AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0869320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869320 MtrunA17_Chr6g0450671 93.187 455 8 1 1 455 1 432 0.0 835
Msa0869320 MtrunA17_Chr6g0453121 47.443 352 147 7 115 452 130 457 2.33e-91 284
Msa0869320 MtrunA17_Chr2g0285791 48.387 217 90 5 115 310 90 305 2.08e-55 187
Msa0869320 MtrunA17_Chr7g0272621 28.274 336 174 11 128 441 128 418 5.96e-28 115
Msa0869320 MtrunA17_Chr1g0196111 35.526 152 89 6 161 308 13 159 2.26e-13 72.0
Msa0869320 MtrunA17_Chr6g0448981 28.213 319 177 16 147 450 106 387 7.50e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0869320 AT3G27925.1 83.333 390 40 2 68 455 73 439 0.0 638
Msa0869320 AT3G27925.2 83.333 390 40 2 68 455 73 439 0.0 638
Msa0869320 AT5G39830.1 47.727 352 146 5 115 452 120 447 9.63e-91 283
Msa0869320 AT5G39830.2 44.663 356 145 4 111 452 116 433 6.22e-82 259
Msa0869320 AT4G18370.1 50.467 214 88 5 115 311 92 304 7.02e-57 191
Msa0869320 AT4G18370.2 47.126 174 76 4 115 273 92 264 6.85e-40 144
Msa0869320 AT4G18370.3 45.139 144 64 3 115 243 92 235 2.49e-30 118
Msa0869320 AT5G27660.2 29.970 337 168 10 143 451 133 429 1.39e-28 117
Msa0869320 AT5G27660.1 29.970 337 162 11 143 451 128 418 1.64e-26 111
Msa0869320 AT2G47940.1 26.893 383 203 15 103 451 86 425 4.97e-14 74.7
Msa0869320 AT2G47940.2 26.893 383 203 15 103 451 85 424 5.33e-14 74.7

Find 114 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGGTTCCTCAGGGATC+TGG 0.232760 6_1:-3499247 Msa0869320:CDS
TCACCAATTATCATGTTATC+AGG 0.249166 6_1:-3499189 Msa0869320:CDS
CCATGAGCTGGTGGTCTTGC+TGG 0.249274 6_1:-3497461 Msa0869320:CDS
TAGTATCAATTAGATTTATT+TGG 0.253150 6_1:-3494874 None:intergenic
ACCCCTGATAACATGATAAT+TGG 0.283190 6_1:+3499186 None:intergenic
AACATCTGTGAATGGTAATA+AGG 0.295684 6_1:-3496266 Msa0869320:CDS
GTTGATCAATTGGTGAAGTT+TGG 0.310545 6_1:-3497321 Msa0869320:CDS
GCTCCTGCCACTGGTCCAGC+TGG 0.312294 6_1:-3497210 Msa0869320:CDS
AAGATCTAAAACAGCAATAA+TGG 0.315278 6_1:-3494910 Msa0869320:three_prime_UTR
AGCTGTTTATGTGTATTCTA+AGG 0.332636 6_1:-3495298 Msa0869320:three_prime_UTR
GTCAGAAAGTGTTTGCTATT+GGG 0.343361 6_1:-3498094 Msa0869320:CDS
CGCTTACAACTGGAGTTATC+AGG 0.345355 6_1:-3497925 Msa0869320:intron
ATCTGGGTCAGGTTTCGTTT+GGG 0.345654 6_1:-3499230 Msa0869320:CDS
AGATCAATCTGTGGAGCAAT+TGG 0.346124 6_1:-3497259 Msa0869320:CDS
GTGATGAAGATGAAGAGATT+TGG 0.348289 6_1:+3500840 None:intergenic
GTCTCTGCTGACTTGCTTGT+TGG 0.352804 6_1:-3498116 Msa0869320:CDS
GTTCCTCAGGGATCTGGGTC+AGG 0.354730 6_1:-3499241 Msa0869320:CDS
GGATGTGTTGGAGGTTCCTC+AGG 0.362434 6_1:-3499254 Msa0869320:CDS
TGATGAAGATGAAGAGATTT+GGG 0.367680 6_1:+3500841 None:intergenic
ATTGGCCTGAGCTTGTCTTT+AGG 0.367903 6_1:+3498149 None:intergenic
GTCAGGTTTCGTTTGGGATA+AGG 0.380706 6_1:-3499224 Msa0869320:CDS
GATCTGGGTCAGGTTTCGTT+TGG 0.381779 6_1:-3499231 Msa0869320:CDS
GGGCCACTCCTAGATAGTTC+TGG 0.384530 6_1:-3497712 Msa0869320:CDS
GAAATTAGTTCGGCTGCAAC+TGG 0.387158 6_1:-3497793 Msa0869320:CDS
GCAAACTTGATTCCTAATAT+AGG 0.388647 6_1:+3497285 None:intergenic
GGTCTTGCTGGTTCGTCGTC+CGG 0.407010 6_1:-3497449 Msa0869320:intron
AATGGTAATAAGGTTTCTAA+TGG 0.407424 6_1:-3496256 Msa0869320:CDS
GATAGTTCTGGAAACCTCAT+TGG 0.407887 6_1:-3497700 Msa0869320:CDS
ACCTACGATGCAAAAGTTGT+TGG 0.408508 6_1:-3498215 Msa0869320:CDS
GGTCAGAAAGTGTTTGCTAT+TGG 0.408657 6_1:-3498095 Msa0869320:CDS
GTCTTGGATGCTCCTGCCAC+TGG 0.408824 6_1:-3497219 Msa0869320:CDS
TCATCAGACTGCAGCTTCCT+AGG 0.412956 6_1:+3500616 None:intergenic
CTAGATCACACGCTTACAAC+TGG 0.413765 6_1:-3497935 Msa0869320:CDS
CATCATGTTTCGTCGGCCTT+CGG 0.417029 6_1:+3495378 None:intergenic
TTCCCAGCTGGACCAGTGGC+AGG 0.417611 6_1:+3497207 None:intergenic
TTGATCAATTGGTGAAGTTT+GGG 0.427297 6_1:-3497320 Msa0869320:CDS
TAGTATATATCTACACTGTT+TGG 0.430778 6_1:+3495269 None:intergenic
TCTCCATCTGGTGCATCCTC+TGG 0.434161 6_1:-3497658 Msa0869320:CDS
TCAGGGGTGCTTCGGATCTC+AGG 0.437066 6_1:-3499171 Msa0869320:intron
TGAGGTTTCCAGAACTATCT+AGG 0.437219 6_1:+3497704 None:intergenic
GCCTTCGGCTCGAGAATGAC+GGG 0.437571 6_1:+3495393 None:intergenic
CAATGGCATTGTTGATCAAT+TGG 0.442333 6_1:-3497331 Msa0869320:CDS
TCATGTTATCAGGGGTGCTT+CGG 0.445830 6_1:-3499179 Msa0869320:CDS
AAACTTACTGCTTTCCCAGC+TGG 0.448518 6_1:+3497195 None:intergenic
CATCAGTCTGTATAACATCT+TGG 0.450735 6_1:+3497761 None:intergenic
AAGATGAAGAGATTTGGGTT+TGG 0.451589 6_1:+3500846 None:intergenic
TGGAGGTTCCTCAGGGATCT+GGG 0.453594 6_1:-3499246 Msa0869320:CDS
GATTGAAGAGCGAGGGAATG+AGG 0.454350 6_1:+3500870 None:intergenic
GGGGTGTAGGAGGAAAAGGG+TGG 0.455201 6_1:+3500792 None:intergenic
AAGGTTACTAGACCTATATT+AGG 0.456851 6_1:-3497297 Msa0869320:CDS
TGCGTTTACTTTGGATGTGT+TGG 0.458605 6_1:-3499266 Msa0869320:CDS
TCTGGTGCATCCTCTGGTGT+TGG 0.464380 6_1:-3497652 Msa0869320:CDS
GGTGTAGGAGGAAAAGGGTG+GGG 0.464956 6_1:+3500794 None:intergenic
AATAGATTCATTCACTTACA+TGG 0.465202 6_1:-3495147 Msa0869320:three_prime_UTR
ATTCTTGACCAATGTAAAGT+TGG 0.472847 6_1:-3496217 Msa0869320:CDS
CACCAATTATCATGTTATCA+GGG 0.476557 6_1:-3499188 Msa0869320:CDS
TGAAGAGGAAGAAGAAGCTA+TGG 0.476692 6_1:+3500921 None:intergenic
CCAATGTAAAGTTGGTGATA+AGG 0.479540 6_1:-3496209 Msa0869320:intron
TAGGCAGGATGCGTTTACTT+TGG 0.485183 6_1:-3499275 Msa0869320:CDS
GCAGAGACACCAACAGGTAT+TGG 0.491987 6_1:+3498131 None:intergenic
AATTGCTCCACAGATTGATC+TGG 0.493425 6_1:+3497261 None:intergenic
AAACCTCATTGGGATAAATA+CGG 0.500616 6_1:-3497689 Msa0869320:CDS
AGTGGCCCTCCGCTGTTACC+AGG 0.502512 6_1:+3497727 None:intergenic
ATAGTTCTGGAAACCTCATT+GGG 0.505914 6_1:-3497699 Msa0869320:CDS
GTGGAGCAATTGGGAGTAAG+TGG 0.506145 6_1:-3497249 Msa0869320:CDS
ACAGTGTAGATATATACTAT+AGG 0.506202 6_1:-3495265 Msa0869320:three_prime_UTR
GATCAATCTGTGGAGCAATT+GGG 0.509374 6_1:-3497258 Msa0869320:CDS
ACGGCTATATACTCTCCATC+TGG 0.514727 6_1:-3497670 Msa0869320:CDS
AAGTCAGCAGAGACACCAAC+AGG 0.516720 6_1:+3498125 None:intergenic
TGCTTTCCCAGCTGGACCAG+TGG 0.520522 6_1:+3497203 None:intergenic
GGCCTTCGGCTCGAGAATGA+CGG 0.522075 6_1:+3495392 None:intergenic
AGTAAGTGGAGTGCTTGTCT+TGG 0.523157 6_1:-3497235 Msa0869320:CDS
TGTTGATATTCAGGTGATTG+TGG 0.527659 6_1:-3495448 Msa0869320:intron
TCAACAAAGCGTGATTCCTA+TGG 0.532445 6_1:-3496313 Msa0869320:CDS
GCACAGCAACATCCTTGTCT+TGG 0.543843 6_1:+3498186 None:intergenic
CCTTATCACCAACTTTACAT+TGG 0.546658 6_1:+3496209 None:intergenic
GTTTACTTTGGATGTGTTGG+AGG 0.547964 6_1:-3499263 Msa0869320:CDS
GACATCATAACATCTGTGAA+TGG 0.547970 6_1:-3496274 Msa0869320:CDS
GAATGTGGAAATGAGTGAAG+AGG 0.548178 6_1:+3500906 None:intergenic
GGGTGTAGGAGGAAAAGGGT+GGG 0.555938 6_1:+3500793 None:intergenic
CTCCTGCCACTGGTCCAGCT+GGG 0.560697 6_1:-3497209 Msa0869320:CDS
AAAACAGTTGAACCATGAGC+TGG 0.562990 6_1:-3497473 Msa0869320:CDS
TCAGAGCTCACAGTATCGAC+AGG 0.563331 6_1:+3497619 None:intergenic
ACTGATGCAGCAATTAATCC+TGG 0.563387 6_1:-3497745 Msa0869320:CDS
GATGTGTTGGAGGTTCCTCA+GGG 0.571176 6_1:-3499253 Msa0869320:CDS
GGAAGAGTTGAAGAAGAATG+TGG 0.571372 6_1:+3500891 None:intergenic
TAGCCGTATTTATCCCAATG+AGG 0.585080 6_1:+3497686 None:intergenic
TCAATTGGTGAAGTTTGGGA+AGG 0.586725 6_1:-3497316 Msa0869320:CDS
GTTTGGTGATTGAAGAGCGA+GGG 0.590006 6_1:+3500863 None:intergenic
AGTGTTTGCTATTGGGAACC+CGG 0.591432 6_1:-3498087 Msa0869320:intron
TTTCTCAAAATAGTGGACTT+CGG 0.593026 6_1:-3497819 Msa0869320:intron
ACACCAGAGGATGCACCAGA+TGG 0.595755 6_1:+3497655 None:intergenic
AAGAAACTTACTTAACAGCA+AGG 0.597017 6_1:+3500536 None:intergenic
TTAGTTATATAAACAACAGA+AGG 0.597978 6_1:+3500559 None:intergenic
ACTTCGGCGAGAAATTAGTT+CGG 0.598072 6_1:-3497803 Msa0869320:CDS
CCAGCAAGACCACCAGCTCA+TGG 0.598120 6_1:+3497461 None:intergenic
AGTTGCACATCATGTTTCGT+CGG 0.599114 6_1:+3495371 None:intergenic
ATTAATCCTGGTAACAGCGG+AGG 0.605722 6_1:-3497733 Msa0869320:CDS
TTAATCCTGGTAACAGCGGA+GGG 0.614211 6_1:-3497732 Msa0869320:CDS
GGTTTCGTTTGGGATAAGGA+TGG 0.615453 6_1:-3499220 Msa0869320:CDS
ACCAATTATCATGTTATCAG+GGG 0.625604 6_1:-3499187 Msa0869320:CDS
GTCTGTATAACATCTTGGAT+AGG 0.626706 6_1:+3497766 None:intergenic
GGTTTGGTGATTGAAGAGCG+AGG 0.630629 6_1:+3500862 None:intergenic
ACCTAAAATGAGTCTACCAT+AGG 0.641419 6_1:+3496297 None:intergenic
AAGCTCAGGCCAATACCTGT+TGG 0.645438 6_1:-3498140 Msa0869320:CDS
CCTTCGGCTCGAGAATGACG+GGG 0.652759 6_1:+3495394 None:intergenic
ACAGTTGAACCATGAGCTGG+TGG 0.661374 6_1:-3497470 Msa0869320:CDS
GGGTGAGAAAGTAAGTGAGT+TGG 0.670662 6_1:+3500814 None:intergenic
AATAGAAAATCCAACACCAG+AGG 0.677123 6_1:+3497642 None:intergenic
TTTCCAGAACTATCTAGGAG+TGG 0.677655 6_1:+3497709 None:intergenic
GCAATTAATCCTGGTAACAG+CGG 0.687109 6_1:-3497736 Msa0869320:CDS
GTTTGCTCCAGATCAATCTG+TGG 0.693801 6_1:-3497268 Msa0869320:CDS
GTGATTGTGGAAGTGTTGCG+AGG 0.723938 6_1:-3495435 Msa0869320:CDS
AAACCTGACCCAGATCCCTG+AGG 0.760209 6_1:+3499238 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTTTATATATTT+AGG - chr6_1:3498479-3498498 Msa0869320:intron 0.0%
!! ATAAAAATAGGAATTATAAT+AGG + chr6_1:3499227-3499246 None:intergenic 10.0%
!!! TATTATAATTCCTATTTTTA+TGG - chr6_1:3499226-3499245 Msa0869320:CDS 10.0%
!!! TGTTAATTTGAATATAAATA+TGG - chr6_1:3499701-3499720 Msa0869320:intron 10.0%
!! TATAACAAAAATCATAAAAA+TGG + chr6_1:3499927-3499946 None:intergenic 10.0%
!!! CAATTTTACTAAATCAATTT+TGG + chr6_1:3495582-3495601 None:intergenic 15.0%
!!! TGAAGATTTAAAATTGATTT+TGG - chr6_1:3495624-3495643 Msa0869320:intron 15.0%
!!! TTTTAGTAAAAGTAAGATTA+AGG + chr6_1:3495804-3495823 None:intergenic 15.0%
!! AAAAAATAAACGATTTACTT+TGG - chr6_1:3496136-3496155 Msa0869320:intron 15.0%
!!! AAAATTGATTTTGTTATGTT+TGG - chr6_1:3496299-3496318 Msa0869320:CDS 15.0%
!!! ACTATTTTTATAAGCTATTA+TGG - chr6_1:3496878-3496897 Msa0869320:intron 15.0%
!!! CTATTTTTATAAGCTATTAT+GGG - chr6_1:3496879-3496898 Msa0869320:intron 15.0%
!!! TATTTTTATAAGCTATTATG+GGG - chr6_1:3496880-3496899 Msa0869320:intron 15.0%
!! TAAACTTAAAATCAAGAAAT+TGG - chr6_1:3497083-3497102 Msa0869320:intron 15.0%
!!! ATTTTATATATTTAGGTCAA+TGG - chr6_1:3498486-3498505 Msa0869320:intron 15.0%
!! AAATTTATTCTTATAGAGTT+AGG - chr6_1:3498695-3498714 Msa0869320:intron 15.0%
!!! TTTGATTACAAATTTTTCAA+GGG - chr6_1:3499437-3499456 Msa0869320:intron 15.0%
!!! TTATGATTTTTGTTATATCT+CGG - chr6_1:3499930-3499949 Msa0869320:intron 15.0%
!! AAACATTAAATAAAGTTCAA+CGG - chr6_1:3500116-3500135 Msa0869320:intron 15.0%
!! AAATAAGATGAAAATATGTA+TGG - chr6_1:3500191-3500210 Msa0869320:intron 15.0%
!!! TCTATTTTCTTTAACTTTTT+GGG + chr6_1:3500299-3500318 None:intergenic 15.0%
!!! TTCTATTTTCTTTAACTTTT+TGG + chr6_1:3500300-3500319 None:intergenic 15.0%
!! TTAGTTATATAAACAACAGA+AGG + chr6_1:3495278-3495297 None:intergenic 20.0%
!! AACATTCATAAAAACCAAAA+GGG + chr6_1:3495366-3495385 None:intergenic 20.0%
!! CTTTCTTAATAGTTACAAAA+GGG + chr6_1:3495439-3495458 None:intergenic 20.0%
!! TCTTTCTTAATAGTTACAAA+AGG + chr6_1:3495440-3495459 None:intergenic 20.0%
!! AGATTTAGAGATTAATGATT+TGG - chr6_1:3495457-3495476 Msa0869320:intron 20.0%
!!! GATTTAGTAAAATTGATTCT+AGG - chr6_1:3495587-3495606 Msa0869320:intron 20.0%
!!! AAAATTGATTTTGGTATGTT+TGG - chr6_1:3495633-3495652 Msa0869320:intron 20.0%
!! AAGGTAAAATGATTTACTTT+GGG + chr6_1:3495785-3495804 None:intergenic 20.0%
!! TAAGGTAAAATGATTTACTT+TGG + chr6_1:3495786-3495805 None:intergenic 20.0%
!!! CAATTGTACTAAATCAATTT+TGG + chr6_1:3495949-3495968 None:intergenic 20.0%
!!! TGATTTTGTAACATTTATTC+TGG - chr6_1:3496052-3496071 Msa0869320:intron 20.0%
!! AAACACATTAGAATTGATTA+TGG + chr6_1:3496197-3496216 None:intergenic 20.0%
!!! GATTTTGAATAAATTGATTC+AGG + chr6_1:3496491-3496510 None:intergenic 20.0%
!! AATTAATCAAACAACTTATC+AGG - chr6_1:3496756-3496775 Msa0869320:intron 20.0%
!! ATTAATCAAACAACTTATCA+GGG - chr6_1:3496757-3496776 Msa0869320:intron 20.0%
!! ATGATAAAAACTTATGCTAT+AGG + chr6_1:3496833-3496852 None:intergenic 20.0%
!! ATTATAACTTACAAGTACTT+AGG + chr6_1:3497027-3497046 None:intergenic 20.0%
!!! CAAGAAATTGGTTATTTTAT+TGG - chr6_1:3497095-3497114 Msa0869320:intron 20.0%
!! TATCAGTGCATTAAATTAAA+TGG + chr6_1:3497129-3497148 None:intergenic 20.0%
!! TTAGGCAATATTATAGATTA+AGG + chr6_1:3497192-3497211 None:intergenic 20.0%
!! ATAATATTGCCTAAAACAAA+AGG - chr6_1:3497198-3497217 Msa0869320:intron 20.0%
!!! ATATGATTTGGAAATATTAC+CGG + chr6_1:3497769-3497788 None:intergenic 20.0%
!! GTAATATTTCCAAATCATAT+TGG - chr6_1:3497769-3497788 Msa0869320:CDS 20.0%
!!! ATTATTTGATTTTTGCAGTT+TGG - chr6_1:3497875-3497894 Msa0869320:intron 20.0%
!!! AAAAAATTGACTCTTTTCTT+AGG + chr6_1:3497983-3498002 None:intergenic 20.0%
!! TAAAACATTTGTATAAAGAG+AGG + chr6_1:3498247-3498266 None:intergenic 20.0%
!!! AAATGTTTTAAAAACTGAAC+CGG - chr6_1:3498257-3498276 Msa0869320:intron 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG - chr6_1:3499108-3499127 Msa0869320:intron 20.0%
!!! AAAAATTTTCCCAAAGAAAA+GGG - chr6_1:3499154-3499173 Msa0869320:intron 20.0%
!! CTTAACATTATAATATTCCT+GGG + chr6_1:3499254-3499273 None:intergenic 20.0%
!! ATTATTCCTAGGAATAAATT+TGG - chr6_1:3499333-3499352 Msa0869320:intron 20.0%
!!! GTTTGATTACAAATTTTTCA+AGG - chr6_1:3499436-3499455 Msa0869320:intron 20.0%
!! TTTCTATTCTATTATGTTGT+AGG - chr6_1:3499490-3499509 Msa0869320:intron 20.0%
!! TTCTATTCTATTATGTTGTA+GGG - chr6_1:3499491-3499510 Msa0869320:intron 20.0%
!!! TATGATTTTTGTTATATCTC+GGG - chr6_1:3499931-3499950 Msa0869320:intron 20.0%
!!! ATTTTAGTTTGAGTTTCTAA+GGG + chr6_1:3500329-3500348 None:intergenic 20.0%
!!! AATTTTAGTTTGAGTTTCTA+AGG + chr6_1:3500330-3500349 None:intergenic 20.0%
!!! TAAGCAAGAATCAATTTTTT+AGG - chr6_1:3500748-3500767 Msa0869320:CDS 20.0%
!! CATTCAATAAATGATGTATT+TGG + chr6_1:3500812-3500831 None:intergenic 20.0%
!!! CTTTTGTTTATAATAGTGAT+CGG - chr6_1:3500847-3500866 Msa0869320:CDS 20.0%
! CAACATTCATAAAAACCAAA+AGG + chr6_1:3495367-3495386 None:intergenic 25.0%
!!! CTTTTGGTTTTTATGAATGT+TGG - chr6_1:3495365-3495384 Msa0869320:exon 25.0%
! CAAATTTATCTCACTAAGTA+GGG + chr6_1:3495538-3495557 None:intergenic 25.0%
! TCAAATTTATCTCACTAAGT+AGG + chr6_1:3495539-3495558 None:intergenic 25.0%
!! TTTGATTGTTGTTGTATGTT+TGG - chr6_1:3495554-3495573 Msa0869320:intron 25.0%
! AGTATTATCAATGACAATTC+TGG + chr6_1:3495687-3495706 None:intergenic 25.0%
! AAGCATTAAGAAAAACAAGA+GGG + chr6_1:3495919-3495938 None:intergenic 25.0%
!!! TTGTTTTTCTTAATGCTTGT+TGG - chr6_1:3495921-3495940 Msa0869320:intron 25.0%
! AAGGTAAAGTGATTTATGTT+AGG - chr6_1:3496090-3496109 Msa0869320:intron 25.0%
! AACATGTCAAAAATCAAATG+TGG + chr6_1:3496224-3496243 None:intergenic 25.0%
!!! GAATTTTTAGATTACCCTTT+TGG - chr6_1:3496396-3496415 Msa0869320:intron 25.0%
!! TTGATTCTTTTGATCGAAAA+AGG - chr6_1:3496453-3496472 Msa0869320:intron 25.0%
! TTTAATGTGTGTATGTGTTT+AGG - chr6_1:3496540-3496559 Msa0869320:intron 25.0%
!!! ACTTAAATTTGCTATGTATC+TGG - chr6_1:3496722-3496741 Msa0869320:intron 25.0%
!!! CTTAAATTTGCTATGTATCT+GGG - chr6_1:3496723-3496742 Msa0869320:intron 25.0%
! TTAATCAAACAACTTATCAG+GGG - chr6_1:3496758-3496777 Msa0869320:intron 25.0%
! GACTTATTTGAACTTAACTA+TGG + chr6_1:3496980-3496999 None:intergenic 25.0%
!!! TATCATCTTCCTTTTGTTTT+AGG + chr6_1:3497210-3497229 None:intergenic 25.0%
!!! ATCTATCTACTGTCTTTTTT+TGG + chr6_1:3497424-3497443 None:intergenic 25.0%
!! TATGATTTGGAAATATTACC+GGG + chr6_1:3497768-3497787 None:intergenic 25.0%
! ATATTTCCAAATCATATTGG+TGG - chr6_1:3497772-3497791 Msa0869320:CDS 25.0%
! TATTCTCTATGAAATTTCCA+TGG - chr6_1:3497814-3497833 Msa0869320:intron 25.0%
! ATACATGTTTCTCAAAATAG+TGG - chr6_1:3498008-3498027 Msa0869320:intron 25.0%
! TTCAAGAGAATAAAGAAAGA+CGG + chr6_1:3498452-3498471 None:intergenic 25.0%
! AATCAAGCACTATTCATATA+AGG - chr6_1:3498739-3498758 Msa0869320:intron 25.0%
! ATCAAGCACTATTCATATAA+GGG - chr6_1:3498740-3498759 Msa0869320:intron 25.0%
! GAAAACAGCTTATATCAAAA+CGG + chr6_1:3498812-3498831 None:intergenic 25.0%
! ACTCATTCTTATATAAGCTA+AGG - chr6_1:3499009-3499028 Msa0869320:intron 25.0%
! CTCATTCTTATATAAGCTAA+GGG - chr6_1:3499010-3499029 Msa0869320:intron 25.0%
! AGTAAACTTGTAACAAACAT+AGG + chr6_1:3499096-3499115 None:intergenic 25.0%
!! GTTTACTAAATTTTATTCCC+GGG - chr6_1:3499109-3499128 Msa0869320:intron 25.0%
!! TTTACTAAATTTTATTCCCG+GGG - chr6_1:3499110-3499129 Msa0869320:intron 25.0%
!! GAAAAATTTTCCCAAAGAAA+AGG - chr6_1:3499153-3499172 Msa0869320:intron 25.0%
! GCTTAACATTATAATATTCC+TGG + chr6_1:3499255-3499274 None:intergenic 25.0%
!!! CATCTTTTTTCTAAATACCT+TGG - chr6_1:3499278-3499297 Msa0869320:intron 25.0%
! AGTTTACCAAATTTATTCCT+AGG + chr6_1:3499342-3499361 None:intergenic 25.0%
! AATGGTAATAAGGTTTCTAA+TGG - chr6_1:3499578-3499597 Msa0869320:intron 25.0%
!! TTTTTACGAATTGACGATTA+TGG + chr6_1:3499778-3499797 None:intergenic 25.0%
!! GCAATTTTCATAAGTTATCA+TGG - chr6_1:3500157-3500176 Msa0869320:intron 25.0%
! TGTTAACCTAGTTTCATAAT+TGG - chr6_1:3500360-3500379 Msa0869320:intron 25.0%
! ACATAACCAATTATGAAACT+AGG + chr6_1:3500369-3500388 None:intergenic 25.0%
! AATTGGTTATGTTGATATTC+AGG - chr6_1:3500377-3500396 Msa0869320:intron 25.0%
!! ATATACACATTTCATTTTGC+AGG - chr6_1:3500507-3500526 Msa0869320:intron 25.0%
!! TATACACATTTCATTTTGCA+GGG - chr6_1:3500508-3500527 Msa0869320:intron 25.0%
! TAGTATATATCTACACTGTT+TGG + chr6_1:3500568-3500587 None:intergenic 25.0%
! ACAGTGTAGATATATACTAT+AGG - chr6_1:3500569-3500588 Msa0869320:CDS 25.0%
! AATAGATTCATTCACTTACA+TGG - chr6_1:3500687-3500706 Msa0869320:CDS 25.0%
!! AAGATCTAAAACAGCAATAA+TGG - chr6_1:3500924-3500943 Msa0869320:CDS 25.0%
TGATGAAGATGAAGAGATTT+GGG + chr6_1:3494996-3495015 None:intergenic 30.0%
!!! GTTTTTGGTATAGTGAGTTT+TGG + chr6_1:3495098-3495117 None:intergenic 30.0%
! ACAGAATCAAAGCATGTTTT+TGG + chr6_1:3495113-3495132 None:intergenic 30.0%
AAGAAACTTACTTAACAGCA+AGG + chr6_1:3495301-3495320 None:intergenic 30.0%
GAATGTTGGTATTTGTGTTT+AGG - chr6_1:3495379-3495398 Msa0869320:exon 30.0%
TTGGTATTTGTGTTTAGGTA+GGG - chr6_1:3495384-3495403 Msa0869320:CDS 30.0%
!! ATTGATTTTGGTATGTTTGG+AGG - chr6_1:3495636-3495655 Msa0869320:intron 30.0%
ATTATCAATGACAATTCTGG+AGG + chr6_1:3495684-3495703 None:intergenic 30.0%
CAAGCATTAAGAAAAACAAG+AGG + chr6_1:3495920-3495939 None:intergenic 30.0%
!! TTGCCTCTAGAATTGATTAT+AGG - chr6_1:3495972-3495991 Msa0869320:intron 30.0%
CAACCTATAATCAATTCTAG+AGG + chr6_1:3495978-3495997 None:intergenic 30.0%
CACATTAGAATTGATTATGG+AGG + chr6_1:3496194-3496213 None:intergenic 30.0%
TTGGTTATATAGACAACAGA+GGG + chr6_1:3496332-3496351 None:intergenic 30.0%
ATATGTGTTCAATTCAGCAA+TGG + chr6_1:3496521-3496540 None:intergenic 30.0%
TCACCAATTATCATGTTATC+AGG - chr6_1:3496645-3496664 Msa0869320:intron 30.0%
CACCAATTATCATGTTATCA+GGG - chr6_1:3496646-3496665 Msa0869320:intron 30.0%
ACCAATTATCATGTTATCAG+GGG - chr6_1:3496647-3496666 Msa0869320:intron 30.0%
! TTATTGAATAAAGGCGTGTT+TGG - chr6_1:3496787-3496806 Msa0869320:intron 30.0%
TAACTATGGACATAAGCATT+TGG + chr6_1:3496966-3496985 None:intergenic 30.0%
AAACAAAAGGAAGATGATAG+TGG - chr6_1:3497211-3497230 Msa0869320:CDS 30.0%
ACTTTGTGCTTTCTTTAGTA+TGG - chr6_1:3497240-3497259 Msa0869320:CDS 30.0%
CGATGTGTTAAGTTAGATAT+CGG - chr6_1:3497273-3497292 Msa0869320:CDS 30.0%
TGGACAACATAATATATGCA+AGG - chr6_1:3497373-3497392 Msa0869320:intron 30.0%
AACATAATATATGCAAGGTC+CGG - chr6_1:3497378-3497397 Msa0869320:intron 30.0%
!!! TATCTACTGTCTTTTTTTGG+TGG + chr6_1:3497421-3497440 None:intergenic 30.0%
TTATGAGTAGAAATCGAACT+CGG + chr6_1:3497528-3497547 None:intergenic 30.0%
TAACTAGCATCTCTATTAAC+AGG + chr6_1:3497570-3497589 None:intergenic 30.0%
CAATATCCACCAATATGATT+TGG + chr6_1:3497781-3497800 None:intergenic 30.0%
!! TTTCTCAAAATAGTGGACTT+CGG - chr6_1:3498015-3498034 Msa0869320:intron 30.0%
AAACCTCATTGGGATAAATA+CGG - chr6_1:3498145-3498164 Msa0869320:CDS 30.0%
!!! TGTTTTAAAGCGCTCAAATT+GGG + chr6_1:3498347-3498366 None:intergenic 30.0%
TGTCTCCTTAAAAATTGAAC+CGG + chr6_1:3498407-3498426 None:intergenic 30.0%
AGAAAGACGGTATTAATCTA+CGG + chr6_1:3498439-3498458 None:intergenic 30.0%
TTGATCAATTGGTGAAGTTT+GGG - chr6_1:3498514-3498533 Msa0869320:intron 30.0%
AAGGTTACTAGACCTATATT+AGG - chr6_1:3498537-3498556 Msa0869320:intron 30.0%
GCAAACTTGATTCCTAATAT+AGG + chr6_1:3498552-3498571 None:intergenic 30.0%
GATTAAGTAGTTTATCCAGA+CGG + chr6_1:3498723-3498742 None:intergenic 30.0%
!! GCTGTTTTCATAAGTTATCT+TGG - chr6_1:3498823-3498842 Msa0869320:intron 30.0%
!!! TATTCCTATGGTTTTATTCC+CGG + chr6_1:3499067-3499086 None:intergenic 30.0%
GAAATTATTCTCATCTCCAT+GGG + chr6_1:3499193-3499212 None:intergenic 30.0%
TGAAATTATTCTCATCTCCA+TGG + chr6_1:3499194-3499213 None:intergenic 30.0%
AAGATGGGAATATTATTCCA+AGG + chr6_1:3499298-3499317 None:intergenic 30.0%
ATTCCTTGGAACATAAAGAT+GGG + chr6_1:3499313-3499332 None:intergenic 30.0%
TATTCCTTGGAACATAAAGA+TGG + chr6_1:3499314-3499333 None:intergenic 30.0%
TTCCAAGGAATATTATTCCT+AGG - chr6_1:3499322-3499341 Msa0869320:intron 30.0%
TTCCTAGGAATAATATTCCT+TGG + chr6_1:3499327-3499346 None:intergenic 30.0%
AACATCTGTGAATGGTAATA+AGG - chr6_1:3499568-3499587 Msa0869320:intron 30.0%
ATTCTTGACCAATGTAAAGT+TGG - chr6_1:3499617-3499636 Msa0869320:intron 30.0%
AGCTGTTTATGTGTATTCTA+AGG - chr6_1:3500536-3500555 Msa0869320:intron 30.0%
! TTTTCAATCTCAACTTGTGT+TGG + chr6_1:3500610-3500629 None:intergenic 30.0%
TCTTAAATATATACTCCCTC+CGG - chr6_1:3500716-3500735 Msa0869320:CDS 30.0%
TTGTTTATAATAGTGATCGG+AGG - chr6_1:3500850-3500869 Msa0869320:CDS 30.0%
TGTTTATAATAGTGATCGGA+GGG - chr6_1:3500851-3500870 Msa0869320:CDS 30.0%
GTCCACTCAAAAAACATCAA+TGG - chr6_1:3494890-3494909 Msa0869320:three_prime_UTR 35.0%
! AAGATGAAGAGATTTGGGTT+TGG + chr6_1:3494991-3495010 None:intergenic 35.0%
GTGATGAAGATGAAGAGATT+TGG + chr6_1:3494997-3495016 None:intergenic 35.0%
!! CTTTTGTTGTAAATGCTCCT+AGG - chr6_1:3495201-3495220 Msa0869320:three_prime_UTR 35.0%
!! GAGTTTTGTAATGACCCTTT+TGG - chr6_1:3495349-3495368 Msa0869320:three_prime_UTR 35.0%
GTTGGTATTTGTGTTTAGGT+AGG - chr6_1:3495383-3495402 Msa0869320:CDS 35.0%
TTTATCTCACTAAGTAGGGT+TGG + chr6_1:3495534-3495553 None:intergenic 35.0%
! CACTTGTTCAACTACCTTTT+AGG - chr6_1:3495750-3495769 Msa0869320:intron 35.0%
TTGGGATACATCTACCTAAA+AGG + chr6_1:3495767-3495786 None:intergenic 35.0%
TTGATTATAGGTTGCACGTT+TGG - chr6_1:3495984-3496003 Msa0869320:intron 35.0%
! TTGATTCTAACTTGCATGCT+TGG - chr6_1:3496263-3496282 Msa0869320:CDS 35.0%
GTTGGTTATATAGACAACAG+AGG + chr6_1:3496333-3496352 None:intergenic 35.0%
GATGAAAATCACAGCAATGT+TGG + chr6_1:3496351-3496370 None:intergenic 35.0%
!!! ACCCTTTTGGTTTTTGAATG+TGG - chr6_1:3496409-3496428 Msa0869320:intron 35.0%
CCCACATTCAAAAACCAAAA+GGG + chr6_1:3496413-3496432 None:intergenic 35.0%
!!! CCCTTTTGGTTTTTGAATGT+GGG - chr6_1:3496410-3496429 Msa0869320:intron 35.0%
ACCCACATTCAAAAACCAAA+AGG + chr6_1:3496414-3496433 None:intergenic 35.0%
ACCCCTGATAACATGATAAT+TGG + chr6_1:3496651-3496670 None:intergenic 35.0%
GGGTGCTTCTTATTGAATAA+AGG - chr6_1:3496778-3496797 Msa0869320:intron 35.0%
ACATAATATATGCAAGGTCC+GGG - chr6_1:3497379-3497398 Msa0869320:intron 35.0%
CAGTAGATAGATACACTTGT+TGG - chr6_1:3497432-3497451 Msa0869320:intron 35.0%
AACTGATTACTCCTGTTCAA+TGG - chr6_1:3497500-3497519 Msa0869320:intron 35.0%
TAGAGATGCTAGTTATTTGC+AGG - chr6_1:3497575-3497594 Msa0869320:intron 35.0%
AGAGATGCTAGTTATTTGCA+GGG - chr6_1:3497576-3497595 Msa0869320:intron 35.0%
!! GTCAGAAAGTGTTTGCTATT+GGG - chr6_1:3497740-3497759 Msa0869320:CDS 35.0%
TGAAATTTCCATGGAAATCC+CGG - chr6_1:3497823-3497842 Msa0869320:intron 35.0%
AACAGTTTACAGTGTTCAAC+CGG + chr6_1:3497845-3497864 None:intergenic 35.0%
! GACTCTTTTCTTAGGAATTG+TGG + chr6_1:3497975-3497994 None:intergenic 35.0%
GTCTGTATAACATCTTGGAT+AGG + chr6_1:3498071-3498090 None:intergenic 35.0%
CATCAGTCTGTATAACATCT+TGG + chr6_1:3498076-3498095 None:intergenic 35.0%
!! ATAGTTCTGGAAACCTCATT+GGG - chr6_1:3498135-3498154 Msa0869320:CDS 35.0%
AATAGAAAATCCAACACCAG+AGG + chr6_1:3498195-3498214 None:intergenic 35.0%
!!! GTTTTAAAAACTGAACCGGA+TGG - chr6_1:3498261-3498280 Msa0869320:intron 35.0%
!!! CTGTTTTAAAGCGCTCAAAT+TGG + chr6_1:3498348-3498367 None:intergenic 35.0%
CAATGGCATTGTTGATCAAT+TGG - chr6_1:3498503-3498522 Msa0869320:intron 35.0%
GTTGATCAATTGGTGAAGTT+TGG - chr6_1:3498513-3498532 Msa0869320:intron 35.0%
AAGTTATCTTCGTAGATTCC+CGG - chr6_1:3499045-3499064 Msa0869320:intron 35.0%
!!! ATTCCTATGGTTTTATTCCC+GGG + chr6_1:3499066-3499085 None:intergenic 35.0%
! GGGAAAATTTTTCTATTCCC+AGG + chr6_1:3499146-3499165 None:intergenic 35.0%
! AATTTTCCCAAAGAAAAGGG+TGG - chr6_1:3499157-3499176 Msa0869320:intron 35.0%
! ATTTTCCCAAAGAAAAGGGT+GGG - chr6_1:3499158-3499177 Msa0869320:intron 35.0%
! TTATTCCCACCCTTTTCTTT+GGG + chr6_1:3499166-3499185 None:intergenic 35.0%
! TTTATTCCCACCCTTTTCTT+TGG + chr6_1:3499167-3499186 None:intergenic 35.0%
!!! TTCCTATTTTTATGGTTCCC+AGG - chr6_1:3499234-3499253 Msa0869320:CDS 35.0%
TTCCTGGGAACCATAAAAAT+AGG + chr6_1:3499239-3499258 None:intergenic 35.0%
ATTCCCATCTTTATGTTCCA+AGG - chr6_1:3499307-3499326 Msa0869320:intron 35.0%
AAGAAGACGCGATAAACTTA+GGG + chr6_1:3499378-3499397 None:intergenic 35.0%
AAAGAAGACGCGATAAACTT+AGG + chr6_1:3499379-3499398 None:intergenic 35.0%
! GTTTATCGCGTCTTCTTTTA+AGG - chr6_1:3499381-3499400 Msa0869320:intron 35.0%
! TCCTATGGTAGACTCATTTT+AGG - chr6_1:3499536-3499555 Msa0869320:intron 35.0%
ACCTAAAATGAGTCTACCAT+AGG + chr6_1:3499540-3499559 None:intergenic 35.0%
GACATCATAACATCTGTGAA+TGG - chr6_1:3499560-3499579 Msa0869320:intron 35.0%
CCTTATCACCAACTTTACAT+TGG + chr6_1:3499628-3499647 None:intergenic 35.0%
!! CCAATGTAAAGTTGGTGATA+AGG - chr6_1:3499625-3499644 Msa0869320:intron 35.0%
AATTGAATGCCTCAATGTGT+TGG - chr6_1:3500081-3500100 Msa0869320:intron 35.0%
!! TTTAACTTTTTGGGCCTGTT+TGG + chr6_1:3500290-3500309 None:intergenic 35.0%
TGTTGATATTCAGGTGATTG+TGG - chr6_1:3500386-3500405 Msa0869320:intron 35.0%
TTCTTGCTTACAATAGTGAC+CGG + chr6_1:3500738-3500757 None:intergenic 35.0%
!!! GATGTTTTTTGAGTGGACTG+AGG + chr6_1:3494888-3494907 None:intergenic 40.0%
!!! GGCCATTGATGTTTTTTGAG+TGG + chr6_1:3494895-3494914 None:intergenic 40.0%
TGAAGAGGAAGAAGAAGCTA+TGG + chr6_1:3494916-3494935 None:intergenic 40.0%
GAATGTGGAAATGAGTGAAG+AGG + chr6_1:3494931-3494950 None:intergenic 40.0%
GGAAGAGTTGAAGAAGAATG+TGG + chr6_1:3494946-3494965 None:intergenic 40.0%
!!! TGGTGGTTTTGATGATGAAG+GGG + chr6_1:3495066-3495085 None:intergenic 40.0%
!!! GTGGTGGTTTTGATGATGAA+GGG + chr6_1:3495067-3495086 None:intergenic 40.0%
!!! AGTGGTGGTTTTGATGATGA+AGG + chr6_1:3495068-3495087 None:intergenic 40.0%
!!! AGTTTTGGAAGTGAAAGTGG+TGG + chr6_1:3495083-3495102 None:intergenic 40.0%
!!! GTGAGTTTTGGAAGTGAAAG+TGG + chr6_1:3495086-3495105 None:intergenic 40.0%
TGGAGGTTCTCGATTAGAAT+TGG - chr6_1:3495653-3495672 Msa0869320:intron 40.0%
! CTGGCTAAATAGTGAGTTGA+AGG - chr6_1:3496071-3496090 Msa0869320:intron 40.0%
! GAATGTGGGTATTTCTGTGT+AGG - chr6_1:3496424-3496443 Msa0869320:intron 40.0%
! TGGGTATTTCTGTGTAGGAA+GGG - chr6_1:3496429-3496448 Msa0869320:intron 40.0%
ATGTGTGTATGTGTTTAGGC+AGG - chr6_1:3496544-3496563 Msa0869320:intron 40.0%
TGCGTTTACTTTGGATGTGT+TGG - chr6_1:3496568-3496587 Msa0869320:intron 40.0%
GTTTACTTTGGATGTGTTGG+AGG - chr6_1:3496571-3496590 Msa0869320:intron 40.0%
ACAAGTACTTAGGCTGCATT+TGG + chr6_1:3497017-3497036 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+GGG - chr6_1:3497380-3497399 Msa0869320:intron 40.0%
!!! CTACTGTCTTTTTTTGGTGG+TGG + chr6_1:3497418-3497437 None:intergenic 40.0%
! TAGATACACTTGTTGGCACT+TGG - chr6_1:3497439-3497458 Msa0869320:intron 40.0%
!!! CTTTTGCATCGTAGGTTGAT+TGG + chr6_1:3497615-3497634 None:intergenic 40.0%
ACCTACGATGCAAAAGTTGT+TGG - chr6_1:3497619-3497638 Msa0869320:intron 40.0%
! ACCAACAACTTTTGCATCGT+AGG + chr6_1:3497623-3497642 None:intergenic 40.0%
!!! TGTTGGTTTTGACCAAGACA+AGG - chr6_1:3497636-3497655 Msa0869320:CDS 40.0%
!! GGTCAGAAAGTGTTTGCTAT+TGG - chr6_1:3497739-3497758 Msa0869320:CDS 40.0%
ACAGTTTACAGTGTTCAACC+GGG + chr6_1:3497844-3497863 None:intergenic 40.0%
ACTTCGGCGAGAAATTAGTT+CGG - chr6_1:3498031-3498050 Msa0869320:intron 40.0%
ACTGATGCAGCAATTAATCC+TGG - chr6_1:3498089-3498108 Msa0869320:CDS 40.0%
GCAATTAATCCTGGTAACAG+CGG - chr6_1:3498098-3498117 Msa0869320:CDS 40.0%
TTTCCAGAACTATCTAGGAG+TGG + chr6_1:3498128-3498147 None:intergenic 40.0%
TGAGGTTTCCAGAACTATCT+AGG + chr6_1:3498133-3498152 None:intergenic 40.0%
!! GATAGTTCTGGAAACCTCAT+TGG - chr6_1:3498134-3498153 Msa0869320:CDS 40.0%
TAGCCGTATTTATCCCAATG+AGG + chr6_1:3498151-3498170 None:intergenic 40.0%
AAAACAGTTGAACCATGAGC+TGG - chr6_1:3498361-3498380 Msa0869320:intron 40.0%
! GTCGTCCGGTTCAATTTTTA+AGG - chr6_1:3498399-3498418 Msa0869320:intron 40.0%
TCAATTGGTGAAGTTTGGGA+AGG - chr6_1:3498518-3498537 Msa0869320:intron 40.0%
AATTGCTCCACAGATTGATC+TGG + chr6_1:3498576-3498595 None:intergenic 40.0%
AGATCAATCTGTGGAGCAAT+TGG - chr6_1:3498575-3498594 Msa0869320:intron 40.0%
GATCAATCTGTGGAGCAATT+GGG - chr6_1:3498576-3498595 Msa0869320:intron 40.0%
AGTTATCTTCGTAGATTCCC+GGG - chr6_1:3499046-3499065 Msa0869320:intron 40.0%
ATTCCCGGGAATAAAACCAT+AGG - chr6_1:3499060-3499079 Msa0869320:intron 40.0%
CATAGGCATGTGTATTCCTA+TGG + chr6_1:3499079-3499098 None:intergenic 40.0%
AGGGTGACGAATATGATTGA+TGG - chr6_1:3499456-3499475 Msa0869320:intron 40.0%
ACGAATATGATTGATGGAGC+TGG - chr6_1:3499462-3499481 Msa0869320:intron 40.0%
TCAACAAAGCGTGATTCCTA+TGG - chr6_1:3499521-3499540 Msa0869320:intron 40.0%
GTTACTACAACTCTGCTTTC+AGG + chr6_1:3499961-3499980 None:intergenic 40.0%
ATGTCATGTCCAACACATTG+AGG + chr6_1:3500093-3500112 None:intergenic 40.0%
TAAGCTCAGTCAATCCAAAC+AGG - chr6_1:3500273-3500292 Msa0869320:intron 40.0%
AGTTGCACATCATGTTTCGT+CGG + chr6_1:3500466-3500485 None:intergenic 40.0%
! GTTTGGTGATTGAAGAGCGA+GGG + chr6_1:3494974-3494993 None:intergenic 45.0%
GGGTGAGAAAGTAAGTGAGT+TGG + chr6_1:3495023-3495042 None:intergenic 45.0%
!!! GTGGTTTTGATGATGAAGGG+GGG + chr6_1:3495064-3495083 None:intergenic 45.0%
!!! GGTGGTTTTGATGATGAAGG+GGG + chr6_1:3495065-3495084 None:intergenic 45.0%
!! ACTAAGTAGGGTTGGCTACT+TGG + chr6_1:3495526-3495545 None:intergenic 45.0%
TTGCACGTTTGGTCTGTGAT+TGG - chr6_1:3495995-3496014 Msa0869320:intron 45.0%
! GTGGGTATTTCTGTGTAGGA+AGG - chr6_1:3496428-3496447 Msa0869320:intron 45.0%
TAGGCAGGATGCGTTTACTT+TGG - chr6_1:3496559-3496578 Msa0869320:intron 45.0%
ATCTGGGTCAGGTTTCGTTT+GGG - chr6_1:3496604-3496623 Msa0869320:intron 45.0%
! GTCAGGTTTCGTTTGGGATA+AGG - chr6_1:3496610-3496629 Msa0869320:intron 45.0%
! GGTTTCGTTTGGGATAAGGA+TGG - chr6_1:3496614-3496633 Msa0869320:intron 45.0%
!! TCATGTTATCAGGGGTGCTT+CGG - chr6_1:3496655-3496674 Msa0869320:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr6_1:3497353-3497372 Msa0869320:intron 45.0%
!!! TGTCTTTTTTTGGTGGTGGC+CGG + chr6_1:3497414-3497433 None:intergenic 45.0%
! ATTGGCCTGAGCTTGTCTTT+AGG + chr6_1:3497688-3497707 None:intergenic 45.0%
!! AGTGTTTGCTATTGGGAACC+CGG - chr6_1:3497747-3497766 Msa0869320:CDS 45.0%
CTAGATCACACGCTTACAAC+TGG - chr6_1:3497899-3497918 Msa0869320:intron 45.0%
CGCTTACAACTGGAGTTATC+AGG - chr6_1:3497909-3497928 Msa0869320:intron 45.0%
GAAATTAGTTCGGCTGCAAC+TGG - chr6_1:3498041-3498060 Msa0869320:intron 45.0%
ATTAATCCTGGTAACAGCGG+AGG - chr6_1:3498101-3498120 Msa0869320:CDS 45.0%
TTAATCCTGGTAACAGCGGA+GGG - chr6_1:3498102-3498121 Msa0869320:CDS 45.0%
ACGGCTATATACTCTCCATC+TGG - chr6_1:3498164-3498183 Msa0869320:CDS 45.0%
GTTCGACTGATTGTACCATC+CGG + chr6_1:3498279-3498298 None:intergenic 45.0%
AACCAGCACTGTCTACAGTT+TGG - chr6_1:3498303-3498322 Msa0869320:intron 45.0%
AACCAAACTGTAGACAGTGC+TGG + chr6_1:3498308-3498327 None:intergenic 45.0%
GTTTGCTCCAGATCAATCTG+TGG - chr6_1:3498566-3498585 Msa0869320:intron 45.0%
! AGTAAGTGGAGTGCTTGTCT+TGG - chr6_1:3498599-3498618 Msa0869320:intron 45.0%
AAACTTACTGCTTTCCCAGC+TGG + chr6_1:3498642-3498661 None:intergenic 45.0%
! TCCCAGGAATGTTTTATCCC+CGG + chr6_1:3499130-3499149 None:intergenic 45.0%
! TTGGTGATAAGGTACGTTGC+TGG - chr6_1:3499636-3499655 Msa0869320:intron 45.0%
! TGACGGGGATCTTTTCTTTG+TGG + chr6_1:3500428-3500447 None:intergenic 45.0%
TGCTTACAATAGTGACCGGA+GGG + chr6_1:3500734-3500753 None:intergenic 45.0%
TTGCTTACAATAGTGACCGG+AGG + chr6_1:3500735-3500754 None:intergenic 45.0%
!!! AATAAAAAATAATTCAATTT+TGG - chr6_1:3495839-3495858 Msa0869320:intron 5.0%
GATTGAAGAGCGAGGGAATG+AGG + chr6_1:3494967-3494986 None:intergenic 50.0%
!! GGTTTGGTGATTGAAGAGCG+AGG + chr6_1:3494975-3494994 None:intergenic 50.0%
!! TTGATGATGAAGGGGGGTGT+AGG + chr6_1:3495058-3495077 None:intergenic 50.0%
TCATCAGACTGCAGCTTCCT+AGG + chr6_1:3495221-3495240 None:intergenic 50.0%
GATGTGTTGGAGGTTCCTCA+GGG - chr6_1:3496581-3496600 Msa0869320:intron 50.0%
GATCTGGGTCAGGTTTCGTT+TGG - chr6_1:3496603-3496622 Msa0869320:intron 50.0%
!!! TCTTTTTTTGGTGGTGGCCG+GGG + chr6_1:3497412-3497431 None:intergenic 50.0%
!!! GTCTTTTTTTGGTGGTGGCC+GGG + chr6_1:3497413-3497432 None:intergenic 50.0%
GCACAGCAACATCCTTGTCT+TGG + chr6_1:3497651-3497670 None:intergenic 50.0%
AAGCTCAGGCCAATACCTGT+TGG - chr6_1:3497694-3497713 Msa0869320:CDS 50.0%
GCAGAGACACCAACAGGTAT+TGG + chr6_1:3497706-3497725 None:intergenic 50.0%
AAGTCAGCAGAGACACCAAC+AGG + chr6_1:3497712-3497731 None:intergenic 50.0%
!! GTCTCTGCTGACTTGCTTGT+TGG - chr6_1:3497718-3497737 Msa0869320:CDS 50.0%
GTGTTCAACCGGGATTTCCA+TGG + chr6_1:3497834-3497853 None:intergenic 50.0%
!! TCAGAGCTCACAGTATCGAC+AGG + chr6_1:3498218-3498237 None:intergenic 50.0%
ACAGTTGAACCATGAGCTGG+TGG - chr6_1:3498364-3498383 Msa0869320:intron 50.0%
GTGGAGCAATTGGGAGTAAG+TGG - chr6_1:3498585-3498604 Msa0869320:intron 50.0%
! TTATAGAGTTAGGCGCCGTC+TGG - chr6_1:3498705-3498724 Msa0869320:intron 50.0%
TCCCGGGGATAAAACATTCC+TGG - chr6_1:3499125-3499144 Msa0869320:intron 50.0%
! CCCAGGAATGTTTTATCCCC+GGG + chr6_1:3499129-3499148 None:intergenic 50.0%
CCCGGGGATAAAACATTCCT+GGG - chr6_1:3499126-3499145 Msa0869320:intron 50.0%
GGGTGGGAATAAAGTTCCCA+TGG - chr6_1:3499174-3499193 Msa0869320:CDS 50.0%
!! GTGATTGTGGAAGTGTTGCG+AGG - chr6_1:3500399-3500418 Msa0869320:intron 50.0%
CATCATGTTTCGTCGGCCTT+CGG + chr6_1:3500459-3500478 None:intergenic 50.0%
GGTGTAGGAGGAAAAGGGTG+GGG + chr6_1:3495043-3495062 None:intergenic 55.0%
GGGTGTAGGAGGAAAAGGGT+GGG + chr6_1:3495044-3495063 None:intergenic 55.0%
! AGGGGGGTGTAGGAGGAAAA+GGG + chr6_1:3495048-3495067 None:intergenic 55.0%
! AAGGGGGGTGTAGGAGGAAA+AGG + chr6_1:3495049-3495068 None:intergenic 55.0%
! ATGATGAAGGGGGGTGTAGG+AGG + chr6_1:3495055-3495074 None:intergenic 55.0%
GGATGTGTTGGAGGTTCCTC+AGG - chr6_1:3496580-3496599 Msa0869320:intron 55.0%
TTGGAGGTTCCTCAGGGATC+TGG - chr6_1:3496587-3496606 Msa0869320:intron 55.0%
TGGAGGTTCCTCAGGGATCT+GGG - chr6_1:3496588-3496607 Msa0869320:intron 55.0%
AAACCTGACCCAGATCCCTG+AGG + chr6_1:3496599-3496618 None:intergenic 55.0%
!! GCTTCGGATCTCAGGTTGGT+AGG - chr6_1:3496671-3496690 Msa0869320:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr6_1:3497351-3497370 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr6_1:3497348-3497367 Msa0869320:intron 55.0%
!! CGAACTCGGTGCCATTGAAC+AGG + chr6_1:3497514-3497533 None:intergenic 55.0%
ACGCGCCTAAAGACAAGCTC+AGG - chr6_1:3497680-3497699 Msa0869320:CDS 55.0%
GGGCCACTCCTAGATAGTTC+TGG - chr6_1:3498122-3498141 Msa0869320:CDS 55.0%
TCTCCATCTGGTGCATCCTC+TGG - chr6_1:3498176-3498195 Msa0869320:CDS 55.0%
ACACCAGAGGATGCACCAGA+TGG + chr6_1:3498182-3498201 None:intergenic 55.0%
TCTGGTGCATCCTCTGGTGT+TGG - chr6_1:3498182-3498201 Msa0869320:CDS 55.0%
GGGGTGTAGGAGGAAAAGGG+TGG + chr6_1:3495045-3495064 None:intergenic 60.0%
GTTCCTCAGGGATCTGGGTC+AGG - chr6_1:3496593-3496612 Msa0869320:intron 60.0%
!! TCAGGGGTGCTTCGGATCTC+AGG - chr6_1:3496663-3496682 Msa0869320:intron 60.0%
GGGTGCTTCGGATCTCAGGT+TGG - chr6_1:3496667-3496686 Msa0869320:intron 60.0%
AAGGTCCGGGGTTCAAACCC+CGG - chr6_1:3497392-3497411 Msa0869320:intron 60.0%
CCAGCAAGACCACCAGCTCA+TGG + chr6_1:3498376-3498395 None:intergenic 60.0%
! CCATGAGCTGGTGGTCTTGC+TGG - chr6_1:3498373-3498392 Msa0869320:intron 60.0%
!! GGTCTTGCTGGTTCGTCGTC+CGG - chr6_1:3498385-3498404 Msa0869320:intron 60.0%
GTCTTGGATGCTCCTGCCAC+TGG - chr6_1:3498615-3498634 Msa0869320:intron 60.0%
TGCTTTCCCAGCTGGACCAG+TGG + chr6_1:3498634-3498653 None:intergenic 60.0%
! CCTTCGGCTCGAGAATGACG+GGG + chr6_1:3500443-3500462 None:intergenic 60.0%
! GCCTTCGGCTCGAGAATGAC+GGG + chr6_1:3500444-3500463 None:intergenic 60.0%
! GGCCTTCGGCTCGAGAATGA+CGG + chr6_1:3500445-3500464 None:intergenic 60.0%
AGTGGCCCTCCGCTGTTACC+AGG + chr6_1:3498110-3498129 None:intergenic 65.0%
CTCCTGCCACTGGTCCAGCT+GGG - chr6_1:3498625-3498644 Msa0869320:intron 65.0%
TTCCCAGCTGGACCAGTGGC+AGG + chr6_1:3498630-3498649 None:intergenic 65.0%
CCCCGTCATTCTCGAGCCGA+AGG - chr6_1:3500440-3500459 Msa0869320:intron 65.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr6_1:3497400-3497419 None:intergenic 70.0%
GCTCCTGCCACTGGTCCAGC+TGG - chr6_1:3498624-3498643 Msa0869320:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 3494876 3500980 3494876 ID=Msa0869320;Name=Msa0869320
chr6_1 mRNA 3494876 3500980 3494876 ID=Msa0869320-mRNA-1;Parent=Msa0869320;Name=Msa0869320-mRNA-1;_AED=0.06;_eAED=0.06;_QI=33|0.77|0.9|1|0.88|0.8|10|357|455
chr6_1 exon 3494876 3494980 3494876 ID=Msa0869320-mRNA-1:exon:1064;Parent=Msa0869320-mRNA-1
chr6_1 exon 3495128 3495457 3495128 ID=Msa0869320-mRNA-1:exon:1063;Parent=Msa0869320-mRNA-1
chr6_1 exon 3496210 3496344 3496210 ID=Msa0869320-mRNA-1:exon:1062;Parent=Msa0869320-mRNA-1
chr6_1 exon 3497203 3497355 3497203 ID=Msa0869320-mRNA-1:exon:1061;Parent=Msa0869320-mRNA-1
chr6_1 exon 3497450 3497518 3497450 ID=Msa0869320-mRNA-1:exon:1060;Parent=Msa0869320-mRNA-1
chr6_1 exon 3497630 3497828 3497630 ID=Msa0869320-mRNA-1:exon:1059;Parent=Msa0869320-mRNA-1
chr6_1 exon 3497926 3497963 3497926 ID=Msa0869320-mRNA-1:exon:1058;Parent=Msa0869320-mRNA-1
chr6_1 exon 3498088 3498259 3498088 ID=Msa0869320-mRNA-1:exon:1057;Parent=Msa0869320-mRNA-1
chr6_1 exon 3499172 3499294 3499172 ID=Msa0869320-mRNA-1:exon:1056;Parent=Msa0869320-mRNA-1
chr6_1 exon 3500547 3500980 3500547 ID=Msa0869320-mRNA-1:exon:1055;Parent=Msa0869320-mRNA-1
chr6_1 five_prime_UTR 3500948 3500980 3500948 ID=Msa0869320-mRNA-1:five_prime_utr;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3500547 3500947 3500547 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3499172 3499294 3499172 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3498088 3498259 3498088 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3497926 3497963 3497926 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3497630 3497828 3497630 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3497450 3497518 3497450 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3497203 3497355 3497203 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3496210 3496344 3496210 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 CDS 3495380 3495457 3495380 ID=Msa0869320-mRNA-1:cds;Parent=Msa0869320-mRNA-1
chr6_1 three_prime_UTR 3495128 3495379 3495128 ID=Msa0869320-mRNA-1:three_prime_utr;Parent=Msa0869320-mRNA-1
chr6_1 three_prime_UTR 3494876 3494980 3494876 ID=Msa0869320-mRNA-1:three_prime_utr;Parent=Msa0869320-mRNA-1
Gene Sequence

>Msa0869320

ATGGCCATAGCTTCTTCTTCCTCTTCACTCATTTCCACATTCTTCTTCAACTCTTCCTCATTCCCTCGCTCTTCAATCACCAAACCCAAATCTCTTCATCTTCATCACACACCAACTCACTTACTTTCTCACCCCACCCTTTTCCTCCTACACCCCCCTTCATCATCAAAACCACCACTTTCACTTCCAAAACTCACTATACCAAAAACATGCTTTGATTCTGTACTCATTCTATGTACTTCACTTGCACTATCTTTGACTCTCTTCATTTCAAATGTTGATTCAGCTTCTGCTTTTGTTGTAAATGCTCCTAGGAAGCTGCAGTCTGATGAACTTGCTACTGTTCGTTTGTTTCAAGAGAATACTCCTTCTGTTGTTTATATAACTAACCTTGCTGTTAAGCAGGATGCGTTTACTTTGGATGTGTTGGAGGTTCCTCAGGGATCTGGGTCAGGTTTCGTTTGGGATAAGGATGGTCATATAGTCACCAATTATCATGTTATCAGGGGTGCTTCGGATCTCAGGGTCACTCTTGCTGACCAATCAACCTACGATGCAAAAGTTGTTGGTTTTGACCAAGACAAGGATGTTGCTGTGCTGCGTGTTGACGCGCCTAAAGACAAGCTCAGGCCAATACCTGTTGGTGTCTCTGCTGACTTGCTTGTTGGTCAGAAAGTGTTTGCTATTGGGAACCCGTTTGGACTAGATCACACGCTTACAACTGGAGTTATCAGTGGACTTCGGCGAGAAATTAGTTCGGCTGCAACTGGTCGTCCTATCCAAGATGTTATACAGACTGATGCAGCAATTAATCCTGGTAACAGCGGAGGGCCACTCCTAGATAGTTCTGGAAACCTCATTGGGATAAATACGGCTATATACTCTCCATCTGGTGCATCCTCTGGTGTTGGATTTTCTATTCCTGTCGATACTTTTCATCCCAATTTGAGCGCTTTAAAACAGTTGAACCATGAGCTGGTGGTCTTGCTGGTTCGTCGTCCGGTCAATGGCATTGTTGATCAATTGGTGAAGTTTGGGAAGGTTACTAGACCTATATTAGGAATCAAGTTTGCTCCAGATCAATCTGTGGAGCAATTGGGAGTAAGTGGAGTGCTTGTCTTGGATGCTCCTGCCACTGGTCCAGCTGGGAAAGCAGGCTTACAATCAACAAAGCGTGATTCCTATGGTAGACTCATTTTAGGTGACATCATAACATCTGTGAATGGTAATAAGGTTTCTAATGGAAGTGATTTGTACAGAATTCTTGACCAATGTAAAGTTGGTGATAAGGTGATTGTGGAAGTGTTGCGAGGAGACCACAAAGAAAAGATCCCCGTCATTCTCGAGCCGAAGGCCGACGAAACATGA

Protein sequence

>Msa0869320

MAIASSSSSLISTFFFNSSSFPRSSITKPKSLHLHHTPTHLLSHPTLFLLHPPSSSKPPLSLPKLTIPKTCFDSVLILCTSLALSLTLFISNVDSASAFVVNAPRKLQSDELATVRLFQENTPSVVYITNLAVKQDAFTLDVLEVPQGSGSGFVWDKDGHIVTNYHVIRGASDLRVTLADQSTYDAKVVGFDQDKDVAVLRVDAPKDKLRPIPVGVSADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSGNLIGINTAIYSPSGASSGVGFSIPVDTFHPNLSALKQLNHELVVLLVRRPVNGIVDQLVKFGKVTRPILGIKFAPDQSVEQLGVSGVLVLDAPATGPAGKAGLQSTKRDSYGRLILGDIITSVNGNKVSNGSDLYRILDQCKVGDKVIVEVLRGDHKEKIPVILEPKADET*