:-64129491 | None:intergenic |
| TTGTCTCATATCAACACGGC+CGG | 0.584046 | 4_4:-64131412 | None:intergenic |
| GCAGAGGCAGGAATGGACAA+TGG | 0.584692 | 4_4:-64129497 | None:intergenic |
| CTCATGGCGTTTCTCATCAG+AGG | 0.584747 | 4_4:-64131926 | None:intergenic |
| TTGTCATTTATTCTTCATTG+CGG | 0.586963 | 4_4:+64132661 | Msa0694770:three_prime_UTR |
| TGTATGTGTGAGGCAGAGGC+AGG | 0.589118 | 4_4:-64129509 | None:intergenic |
| GAATTTGGGAGATTTGAGAC+TGG | 0.593752 | 4_4:-64129691 | None:intergenic |
| TCTTCTGGGGAGGCATAGAG+TGG | 0.595890 | 4_4:-64131029 | None:intergenic |
| GAGAGCTTCAGCAAGAGCAA+AGG | 0.595934 | 4_4:+64132266 | Msa0694770:CDS |
| AAACACAGCCAGGCTTGCTA+AGG | 0.597013 | 4_4:+64131861 | Msa0694770:CDS |
| TGTAGATAAAGCCAAGGTAA+GGG | 0.598444 | 4_4:-64131801 | None:intergenic |
| AATTTGATGGATAGGATCCT+CGG | 0.609645 | 4_4:+64131767 | Msa0694770:intron |
| ACTTTCAGGTGAGGGACGAA+AGG | 0.610348 | 4_4:+64132194 | Msa0694770:CDS |
| ATCGAATCCGAATCCAACAA+TGG | 0.610743 | 4_4:+64129611 | Msa0694770:exon |
| CCAGCACACCTGATGTATGA+TGG | 0.611997 | 4_4:+64132045 | Msa0694770:CDS |
| CTATTGGAGATTGATCCTGA+TGG | 0.612852 | 4_4:+64131976 | Msa0694770:CDS |
| GCCCTTGTCCAAATAGCCCA+AGG | 0.616169 | 4_4:-64131333 | None:intergenic |
| TCCTTGGGCTATTTGGACAA+GGG | 0.616511 | 4_4:+64131332 | Msa0694770:CDS |
| TCTTCGAATCCATCTGAGGA+AGG | 0.617698 | 4_4:-64131153 | None:intergenic |
| AATACTTGAGTTGGTGTGAG+TGG | 0.621234 | 4_4:+64132691 | Msa0694770:three_prime_UTR |
| GCCAGGCTTGCTAAGGAACG+CGG | 0.621905 | 4_4:+64131868 | Msa0694770:CDS |
| AGTGAAGGAACTGAGAGAGA+GGG | 0.623958 | 4_4:+64131179 | Msa0694770:CDS |
| ACTGAGAATAGCCCTTACCT+TGG | 0.627826 | 4_4:+64131790 | Msa0694770:CDS |
| TGACTTGGAACCAGAACGGA+GGG | 0.629360 | 4_4:-64129727 | None:intergenic |
| GGTCACCGGAATACTTGAGT+TGG | 0.629941 | 4_4:+64132682 | Msa0694770:three_prime_UTR |
| ATGAAGTGTAGATAAAGCCA+AGG | 0.630791 | 4_4:-64131807 | None:intergenic |
| TTGCTCTTCGAATCCATCTG+AGG | 0.631251 | 4_4:-64131157 | None:intergenic |
| CAATTTGTCTCATATCAACA+CGG | 0.633578 | 4_4:-64131416 | None:intergenic |
| TCTTTGTGTAAGCAGTCTCA+TGG | 0.635579 | 4_4:-64131942 | None:intergenic |
| CTTGGAACCAGAACGGAGGG+TGG | 0.638218 | 4_4:-64129724 | None:intergenic |
| TGGATTCGAAGAGCAAGTGA+AGG | 0.638840 | 4_4:+64131164 | Msa0694770:CDS |
| CATTGGAGTCTACACTGCCA+AGG | 0.641019 | 4_4:+64132113 | Msa0694770:CDS |
| GGTTGCCACCAAGAATCAGA+AGG | 0.645168 | 4_4:+64132235 | Msa0694770:CDS |
| TAAAACATATCACTACTACA+AGG | 0.651295 | 4_4:-64132523 | None:intergenic |
| GAAACAATCGTTCTGTTGCG+TGG | 0.663763 | 4_4:+64132431 | Msa0694770:three_prime_UTR |
| ATAACCGGACTTTCAGGTGA+GGG | 0.664241 | 4_4:+64132186 | Msa0694770:CDS |
| ACCAAGAATCAGAAGGCTGG+AGG | 0.675099 | 4_4:+64132242 | Msa0694770:CDS |
| TTACTGACTTGGAACCAGAA+CGG | 0.677723 | 4_4:-64129731 | None:intergenic |
| AGAGTATGCGTGTATGTGTG+AGG | 0.682100 | 4_4:-64129519 | None:intergenic |
| TAAGGGCTATTCTCAGTCCG+AGG | 0.684437 | 4_4:-64131784 | None:intergenic |
| CATAACCGGACTTTCAGGTG+AGG | 0.689606 | 4_4:+64132185 | Msa0694770:CDS |
| CTTCTGGGGAGGCATAGAGT+GGG | 0.692583 | 4_4:-64131028 | None:intergenic |
| TGAACATGCACTTCTCTGGG+AGG | 0.699562 | 4_4:-64131000 | None:intergenic |
| TGTTAAGCATAAGCAATCAG+GGG | 0.708374 | 4_4:+64132456 | Msa0694770:three_prime_UTR |
| ACAGCTGAAGAAAATAGACA+TGG | 0.709949 | 4_4:+64131360 | Msa0694770:CDS |
| GGATCGGGCAGAAAATCCTG+TGG | 0.717346 | 4_4:-64131132 | None:intergenic |
| CTGACTTGGAACCAGAACGG+AGG | 0.718153 | 4_4:-64129728 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCAATTACTATAATTTT+TGG | + | chr4_4:64130350-64130369 | Msa0694770:intron | 10.0% |
| !! | AGATTATCATAAAAAATAAT+CGG | - | chr4_4:64130651-64130670 | None:intergenic | 10.0% |
| !! | GATAAAGAAAATTTAATTAA+TGG | + | chr4_4:64132581-64132600 | Msa0694770:three_prime_UTR | 10.0% |
| !!! | ATTGATATTGAATTGATTTT+TGG | + | chr4_4:64129881-64129900 | Msa0694770:intron | 15.0% |
| !! | CAATCAAAAAAACAAAATTA+AGG | - | chr4_4:64130228-64130247 | None:intergenic | 15.0% |
| !! | TAAAAAATAATCGGTAAATA+TGG | - | chr4_4:64130642-64130661 | None:intergenic | 15.0% |
| !!! | ATTTTTTATGATAATCTTGT+TGG | + | chr4_4:64130654-64130673 | Msa0694770:intron | 15.0% |
| !!! | TATTGAATTGATTTTTGGTT+TGG | + | chr4_4:64129886-64129905 | Msa0694770:intron | 20.0% |
| !!! | GTTTTTTTGATTGTATTCTA+TGG | + | chr4_4:64130235-64130254 | Msa0694770:intron | 20.0% |
| !! | ATAGTAATTGATTATACACA+CGG | - | chr4_4:64130344-64130363 | None:intergenic | 20.0% |
| !!! | TATAATTTTTGGAACTTGTT+GGG | + | chr4_4:64130361-64130380 | Msa0694770:intron | 20.0% |
| !! | ATATCATCAAAATGACAATT+TGG | - | chr4_4:64130767-64130786 | None:intergenic | 20.0% |
| !! | ATATCATTCATTTCTTTAAC+AGG | - | chr4_4:64130861-64130880 | None:intergenic | 20.0% |
| !! | TTTGAAAATTTCAATCTTCT+GGG | - | chr4_4:64131046-64131065 | None:intergenic | 20.0% |
| !! | ATTTGAAAATTTCAATCTTC+TGG | - | chr4_4:64131047-64131066 | None:intergenic | 20.0% |
| !!! | TGTTTATATCTCTCTAATTT+TGG | + | chr4_4:64131736-64131755 | Msa0694770:intron | 20.0% |
| ! | AGAAGAAGATGAATGAATTT+GGG | - | chr4_4:64129588-64129607 | None:intergenic | 25.0% |
| ! | AAGAAGAAGATGAATGAATT+TGG | - | chr4_4:64129589-64129608 | None:intergenic | 25.0% |
| ! | AGATACTAGAGAAAAACATA+GGG | - | chr4_4:64130180-64130199 | None:intergenic | 25.0% |
| ! | AAGATACTAGAGAAAAACAT+AGG | - | chr4_4:64130181-64130200 | None:intergenic | 25.0% |
| ! | CTTCGCTATAAATTCAATTT+GGG | + | chr4_4:64130282-64130301 | Msa0694770:intron | 25.0% |
| !!! | CTATAATTTTTGGAACTTGT+TGG | + | chr4_4:64130360-64130379 | Msa0694770:intron | 25.0% |
| ! | TGATGAATGTTTACAGAAAT+TGG | + | chr4_4:64130452-64130471 | Msa0694770:intron | 25.0% |
| !!! | ATCAAATTTTAATGAGCCAT+TGG | - | chr4_4:64130505-64130524 | None:intergenic | 25.0% |
| ! | TTGATTAACCTATGCATTTA+AGG | + | chr4_4:64130717-64130736 | Msa0694770:intron | 25.0% |
| !!! | TCATTTTGATGATATCTACA+TGG | + | chr4_4:64130772-64130791 | Msa0694770:intron | 25.0% |
| !!! | CATTTTGATGATATCTACAT+GGG | + | chr4_4:64130773-64130792 | Msa0694770:intron | 25.0% |
| ! | TGAATTGTTAATATCATTCG+TGG | - | chr4_4:64130817-64130836 | None:intergenic | 25.0% |
| ! | TGAATGATATTGATACAATC+TGG | + | chr4_4:64130871-64130890 | Msa0694770:intron | 25.0% |
| !!! | AGTTATTTTATATTGCAGAG+AGG | + | chr4_4:64130951-64130970 | Msa0694770:intron | 25.0% |
| ! | AGAGGTTGAAAATATTAAGA+AGG | + | chr4_4:64130969-64130988 | Msa0694770:CDS | 25.0% |
| ! | TTGAAAATTTCAATCTTCTG+GGG | - | chr4_4:64131045-64131064 | None:intergenic | 25.0% |
| !! | GATTGAAATTTTCAAATCGT+TGG | + | chr4_4:64131050-64131069 | Msa0694770:CDS | 25.0% |
| !! | GATACTGAATTTGCTTAAAA+TGG | + | chr4_4:64131552-64131571 | Msa0694770:intron | 25.0% |
| ! | TGAGTCAAAAATGAATTCAA+GGG | - | chr4_4:64131679-64131698 | None:intergenic | 25.0% |
| ! | TTGAGTCAAAAATGAATTCA+AGG | - | chr4_4:64131680-64131699 | None:intergenic | 25.0% |
| !!! | TTCAGTTTGTCATTTTTGTT+TGG | + | chr4_4:64132407-64132426 | Msa0694770:three_prime_UTR | 25.0% |
| ! | TAAAACATATCACTACTACA+AGG | - | chr4_4:64132526-64132545 | None:intergenic | 25.0% |
| !! | TTGTCATTTATTCTTCATTG+CGG | + | chr4_4:64132661-64132680 | Msa0694770:three_prime_UTR | 25.0% |
| ATGAATGAATTTGGGAATCA+CGG | - | chr4_4:64129580-64129599 | None:intergenic | 30.0% | |
| ATGCACGATGAATTGAAAAA+GGG | - | chr4_4:64129782-64129801 | None:intergenic | 30.0% | |
| AATGCACGATGAATTGAAAA+AGG | - | chr4_4:64129783-64129802 | None:intergenic | 30.0% | |
| !!! | TTTTTGGTTTGGTGAAATGA+TGG | + | chr4_4:64129897-64129916 | Msa0694770:intron | 30.0% |
| !! | TGCATGTATAGTCTTATAGT+TGG | + | chr4_4:64129960-64129979 | Msa0694770:intron | 30.0% |
| AGAACGTTGTGAATATAAGT+TGG | - | chr4_4:64130034-64130053 | None:intergenic | 30.0% | |
| GCTTCGCTATAAATTCAATT+TGG | + | chr4_4:64130281-64130300 | Msa0694770:intron | 30.0% | |
| !! | AATTTTAATGAGCCATTGGA+CGG | - | chr4_4:64130501-64130520 | None:intergenic | 30.0% |
| ! | AAAGTTACCGAACTTCATTT+TGG | + | chr4_4:64130547-64130566 | Msa0694770:intron | 30.0% |
| ATAATCGGTAAATATGGACT+CGG | - | chr4_4:64130636-64130655 | None:intergenic | 30.0% | |
| ATTAACCTATGCATTTAAGG+TGG | + | chr4_4:64130720-64130739 | Msa0694770:intron | 30.0% | |
| CAAAAGCAAGATCATTTGAA+TGG | + | chr4_4:64130908-64130927 | Msa0694770:intron | 30.0% | |
| ! | TGAAATTTTCAAATCGTTGG+AGG | + | chr4_4:64131053-64131072 | Msa0694770:CDS | 30.0% |
| ! | GAAATTTTCAAATCGTTGGA+GGG | + | chr4_4:64131054-64131073 | Msa0694770:CDS | 30.0% |
| AGAACAACAAAGTAATCATC+TGG | - | chr4_4:64131216-64131235 | None:intergenic | 30.0% | |
| !! | AGATGATTACTTTGTTGTTC+TGG | + | chr4_4:64131215-64131234 | Msa0694770:CDS | 30.0% |
| TTAAGCATAGTTTGGTAAGT+AGG | - | chr4_4:64131270-64131289 | None:intergenic | 30.0% | |
| ! | CCAAAGTATTAAGCATAGTT+TGG | - | chr4_4:64131278-64131297 | None:intergenic | 30.0% |
| CCAAACTATGCTTAATACTT+TGG | + | chr4_4:64131275-64131294 | Msa0694770:CDS | 30.0% | |
| ACTATGCTTAATACTTTGGA+TGG | + | chr4_4:64131279-64131298 | Msa0694770:CDS | 30.0% | |
| CAATTTGTCTCATATCAACA+CGG | - | chr4_4:64131419-64131438 | None:intergenic | 30.0% | |
| ! | TCTCTCTAATTTTGGATTGA+TGG | + | chr4_4:64131744-64131763 | Msa0694770:intron | 30.0% |
| TTTGGATTGATGGAATTTGA+TGG | + | chr4_4:64131754-64131773 | Msa0694770:intron | 30.0% | |
| ! | ATTGATGGAATTTGATGGAT+AGG | + | chr4_4:64131759-64131778 | Msa0694770:intron | 30.0% |
| !! | AAAGATAGTGGAAAAGCTAT+TGG | + | chr4_4:64131960-64131979 | Msa0694770:CDS | 30.0% |
| !! | ATATACTTGAGTTTCTGGTT+GGG | + | chr4_4:64132145-64132164 | Msa0694770:CDS | 30.0% |
| ATTCAGTTGGATTCATGATA+GGG | + | chr4_4:64132305-64132324 | Msa0694770:CDS | 30.0% | |
| GTACTACTCTAAGCATATTA+AGG | + | chr4_4:64132330-64132349 | Msa0694770:exon | 30.0% | |
| ATATCACTACTACAAGGAAA+AGG | - | chr4_4:64132520-64132539 | None:intergenic | 30.0% | |
| !! | TCCTTTAAAGGCAATTTTGA+TGG | + | chr4_4:64132625-64132644 | Msa0694770:three_prime_UTR | 30.0% |
| AGAAAGAGGATGTTTGAGTA+GGG | - | chr4_4:64129656-64129675 | None:intergenic | 35.0% | |
| CAAATCTCCCAAATTCGTTA+TGG | + | chr4_4:64129698-64129717 | Msa0694770:CDS | 35.0% | |
| ! | GAAAAAAGGGATTACTGACT+TGG | - | chr4_4:64129745-64129764 | None:intergenic | 35.0% |
| TGCACGATGAATTGAAAAAG+GGG | - | chr4_4:64129781-64129800 | None:intergenic | 35.0% | |
| !! | GTATAGTCTTATAGTTGGTG+AGG | + | chr4_4:64129965-64129984 | Msa0694770:intron | 35.0% |
| !!! | TATAGTTGGTGAGGATTTTC+AGG | + | chr4_4:64129974-64129993 | Msa0694770:intron | 35.0% |
| TGATGGTCCAAAATGAAGTT+CGG | - | chr4_4:64130557-64130576 | None:intergenic | 35.0% | |
| GACAGTCTGATCAAAATTGA+TGG | - | chr4_4:64130574-64130593 | None:intergenic | 35.0% | |
| ! | AAAATTTCAATCTTCTGGGG+AGG | - | chr4_4:64131042-64131061 | None:intergenic | 35.0% |
| ! | AGGTTTAAGGTGAGTCAATA+AGG | - | chr4_4:64131094-64131113 | None:intergenic | 35.0% |
| AACACTTCTCTACAGGTTTA+AGG | - | chr4_4:64131107-64131126 | None:intergenic | 35.0% | |
| ! | TTAAACCTGTAGAGAAGTGT+TGG | + | chr4_4:64131106-64131125 | Msa0694770:CDS | 35.0% |
| !! | GATTACTTTGTTGTTCTGGT+TGG | + | chr4_4:64131219-64131238 | Msa0694770:CDS | 35.0% |
| ACAGCTGAAGAAAATAGACA+TGG | + | chr4_4:64131360-64131379 | Msa0694770:CDS | 35.0% | |
| AACAAGTATCTCTACTTGTC+CGG | + | chr4_4:64131393-64131412 | Msa0694770:CDS | 35.0% | |
| AAGACAATTCAGTACCTGAT+TGG | + | chr4_4:64131441-64131460 | Msa0694770:CDS | 35.0% | |
| AGACAATTCAGTACCTGATT+GGG | + | chr4_4:64131442-64131461 | Msa0694770:CDS | 35.0% | |
| ! | AATTTGATGGATAGGATCCT+CGG | + | chr4_4:64131767-64131786 | Msa0694770:intron | 35.0% |
| TGTAGATAAAGCCAAGGTAA+GGG | - | chr4_4:64131804-64131823 | None:intergenic | 35.0% | |
| ATGAAGTGTAGATAAAGCCA+AGG | - | chr4_4:64131810-64131829 | None:intergenic | 35.0% | |
| TCTACACTTCATTTCAAGAG+AGG | + | chr4_4:64131818-64131837 | Msa0694770:CDS | 35.0% | |
| CTACACTTCATTTCAAGAGA+GGG | + | chr4_4:64131819-64131838 | Msa0694770:CDS | 35.0% | |
| TGTGTTTCCATGCGATATAA+AGG | - | chr4_4:64131848-64131867 | None:intergenic | 35.0% | |
| AAAGCAATAACTGTTCCATC+AGG | - | chr4_4:64131994-64132013 | None:intergenic | 35.0% | |
| CAGCAGAATAGTTATCAAAC+AGG | - | chr4_4:64132083-64132102 | None:intergenic | 35.0% | |
| AAGTATATCAGCATAGTCCT+TGG | - | chr4_4:64132133-64132152 | None:intergenic | 35.0% | |
| TGCTGATATACTTGAGTTTC+TGG | + | chr4_4:64132140-64132159 | Msa0694770:CDS | 35.0% | |
| !! | GATATACTTGAGTTTCTGGT+TGG | + | chr4_4:64132144-64132163 | Msa0694770:CDS | 35.0% |
| AATCCAACTGAATGCAAGTT+TGG | - | chr4_4:64132298-64132317 | None:intergenic | 35.0% | |
| CATTCAGTTGGATTCATGAT+AGG | + | chr4_4:64132304-64132323 | Msa0694770:CDS | 35.0% | |
| TCTGTTAAGCATAAGCAATC+AGG | + | chr4_4:64132454-64132473 | Msa0694770:three_prime_UTR | 35.0% | |
| CTGTTAAGCATAAGCAATCA+GGG | + | chr4_4:64132455-64132474 | Msa0694770:three_prime_UTR | 35.0% | |
| TGTTAAGCATAAGCAATCAG+GGG | + | chr4_4:64132456-64132475 | Msa0694770:three_prime_UTR | 35.0% | |
| GTGTGTGAAAAGTCCTTTAA+AGG | + | chr4_4:64132613-64132632 | Msa0694770:three_prime_UTR | 35.0% | |
| GCCATCAAAATTGCCTTTAA+AGG | - | chr4_4:64132629-64132648 | None:intergenic | 35.0% | |
| ! | TTTGTTGCTTGTAGCTTCAT+TGG | + | chr4_4:64132722-64132741 | Msa0694770:three_prime_UTR | 35.0% |
| TTCATTGGAATAGGCTACAT+TGG | + | chr4_4:64132737-64132756 | Msa0694770:three_prime_UTR | 35.0% | |
| ATCGAATCCGAATCCAACAA+TGG | + | chr4_4:64129611-64129630 | Msa0694770:exon | 40.0% | |
| AGGATGTTTGAGTAGGGAAA+GGG | - | chr4_4:64129650-64129669 | None:intergenic | 40.0% | |
| GAGAAAGAGGATGTTTGAGT+AGG | - | chr4_4:64129657-64129676 | None:intergenic | 40.0% | |
| ! | ATTTGAGACTGGCCATTTGA+GGG | - | chr4_4:64129683-64129702 | None:intergenic | 40.0% |
| ! | GAATTTGGGAGATTTGAGAC+TGG | - | chr4_4:64129694-64129713 | None:intergenic | 40.0% |
| GTGGAAGCCATAACGAATTT+GGG | - | chr4_4:64129708-64129727 | None:intergenic | 40.0% | |
| !! | TTACTGACTTGGAACCAGAA+CGG | - | chr4_4:64129734-64129753 | None:intergenic | 40.0% |
| GGGTAAGGGATCTGAAAAAA+GGG | - | chr4_4:64129758-64129777 | None:intergenic | 40.0% | |
| AATTGAAAAAGGGGGGGTAA+GGG | - | chr4_4:64129772-64129791 | None:intergenic | 40.0% | |
| ACGATGAATTGAAAAAGGGG+GGG | - | chr4_4:64129778-64129797 | None:intergenic | 40.0% | |
| CACGATGAATTGAAAAAGGG+GGG | - | chr4_4:64129779-64129798 | None:intergenic | 40.0% | |
| GCACGATGAATTGAAAAAGG+GGG | - | chr4_4:64129780-64129799 | None:intergenic | 40.0% | |
| !! | TGGTTTGGTGAAATGATGGT+TGG | + | chr4_4:64129901-64129920 | Msa0694770:intron | 40.0% |
| !! | GGTTTGGTGAAATGATGGTT+GGG | + | chr4_4:64129902-64129921 | Msa0694770:intron | 40.0% |
| ! | GTTTGGTGAAATGATGGTTG+GGG | + | chr4_4:64129903-64129922 | Msa0694770:intron | 40.0% |
| !! | GGATTTTCAGGATGCTTGTT+TGG | + | chr4_4:64129986-64130005 | Msa0694770:intron | 40.0% |
| GGTATAAACGCATATTCCCT+AGG | + | chr4_4:64130256-64130275 | Msa0694770:intron | 40.0% | |
| ATAAACGCATATTCCCTAGG+CGG | + | chr4_4:64130259-64130278 | Msa0694770:intron | 40.0% | |
| CACGGAGATTCATGTTGAAT+AGG | - | chr4_4:64130326-64130345 | None:intergenic | 40.0% | |
| TGGAGCTGAATACAGAGTAT+TGG | + | chr4_4:64130674-64130693 | Msa0694770:intron | 40.0% | |
| ! | AACCTATGCATTTAAGGTGG+TGG | + | chr4_4:64130723-64130742 | Msa0694770:intron | 40.0% |
| TACCACCACCTTAAATGCAT+AGG | - | chr4_4:64130728-64130747 | None:intergenic | 40.0% | |
| ACTTGAACATGCACTTCTCT+GGG | - | chr4_4:64131006-64131025 | None:intergenic | 40.0% | |
| TACTTGAACATGCACTTCTC+TGG | - | chr4_4:64131007-64131026 | None:intergenic | 40.0% | |
| ! | TTTTCAAATCGTTGGAGGGT+TGG | + | chr4_4:64131058-64131077 | Msa0694770:CDS | 40.0% |
| TTTCAAATCGTTGGAGGGTT+GGG | + | chr4_4:64131059-64131078 | Msa0694770:CDS | 40.0% | |
| ! | TGTTGTTCTGGTTGGAGATA+TGG | + | chr4_4:64131227-64131246 | Msa0694770:CDS | 40.0% |
| GTGTAGATAAAGCCAAGGTA+AGG | - | chr4_4:64131805-64131824 | None:intergenic | 40.0% | |
| TCTTTGTGTAAGCAGTCTCA+TGG | - | chr4_4:64131945-64131964 | None:intergenic | 40.0% | |
| GACTGCTTACACAAAGATAG+TGG | + | chr4_4:64131948-64131967 | Msa0694770:CDS | 40.0% | |
| CTATTGGAGATTGATCCTGA+TGG | + | chr4_4:64131976-64131995 | Msa0694770:CDS | 40.0% | |
| !! | TTGCTTTTGCTGACATGATG+AGG | + | chr4_4:64132007-64132026 | Msa0694770:CDS | 40.0% |
| TATCAAACAGGTTGTCGTCT+CGG | - | chr4_4:64132071-64132090 | None:intergenic | 40.0% | |
| CATCCAAACTTGCATTCAGT+TGG | + | chr4_4:64132292-64132311 | Msa0694770:CDS | 40.0% | |
| AATCTTCCAGCAACTCTACT+TGG | + | chr4_4:64132362-64132381 | Msa0694770:three_prime_UTR | 40.0% | |
| !!! | AAAGGCAATTTTGATGGCGA+TGG | + | chr4_4:64132631-64132650 | Msa0694770:three_prime_UTR | 40.0% |
| !!! | AAGGCAATTTTGATGGCGAT+GGG | + | chr4_4:64132632-64132651 | Msa0694770:three_prime_UTR | 40.0% |
| TTATTCTTCATTGCGGTCAC+CGG | + | chr4_4:64132668-64132687 | Msa0694770:three_prime_UTR | 40.0% | |
| TCACACCAACTCAAGTATTC+CGG | - | chr4_4:64132690-64132709 | None:intergenic | 40.0% | |
| !! | AATACTTGAGTTGGTGTGAG+TGG | + | chr4_4:64132691-64132710 | Msa0694770:three_prime_UTR | 40.0% |
| GCTTGTAGCTTCATTGGAAT+AGG | + | chr4_4:64132728-64132747 | Msa0694770:three_prime_UTR | 40.0% | |
| AGAGTATGCGTGTATGTGTG+AGG | - | chr4_4:64129522-64129541 | None:intergenic | 45.0% | |
| CTGAGAGCCATTGTTGGATT+CGG | - | chr4_4:64129621-64129640 | None:intergenic | 45.0% | |
| GGATGTTTGAGTAGGGAAAG+GGG | - | chr4_4:64129649-64129668 | None:intergenic | 45.0% | |
| GAGGATGTTTGAGTAGGGAA+AGG | - | chr4_4:64129651-64129670 | None:intergenic | 45.0% | |
| CATTTGAGGGAGAGAGAAAG+AGG | - | chr4_4:64129670-64129689 | None:intergenic | 45.0% | |
| CTCTTTCTCTCTCCCTCAAA+TGG | + | chr4_4:64129668-64129687 | Msa0694770:CDS | 45.0% | |
| ! | GATTTGAGACTGGCCATTTG+AGG | - | chr4_4:64129684-64129703 | None:intergenic | 45.0% |
| GGTGGAAGCCATAACGAATT+TGG | - | chr4_4:64129709-64129728 | None:intergenic | 45.0% | |
| GGGGTAAGGGATCTGAAAAA+AGG | - | chr4_4:64129759-64129778 | None:intergenic | 45.0% | |
| GAATTGAAAAAGGGGGGGTA+AGG | - | chr4_4:64129773-64129792 | None:intergenic | 45.0% | |
| ATTTATAGCGAAGCCGCCTA+GGG | - | chr4_4:64130275-64130294 | None:intergenic | 45.0% | |
| AATTTATAGCGAAGCCGCCT+AGG | - | chr4_4:64130276-64130295 | None:intergenic | 45.0% | |
| ! | TGTCACTTATGTGTGACTGC+AGG | + | chr4_4:64130590-64130609 | Msa0694770:intron | 45.0% |
| AATCCATCTGAGGAAGGATC+GGG | - | chr4_4:64131150-64131169 | None:intergenic | 45.0% | |
| GAATCCATCTGAGGAAGGAT+CGG | - | chr4_4:64131151-64131170 | None:intergenic | 45.0% | |
| TCTTCGAATCCATCTGAGGA+AGG | - | chr4_4:64131156-64131175 | None:intergenic | 45.0% | |
| TTGCTCTTCGAATCCATCTG+AGG | - | chr4_4:64131160-64131179 | None:intergenic | 45.0% | |
| TGGATTCGAAGAGCAAGTGA+AGG | + | chr4_4:64131164-64131183 | Msa0694770:CDS | 45.0% | |
| AAGTGAAGGAACTGAGAGAG+AGG | + | chr4_4:64131178-64131197 | Msa0694770:CDS | 45.0% | |
| AGTGAAGGAACTGAGAGAGA+GGG | + | chr4_4:64131179-64131198 | Msa0694770:CDS | 45.0% | |
| GATGGAGTTCGTGATGAAAC+AGG | + | chr4_4:64131297-64131316 | Msa0694770:CDS | 45.0% | |
| TCCAAATAGCCCAAGGAGTA+GGG | - | chr4_4:64131329-64131348 | None:intergenic | 45.0% | |
| TCCTTGGGCTATTTGGACAA+GGG | + | chr4_4:64131332-64131351 | Msa0694770:CDS | 45.0% | |
| TTGTCTCATATCAACACGGC+CGG | - | chr4_4:64131415-64131434 | None:intergenic | 45.0% | |
| ATTCAGTACCTGATTGGGTC+TGG | + | chr4_4:64131447-64131466 | Msa0694770:CDS | 45.0% | |
| TTACCATTCCAGACCCAATC+AGG | - | chr4_4:64131458-64131477 | None:intergenic | 45.0% | |
| CAGTGACACATTGATGCATC+AGG | - | chr4_4:64131606-64131625 | None:intergenic | 45.0% | |
| ACTGAGAATAGCCCTTACCT+TGG | + | chr4_4:64131790-64131809 | Msa0694770:CDS | 45.0% | |
| ! | TTGAAGTTGGCTCAGATCTG+TGG | + | chr4_4:64131895-64131914 | Msa0694770:CDS | 45.0% |
| !! | TACTTGAGTTTCTGGTTGGG+AGG | + | chr4_4:64132148-64132167 | Msa0694770:CDS | 45.0% |
| ACCTGAAAGTCCGGTTATGT+CGG | - | chr4_4:64132184-64132203 | None:intergenic | 45.0% | |
| ! | ATAACCGGACTTTCAGGTGA+GGG | + | chr4_4:64132186-64132205 | Msa0694770:CDS | 45.0% |
| ! | AAGGCACAGGAGTATGTTTG+TGG | + | chr4_4:64132213-64132232 | Msa0694770:CDS | 45.0% |
| ! | AGGCACAGGAGTATGTTTGT+GGG | + | chr4_4:64132214-64132233 | Msa0694770:CDS | 45.0% |
| ATTGCTCCAAGTAGAGTTGC+TGG | - | chr4_4:64132371-64132390 | None:intergenic | 45.0% | |
| GAAACAATCGTTCTGTTGCG+TGG | + | chr4_4:64132431-64132450 | Msa0694770:three_prime_UTR | 45.0% | |
| ! | GGACTTTTCACACACATGCA+CGG | - | chr4_4:64132608-64132627 | None:intergenic | 45.0% |
| !! | ATAAAAAAAATAAAAAAAAG+TGG | - | chr4_4:64130102-64130121 | None:intergenic | 5.0% |
| GCAGGAATGGACAATGGGAA+GGG | - | chr4_4:64129494-64129513 | None:intergenic | 50.0% | |
| CAGAGGCAGGAATGGACAAT+GGG | - | chr4_4:64129499-64129518 | None:intergenic | 50.0% | |
| !! | GTTGCTCTGAGAGCCATTGT+TGG | - | chr4_4:64129627-64129646 | None:intergenic | 50.0% |
| ! | TGACTTGGAACCAGAACGGA+GGG | - | chr4_4:64129730-64129749 | None:intergenic | 50.0% |
| TGGTGAAATGATGGTTGGGG+TGG | + | chr4_4:64129906-64129925 | Msa0694770:intron | 50.0% | |
| TGAACATGCACTTCTCTGGG+AGG | - | chr4_4:64131003-64131022 | None:intergenic | 50.0% | |
| GGTTGCCAACACTTCTCTAC+AGG | - | chr4_4:64131114-64131133 | None:intergenic | 50.0% | |
| !! | AGAGAAGTGTTGGCAACCAC+AGG | + | chr4_4:64131116-64131135 | Msa0694770:CDS | 50.0% |
| GTCCAAATAGCCCAAGGAGT+AGG | - | chr4_4:64131330-64131349 | None:intergenic | 50.0% | |
| CTCCTTGGGCTATTTGGACA+AGG | + | chr4_4:64131331-64131350 | Msa0694770:CDS | 50.0% | |
| GTACCTGATTGGGTCTGGAA+TGG | + | chr4_4:64131452-64131471 | Msa0694770:CDS | 50.0% | |
| TAAGGGCTATTCTCAGTCCG+AGG | - | chr4_4:64131787-64131806 | None:intergenic | 50.0% | |
| AGGGCGACCTTTATATCGCA+TGG | + | chr4_4:64131838-64131857 | Msa0694770:CDS | 50.0% | |
| TATCGCATGGAAACACAGCC+AGG | + | chr4_4:64131851-64131870 | Msa0694770:CDS | 50.0% | |
| !! | AAACACAGCCAGGCTTGCTA+AGG | + | chr4_4:64131861-64131880 | Msa0694770:CDS | 50.0% |
| CTCATGGCGTTTCTCATCAG+AGG | - | chr4_4:64131929-64131948 | None:intergenic | 50.0% | |
| CCATCATACATCAGGTGTGC+TGG | - | chr4_4:64132048-64132067 | None:intergenic | 50.0% | |
| CCAGCACACCTGATGTATGA+TGG | + | chr4_4:64132045-64132064 | Msa0694770:CDS | 50.0% | |
| AGTGTAGACTCCAATGCGCT+GGG | - | chr4_4:64132109-64132128 | None:intergenic | 50.0% | |
| CATTGGAGTCTACACTGCCA+AGG | + | chr4_4:64132113-64132132 | Msa0694770:CDS | 50.0% | |
| !! | TTGAGTTTCTGGTTGGGAGG+TGG | + | chr4_4:64132151-64132170 | Msa0694770:CDS | 50.0% |
| ! | CATAACCGGACTTTCAGGTG+AGG | + | chr4_4:64132185-64132204 | Msa0694770:CDS | 50.0% |
| ! | ACTTTCAGGTGAGGGACGAA+AGG | + | chr4_4:64132194-64132213 | Msa0694770:CDS | 50.0% |
| GGTTGCCACCAAGAATCAGA+AGG | + | chr4_4:64132235-64132254 | Msa0694770:CDS | 50.0% | |
| TCCAGCCTTCTGATTCTTGG+TGG | - | chr4_4:64132243-64132262 | None:intergenic | 50.0% | |
| ACCAAGAATCAGAAGGCTGG+AGG | + | chr4_4:64132242-64132261 | Msa0694770:CDS | 50.0% | |
| TCCTCCAGCCTTCTGATTCT+TGG | - | chr4_4:64132246-64132265 | None:intergenic | 50.0% | |
| GAGAGCTTCAGCAAGAGCAA+AGG | + | chr4_4:64132266-64132285 | Msa0694770:CDS | 50.0% | |
| GGTCACCGGAATACTTGAGT+TGG | + | chr4_4:64132682-64132701 | Msa0694770:three_prime_UTR | 50.0% | |
| GGCAGGAATGGACAATGGGA+AGG | - | chr4_4:64129495-64129514 | None:intergenic | 55.0% | |
| GCAGAGGCAGGAATGGACAA+TGG | - | chr4_4:64129500-64129519 | None:intergenic | 55.0% | |
| TGTATGTGTGAGGCAGAGGC+AGG | - | chr4_4:64129512-64129531 | None:intergenic | 55.0% | |
| TGCGTGTATGTGTGAGGCAG+AGG | - | chr4_4:64129516-64129535 | None:intergenic | 55.0% | |
| !! | CTGACTTGGAACCAGAACGG+AGG | - | chr4_4:64129731-64129750 | None:intergenic | 55.0% |
| TGGTCGTACAGTCGCGATGT+TGG | + | chr4_4:64130472-64130491 | Msa0694770:intron | 55.0% | |
| TCGTACAGTCGCGATGTTGG+TGG | + | chr4_4:64130475-64130494 | Msa0694770:intron | 55.0% | |
| ! | CTTCTGGGGAGGCATAGAGT+GGG | - | chr4_4:64131031-64131050 | None:intergenic | 55.0% |
| ! | TCTTCTGGGGAGGCATAGAG+TGG | - | chr4_4:64131032-64131051 | None:intergenic | 55.0% |
| GGATCGGGCAGAAAATCCTG+TGG | - | chr4_4:64131135-64131154 | None:intergenic | 55.0% | |
| AATAGCCCAAGGAGTAGGGC+TGG | - | chr4_4:64131325-64131344 | None:intergenic | 55.0% | |
| GCCCTACTCCTTGGGCTATT+TGG | + | chr4_4:64131325-64131344 | Msa0694770:CDS | 55.0% | |
| GCCCTTGTCCAAATAGCCCA+AGG | - | chr4_4:64131336-64131355 | None:intergenic | 55.0% | |
| GGGCTATTTGGACAAGGGCA+TGG | + | chr4_4:64131337-64131356 | Msa0694770:CDS | 55.0% | |
| ! | GGAACGCGGCGATTTGAAGT+TGG | + | chr4_4:64131882-64131901 | Msa0694770:CDS | 55.0% |
| CGTCTCGGCCATCATACATC+AGG | - | chr4_4:64132056-64132075 | None:intergenic | 55.0% | |
| CAGTGTAGACTCCAATGCGC+TGG | - | chr4_4:64132110-64132129 | None:intergenic | 55.0% | |
| !! | GTTTCTGGTTGGGAGGTGGA+AGG | + | chr4_4:64132155-64132174 | Msa0694770:CDS | 55.0% |
| TGGAAGGTGGCCGACATAAC+CGG | + | chr4_4:64132171-64132190 | Msa0694770:CDS | 55.0% | |
| GCCGACATAACCGGACTTTC+AGG | + | chr4_4:64132180-64132199 | Msa0694770:CDS | 55.0% | |
| TCGTCCCTCACCTGAAAGTC+CGG | - | chr4_4:64132193-64132212 | None:intergenic | 55.0% | |
| GCCACCAAGAATCAGAAGGC+TGG | + | chr4_4:64132239-64132258 | Msa0694770:CDS | 55.0% | |
| GTGTGAGGCAGAGGCAGGAA+TGG | - | chr4_4:64129507-64129526 | None:intergenic | 60.0% | |
| ATGGCTTCCACCCTCCGTTC+TGG | + | chr4_4:64129717-64129736 | Msa0694770:CDS | 60.0% | |
| CTTGGAACCAGAACGGAGGG+TGG | - | chr4_4:64129727-64129746 | None:intergenic | 60.0% | |
| !! | CGATGTTGGTGGCCGTCCAA+TGG | + | chr4_4:64130486-64130505 | Msa0694770:intron | 60.0% |
| ATCGTTGGAGGGTTGGGCTG+AGG | + | chr4_4:64131065-64131084 | Msa0694770:CDS | 60.0% | |
| CTGCCCGATCCTTCCTCAGA+TGG | + | chr4_4:64131144-64131163 | Msa0694770:CDS | 60.0% | |
| AGGTGCCAGCCCTACTCCTT+GGG | + | chr4_4:64131317-64131336 | Msa0694770:CDS | 60.0% | |
| !! | GCCAGGCTTGCTAAGGAACG+CGG | + | chr4_4:64131868-64131887 | Msa0694770:CDS | 60.0% |
| TCTGCTGTTGCCCAGCGCAT+TGG | + | chr4_4:64132096-64132115 | Msa0694770:CDS | 60.0% | |
| TCTGGTTGGGAGGTGGAAGG+TGG | + | chr4_4:64132158-64132177 | Msa0694770:CDS | 60.0% | |
| ! | AGGTGAGGGACGAAAGGCAC+AGG | + | chr4_4:64132200-64132219 | Msa0694770:CDS | 60.0% |
| CAGGTGCCAGCCCTACTCCT+TGG | + | chr4_4:64131316-64131335 | Msa0694770:CDS | 65.0% | |
| GCCGCGTTCCTTAGCAAGCC+TGG | - | chr4_4:64131872-64131891 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 64129486 | 64132766 | 64129486 | ID=Msa0694770;Name=Msa0694770 |
| chr4_4 | mRNA | 64129486 | 64132766 | 64129486 | ID=Msa0694770-mRNA-1;Parent=Msa0694770;Name=Msa0694770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=144|1|1|1|1|1|3|425|393 |
| chr4_4 | exon | 64129486 | 64129745 | 64129486 | ID=Msa0694770-mRNA-1:exon:18271;Parent=Msa0694770-mRNA-1 |
| chr4_4 | exon | 64130969 | 64131473 | 64130969 | ID=Msa0694770-mRNA-1:exon:18272;Parent=Msa0694770-mRNA-1 |
| chr4_4 | exon | 64131781 | 64132766 | 64131781 | ID=Msa0694770-mRNA-1:exon:18273;Parent=Msa0694770-mRNA-1 |
| chr4_4 | five_prime_UTR | 64129486 | 64129629 | 64129486 | ID=Msa0694770-mRNA-1:five_prime_utr;Parent=Msa0694770-mRNA-1 |
| chr4_4 | CDS | 64129630 | 64129745 | 64129630 | ID=Msa0694770-mRNA-1:cds;Parent=Msa0694770-mRNA-1 |
| chr4_4 | CDS | 64130969 | 64131473 | 64130969 | ID=Msa0694770-mRNA-1:cds;Parent=Msa0694770-mRNA-1 |
| chr4_4 | CDS | 64131781 | 64132341 | 64131781 | ID=Msa0694770-mRNA-1:cds;Parent=Msa0694770-mRNA-1 |
| chr4_4 | three_prime_UTR | 64132342 | 64132766 | 64132342 | ID=Msa0694770-mRNA-1:three_prime_utr;Parent=Msa0694770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
