AlfalfaGEDB | Msa0869320

M. sativa cultivar zhongmu-4 / Msa0869320

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0016787 GO:0017171 GO:0019538 GO:0019684 GO:0030091 GO:0030163 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF13365.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869320	XP_003618288.1	93.187	455	8	1	1	455	1	432	0.0	835

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869320	sp\|O22609\|DEGP1_ARATH	83.333	390	40	2	68	455	73	439	0.0	638

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869320	G7KIR6	93.187	455	8	1	1	455	1	432	0.0	835

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0869320	0.922593	8.041121e-89	-8.615850e-47
Msa0000800	Msa0869320	-0.846039	2.788673e-59	-8.615850e-47
Msa0001040	Msa0869320	0.832505	9.099238e-56	-8.615850e-47
Msa0001510	Msa0869320	0.866597	2.538032e-65	-8.615850e-47
Msa0001550	Msa0869320	0.825138	5.518762e-54	-8.615850e-47
Msa0001650	Msa0869320	0.802829	4.658119e-49	-8.615850e-47
Msa0002110	Msa0869320	0.924778	4.469917e-90	-8.615850e-47
Msa0002690	Msa0869320	0.915118	8.605868e-85	-8.615850e-47
Msa0002700	Msa0869320	0.918043	2.532441e-86	-8.615850e-47
Msa0003340	Msa0869320	0.889949	1.531709e-73	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869320	MtrunA17_Chr6g0450671	93.187	455	8	1	1	455	1	432	0.0	835
Msa0869320	MtrunA17_Chr6g0453121	47.443	352	147	7	115	452	130	457	2.33e-91	284
Msa0869320	MtrunA17_Chr2g0285791	48.387	217	90	5	115	310	90	305	2.08e-55	187
Msa0869320	MtrunA17_Chr7g0272621	28.274	336	174	11	128	441	128	418	5.96e-28	115
Msa0869320	MtrunA17_Chr1g0196111	35.526	152	89	6	161	308	13	159	2.26e-13	72.0
Msa0869320	MtrunA17_Chr6g0448981	28.213	319	177	16	147	450	106	387	7.50e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869320	AT3G27925.1	83.333	390	40	2	68	455	73	439	0.0	638
Msa0869320	AT3G27925.2	83.333	390	40	2	68	455	73	439	0.0	638
Msa0869320	AT5G39830.1	47.727	352	146	5	115	452	120	447	9.63e-91	283
Msa0869320	AT5G39830.2	44.663	356	145	4	111	452	116	433	6.22e-82	259
Msa0869320	AT4G18370.1	50.467	214	88	5	115	311	92	304	7.02e-57	191
Msa0869320	AT4G18370.2	47.126	174	76	4	115	273	92	264	6.85e-40	144
Msa0869320	AT4G18370.3	45.139	144	64	3	115	243	92	235	2.49e-30	118
Msa0869320	AT5G27660.2	29.970	337	168	10	143	451	133	429	1.39e-28	117
Msa0869320	AT5G27660.1	29.970	337	162	11	143	451	128	418	1.64e-26	111
Msa0869320	AT2G47940.1	26.893	383	203	15	103	451	86	425	4.97e-14	74.7

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Find 114 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTTGAACCATGAGC+TGG	0.562990	6_1:-3497473	Msa0869320:CDS
AAACCTCATTGGGATAAATA+CGG	0.500616	6_1:-3497689	Msa0869320:CDS
AAACCTGACCCAGATCCCTG+AGG	0.760209	6_1:+3499238	None:intergenic
AAACTTACTGCTTTCCCAGC+TGG	0.448518	6_1:+3497195	None:intergenic
AACATCTGTGAATGGTAATA+AGG	0.295684	6_1:-3496266	Msa0869320:CDS
AAGAAACTTACTTAACAGCA+AGG	0.597017	6_1:+3500536	None:intergenic
AAGATCTAAAACAGCAATAA+TGG	0.315278	6_1:-3494910	Msa0869320:three_prime_UTR
AAGATGAAGAGATTTGGGTT+TGG	0.451589	6_1:+3500846	None:intergenic
AAGCTCAGGCCAATACCTGT+TGG	0.645438	6_1:-3498140	Msa0869320:CDS
AAGGTTACTAGACCTATATT+AGG	0.456851	6_1:-3497297	Msa0869320:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATGAAGATGAAGAGATTT+GGG	+	chr6_1:3494996-3495015	None:intergenic	30.0%
AAGAAACTTACTTAACAGCA+AGG	+	chr6_1:3495301-3495320	None:intergenic	30.0%
GAATGTTGGTATTTGTGTTT+AGG	-	chr6_1:3495379-3495398	Msa0869320:exon	30.0%
TTGGTATTTGTGTTTAGGTA+GGG	-	chr6_1:3495384-3495403	Msa0869320:CDS	30.0%
ATTATCAATGACAATTCTGG+AGG	+	chr6_1:3495684-3495703	None:intergenic	30.0%
CAAGCATTAAGAAAAACAAG+AGG	+	chr6_1:3495920-3495939	None:intergenic	30.0%
CAACCTATAATCAATTCTAG+AGG	+	chr6_1:3495978-3495997	None:intergenic	30.0%
CACATTAGAATTGATTATGG+AGG	+	chr6_1:3496194-3496213	None:intergenic	30.0%
TTGGTTATATAGACAACAGA+GGG	+	chr6_1:3496332-3496351	None:intergenic	30.0%
ATATGTGTTCAATTCAGCAA+TGG	+	chr6_1:3496521-3496540	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	3494876	3500980	3494876	ID=Msa0869320;Name=Msa0869320
chr6_1	mRNA	3494876	3500980	3494876	ID=Msa0869320-mRNA-1;Parent=Msa0869320;Name=Msa0869320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=33\|0.77\|0.9\|1\|0.88\|0.8\|10\|357\|455
chr6_1	exon	3494876	3494980	3494876	ID=Msa0869320-mRNA-1:exon:1064;Parent=Msa0869320-mRNA-1
chr6_1	exon	3495128	3495457	3495128	ID=Msa0869320-mRNA-1:exon:1063;Parent=Msa0869320-mRNA-1
chr6_1	exon	3496210	3496344	3496210	ID=Msa0869320-mRNA-1:exon:1062;Parent=Msa0869320-mRNA-1
chr6_1	exon	3497203	3497355	3497203	ID=Msa0869320-mRNA-1:exon:1061;Parent=Msa0869320-mRNA-1
chr6_1	exon	3497450	3497518	3497450	ID=Msa0869320-mRNA-1:exon:1060;Parent=Msa0869320-mRNA-1
chr6_1	exon	3497630	3497828	3497630	ID=Msa0869320-mRNA-1:exon:1059;Parent=Msa0869320-mRNA-1
chr6_1	exon	3497926	3497963	3497926	ID=Msa0869320-mRNA-1:exon:1058;Parent=Msa0869320-mRNA-1
chr6_1	exon	3498088	3498259	3498088	ID=Msa0869320-mRNA-1:exon:1057;Parent=Msa0869320-mRNA-1
chr6_1	exon	3499172	3499294	3499172	ID=Msa0869320-mRNA-1:exon:1056;Parent=Msa0869320-mRNA-1
chr6_1	exon	3500547	3500980	3500547	ID=Msa0869320-mRNA-1:exon:1055;Parent=Msa0869320-mRNA-1
chr6_1	five_prime_UTR	3500948	3500980	3500948	ID=Msa0869320-mRNA-1:five_prime_utr;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3500547	3500947	3500547	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3499172	3499294	3499172	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3498088	3498259	3498088	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3497926	3497963	3497926	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3497630	3497828	3497630	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3497450	3497518	3497450	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3497203	3497355	3497203	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3496210	3496344	3496210	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	CDS	3495380	3495457	3495380	ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1	three_prime_UTR	3495128	3495379	3495128	ID=Msa0869320-mRNA-1:three_prime_utr;Parent=Msa0869320-mRNA-1
chr6_1	three_prime_UTR	3494876	3494980	3494876	ID=Msa0869320-mRNA-1:three_prime_utr;Parent=Msa0869320-mRNA-1

Gene Sequence

>Msa0869320

ATGGCCATAGCTTCTTCTTCCTCTTCACTCATTTCCACATTCTTCTTCAACTCTTCCTCATTCCCTCGCTCTTCAATCACCAAACCCAAATCTCTTCATCTTCATCACACACCAACTCACTTACTTTCTCACCCCACCCTTTTCCTCCTACACCCCCCTTCATCATCAAAACCACCACTTTCACTTCCAAAACTCACTATACCAAAAACATGCTTTGATTCTGTACTCATTCTATGTACTTCACTTGCACTATCTTTGACTCTCTTCATTTCAAATGTTGATTCAGCTTCTGCTTTTGTTGTAAATGCTCCTAGGAAGCTGCAGTCTGATGAACTTGCTACTGTTCGTTTGTTTCAAGAGAATACTCCTTCTGTTGTTTATATAACTAACCTTGCTGTTAAGCAGGATGCGTTTACTTTGGATGTGTTGGAGGTTCCTCAGGGATCTGGGTCAGGTTTCGTTTGGGATAAGGATGGTCATATAGTCACCAATTATCATGTTATCAGGGGTGCTTCGGATCTCAGGGTCACTCTTGCTGACCAATCAACCTACGATGCAAAAGTTGTTGGTTTTGACCAAGACAAGGATGTTGCTGTGCTGCGTGTTGACGCGCCTAAAGACAAGCTCAGGCCAATACCTGTTGGTGTCTCTGCTGACTTGCTTGTTGGTCAGAAAGTGTTTGCTATTGGGAACCCGTTTGGACTAGATCACACGCTTACAACTGGAGTTATCAGTGGACTTCGGCGAGAAATTAGTTCGGCTGCAACTGGTCGTCCTATCCAAGATGTTATACAGACTGATGCAGCAATTAATCCTGGTAACAGCGGAGGGCCACTCCTAGATAGTTCTGGAAACCTCATTGGGATAAATACGGCTATATACTCTCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCTGTCGATACTTTTCATCCCAATTTGAGCGCTTTAAAACAGTTGAACCATGAGCTGGTGGTCTTGCTGGTTCGTCGTCCGGTCAATGGCATTGTTGATCAATTGGTGAAGTTTGGGAAGGTTACTAGACCTATATTAGGAATCAAGTTTGCTCCAGATCAATCTGTGGAGCAATTGGGAGTAAGTGGAGTGCTTGTCTTGGATGCTCCTGCCACTGGTCCAGCTGGGAAAGCAGGCTTACAATCAACAAAGCGTGATTCCTATGGTAGACTCATTTTAGGTGACATCATAACATCTGTGAATGGTAATAAGGTTTCTAATGGAAGTGATTTGTACAGAATTCTTGACCAATGTAAAGTTGGTGATAAGGTGATTGTGGAAGTGTTGCGAGGAGACCACAAAGAAAAGATCCCCGTCATTCTCGAGCCGAAGGCCGACGAAACATGA

Protein sequence

>Msa0869320

MAIASSSSSLISTFFFNSSSFPRSSITKPKSLHLHHTPTHLLSHPTLFLLHPPSSSKPPLSLPKLTIPKTCFDSVLILCTSLALSLTLFISNVDSASAFVVNAPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQSTYDAKVVGFDQDKDVAVLRVDAPKDKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTFHPNLSALKQLNHELVVLLVRRPVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPATGPAGKAGLQSTKRDSYGRLILGDIITSVNGNKVSNGSDLYRILDQCKVGDKVIVEVLRGDHKEKIPVILEPKADET*