Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701590 | XP_003629659.1 | 94.118 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 1.40e-96 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701590 | G7LHU1 | 94.118 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 6.67e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054690 | Msa0701590 | 0.818622 | 1.780885e-52 | -8.615850e-47 |
| Msa0077340 | Msa0701590 | 0.817757 | 2.795028e-52 | -8.615850e-47 |
| Msa0077560 | Msa0701590 | 0.801644 | 8.168661e-49 | -8.615850e-47 |
| Msa0098040 | Msa0701590 | 0.803990 | 2.677068e-49 | -8.615850e-47 |
| Msa0618070 | Msa0701590 | 0.945839 | 1.436883e-104 | -8.615850e-47 |
| Msa0626450 | Msa0701590 | 0.812993 | 3.205884e-51 | -8.615850e-47 |
| Msa0626490 | Msa0701590 | 0.810812 | 9.567736e-51 | -8.615850e-47 |
| Msa0651550 | Msa0701590 | 0.803383 | 3.577851e-49 | -8.615850e-47 |
| Msa0652770 | Msa0701590 | 0.817004 | 4.129327e-52 | -8.615850e-47 |
| Msa0664600 | Msa0701590 | 0.810571 | 1.078728e-50 | -8.615850e-47 |
| Msa0701590 | Msa0795870 | 0.808625 | 2.824519e-50 | -8.615850e-47 |
| Msa0701590 | Msa0833650 | 0.814817 | 1.269730e-51 | -8.615850e-47 |
| Msa0701590 | Msa0945190 | 0.810179 | 1.310817e-50 | -8.615850e-47 |
| Msa0701590 | Msa1042160 | 0.803055 | 4.184130e-49 | -8.615850e-47 |
| Msa0701590 | Msa1044680 | 0.815371 | 9.568037e-52 | -8.615850e-47 |
| Msa0701590 | Msa1132840 | 0.817133 | 3.862932e-52 | -8.615850e-47 |
| Msa0701590 | Msa1160920 | 0.803898 | 2.798341e-49 | -8.615850e-47 |
| Msa0701590 | Msa1186020 | 0.806442 | 8.207971e-50 | -8.615850e-47 |
| Msa0701590 | Msa1359690 | 0.816669 | 4.909829e-52 | -8.615850e-47 |
| Msa0701590 | Msa1405460 | 0.817648 | 2.957410e-52 | -8.615850e-47 |
| Msa0701590 | Msa1412000 | 0.810275 | 1.250045e-50 | -8.615850e-47 |
| Msa0701590 | Msa1440960 | 0.804226 | 2.391290e-49 | -8.615850e-47 |
| Msa0125360 | Msa0701590 | 0.805540 | 1.270672e-49 | -8.615850e-47 |
| Msa0244640 | Msa0701590 | 0.807627 | 4.609483e-50 | -8.615850e-47 |
| Msa0307270 | Msa0701590 | 0.801432 | 9.029539e-49 | -8.615850e-47 |
| Msa0315980 | Msa0701590 | 0.807482 | 4.947291e-50 | -8.615850e-47 |
| Msa0529030 | Msa0701590 | 0.816468 | 5.444596e-52 | -8.615850e-47 |
| Msa0565090 | Msa0701590 | 0.871708 | 5.560938e-67 | -8.615850e-47 |
| Msa0580370 | Msa0701590 | 0.820065 | 8.351489e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701590 | MtrunA17_Chr8g0379441 | 94.118 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 1.29e-100 | 286 |
| Msa0701590 | MtrunA17_Chr8g0379451 | 71.951 | 82 | 23 | 0 | 89 | 170 | 1 | 82 | 6.70e-36 | 120 |
| Msa0701590 | MtrunA17_Chr5g0437991 | 35.669 | 157 | 86 | 7 | 1 | 154 | 25 | 169 | 3.04e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701590 | AT1G29270.1 | 38.365 | 159 | 88 | 4 | 1 | 156 | 1 | 152 | 5.58e-26 | 97.4 |
| Msa0701590 | AT1G29270.2 | 41.085 | 129 | 67 | 3 | 30 | 156 | 7 | 128 | 7.12e-24 | 91.3 |
| Msa0701590 | AT2G40435.1 | 35.669 | 157 | 86 | 8 | 1 | 152 | 1 | 147 | 1.08e-12 | 62.8 |
Find 39 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAAAAGCCTCTAAAAT+TGG | 0.235711 | 4_4:+72999525 | None:intergenic |
| TAGAAAAGTACTCTTGTTAA+TGG | 0.243551 | 4_4:+72999854 | None:intergenic |
| GCAAGAGTTTCATGTGAAAA+TGG | 0.245398 | 4_4:-72999480 | Msa0701590:CDS |
| ATGTTAAGATAGAGAAAATA+AGG | 0.252575 | 4_4:-72999602 | Msa0701590:CDS |
| GACATGTTTGGATGTTTATA+CGG | 0.283042 | 4_4:-72999105 | Msa0701590:three_prime_UTR |
| AGTGAAACCAAACATAAATT+AGG | 0.299754 | 4_4:+72999150 | None:intergenic |
| ACTCTCTTCTTGCGGCTATC+AGG | 0.318826 | 4_4:+72999778 | None:intergenic |
| TTCTCATCCTAATTTATGTT+TGG | 0.329997 | 4_4:-72999157 | Msa0701590:three_prime_UTR |
| GAAGCACTTCTAAAAGCTAT+TGG | 0.338458 | 4_4:-72999396 | Msa0701590:CDS |
| GACATTATTCAATAAGCTAA+TGG | 0.375889 | 4_4:+72999755 | None:intergenic |
| AAACTAAATAAATTTACCTT+TGG | 0.379235 | 4_4:-72999080 | Msa0701590:three_prime_UTR |
| AATATTAGAGATGGCTTGTA+AGG | 0.412524 | 4_4:-73000138 | Msa0701590:exon |
| GGATTAGAAGCTACAAATCA+TGG | 0.413552 | 4_4:+72999057 | None:intergenic |
| TGTTAAGATAGAGAAAATAA+GGG | 0.418872 | 4_4:-72999601 | Msa0701590:CDS |
| CTTGTTAATGGAATTTCTGT+TGG | 0.425108 | 4_4:+72999866 | None:intergenic |
| TGGCTTGTAAGGTGCAGAAA+AGG | 0.441174 | 4_4:-73000127 | Msa0701590:CDS |
| TCACTTAAGATGTAATCAAT+TGG | 0.452566 | 4_4:-72999132 | Msa0701590:three_prime_UTR |
| CATTATTGTTGGAGTTGGTA+AGG | 0.458218 | 4_4:+73000069 | None:intergenic |
| TGGAAAGCAGAGTGGTGAAA+AGG | 0.477572 | 4_4:-72999376 | Msa0701590:CDS |
| GTAAAGGTCACATGTGAGAA+AGG | 0.513294 | 4_4:-72999564 | Msa0701590:CDS |
| GGAAAGCAGAGTGGTGAAAA+GGG | 0.519153 | 4_4:-72999375 | Msa0701590:CDS |
| GAGGATGAAAATCTTGATGT+TGG | 0.539252 | 4_4:-72999429 | Msa0701590:CDS |
| TTCTATGGAAGCTATTATTG+TGG | 0.540454 | 4_4:-72999454 | Msa0701590:CDS |
| GGAAGCTATTATTGTGGCTG+AGG | 0.546345 | 4_4:-72999448 | Msa0701590:CDS |
| GGCTTGTAAGGTGCAGAAAA+GGG | 0.547566 | 4_4:-73000126 | Msa0701590:CDS |
| TATGTAATAGTATTGTTGAA+TGG | 0.555192 | 4_4:-72999231 | Msa0701590:three_prime_UTR |
| AAAGCAGTAAATATTAGAGA+TGG | 0.580276 | 4_4:-73000147 | Msa0701590:exon |
| TGAGAAAGGAGGTGACAAGT+TGG | 0.586233 | 4_4:-72999550 | Msa0701590:CDS |
| GAATAATGTCTATGATAACA+AGG | 0.596304 | 4_4:-72999742 | Msa0701590:intron |
| CAACATTCACAAATCACAAG+AGG | 0.597444 | 4_4:-73000176 | None:intergenic |
| GTTAAGATAGAGAAAATAAG+GGG | 0.609952 | 4_4:-72999600 | Msa0701590:CDS |
| AAGCTACAAATCATGGCCAA+AGG | 0.621786 | 4_4:+72999064 | None:intergenic |
| AGTATTGTTGAATGGTGACA+TGG | 0.624222 | 4_4:-72999223 | Msa0701590:three_prime_UTR |
| GCTAATGGACTCTCTTCTTG+CGG | 0.625040 | 4_4:+72999770 | None:intergenic |
| AAGATAGAGAAAATAAGGGG+AGG | 0.627338 | 4_4:-72999597 | Msa0701590:CDS |
| AGAGATGTGTGTGAATGTTG+AGG | 0.643020 | 4_4:-72999505 | Msa0701590:CDS |
| AAAGCTATTGGAAAGCAGAG+TGG | 0.675693 | 4_4:-72999384 | Msa0701590:CDS |
| AAGGTCACATGTGAGAAAGG+AGG | 0.686761 | 4_4:-72999561 | Msa0701590:CDS |
| GTATTGTTGAATGGTGACAT+GGG | 0.693521 | 4_4:-72999222 | Msa0701590:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTTTTTTATTATAAC+AGG | - | chr4_4:72999566-72999585 | Msa0701590:CDS | 10.0% |
| !!! | ATGTTTTTTTTTATTATAAC+AGG | - | chr4_4:72999566-72999585 | Msa0701590:CDS | 10.0% |
| !!! | TGTTAATTTTACATTATTGT+TGG | + | chr4_4:72999136-72999155 | None:intergenic | 15.0% |
| !! | GAATGTAAAAAAAGAAAAAA+AGG | + | chr4_4:72999165-72999184 | None:intergenic | 15.0% |
| !! | AAACTAAATAAATTTACCTT+TGG | - | chr4_4:73000111-73000130 | Msa0701590:CDS | 15.0% |
| !!! | TGTTAATTTTACATTATTGT+TGG | + | chr4_4:72999136-72999155 | None:intergenic | 15.0% |
| !! | GAATGTAAAAAAAGAAAAAA+AGG | + | chr4_4:72999165-72999184 | None:intergenic | 15.0% |
| !! | AAACTAAATAAATTTACCTT+TGG | - | chr4_4:73000111-73000130 | Msa0701590:CDS | 15.0% |
| !! | TCAGTGGAAAAAAATAATAA+TGG | + | chr4_4:72999196-72999215 | None:intergenic | 20.0% |
| !! | TAATATTTATATATAGGCCT+TGG | + | chr4_4:72999524-72999543 | None:intergenic | 20.0% |
| !!! | AAAAACATGTTATTTTTGCT+TGG | + | chr4_4:72999554-72999573 | None:intergenic | 20.0% |
| !! | ATGTTAAGATAGAGAAAATA+AGG | - | chr4_4:72999589-72999608 | Msa0701590:CDS | 20.0% |
| !! | TGTTAAGATAGAGAAAATAA+GGG | - | chr4_4:72999590-72999609 | Msa0701590:CDS | 20.0% |
| !!! | AAATATGTAAAAACTTGTTG+AGG | + | chr4_4:72999919-72999938 | None:intergenic | 20.0% |
| !! | TATGTAATAGTATTGTTGAA+TGG | - | chr4_4:72999960-72999979 | Msa0701590:intron | 20.0% |
| !!! | TAAATATTGTTTTGAAAGCT+TGG | - | chr4_4:72999997-73000016 | Msa0701590:intron | 20.0% |
| !! | TCAGTGGAAAAAAATAATAA+TGG | + | chr4_4:72999196-72999215 | None:intergenic | 20.0% |
| !! | TAATATTTATATATAGGCCT+TGG | + | chr4_4:72999524-72999543 | None:intergenic | 20.0% |
| !!! | AAAAACATGTTATTTTTGCT+TGG | + | chr4_4:72999554-72999573 | None:intergenic | 20.0% |
| !! | ATGTTAAGATAGAGAAAATA+AGG | - | chr4_4:72999589-72999608 | Msa0701590:CDS | 20.0% |
| !! | TGTTAAGATAGAGAAAATAA+GGG | - | chr4_4:72999590-72999609 | Msa0701590:CDS | 20.0% |
| !!! | AAATATGTAAAAACTTGTTG+AGG | + | chr4_4:72999919-72999938 | None:intergenic | 20.0% |
| !! | TATGTAATAGTATTGTTGAA+TGG | - | chr4_4:72999960-72999979 | Msa0701590:intron | 20.0% |
| !!! | TAAATATTGTTTTGAAAGCT+TGG | - | chr4_4:72999997-73000016 | Msa0701590:intron | 20.0% |
| ! | AAAGCAGTAAATATTAGAGA+TGG | - | chr4_4:72999044-72999063 | Msa0701590:three_prime_UTR | 25.0% |
| !! | TTTTACATTATTGTTGGAGT+TGG | + | chr4_4:72999130-72999149 | None:intergenic | 25.0% |
| ! | GATTAAATTTGTGAAATCAG+TGG | + | chr4_4:72999212-72999231 | None:intergenic | 25.0% |
| !!! | TTGTTACTTGTTTGTTTTGA+AGG | - | chr4_4:72999302-72999321 | Msa0701590:three_prime_UTR | 25.0% |
| !!! | TAGAAAAGTACTCTTGTTAA+TGG | + | chr4_4:72999340-72999359 | None:intergenic | 25.0% |
| ! | GACATTATTCAATAAGCTAA+TGG | + | chr4_4:72999439-72999458 | None:intergenic | 25.0% |
| ! | GAATAATGTCTATGATAACA+AGG | - | chr4_4:72999449-72999468 | Msa0701590:CDS | 25.0% |
| ! | TATAGAAAAACACAAAACCA+AGG | - | chr4_4:72999504-72999523 | Msa0701590:CDS | 25.0% |
| ! | GTTAAGATAGAGAAAATAAG+GGG | - | chr4_4:72999591-72999610 | Msa0701590:CDS | 25.0% |
| !!! | ATGTGAAAATGGATTTTCTA+TGG | - | chr4_4:72999722-72999741 | Msa0701590:intron | 25.0% |
| ! | TTCTCATCCTAATTTATGTT+TGG | - | chr4_4:73000034-73000053 | Msa0701590:intron | 25.0% |
| ! | AGTGAAACCAAACATAAATT+AGG | + | chr4_4:73000044-73000063 | None:intergenic | 25.0% |
| ! | TCACTTAAGATGTAATCAAT+TGG | - | chr4_4:73000059-73000078 | Msa0701590:intron | 25.0% |
| !! | TGAGTGTAAAAATCACATTT+TGG | + | chr4_4:73000158-73000177 | None:intergenic | 25.0% |
| ! | AAAGCAGTAAATATTAGAGA+TGG | - | chr4_4:72999044-72999063 | Msa0701590:three_prime_UTR | 25.0% |
| !! | TTTTACATTATTGTTGGAGT+TGG | + | chr4_4:72999130-72999149 | None:intergenic | 25.0% |
| ! | GATTAAATTTGTGAAATCAG+TGG | + | chr4_4:72999212-72999231 | None:intergenic | 25.0% |
| !!! | TTGTTACTTGTTTGTTTTGA+AGG | - | chr4_4:72999302-72999321 | Msa0701590:three_prime_UTR | 25.0% |
| !!! | TAGAAAAGTACTCTTGTTAA+TGG | + | chr4_4:72999340-72999359 | None:intergenic | 25.0% |
| ! | GACATTATTCAATAAGCTAA+TGG | + | chr4_4:72999439-72999458 | None:intergenic | 25.0% |
| ! | GAATAATGTCTATGATAACA+AGG | - | chr4_4:72999449-72999468 | Msa0701590:CDS | 25.0% |
| ! | TATAGAAAAACACAAAACCA+AGG | - | chr4_4:72999504-72999523 | Msa0701590:CDS | 25.0% |
| ! | GTTAAGATAGAGAAAATAAG+GGG | - | chr4_4:72999591-72999610 | Msa0701590:CDS | 25.0% |
| !!! | ATGTGAAAATGGATTTTCTA+TGG | - | chr4_4:72999722-72999741 | Msa0701590:intron | 25.0% |
| ! | TTCTCATCCTAATTTATGTT+TGG | - | chr4_4:73000034-73000053 | Msa0701590:intron | 25.0% |
| ! | AGTGAAACCAAACATAAATT+AGG | + | chr4_4:73000044-73000063 | None:intergenic | 25.0% |
| ! | TCACTTAAGATGTAATCAAT+TGG | - | chr4_4:73000059-73000078 | Msa0701590:intron | 25.0% |
| !! | TGAGTGTAAAAATCACATTT+TGG | + | chr4_4:73000158-73000177 | None:intergenic | 25.0% |
| ! | AATATTAGAGATGGCTTGTA+AGG | - | chr4_4:72999053-72999072 | Msa0701590:three_prime_UTR | 30.0% |
| CTTGTTAATGGAATTTCTGT+TGG | + | chr4_4:72999328-72999347 | None:intergenic | 30.0% | |
| !! | TCTTCAAAAGCCTCTAAAAT+TGG | + | chr4_4:72999669-72999688 | None:intergenic | 30.0% |
| TTCTATGGAAGCTATTATTG+TGG | - | chr4_4:72999737-72999756 | Msa0701590:intron | 30.0% | |
| !!! | TCAATTGGTTTTGACATGTT+TGG | - | chr4_4:73000074-73000093 | Msa0701590:CDS | 30.0% |
| GACATGTTTGGATGTTTATA+CGG | - | chr4_4:73000086-73000105 | Msa0701590:CDS | 30.0% | |
| TATTATCCTCTTGTGATTTG+TGG | + | chr4_4:72999024-72999043 | None:intergenic | 30.0% | |
| ! | AATATTAGAGATGGCTTGTA+AGG | - | chr4_4:72999053-72999072 | Msa0701590:three_prime_UTR | 30.0% |
| CTTGTTAATGGAATTTCTGT+TGG | + | chr4_4:72999328-72999347 | None:intergenic | 30.0% | |
| !! | TCTTCAAAAGCCTCTAAAAT+TGG | + | chr4_4:72999669-72999688 | None:intergenic | 30.0% |
| TTCTATGGAAGCTATTATTG+TGG | - | chr4_4:72999737-72999756 | Msa0701590:intron | 30.0% | |
| !!! | TCAATTGGTTTTGACATGTT+TGG | - | chr4_4:73000074-73000093 | Msa0701590:CDS | 30.0% |
| GACATGTTTGGATGTTTATA+CGG | - | chr4_4:73000086-73000105 | Msa0701590:CDS | 30.0% | |
| !! | CATTATTGTTGGAGTTGGTA+AGG | + | chr4_4:72999125-72999144 | None:intergenic | 35.0% |
| AAGATAGAGAAAATAAGGGG+AGG | - | chr4_4:72999594-72999613 | Msa0701590:CDS | 35.0% | |
| ! | AATAAGGGGAGGAACTTTTA+TGG | - | chr4_4:72999605-72999624 | Msa0701590:CDS | 35.0% |
| !!! | CAAGTTGGTTCCAATTTTAG+AGG | - | chr4_4:72999656-72999675 | Msa0701590:intron | 35.0% |
| GCAAGAGTTTCATGTGAAAA+TGG | - | chr4_4:72999711-72999730 | Msa0701590:intron | 35.0% | |
| GAGGATGAAAATCTTGATGT+TGG | - | chr4_4:72999762-72999781 | Msa0701590:CDS | 35.0% | |
| ! | GAAGCACTTCTAAAAGCTAT+TGG | - | chr4_4:72999795-72999814 | Msa0701590:CDS | 35.0% |
| AGTATTGTTGAATGGTGACA+TGG | - | chr4_4:72999968-72999987 | Msa0701590:intron | 35.0% | |
| GTATTGTTGAATGGTGACAT+GGG | - | chr4_4:72999969-72999988 | Msa0701590:intron | 35.0% | |
| GGATTAGAAGCTACAAATCA+TGG | + | chr4_4:73000137-73000156 | None:intergenic | 35.0% | |
| !! | CATTATTGTTGGAGTTGGTA+AGG | + | chr4_4:72999125-72999144 | None:intergenic | 35.0% |
| AAGATAGAGAAAATAAGGGG+AGG | - | chr4_4:72999594-72999613 | Msa0701590:CDS | 35.0% | |
| ! | AATAAGGGGAGGAACTTTTA+TGG | - | chr4_4:72999605-72999624 | Msa0701590:CDS | 35.0% |
| !!! | CAAGTTGGTTCCAATTTTAG+AGG | - | chr4_4:72999656-72999675 | Msa0701590:intron | 35.0% |
| GCAAGAGTTTCATGTGAAAA+TGG | - | chr4_4:72999711-72999730 | Msa0701590:intron | 35.0% | |
| GAGGATGAAAATCTTGATGT+TGG | - | chr4_4:72999762-72999781 | Msa0701590:CDS | 35.0% | |
| ! | GAAGCACTTCTAAAAGCTAT+TGG | - | chr4_4:72999795-72999814 | Msa0701590:CDS | 35.0% |
| AGTATTGTTGAATGGTGACA+TGG | - | chr4_4:72999968-72999987 | Msa0701590:intron | 35.0% | |
| GTATTGTTGAATGGTGACAT+GGG | - | chr4_4:72999969-72999988 | Msa0701590:intron | 35.0% | |
| GGATTAGAAGCTACAAATCA+TGG | + | chr4_4:73000137-73000156 | None:intergenic | 35.0% | |
| ! | GGGAGGAACTTTTATGGTAA+AGG | - | chr4_4:72999611-72999630 | Msa0701590:intron | 40.0% |
| GTAAAGGTCACATGTGAGAA+AGG | - | chr4_4:72999627-72999646 | Msa0701590:intron | 40.0% | |
| AGAGATGTGTGTGAATGTTG+AGG | - | chr4_4:72999686-72999705 | Msa0701590:intron | 40.0% | |
| AAAGCTATTGGAAAGCAGAG+TGG | - | chr4_4:72999807-72999826 | Msa0701590:CDS | 40.0% | |
| AAGCTACAAATCATGGCCAA+AGG | + | chr4_4:73000130-73000149 | None:intergenic | 40.0% | |
| ! | GGGAGGAACTTTTATGGTAA+AGG | - | chr4_4:72999611-72999630 | Msa0701590:intron | 40.0% |
| GTAAAGGTCACATGTGAGAA+AGG | - | chr4_4:72999627-72999646 | Msa0701590:intron | 40.0% | |
| AGAGATGTGTGTGAATGTTG+AGG | - | chr4_4:72999686-72999705 | Msa0701590:intron | 40.0% | |
| AAAGCTATTGGAAAGCAGAG+TGG | - | chr4_4:72999807-72999826 | Msa0701590:CDS | 40.0% | |
| AAGCTACAAATCATGGCCAA+AGG | + | chr4_4:73000130-73000149 | None:intergenic | 40.0% | |
| ! | TGGCTTGTAAGGTGCAGAAA+AGG | - | chr4_4:72999064-72999083 | Msa0701590:three_prime_UTR | 45.0% |
| GGCTTGTAAGGTGCAGAAAA+GGG | - | chr4_4:72999065-72999084 | Msa0701590:three_prime_UTR | 45.0% | |
| !! | GCTAATGGACTCTCTTCTTG+CGG | + | chr4_4:72999424-72999443 | None:intergenic | 45.0% |
| AAGGTCACATGTGAGAAAGG+AGG | - | chr4_4:72999630-72999649 | Msa0701590:intron | 45.0% | |
| TGAGAAAGGAGGTGACAAGT+TGG | - | chr4_4:72999641-72999660 | Msa0701590:intron | 45.0% | |
| GGAAGCTATTATTGTGGCTG+AGG | - | chr4_4:72999743-72999762 | Msa0701590:CDS | 45.0% | |
| TGGAAAGCAGAGTGGTGAAA+AGG | - | chr4_4:72999815-72999834 | Msa0701590:CDS | 45.0% | |
| GGAAAGCAGAGTGGTGAAAA+GGG | - | chr4_4:72999816-72999835 | Msa0701590:CDS | 45.0% | |
| ! | TGGCTTGTAAGGTGCAGAAA+AGG | - | chr4_4:72999064-72999083 | Msa0701590:three_prime_UTR | 45.0% |
| GGCTTGTAAGGTGCAGAAAA+GGG | - | chr4_4:72999065-72999084 | Msa0701590:three_prime_UTR | 45.0% | |
| !! | GCTAATGGACTCTCTTCTTG+CGG | + | chr4_4:72999424-72999443 | None:intergenic | 45.0% |
| AAGGTCACATGTGAGAAAGG+AGG | - | chr4_4:72999630-72999649 | Msa0701590:intron | 45.0% | |
| TGAGAAAGGAGGTGACAAGT+TGG | - | chr4_4:72999641-72999660 | Msa0701590:intron | 45.0% | |
| GGAAGCTATTATTGTGGCTG+AGG | - | chr4_4:72999743-72999762 | Msa0701590:CDS | 45.0% | |
| TGGAAAGCAGAGTGGTGAAA+AGG | - | chr4_4:72999815-72999834 | Msa0701590:CDS | 45.0% | |
| GGAAAGCAGAGTGGTGAAAA+GGG | - | chr4_4:72999816-72999835 | Msa0701590:CDS | 45.0% | |
| !!! | TTTTAGTAATATTTATATAT+AGG | + | chr4_4:72999530-72999549 | None:intergenic | 5.0% |
| !!! | TTTTAGTAATATTTATATAT+AGG | + | chr4_4:72999530-72999549 | None:intergenic | 5.0% |
| ACTCTCTTCTTGCGGCTATC+AGG | + | chr4_4:72999416-72999435 | None:intergenic | 50.0% | |
| ACTCTCTTCTTGCGGCTATC+AGG | + | chr4_4:72999416-72999435 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72999022 | 73000191 | 72999022 | ID=Msa0701590;Name=Msa0701590 |
| chr4_4 | mRNA | 72999022 | 73000191 | 72999022 | ID=Msa0701590-mRNA-1;Parent=Msa0701590;Name=Msa0701590-mRNA-1;_AED=0.07;_eAED=0.07;_QI=41|1|1|1|1|1|3|319|170 |
| chr4_4 | exon | 72999022 | 72999625 | 72999022 | ID=Msa0701590-mRNA-1:exon:22369;Parent=Msa0701590-mRNA-1 |
| chr4_4 | exon | 72999743 | 72999889 | 72999743 | ID=Msa0701590-mRNA-1:exon:22368;Parent=Msa0701590-mRNA-1 |
| chr4_4 | exon | 73000070 | 73000191 | 73000070 | ID=Msa0701590-mRNA-1:exon:22367;Parent=Msa0701590-mRNA-1 |
| chr4_4 | five_prime_UTR | 73000151 | 73000191 | 73000151 | ID=Msa0701590-mRNA-1:five_prime_utr;Parent=Msa0701590-mRNA-1 |
| chr4_4 | CDS | 73000070 | 73000150 | 73000070 | ID=Msa0701590-mRNA-1:cds;Parent=Msa0701590-mRNA-1 |
| chr4_4 | CDS | 72999743 | 72999889 | 72999743 | ID=Msa0701590-mRNA-1:cds;Parent=Msa0701590-mRNA-1 |
| chr4_4 | CDS | 72999341 | 72999625 | 72999341 | ID=Msa0701590-mRNA-1:cds;Parent=Msa0701590-mRNA-1 |
| chr4_4 | three_prime_UTR | 72999022 | 72999340 | 72999022 | ID=Msa0701590-mRNA-1:three_prime_utr;Parent=Msa0701590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
