AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0866060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866060 MtrunA17_Chr5g0448751 86.801 697 32 8 17 710 1 640 0.0 1040
Msa0866060 MtrunA17_Chr3g0079741 39.060 617 275 12 121 710 124 666 2.09e-115 364
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866060 AT4G35440.1 56.728 654 190 9 76 710 52 631 0.0 639
Msa0866060 AT4G35440.2 56.728 654 190 9 76 710 52 631 0.0 639
Msa0866060 AT1G55620.2 38.740 635 299 9 79 691 104 670 1.56e-118 374
Msa0866060 AT1G55620.1 39.252 535 248 6 169 691 5 474 5.35e-97 311

Find 181 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCCCGCCCTTTCTTAA+AGG 0.140965 5_4:+67456397 Msa0866060:CDS
TATGCCCCATCTCTCTTTAT+TGG 0.172919 5_4:+67457213 Msa0866060:CDS
GTAATACTTGTTCCCGCTTT+TGG 0.215841 5_4:+67456335 Msa0866060:CDS
AAAAGCTTCTTTCCCTATAC+TGG 0.219006 5_4:+67456999 Msa0866060:CDS
GATCTACAAGAAGATATTTC+TGG 0.225097 5_4:-67458918 None:intergenic
AAACCCCAATAGAGGATTTC+AGG 0.241095 5_4:-67457057 None:intergenic
TTCTGAATGGATTCGTAATT+CGG 0.248961 5_4:+67456057 Msa0866060:CDS
TGCTTGGTTGGTCTCTTAAC+AGG 0.250823 5_4:+67456094 Msa0866060:CDS
TTCAGTCTCTAACCCTTTCT+AGG 0.269824 5_4:-67458593 None:intergenic
GAGCAGTAGGCTTGTCTTCA+TGG 0.271244 5_4:+67458814 Msa0866060:CDS
GGTTTCAATGCTGCCGTTGC+TGG 0.284939 5_4:+67456587 Msa0866060:CDS
GCTTCTGTCATTTCTGAGAT+TGG 0.287776 5_4:+67456713 Msa0866060:CDS
CGTCACAAATCTTGTCTTCA+TGG 0.289773 5_4:-67459081 None:intergenic
CTCTTTATTGGTGGTGCAAC+TGG 0.292571 5_4:+67457225 Msa0866060:CDS
GTTGCATCACCACAAGCTTA+TGG 0.300491 5_4:+67457321 Msa0866060:CDS
CATTCGAGCGTTTGGAAAAT+CGG 0.306344 5_4:+67459220 Msa0866060:CDS
ATATCCTGAAATCCTCTATT+GGG 0.308167 5_4:+67457053 Msa0866060:CDS
TATATCCTGAAATCCTCTAT+TGG 0.313244 5_4:+67457052 Msa0866060:CDS
CTTGGAGACATTCGAGCGTT+TGG 0.318252 5_4:+67459212 Msa0866060:CDS
GGAATGGCTGCGACTCTTGC+AGG 0.323506 5_4:+67458711 Msa0866060:CDS
AGCTCGGAGGGGAAGGAGTT+TGG 0.326802 5_4:-67456537 None:intergenic
ACTTAGGAATGATACAATTA+TGG 0.347813 5_4:+67455651 Msa0866060:five_prime_UTR
TTTGTTGTGGGATGGGATTC+CGG 0.349408 5_4:+67456259 Msa0866060:CDS
GCTGCTACACTTTGATTTGT+TGG 0.351267 5_4:+67458526 Msa0866060:CDS
CTCCTTCCCCTCCGAGCTGC+TGG 0.352742 5_4:+67456542 Msa0866060:CDS
TTTAGGCACTGGTAATTCCT+TGG 0.356178 5_4:+67456439 Msa0866060:CDS
ACTTCTCTCTGTCGTGCTTC+CGG 0.359138 5_4:+67457174 Msa0866060:CDS
CTCCCGCTGTATTTATTGTT+GGG 0.360626 5_4:+67456883 Msa0866060:CDS
GAAAGGGCGGGAATTGGAAT+TGG 0.369550 5_4:-67456390 None:intergenic
GATACTGATGATACTTTGAT+TGG 0.372612 5_4:+67459179 Msa0866060:CDS
ATTGCAGCTTCTATTACTTT+AGG 0.372973 5_4:+67456422 Msa0866060:CDS
CAGATAAACCTCCCAGTATA+GGG 0.373492 5_4:-67457011 None:intergenic
TATATGATGTAGACCAAGAT+AGG 0.374540 5_4:-67456933 None:intergenic
TCGTTTCATTGACCCTATCT+TGG 0.384744 5_4:+67456920 Msa0866060:CDS
TCTGAATGGATTCGTAATTC+GGG 0.387923 5_4:+67456058 Msa0866060:CDS
GATGGAATAATGGGTGGCTT+AGG 0.388765 5_4:+67455803 Msa0866060:CDS
TTAGGCACTGGTAATTCCTT+GGG 0.389974 5_4:+67456440 Msa0866060:CDS
GGTGCAACTGGTATGGCTTA+TGG 0.397493 5_4:+67457237 Msa0866060:CDS
ACAGATAAACCTCCCAGTAT+AGG 0.404053 5_4:-67457012 None:intergenic
TCTGCTGCCGGCCTCTCTGC+TGG 0.404243 5_4:+67456566 Msa0866060:CDS
CTTTAAGAAAGGGCGGGAAT+TGG 0.404300 5_4:-67456396 None:intergenic
AACCATGAGGCACCTCTATC+CGG 0.405987 5_4:-67456278 None:intergenic
GCTCCCGCTGTATTTATTGT+TGG 0.406865 5_4:+67456882 Msa0866060:CDS
TGCAATAACAGTAACACGTT+CGG 0.407092 5_4:+67455898 Msa0866060:CDS
TTTGGAAAATCGGCAAAGTC+TGG 0.407852 5_4:+67459230 Msa0866060:CDS
ATGAGTTGTTGTTGTTATAG+TGG 0.414832 5_4:+67455764 Msa0866060:CDS
CTGCTACACTTTGATTTGTT+GGG 0.415556 5_4:+67458527 Msa0866060:CDS
TTGCATCACCACAAGCTTAT+GGG 0.419579 5_4:+67457322 Msa0866060:CDS
GCCCCATCTCTCTTTATTGG+TGG 0.420047 5_4:+67457216 Msa0866060:CDS
GCCAACTTCACAACTACTAA+TGG 0.423560 5_4:+67455956 Msa0866060:CDS
AGTATAGGGAAAGAAGCTTT+TGG 0.424009 5_4:-67456997 None:intergenic
ATAATATCTTCATGCTTGGT+TGG 0.426952 5_4:+67456082 Msa0866060:CDS
TTATTGTTGGGTATCTTATG+TGG 0.429316 5_4:+67456895 Msa0866060:CDS
CAGCGTATGGTTGTCTATGC+TGG 0.432242 5_4:+67458500 Msa0866060:intron
GGGAATAATATCTTCATGCT+TGG 0.434628 5_4:+67456078 Msa0866060:CDS
ATCCAGCAGCTCGGAGGGGA+AGG 0.438621 5_4:-67456544 None:intergenic
TTCGTGATTTGTTGTGGGAT+GGG 0.439926 5_4:+67456252 Msa0866060:CDS
GCAATAACAGTAACACGTTC+GGG 0.445751 5_4:+67455899 Msa0866060:CDS
TGTAAGGAGAACATTAGTTT+CGG 0.452473 5_4:+67459055 Msa0866060:CDS
TGTTTGAGGAAGAAGAAGAA+AGG 0.453309 5_4:-67455925 None:intergenic
TATTGGTGGTGCAACTGGTA+TGG 0.455094 5_4:+67457230 Msa0866060:CDS
GACAAAGAGAGGTGATGAAA+GGG 0.455593 5_4:+67458851 Msa0866060:CDS
GGAGAACGAAAGTCGTAGTC+TGG 0.455808 5_4:-67456764 None:intergenic
GTCATTTCTGAGATTGGCCT+CGG 0.456281 5_4:+67456719 Msa0866060:CDS
CAGTGGAAGTAGTATTGGTA+AGG 0.459156 5_4:-67456670 None:intergenic
TACGACTTTCGTTCTCCTGC+TGG 0.462599 5_4:+67456770 Msa0866060:CDS
ATAATAGCCTCCTACTAATC+CGG 0.472882 5_4:-67457193 None:intergenic
AGCAGATCCAGCAGCTCGGA+GGG 0.474259 5_4:-67456549 None:intergenic
ATGAAACAATGAATTATGTA+AGG 0.474357 5_4:+67459039 Msa0866060:CDS
GGGGAAGAAGATGGAATAAT+GGG 0.474940 5_4:+67455794 Msa0866060:CDS
AATAACAGTGGAAGTAGTAT+TGG 0.476615 5_4:-67456675 None:intergenic
AGAGAAGGAGAAGTTGAGGA+AGG 0.476894 5_4:+67456016 Msa0866060:CDS
CAAGAAGATATTTCTGGAAA+CGG 0.477909 5_4:-67458912 None:intergenic
TTGGAAATTCCATTGCCAAA+TGG 0.479995 5_4:+67456486 Msa0866060:CDS
CGTGGAGAGACCTTTGACAA+AGG 0.482833 5_4:-67457112 None:intergenic
CTATTCAAGAAACATGGAAA+AGG 0.487861 5_4:+67456312 Msa0866060:CDS
TGGTAATTCCTTGGGTCCTG+AGG 0.487982 5_4:+67456448 Msa0866060:CDS
ATGAAATTCGTGATTTGTTG+TGG 0.489249 5_4:+67456246 Msa0866060:CDS
ATGTCGACGCTGGGACCCTC+AGG 0.492267 5_4:-67456464 None:intergenic
TGTTGTTATAGTGGAATGGC+GGG 0.494003 5_4:+67455773 Msa0866060:CDS
AGGAGTGGAAGCAATCCATT+TGG 0.495533 5_4:-67456501 None:intergenic
AACAAGAAGACCTCCAAAAG+CGG 0.500440 5_4:-67456348 None:intergenic
GCTTCTATTACTTTAGGCAC+TGG 0.501302 5_4:+67456428 Msa0866060:CDS
CGAGCTGCTGGATCTGCTGC+CGG 0.501727 5_4:+67456554 Msa0866060:CDS
CAGCCATTCCAACCTGCAAA+AGG 0.502309 5_4:-67458698 None:intergenic
TGAAATTCGTGATTTGTTGT+GGG 0.502918 5_4:+67456247 Msa0866060:CDS
CATTCTCAAAACCCCAATAG+AGG 0.505904 5_4:-67457065 None:intergenic
GGAATTTCCAATGTCGACGC+TGG 0.506064 5_4:-67456474 None:intergenic
AGATCAATTGAGTTATCTAC+TGG 0.506435 5_4:+67458936 Msa0866060:CDS
TGTGATTAACCTCTCTCTGT+TGG 0.506709 5_4:+67457296 Msa0866060:CDS
GCTGCAATAGCCTTTAAGAA+AGG 0.508201 5_4:-67456407 None:intergenic
TTGTTGTTATAGTGGAATGG+CGG 0.509331 5_4:+67455772 Msa0866060:CDS
ACCATTAGTAGTTGTGAAGT+TGG 0.509522 5_4:-67455957 None:intergenic
GACAATCTTCACAAGGCCAC+TGG 0.512827 5_4:+67456970 Msa0866060:CDS
TTAGGATGTGCGGTTGGAGT+CGG 0.514567 5_4:+67455821 Msa0866060:CDS
ATTGAAACCAGCAGAGAGGC+CGG 0.514866 5_4:-67456573 None:intergenic
CACCACCAATAAAGAGAGAT+GGG 0.516008 5_4:-67457218 None:intergenic
TCGGAGGGGAAGGAGTTTGG+CGG 0.517789 5_4:-67456534 None:intergenic
CTATCTTTGCTATTGTGAAG+CGG 0.518762 5_4:-67455995 None:intergenic
TATTCAAGAAACATGGAAAA+GGG 0.520527 5_4:+67456313 Msa0866060:CDS
CTGCAATAGCCTTTAAGAAA+GGG 0.524525 5_4:-67456406 None:intergenic
GAGTTCTTCAACCAAGTAGT+TGG 0.525868 5_4:+67455849 Msa0866060:CDS
TTGTTATAGTGGAATGGCGG+GGG 0.528796 5_4:+67455775 Msa0866060:CDS
TTGAATTGACACAGGACTAT+CGG 0.531346 5_4:+67458772 Msa0866060:CDS
GGTAATTCCTTGGGTCCTGA+GGG 0.533941 5_4:+67456449 Msa0866060:CDS
ACAAGAAGACCTCCAAAAGC+GGG 0.535676 5_4:-67456347 None:intergenic
AGATAGAGAAGGAGAAGTTG+AGG 0.535908 5_4:+67456012 Msa0866060:CDS
TAGTCTGGAACTTGAAAGGC+AGG 0.536027 5_4:-67456749 None:intergenic
ATTCGTGATTTGTTGTGGGA+TGG 0.536955 5_4:+67456251 Msa0866060:CDS
GAATCTCGACCCTTTGTCAA+AGG 0.536999 5_4:+67457102 Msa0866060:CDS
GAGGGTCCCAGCGTCGACAT+TGG 0.538932 5_4:+67456467 Msa0866060:CDS
TGATGATAATGCCAACTACT+TGG 0.542078 5_4:-67455860 None:intergenic
TTGATTGGTTTATTGACACT+TGG 0.544041 5_4:+67459194 Msa0866060:CDS
TTACCACTACTTGGAGCAGT+AGG 0.544067 5_4:+67458801 Msa0866060:CDS
AGCGAAGAAACAACCAGCAA+CGG 0.545696 5_4:-67456600 None:intergenic
AGACAAAGAGAGGTGATGAA+AGG 0.546343 5_4:+67458850 Msa0866060:CDS
AGTTTGGCGGAAGTGAAAAG+AGG 0.546347 5_4:-67456521 None:intergenic
GTGGAGAGACCTTTGACAAA+GGG 0.546880 5_4:-67457111 None:intergenic
ATACTGGGAGGTTTATCTGT+AGG 0.547076 5_4:+67457015 Msa0866060:CDS
AGAAGCAGAACTGCAGTAAG+TGG 0.547744 5_4:-67458747 None:intergenic
GAACTGCAGTAAGTGGTACT+TGG 0.552159 5_4:-67458740 None:intergenic
AAAGCTTCTTTCCCTATACT+GGG 0.555375 5_4:+67457000 Msa0866060:CDS
CATGAAGACAAGATTTGTGA+CGG 0.555715 5_4:+67459082 Msa0866060:CDS
TTGTTGTTGTTATAGTGGAA+TGG 0.555761 5_4:+67455769 Msa0866060:CDS
CGGCAGCAGATCCAGCAGCT+CGG 0.555894 5_4:-67456553 None:intergenic
GCACCACCAATAAAGAGAGA+TGG 0.559910 5_4:-67457219 None:intergenic
GGAGAGTTCAAGTAGTGTAG+AGG 0.565036 5_4:+67459007 Msa0866060:CDS
TTTGAGTAAATCATGTCAAG+TGG 0.568231 5_4:+67458986 Msa0866060:CDS
AGATCTATTACTTTAGTAAG+CGG 0.571523 5_4:-67459119 None:intergenic
CAAGGATTACAACAACACTT+AGG 0.572730 5_4:+67455635 None:intergenic
GCTGGGACCCTCAGGACCCA+AGG 0.573710 5_4:-67456456 None:intergenic
GTTGGCGTAATTCTTGTTTG+AGG 0.573848 5_4:-67455939 None:intergenic
TACCCAACAATAAATACAGC+GGG 0.573907 5_4:-67456885 None:intergenic
GAAAAGAAGCTGGCGTGGCA+CGG 0.574919 5_4:+67458658 Msa0866060:CDS
AAATGTTCAGGAAAAGAAGC+TGG 0.576187 5_4:+67458648 Msa0866060:intron
GGGAATTGGAATTGGAAAGA+AGG 0.576410 5_4:-67456382 None:intergenic
GAATTTCCAATGTCGACGCT+GGG 0.578311 5_4:-67456473 None:intergenic
GTCGTAGTCTGGAACTTGAA+AGG 0.578609 5_4:-67456753 None:intergenic
CAGGATATAGCAATGCTATG+AGG 0.579477 5_4:-67457038 None:intergenic
AGTGGAAGTAGTATTGGTAA+GGG 0.581373 5_4:-67456669 None:intergenic
TGGGATGGGATTCCGGATAG+AGG 0.587719 5_4:+67456266 Msa0866060:CDS
AATAGCCTTTAAGAAAGGGC+GGG 0.587840 5_4:-67456402 None:intergenic
ATCACCACAAGCTTATGGGC+TGG 0.588084 5_4:+67457326 Msa0866060:CDS
CACAATAGCAAAGATAGAGA+AGG 0.590816 5_4:+67456001 Msa0866060:CDS
CAGCAGATCCAGCAGCTCGG+AGG 0.593260 5_4:-67456550 None:intergenic
GTCTGGAAGCGAAAATCGAA+AGG 0.593828 5_4:+67459247 Msa0866060:CDS
GCAGATCCAGCAGCTCGGAG+GGG 0.594250 5_4:-67456548 None:intergenic
GTTGTTATAGTGGAATGGCG+GGG 0.594261 5_4:+67455774 Msa0866060:CDS
GCTTCTGTTTGAATTGACAC+AGG 0.594321 5_4:+67458764 Msa0866060:CDS
GGCGGAAGTGAAAAGAGGAG+TGG 0.597862 5_4:-67456516 None:intergenic
GGAAGCAATCCATTTGGCAA+TGG 0.599286 5_4:-67456495 None:intergenic
AACAGAGAGAGGTTAATCAC+AGG 0.599581 5_4:-67457294 None:intergenic
TTCCGGATAGAGGTGCCTCA+TGG 0.606371 5_4:+67456276 Msa0866060:CDS
TCGCTGTTGAGTCTGTCTTG+TGG 0.606446 5_4:+67456618 Msa0866060:CDS
TATCCTGAAATCCTCTATTG+GGG 0.606610 5_4:+67457054 Msa0866060:CDS
CAATAGCCTTTAAGAAAGGG+CGG 0.607717 5_4:-67456403 None:intergenic
TTCAGGAAAAGAAGCTGGCG+TGG 0.609126 5_4:+67458653 Msa0866060:intron
ATATGATGTAGACCAAGATA+GGG 0.610894 5_4:-67456932 None:intergenic
TTAGAAGAATCAGAATCAGA+AGG 0.614728 5_4:-67456641 None:intergenic
AAGCCTACTGCTCCAAGTAG+TGG 0.620361 5_4:-67458804 None:intergenic
ATGCAACTTCCAACAGAGAG+AGG 0.623135 5_4:-67457305 None:intergenic
AAGCGCCTATTCAAGAAACA+TGG 0.627826 5_4:+67456306 Msa0866060:CDS
GGTGGCTTAGGATGTGCGGT+TGG 0.630689 5_4:+67455815 Msa0866060:CDS
ACTGGTAATACCTCTGCTGA+AGG 0.643612 5_4:+67458954 Msa0866060:CDS
TCATCTGTACAGACAAAGAG+AGG 0.647494 5_4:+67458840 Msa0866060:CDS
GCTTCTTTCCCTATACTGGG+AGG 0.653552 5_4:+67457003 Msa0866060:CDS
ATATGACACACCTTCAGCAG+AGG 0.656977 5_4:-67458964 None:intergenic
GACAGCACTTAGAATAACAG+TGG 0.657583 5_4:-67456687 None:intergenic
CTTTGTCAAAGGTCTCTCCA+CGG 0.660620 5_4:+67457113 Msa0866060:CDS
TTTATTTGACAATCTTCACA+AGG 0.665068 5_4:+67456963 Msa0866060:CDS
CGTACCAGCCCATAAGCTTG+TGG 0.669025 5_4:-67457330 None:intergenic
TAGCTGAAGCAATAGATCCG+TGG 0.670137 5_4:-67457130 None:intergenic
ACTTCACAACTACTAATGGT+CGG 0.672014 5_4:+67455960 Msa0866060:CDS
GAAGAAGATGGAATAATGGG+TGG 0.676584 5_4:+67455797 Msa0866060:CDS
TCTATTGCTTCAGCTAATAG+CGG 0.683916 5_4:+67457137 Msa0866060:CDS
AATGGGTGGCTTAGGATGTG+CGG 0.692887 5_4:+67455811 Msa0866060:CDS
CAGCATTGAAACCAGCAGAG+AGG 0.695496 5_4:-67456577 None:intergenic
ATACCCAACAATAAATACAG+CGG 0.708432 5_4:-67456886 None:intergenic
ACCACCAATAAAGAGAGATG+GGG 0.717265 5_4:-67457217 None:intergenic
AGGCGCTTCTCTCAACCATG+AGG 0.726086 5_4:-67456291 None:intergenic
AAGATAGGGTCAATGAAACG+AGG 0.733840 5_4:-67456918 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATCATATTATATATATC+AGG - chr5_4:67456846-67456865 None:intergenic 10.0%
!! TGATAATAACTATGAAATAT+AGG + chr5_4:67457851-67457870 Msa0866060:intron 15.0%
!! AGATTAATTTCTTATCTTAT+AGG - chr5_4:67457911-67457930 None:intergenic 15.0%
!!! GATATTATTTTATAGTATCT+TGG - chr5_4:67457945-67457964 None:intergenic 15.0%
!! CATCATACTTAAAAAAAGAA+AGG - chr5_4:67456191-67456210 None:intergenic 20.0%
!! TTCAAAATCATGATATGAAT+CGG - chr5_4:67456807-67456826 None:intergenic 20.0%
!! ATAACAAGATAATATATTGC+AGG - chr5_4:67457615-67457634 None:intergenic 20.0%
!! ATAAATCTATGAATTCAGAA+TGG + chr5_4:67458018-67458037 Msa0866060:intron 20.0%
!!! TGTTTGAAACAAATAAGAAA+AGG + chr5_4:67458238-67458257 Msa0866060:intron 20.0%
!!! GTTTGAAACAAATAAGAAAA+GGG + chr5_4:67458239-67458258 Msa0866060:intron 20.0%
!! TGTAATATATAGTAGTAACA+TGG + chr5_4:67458369-67458388 Msa0866060:intron 20.0%
!!! AAAATTTTCTCATATCATGT+GGG + chr5_4:67458395-67458414 Msa0866060:intron 20.0%
!! AGACAAATGATATAATATAC+TGG - chr5_4:67458623-67458642 None:intergenic 20.0%
!! ATGAAACAATGAATTATGTA+AGG + chr5_4:67459039-67459058 Msa0866060:CDS 20.0%
! ACTTAGGAATGATACAATTA+TGG + chr5_4:67455651-67455670 Msa0866060:five_prime_UTR 25.0%
! TATTCAAGAAACATGGAAAA+GGG + chr5_4:67456313-67456332 Msa0866060:CDS 25.0%
! TTTATTTGACAATCTTCACA+AGG + chr5_4:67456963-67456982 Msa0866060:CDS 25.0%
!!! TTTGGTATTTCTTGTTTTCT+TGG + chr5_4:67457376-67457395 Msa0866060:intron 25.0%
! CGTTAAATTAGTAAACCTTA+TGG - chr5_4:67457559-67457578 None:intergenic 25.0%
!! TATCTTGTTATCTTAGTTGA+AGG + chr5_4:67457624-67457643 Msa0866060:intron 25.0%
!! GCTTATTTCTCATAAAGAAA+AGG - chr5_4:67457654-67457673 None:intergenic 25.0%
! ATAAGTTTCCTTGTGTAATT+AGG - chr5_4:67457829-67457848 None:intergenic 25.0%
!!! TAGTCTAAGATATTTTGAGA+TGG + chr5_4:67457876-67457895 Msa0866060:intron 25.0%
!!! AGTCTAAGATATTTTGAGAT+GGG + chr5_4:67457877-67457896 Msa0866060:intron 25.0%
!!! TTTGTATCAAGTTTTATCGT+GGG - chr5_4:67457997-67458016 None:intergenic 25.0%
!!! TTTTGTATCAAGTTTTATCG+TGG - chr5_4:67457998-67458017 None:intergenic 25.0%
!!! TATGAATTCAGAATGGATTA+GGG + chr5_4:67458025-67458044 Msa0866060:intron 25.0%
! AAAACAAACTAAAACGGTAT+TGG + chr5_4:67458110-67458129 Msa0866060:intron 25.0%
! AAACAAACTAAAACGGTATT+GGG + chr5_4:67458111-67458130 Msa0866060:intron 25.0%
! ATCTTCCATGATAAAGAAAA+AGG + chr5_4:67458281-67458300 Msa0866060:intron 25.0%
!! GAAAATTTTCTCATATCATG+TGG + chr5_4:67458394-67458413 Msa0866060:intron 25.0%
!! TCAGAGTTCAAAACAAATTT+TGG + chr5_4:67458453-67458472 Msa0866060:intron 25.0%
! AGATCTATTACTTTAGTAAG+CGG - chr5_4:67459122-67459141 None:intergenic 25.0%
! ATGAGTTGTTGTTGTTATAG+TGG + chr5_4:67455764-67455783 Msa0866060:CDS 30.0%
! TTGTTGTTGTTATAGTGGAA+TGG + chr5_4:67455769-67455788 Msa0866060:CDS 30.0%
! TTCTGAATGGATTCGTAATT+CGG + chr5_4:67456057-67456076 Msa0866060:CDS 30.0%
ATAATATCTTCATGCTTGGT+TGG + chr5_4:67456082-67456101 Msa0866060:CDS 30.0%
TGTGATCAATATCAATATGC+AGG + chr5_4:67456220-67456239 Msa0866060:intron 30.0%
!! ATGAAATTCGTGATTTGTTG+TGG + chr5_4:67456246-67456265 Msa0866060:CDS 30.0%
!! TGAAATTCGTGATTTGTTGT+GGG + chr5_4:67456247-67456266 Msa0866060:CDS 30.0%
! CTTTTCCATGTTTCTTGAAT+AGG - chr5_4:67456314-67456333 None:intergenic 30.0%
CTATTCAAGAAACATGGAAA+AGG + chr5_4:67456312-67456331 Msa0866060:CDS 30.0%
ATTGCAGCTTCTATTACTTT+AGG + chr5_4:67456422-67456441 Msa0866060:CDS 30.0%
TTAGAAGAATCAGAATCAGA+AGG - chr5_4:67456644-67456663 None:intergenic 30.0%
AATAACAGTGGAAGTAGTAT+TGG - chr5_4:67456678-67456697 None:intergenic 30.0%
ATACCCAACAATAAATACAG+CGG - chr5_4:67456889-67456908 None:intergenic 30.0%
TTATTGTTGGGTATCTTATG+TGG + chr5_4:67456895-67456914 Msa0866060:CDS 30.0%
ATATGATGTAGACCAAGATA+GGG - chr5_4:67456935-67456954 None:intergenic 30.0%
TATATGATGTAGACCAAGAT+AGG - chr5_4:67456936-67456955 None:intergenic 30.0%
TATATCCTGAAATCCTCTAT+TGG + chr5_4:67457052-67457071 Msa0866060:CDS 30.0%
ATATCCTGAAATCCTCTATT+GGG + chr5_4:67457053-67457072 Msa0866060:CDS 30.0%
! ATCGTGTTTTTCTTCTCTTT+GGG + chr5_4:67457403-67457422 Msa0866060:intron 30.0%
ATTGTGAACACTGCAAATAT+AGG - chr5_4:67457499-67457518 None:intergenic 30.0%
CATAAGATAACTGAAGAGAA+AGG - chr5_4:67457587-67457606 None:intergenic 30.0%
! TGGCATTTTATCTTAGTTGA+AGG + chr5_4:67457691-67457710 Msa0866060:intron 30.0%
TTTAAATATATGCCAGTGCT+TGG - chr5_4:67457784-67457803 None:intergenic 30.0%
TTCCTTGTGTAATTAGGATT+TGG - chr5_4:67457823-67457842 None:intergenic 30.0%
!!! GTCTAAGATATTTTGAGATG+GGG + chr5_4:67457878-67457897 Msa0866060:intron 30.0%
! CTATGAATTCAGAATGGATT+AGG + chr5_4:67458024-67458043 Msa0866060:intron 30.0%
ACTGGCAAAACAAACTAAAA+CGG + chr5_4:67458104-67458123 Msa0866060:intron 30.0%
TGAAACAAATAAGAAAAGGG+AGG + chr5_4:67458242-67458261 Msa0866060:intron 30.0%
GAAACAAATAAGAAAAGGGA+GGG + chr5_4:67458243-67458262 Msa0866060:intron 30.0%
TTCCATGATAAAGAAAAAGG+AGG + chr5_4:67458284-67458303 Msa0866060:intron 30.0%
TCCATGATAAAGAAAAAGGA+GGG + chr5_4:67458285-67458304 Msa0866060:intron 30.0%
! TATTACAGACATGTTAGTCT+TGG - chr5_4:67458356-67458375 None:intergenic 30.0%
!!! ATTTGTTTTGAACTCTGAAC+TGG - chr5_4:67458451-67458470 None:intergenic 30.0%
CTTGAAAAAAGACCTAGAAA+GGG + chr5_4:67458581-67458600 Msa0866060:CDS 30.0%
! TTTGTCTTTTGCAAATGTTC+AGG + chr5_4:67458636-67458655 Msa0866060:intron 30.0%
!! CAAGAAGATATTTCTGGAAA+CGG - chr5_4:67458915-67458934 None:intergenic 30.0%
GATCTACAAGAAGATATTTC+TGG - chr5_4:67458921-67458940 None:intergenic 30.0%
AGATCAATTGAGTTATCTAC+TGG + chr5_4:67458936-67458955 Msa0866060:CDS 30.0%
TTTGAGTAAATCATGTCAAG+TGG + chr5_4:67458986-67459005 Msa0866060:CDS 30.0%
! TGTAAGGAGAACATTAGTTT+CGG + chr5_4:67459055-67459074 Msa0866060:CDS 30.0%
GATACTGATGATACTTTGAT+TGG + chr5_4:67459179-67459198 Msa0866060:CDS 30.0%
!! TTGATTGGTTTATTGACACT+TGG + chr5_4:67459194-67459213 Msa0866060:CDS 30.0%
! TTGTTGTTATAGTGGAATGG+CGG + chr5_4:67455772-67455791 Msa0866060:CDS 35.0%
! TGATGATAATGCCAACTACT+TGG - chr5_4:67455863-67455882 None:intergenic 35.0%
TGCAATAACAGTAACACGTT+CGG + chr5_4:67455898-67455917 Msa0866060:CDS 35.0%
TGTTTGAGGAAGAAGAAGAA+AGG - chr5_4:67455928-67455947 None:intergenic 35.0%
ACCATTAGTAGTTGTGAAGT+TGG - chr5_4:67455960-67455979 None:intergenic 35.0%
ACTTCACAACTACTAATGGT+CGG + chr5_4:67455960-67455979 Msa0866060:CDS 35.0%
!! CTATCTTTGCTATTGTGAAG+CGG - chr5_4:67455998-67456017 None:intergenic 35.0%
CACAATAGCAAAGATAGAGA+AGG + chr5_4:67456001-67456020 Msa0866060:CDS 35.0%
! TCTGAATGGATTCGTAATTC+GGG + chr5_4:67456058-67456077 Msa0866060:CDS 35.0%
GGGAATAATATCTTCATGCT+TGG + chr5_4:67456078-67456097 Msa0866060:CDS 35.0%
! CTGCAATAGCCTTTAAGAAA+GGG - chr5_4:67456409-67456428 None:intergenic 35.0%
TTGGAAATTCCATTGCCAAA+TGG + chr5_4:67456486-67456505 Msa0866060:CDS 35.0%
!! AGTGGAAGTAGTATTGGTAA+GGG - chr5_4:67456672-67456691 None:intergenic 35.0%
TACCCAACAATAAATACAGC+GGG - chr5_4:67456888-67456907 None:intergenic 35.0%
! AGTATAGGGAAAGAAGCTTT+TGG - chr5_4:67457000-67457019 None:intergenic 35.0%
AAAAGCTTCTTTCCCTATAC+TGG + chr5_4:67456999-67457018 Msa0866060:CDS 35.0%
AAAGCTTCTTTCCCTATACT+GGG + chr5_4:67457000-67457019 Msa0866060:CDS 35.0%
TATCCTGAAATCCTCTATTG+GGG + chr5_4:67457054-67457073 Msa0866060:CDS 35.0%
TCTATTGCTTCAGCTAATAG+CGG + chr5_4:67457137-67457156 Msa0866060:CDS 35.0%
ATAATAGCCTCCTACTAATC+CGG - chr5_4:67457196-67457215 None:intergenic 35.0%
CAAAGAGAAGAAAAACACGA+TGG - chr5_4:67457404-67457423 None:intergenic 35.0%
! CATCGTGTTTTTCTTCTCTT+TGG + chr5_4:67457402-67457421 Msa0866060:intron 35.0%
! TCGTGTTTTTCTTCTCTTTG+GGG + chr5_4:67457404-67457423 Msa0866060:intron 35.0%
!! TCTTTCTAAGATCACTTCCT+TGG + chr5_4:67457443-67457462 Msa0866060:intron 35.0%
AAGGCTCATTTGTATATCCA+AGG - chr5_4:67457463-67457482 None:intergenic 35.0%
! TATACAAATGAGCCTTTTCC+TGG + chr5_4:67457467-67457486 Msa0866060:intron 35.0%
AAATTTAGACAAGCGCCATA+AGG + chr5_4:67457541-67457560 Msa0866060:intron 35.0%
AGCTTCTCATGCATATAACT+TGG + chr5_4:67457671-67457690 Msa0866060:intron 35.0%
AAGGTTTACTCTCTATTGCT+TGG + chr5_4:67457710-67457729 Msa0866060:intron 35.0%
AGGTTTACTCTCTATTGCTT+GGG + chr5_4:67457711-67457730 Msa0866060:intron 35.0%
TGATACAAAAAACCAAGCAC+TGG + chr5_4:67457769-67457788 Msa0866060:intron 35.0%
CTCCAAATCCTAATTACACA+AGG + chr5_4:67457818-67457837 Msa0866060:intron 35.0%
!!! CTTGGTTTTGACATTTTGCT+CGG - chr5_4:67458185-67458204 None:intergenic 35.0%
AGCAAAATGTCAAAACCAAG+AGG + chr5_4:67458185-67458204 Msa0866060:intron 35.0%
! ACCCTCCTTTTTCTTTATCA+TGG - chr5_4:67458289-67458308 None:intergenic 35.0%
! TAACCTTGATAGTATCTTCC+AGG + chr5_4:67458310-67458329 Msa0866060:intron 35.0%
!! TGTTAGTCTTGGTTAGTGTA+TGG - chr5_4:67458345-67458364 None:intergenic 35.0%
TATCATGTGGGACTAGATTA+TGG + chr5_4:67458407-67458426 Msa0866060:intron 35.0%
CTATTTAATGTTGCAGCGTA+TGG + chr5_4:67458487-67458506 Msa0866060:intron 35.0%
!! CTGCTACACTTTGATTTGTT+GGG + chr5_4:67458527-67458546 Msa0866060:CDS 35.0%
GCTTGAAAAAAGACCTAGAA+AGG + chr5_4:67458580-67458599 Msa0866060:CDS 35.0%
AAATGTTCAGGAAAAGAAGC+TGG + chr5_4:67458648-67458667 Msa0866060:intron 35.0%
! CATATCAAAGTTCCTTTTGC+AGG + chr5_4:67458686-67458705 Msa0866060:CDS 35.0%
TTGAATTGACACAGGACTAT+CGG + chr5_4:67458772-67458791 Msa0866060:CDS 35.0%
CATGAAGACAAGATTTGTGA+CGG + chr5_4:67459082-67459101 Msa0866060:CDS 35.0%
! TGTTGTTATAGTGGAATGGC+GGG + chr5_4:67455773-67455792 Msa0866060:CDS 40.0%
GGGGAAGAAGATGGAATAAT+GGG + chr5_4:67455794-67455813 Msa0866060:CDS 40.0%
! GAAGAAGATGGAATAATGGG+TGG + chr5_4:67455797-67455816 Msa0866060:CDS 40.0%
GAGTTCTTCAACCAAGTAGT+TGG + chr5_4:67455849-67455868 Msa0866060:CDS 40.0%
GCAATAACAGTAACACGTTC+GGG + chr5_4:67455899-67455918 Msa0866060:CDS 40.0%
! GTTGGCGTAATTCTTGTTTG+AGG - chr5_4:67455942-67455961 None:intergenic 40.0%
GCCAACTTCACAACTACTAA+TGG + chr5_4:67455956-67455975 Msa0866060:CDS 40.0%
AGATAGAGAAGGAGAAGTTG+AGG + chr5_4:67456012-67456031 Msa0866060:CDS 40.0%
CGTCTTCTTCTTCTTCTGAA+TGG + chr5_4:67456044-67456063 Msa0866060:CDS 40.0%
!! ATTCGTGATTTGTTGTGGGA+TGG + chr5_4:67456251-67456270 Msa0866060:CDS 40.0%
!! TTCGTGATTTGTTGTGGGAT+GGG + chr5_4:67456252-67456271 Msa0866060:CDS 40.0%
AAGCGCCTATTCAAGAAACA+TGG + chr5_4:67456306-67456325 Msa0866060:CDS 40.0%
! GTAATACTTGTTCCCGCTTT+TGG + chr5_4:67456335-67456354 Msa0866060:CDS 40.0%
AACAAGAAGACCTCCAAAAG+CGG - chr5_4:67456351-67456370 None:intergenic 40.0%
GGGAATTGGAATTGGAAAGA+AGG - chr5_4:67456385-67456404 None:intergenic 40.0%
! AATAGCCTTTAAGAAAGGGC+GGG - chr5_4:67456405-67456424 None:intergenic 40.0%
! CAATAGCCTTTAAGAAAGGG+CGG - chr5_4:67456406-67456425 None:intergenic 40.0%
! GCTGCAATAGCCTTTAAGAA+AGG - chr5_4:67456410-67456429 None:intergenic 40.0%
GCTTCTATTACTTTAGGCAC+TGG + chr5_4:67456428-67456447 Msa0866060:CDS 40.0%
!! TTTAGGCACTGGTAATTCCT+TGG + chr5_4:67456439-67456458 Msa0866060:CDS 40.0%
!! TTAGGCACTGGTAATTCCTT+GGG + chr5_4:67456440-67456459 Msa0866060:CDS 40.0%
!! CAGTGGAAGTAGTATTGGTA+AGG - chr5_4:67456673-67456692 None:intergenic 40.0%
GACAGCACTTAGAATAACAG+TGG - chr5_4:67456690-67456709 None:intergenic 40.0%
!! GCTTCTGTCATTTCTGAGAT+TGG + chr5_4:67456713-67456732 Msa0866060:CDS 40.0%
CTCCCGCTGTATTTATTGTT+GGG + chr5_4:67456883-67456902 Msa0866060:CDS 40.0%
AAGATAGGGTCAATGAAACG+AGG - chr5_4:67456921-67456940 None:intergenic 40.0%
TCGTTTCATTGACCCTATCT+TGG + chr5_4:67456920-67456939 Msa0866060:CDS 40.0%
CAGATAAACCTCCCAGTATA+GGG - chr5_4:67457014-67457033 None:intergenic 40.0%
ACAGATAAACCTCCCAGTAT+AGG - chr5_4:67457015-67457034 None:intergenic 40.0%
ATACTGGGAGGTTTATCTGT+AGG + chr5_4:67457015-67457034 Msa0866060:CDS 40.0%
CAGGATATAGCAATGCTATG+AGG - chr5_4:67457041-67457060 None:intergenic 40.0%
AAACCCCAATAGAGGATTTC+AGG - chr5_4:67457060-67457079 None:intergenic 40.0%
CATTCTCAAAACCCCAATAG+AGG - chr5_4:67457068-67457087 None:intergenic 40.0%
TATGCCCCATCTCTCTTTAT+TGG + chr5_4:67457213-67457232 Msa0866060:CDS 40.0%
ACCACCAATAAAGAGAGATG+GGG - chr5_4:67457220-67457239 None:intergenic 40.0%
CACCACCAATAAAGAGAGAT+GGG - chr5_4:67457221-67457240 None:intergenic 40.0%
AACAGAGAGAGGTTAATCAC+AGG - chr5_4:67457297-67457316 None:intergenic 40.0%
TGTGATTAACCTCTCTCTGT+TGG + chr5_4:67457296-67457315 Msa0866060:CDS 40.0%
TTGCATCACCACAAGCTTAT+GGG + chr5_4:67457322-67457341 Msa0866060:CDS 40.0%
!! TGTTTTTCTTCTCTTTGGGG+TGG + chr5_4:67457407-67457426 Msa0866060:intron 40.0%
!!! GTTTTTCTTCTCTTTGGGGT+GGG + chr5_4:67457408-67457427 Msa0866060:intron 40.0%
TATAGGAATCCTCCAGGAAA+AGG - chr5_4:67457482-67457501 None:intergenic 40.0%
TGCAAATATAGGAATCCTCC+AGG - chr5_4:67457488-67457507 None:intergenic 40.0%
!! GTATCAAGTTTTATCGTGGG+TGG - chr5_4:67457994-67458013 None:intergenic 40.0%
!!! AGCACTAGTTTTGTCTCAGT+TGG - chr5_4:67458058-67458077 None:intergenic 40.0%
TACATCAGCCAAAGCTTAAC+TGG + chr5_4:67458142-67458161 Msa0866060:intron 40.0%
! GCTTTAAACTTCTGTCCTCT+TGG - chr5_4:67458203-67458222 None:intergenic 40.0%
TATCATGGAAGATGCTCTCA+AGG - chr5_4:67458274-67458293 None:intergenic 40.0%
CATCCTGGAAGATACTATCA+AGG - chr5_4:67458316-67458335 None:intergenic 40.0%
AGTGTATGGTTTCTTCATCC+TGG - chr5_4:67458331-67458350 None:intergenic 40.0%
!! GCTGCTACACTTTGATTTGT+TGG + chr5_4:67458526-67458545 Msa0866060:CDS 40.0%
TTCAGTCTCTAACCCTTTCT+AGG - chr5_4:67458596-67458615 None:intergenic 40.0%
! TCAAAGTTCCTTTTGCAGGT+TGG + chr5_4:67458690-67458709 Msa0866060:CDS 40.0%
GCTTCTGTTTGAATTGACAC+AGG + chr5_4:67458764-67458783 Msa0866060:CDS 40.0%
!! CGGATTGTTTTACCACTACT+TGG + chr5_4:67458792-67458811 Msa0866060:CDS 40.0%
TCATCTGTACAGACAAAGAG+AGG + chr5_4:67458840-67458859 Msa0866060:CDS 40.0%
AGACAAAGAGAGGTGATGAA+AGG + chr5_4:67458850-67458869 Msa0866060:CDS 40.0%
GACAAAGAGAGGTGATGAAA+GGG + chr5_4:67458851-67458870 Msa0866060:CDS 40.0%
CGTCACAAATCTTGTCTTCA+TGG - chr5_4:67459084-67459103 None:intergenic 40.0%
CATTCGAGCGTTTGGAAAAT+CGG + chr5_4:67459220-67459239 Msa0866060:CDS 40.0%
TTTGGAAAATCGGCAAAGTC+TGG + chr5_4:67459230-67459249 Msa0866060:CDS 40.0%
! GTTGTTATAGTGGAATGGCG+GGG + chr5_4:67455774-67455793 Msa0866060:CDS 45.0%
! TTGTTATAGTGGAATGGCGG+GGG + chr5_4:67455775-67455794 Msa0866060:CDS 45.0%
GGGGGAAGAAGATGGAATAA+TGG + chr5_4:67455793-67455812 Msa0866060:CDS 45.0%
!! GATGGAATAATGGGTGGCTT+AGG + chr5_4:67455803-67455822 Msa0866060:CDS 45.0%
AGAGAAGGAGAAGTTGAGGA+AGG + chr5_4:67456016-67456035 Msa0866060:CDS 45.0%
!! TGCTTGGTTGGTCTCTTAAC+AGG + chr5_4:67456094-67456113 Msa0866060:CDS 45.0%
! TTTGTTGTGGGATGGGATTC+CGG + chr5_4:67456259-67456278 Msa0866060:CDS 45.0%
!! ATACTTGTTCCCGCTTTTGG+AGG + chr5_4:67456338-67456357 Msa0866060:CDS 45.0%
ACAAGAAGACCTCCAAAAGC+GGG - chr5_4:67456350-67456369 None:intergenic 45.0%
! CTTTAAGAAAGGGCGGGAAT+TGG - chr5_4:67456399-67456418 None:intergenic 45.0%
CAATTCCCGCCCTTTCTTAA+AGG + chr5_4:67456397-67456416 Msa0866060:CDS 45.0%
GAATTTCCAATGTCGACGCT+GGG - chr5_4:67456476-67456495 None:intergenic 45.0%
GGAAGCAATCCATTTGGCAA+TGG - chr5_4:67456498-67456517 None:intergenic 45.0%
AGGAGTGGAAGCAATCCATT+TGG - chr5_4:67456504-67456523 None:intergenic 45.0%
AGTTTGGCGGAAGTGAAAAG+AGG - chr5_4:67456524-67456543 None:intergenic 45.0%
AGCGAAGAAACAACCAGCAA+CGG - chr5_4:67456603-67456622 None:intergenic 45.0%
!! GTCATTTCTGAGATTGGCCT+CGG + chr5_4:67456719-67456738 Msa0866060:CDS 45.0%
! TAGTCTGGAACTTGAAAGGC+AGG - chr5_4:67456752-67456771 None:intergenic 45.0%
! GTCGTAGTCTGGAACTTGAA+AGG - chr5_4:67456756-67456775 None:intergenic 45.0%
TCGGTAAGTTACTTACCAGC+AGG - chr5_4:67456788-67456807 None:intergenic 45.0%
GCTCCCGCTGTATTTATTGT+TGG + chr5_4:67456882-67456901 Msa0866060:CDS 45.0%
GAATCTCGACCCTTTGTCAA+AGG + chr5_4:67457102-67457121 Msa0866060:CDS 45.0%
GTGGAGAGACCTTTGACAAA+GGG - chr5_4:67457114-67457133 None:intergenic 45.0%
CTTTGTCAAAGGTCTCTCCA+CGG + chr5_4:67457113-67457132 Msa0866060:CDS 45.0%
TAGCTGAAGCAATAGATCCG+TGG - chr5_4:67457133-67457152 None:intergenic 45.0%
GCACCACCAATAAAGAGAGA+TGG - chr5_4:67457222-67457241 None:intergenic 45.0%
!! CTCTTTATTGGTGGTGCAAC+TGG + chr5_4:67457225-67457244 Msa0866060:CDS 45.0%
!! TATTGGTGGTGCAACTGGTA+TGG + chr5_4:67457230-67457249 Msa0866060:CDS 45.0%
ATGCAACTTCCAACAGAGAG+AGG - chr5_4:67457308-67457327 None:intergenic 45.0%
GTTGCATCACCACAAGCTTA+TGG + chr5_4:67457321-67457340 Msa0866060:CDS 45.0%
! ACAAATGAGCCTTTTCCTGG+AGG + chr5_4:67457470-67457489 Msa0866060:intron 45.0%
TTGCCAGTTGTCGTGAAAGT+CGG - chr5_4:67458092-67458111 None:intergenic 45.0%
TCAGCCAAAGCTTAACTGGA+AGG + chr5_4:67458146-67458165 Msa0866060:intron 45.0%
GACACCTTCCAGTTAAGCTT+TGG - chr5_4:67458153-67458172 None:intergenic 45.0%
TATGGTCCAAGCAACTTCCT+TGG + chr5_4:67458425-67458444 Msa0866060:intron 45.0%
TTTGAACTCTGAACTGGCCA+AGG - chr5_4:67458445-67458464 None:intergenic 45.0%
!! GTTCCTTTTGCAGGTTGGAA+TGG + chr5_4:67458695-67458714 Msa0866060:CDS 45.0%
GAACTGCAGTAAGTGGTACT+TGG - chr5_4:67458743-67458762 None:intergenic 45.0%
AGAAGCAGAACTGCAGTAAG+TGG - chr5_4:67458750-67458769 None:intergenic 45.0%
TTACCACTACTTGGAGCAGT+AGG + chr5_4:67458801-67458820 Msa0866060:CDS 45.0%
ACTGGTAATACCTCTGCTGA+AGG + chr5_4:67458954-67458973 Msa0866060:CDS 45.0%
ATATGACACACCTTCAGCAG+AGG - chr5_4:67458967-67458986 None:intergenic 45.0%
GGAGAGTTCAAGTAGTGTAG+AGG + chr5_4:67459007-67459026 Msa0866060:CDS 45.0%
GTCTGGAAGCGAAAATCGAA+AGG + chr5_4:67459247-67459266 Msa0866060:CDS 45.0%
!!! CTTTTATTTATTTATTTATT+TGG + chr5_4:67457358-67457377 Msa0866060:intron 5.0%
AATGGGTGGCTTAGGATGTG+CGG + chr5_4:67455811-67455830 Msa0866060:CDS 50.0%
TTAGGATGTGCGGTTGGAGT+CGG + chr5_4:67455821-67455840 Msa0866060:CDS 50.0%
! AACCATGAGGCACCTCTATC+CGG - chr5_4:67456281-67456300 None:intergenic 50.0%
GAAAGGGCGGGAATTGGAAT+TGG - chr5_4:67456393-67456412 None:intergenic 50.0%
TGGTAATTCCTTGGGTCCTG+AGG + chr5_4:67456448-67456467 Msa0866060:CDS 50.0%
GGTAATTCCTTGGGTCCTGA+GGG + chr5_4:67456449-67456468 Msa0866060:CDS 50.0%
GGAATTTCCAATGTCGACGC+TGG - chr5_4:67456477-67456496 None:intergenic 50.0%
ATTGAAACCAGCAGAGAGGC+CGG - chr5_4:67456576-67456595 None:intergenic 50.0%
! CAGCATTGAAACCAGCAGAG+AGG - chr5_4:67456580-67456599 None:intergenic 50.0%
TCGCTGTTGAGTCTGTCTTG+TGG + chr5_4:67456618-67456637 Msa0866060:CDS 50.0%
GGAGAACGAAAGTCGTAGTC+TGG - chr5_4:67456767-67456786 None:intergenic 50.0%
TACGACTTTCGTTCTCCTGC+TGG + chr5_4:67456770-67456789 Msa0866060:CDS 50.0%
GACAATCTTCACAAGGCCAC+TGG + chr5_4:67456970-67456989 Msa0866060:CDS 50.0%
! AGAAGCTTTTGGCATGCCAG+TGG - chr5_4:67456989-67457008 None:intergenic 50.0%
GCTTCTTTCCCTATACTGGG+AGG + chr5_4:67457003-67457022 Msa0866060:CDS 50.0%
CGTGGAGAGACCTTTGACAA+AGG - chr5_4:67457115-67457134 None:intergenic 50.0%
ACTTCTCTCTGTCGTGCTTC+CGG + chr5_4:67457174-67457193 Msa0866060:CDS 50.0%
!! TGTCGTGCTTCCGGATTAGT+AGG + chr5_4:67457183-67457202 Msa0866060:CDS 50.0%
GCCCCATCTCTCTTTATTGG+TGG + chr5_4:67457216-67457235 Msa0866060:CDS 50.0%
GGTGCAACTGGTATGGCTTA+TGG + chr5_4:67457237-67457256 Msa0866060:CDS 50.0%
ATCACCACAAGCTTATGGGC+TGG + chr5_4:67457326-67457345 Msa0866060:CDS 50.0%
! CAACCGACTTTCACGACAAC+TGG + chr5_4:67458086-67458105 Msa0866060:intron 50.0%
AACTGGCCAAGGAAGTTGCT+TGG - chr5_4:67458434-67458453 None:intergenic 50.0%
CAGCGTATGGTTGTCTATGC+TGG + chr5_4:67458500-67458519 Msa0866060:intron 50.0%
TTCAGGAAAAGAAGCTGGCG+TGG + chr5_4:67458653-67458672 Msa0866060:intron 50.0%
CAGCCATTCCAACCTGCAAA+AGG - chr5_4:67458701-67458720 None:intergenic 50.0%
AAGCCTACTGCTCCAAGTAG+TGG - chr5_4:67458807-67458826 None:intergenic 50.0%
GAGCAGTAGGCTTGTCTTCA+TGG + chr5_4:67458814-67458833 Msa0866060:CDS 50.0%
CTTGGAGACATTCGAGCGTT+TGG + chr5_4:67459212-67459231 Msa0866060:CDS 50.0%
TGGGATGGGATTCCGGATAG+AGG + chr5_4:67456266-67456285 Msa0866060:CDS 55.0%
!! TTCCGGATAGAGGTGCCTCA+TGG + chr5_4:67456276-67456295 Msa0866060:CDS 55.0%
AGGCGCTTCTCTCAACCATG+AGG - chr5_4:67456294-67456313 None:intergenic 55.0%
GGCGGAAGTGAAAAGAGGAG+TGG - chr5_4:67456519-67456538 None:intergenic 55.0%
GGTTTCAATGCTGCCGTTGC+TGG + chr5_4:67456587-67456606 Msa0866060:CDS 55.0%
!! CGTGCTTCCGGATTAGTAGG+AGG + chr5_4:67457186-67457205 Msa0866060:CDS 55.0%
CGTACCAGCCCATAAGCTTG+TGG - chr5_4:67457333-67457352 None:intergenic 55.0%
GAAAAGAAGCTGGCGTGGCA+CGG + chr5_4:67458658-67458677 Msa0866060:CDS 55.0%
! GGAATGGCGGGGGAAGAAGA+TGG + chr5_4:67455785-67455804 Msa0866060:CDS 60.0%
GGTGGCTTAGGATGTGCGGT+TGG + chr5_4:67455815-67455834 Msa0866060:CDS 60.0%
TCGGAGGGGAAGGAGTTTGG+CGG - chr5_4:67456537-67456556 None:intergenic 60.0%
AGCTCGGAGGGGAAGGAGTT+TGG - chr5_4:67456540-67456559 None:intergenic 60.0%
AGCAGATCCAGCAGCTCGGA+GGG - chr5_4:67456552-67456571 None:intergenic 60.0%
GAAAGGCAGGTTCAGAGCCG+AGG - chr5_4:67456739-67456758 None:intergenic 60.0%
GGAATGGCTGCGACTCTTGC+AGG + chr5_4:67458711-67458730 Msa0866060:CDS 60.0%
ATGTCGACGCTGGGACCCTC+AGG - chr5_4:67456467-67456486 None:intergenic 65.0%
!! GAGGGTCCCAGCGTCGACAT+TGG + chr5_4:67456467-67456486 Msa0866060:CDS 65.0%
ATCCAGCAGCTCGGAGGGGA+AGG - chr5_4:67456547-67456566 None:intergenic 65.0%
GCAGATCCAGCAGCTCGGAG+GGG - chr5_4:67456551-67456570 None:intergenic 65.0%
CAGCAGATCCAGCAGCTCGG+AGG - chr5_4:67456553-67456572 None:intergenic 65.0%
CGGCAGCAGATCCAGCAGCT+CGG - chr5_4:67456556-67456575 None:intergenic 65.0%
CGAGCTGCTGGATCTGCTGC+CGG + chr5_4:67456554-67456573 Msa0866060:CDS 65.0%
GCTGGGACCCTCAGGACCCA+AGG - chr5_4:67456459-67456478 None:intergenic 70.0%
CTCCTTCCCCTCCGAGCTGC+TGG + chr5_4:67456542-67456561 Msa0866060:CDS 70.0%
TCTGCTGCCGGCCTCTCTGC+TGG + chr5_4:67456566-67456585 Msa0866060:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 67455641 67459295 67455641 ID=Msa0866060;Name=Msa0866060
chr5_4 mRNA 67455641 67459295 67455641 ID=Msa0866060-mRNA-1;Parent=Msa0866060;Name=Msa0866060-mRNA-1;_AED=0.17;_eAED=0.21;_QI=123|0.5|0.6|1|1|1|5|0|711
chr5_4 exon 67455641 67456144 67455641 ID=Msa0866060-mRNA-1:exon:21265;Parent=Msa0866060-mRNA-1
chr5_4 exon 67456242 67456791 67456242 ID=Msa0866060-mRNA-1:exon:21266;Parent=Msa0866060-mRNA-1
chr5_4 exon 67456881 67457347 67456881 ID=Msa0866060-mRNA-1:exon:21267;Parent=Msa0866060-mRNA-1
chr5_4 exon 67458503 67458602 67458503 ID=Msa0866060-mRNA-1:exon:21268;Parent=Msa0866060-mRNA-1
chr5_4 exon 67458658 67459295 67458658 ID=Msa0866060-mRNA-1:exon:21269;Parent=Msa0866060-mRNA-1
chr5_4 five_prime_UTR 67455641 67455763 67455641 ID=Msa0866060-mRNA-1:five_prime_utr;Parent=Msa0866060-mRNA-1
chr5_4 CDS 67455764 67456144 67455764 ID=Msa0866060-mRNA-1:cds;Parent=Msa0866060-mRNA-1
chr5_4 CDS 67456242 67456791 67456242 ID=Msa0866060-mRNA-1:cds;Parent=Msa0866060-mRNA-1
chr5_4 CDS 67456881 67457347 67456881 ID=Msa0866060-mRNA-1:cds;Parent=Msa0866060-mRNA-1
chr5_4 CDS 67458503 67458602 67458503 ID=Msa0866060-mRNA-1:cds;Parent=Msa0866060-mRNA-1
chr5_4 CDS 67458658 67459295 67458658 ID=Msa0866060-mRNA-1:cds;Parent=Msa0866060-mRNA-1
Gene Sequence

>Msa0866060

ATGAGTTGTTGTTGTTATAGTGGAATGGCGGGGGAAGAAGATGGAATAATGGGTGGCTTAGGATGTGCGGTTGGAGTCGGAGTGAGAGTTCTTCAACCAAGTAGTTGGCATTATCATCATCATCATCATCTAGCTGCAATAACAGTAACACGTTCGGGATTCCTTTCTTCTTCTTCCTCAAACAAGAATTACGCCAACTTCACAACTACTAATGGTCGGTGTCGTCGTGTGCCGCTTCACAATAGCAAAGATAGAGAAGGAGAAGTTGAGGAAGGAGTTTCGTCTTCTTCTTCTTCTGAATGGATTCGTAATTCGGGAATAATATCTTCATGCTTGGTTGGTCTCTTAACAGGTGTTGCAGTCGTGCTCTTCAACAATGTTGTTCATGAAATTCGTGATTTGTTGTGGGATGGGATTCCGGATAGAGGTGCCTCATGGTTGAGAGAAGCGCCTATTCAAGAAACATGGAAAAGGGTAATACTTGTTCCCGCTTTTGGAGGTCTTCTTGTTTCTCTTCTCAACCTTCTTTCCAATTCCAATTCCCGCCCTTTCTTAAAGGCTATTGCAGCTTCTATTACTTTAGGCACTGGTAATTCCTTGGGTCCTGAGGGTCCCAGCGTCGACATTGGAAATTCCATTGCCAAATGGATTGCTTCCACTCCTCTTTTCACTTCCGCCAAACTCCTTCCCCTCCGAGCTGCTGGATCTGCTGCCGGCCTCTCTGCTGGTTTCAATGCTGCCGTTGCTGGTTGTTTCTTCGCTGTTGAGTCTGTCTTGTGGCCTTCTGATTCTGATTCTTCTAATTTATCCCTTACCAATACTACTTCCACTGTTATTCTAAGTGCTGTCATTGCTTCTGTCATTTCTGAGATTGGCCTCGGCTCTGAACCTGCCTTTCAAGTTCCAGACTACGACTTTCGTTCTCCTGCTGAGCTCCCGCTGTATTTATTGTTGGGTATCTTATGTGGCCTCGTTTCATTGACCCTATCTTGGTCTACATCATATATGCTCACTTTATTTGACAATCTTCACAAGGCCACTGGCATGCCAAAAGCTTCTTTCCCTATACTGGGAGGTTTATCTGTAGGCCTCATAGCATTGCTATATCCTGAAATCCTCTATTGGGGTTTTGAGAATGTTGACATTTTGTTAGAATCTCGACCCTTTGTCAAAGGTCTCTCCACGGATCTATTGCTTCAGCTAATAGCGGTCAAGATAGTTACAACTTCTCTCTGTCGTGCTTCCGGATTAGTAGGAGGCTATTATGCCCCATCTCTCTTTATTGGTGGTGCAACTGGTATGGCTTATGGAAAATTAATTGCTTTCGCTGTTGCTCACTCTAATCCTGTGATTAACCTCTCTCTGTTGGAAGTTGCATCACCACAAGCTTATGGGCTGCGTATGGTTGTCTATGCTGGAATGCTGCTACACTTTGATTTGTTGGGTCAGAATAAGACTTGTAAGAATATGTTTCAGCTTGAAAAAAGACCTAGAAAGGGAAAAGAAGCTGGCGTGGCACGGATGATCATATCAAAGTTCCTTTTGCAGGTTGGAATGGCTGCGACTCTTGCAGGTGTTTGCCAAGTACCACTTACTGCAGTTCTGCTTCTGTTTGAATTGACACAGGACTATCGGATTGTTTTACCACTACTTGGAGCAGTAGGCTTGTCTTCATGGATTTCATCTGTACAGACAAAGAGAGGTGATGAAAGGGATAAAGAAAAGCTGAAGATACAAAACTCAAATTCTTCTCCGTTTCCAGAAATATCTTCTTGTAGATCAATTGAGTTATCTACTGGTAATACCTCTGCTGAAGGTGTGTCATATTTGAGTAAATCATGTCAAGTGGAGAGTTCAAGTAGTGTAGAGGATAATAATGATGAAACAATGAATTATGTAAGGAGAACATTAGTTTCGGAAGCCATGAAGACAAGATTTGTGACGGTTTCAATGTGCACACCGCTTACTAAAGTAATAGATCTCATGCTCGCAGAGAAACAGTCTTGTGCAGTAATTGTTGATACTGATGATACTTTGATTGGTTTATTGACACTTGGAGACATTCGAGCGTTTGGAAAATCGGCAAAGTCTGGAAGCGAAAATCGAAAGGTACAAGAAATTTTAATCTCAGTTTGA

Protein sequence

>Msa0866060

MSCCCYSGMAGEEDGIMGGLGCAVGVGVRVLQPSSWHYHHHHHLAAITVTRSGFLSSSSSNKNYANFTTTNGRCRRVPLHNSKDREGEVEEGVSSSSSSEWIRNSGIISSCLVGLLTGVAVVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKRVILVPAFGGLLVSLLNLLSNSNSRPFLKAIAASITLGTGNSLGPEGPSVDIGNSIAKWIASTPLFTSAKLLPLRAAGSAAGLSAGFNAAVAGCFFAVESVLWPSDSDSSNLSLTNTTSTVILSAVIASVISEIGLGSEPAFQVPDYDFRSPAELPLYLLLGILCGLVSLTLSWSTSYMLTLFDNLHKATGMPKASFPILGGLSVGLIALLYPEILYWGFENVDILLESRPFVKGLSTDLLLQLIAVKIVTTSLCRASGLVGGYYAPSLFIGGATGMAYGKLIAFAVAHSNPVINLSLLEVASPQAYGLRMVVYAGMLLHFDLLGQNKTCKNMFQLEKRPRKGKEAGVARMIISKFLLQVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGLSSWISSVQTKRGDERDKEKLKIQNSNSSPFPEISSCRSIELSTGNTSAEGVSYLSKSCQVESSSSVEDNNDETMNYVRRTLVSEAMKTRFVTVSMCTPLTKVIDLMLAEKQSCAVIVDTDDTLIGLLTLGDIRAFGKSAKSGSENRKVQEILISV*