Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565090 | XP_003629659.1 | 94.118 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 1.53e-96 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565090 | G7LHU1 | 94.118 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 7.29e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0565090 | 0.800125 | 1.669216e-48 | -8.615850e-47 |
| Msa0001940 | Msa0565090 | 0.825348 | 4.924375e-54 | -8.615850e-47 |
| Msa0005890 | Msa0565090 | 0.844162 | 8.967172e-59 | -8.615850e-47 |
| Msa0017950 | Msa0565090 | 0.824016 | 1.013976e-53 | -8.615850e-47 |
| Msa0051020 | Msa0565090 | 0.810240 | 1.271675e-50 | -8.615850e-47 |
| Msa0054690 | Msa0565090 | 0.822963 | 1.788431e-53 | -8.615850e-47 |
| Msa0077340 | Msa0565090 | 0.841458 | 4.695435e-58 | -8.615850e-47 |
| Msa0098040 | Msa0565090 | 0.827427 | 1.574347e-54 | -8.615850e-47 |
| Msa0101270 | Msa0565090 | 0.801908 | 7.210034e-49 | -8.615850e-47 |
| Msa0145580 | Msa0565090 | 0.805017 | 1.635686e-49 | -8.615850e-47 |
| Msa0225860 | Msa0565090 | 0.811693 | 6.161790e-51 | -8.615850e-47 |
| Msa0369790 | Msa0565090 | 0.805296 | 1.429820e-49 | -8.615850e-47 |
| Msa0378720 | Msa0565090 | 0.800185 | 1.622929e-48 | -8.615850e-47 |
| Msa0428370 | Msa0565090 | 0.810452 | 1.144531e-50 | -8.615850e-47 |
| Msa0430300 | Msa0565090 | 0.822276 | 2.582476e-53 | -8.615850e-47 |
| Msa0464000 | Msa0565090 | 0.802781 | 4.766269e-49 | -8.615850e-47 |
| Msa0468270 | Msa0565090 | 0.800087 | 1.698730e-48 | -8.615850e-47 |
| Msa0474730 | Msa0565090 | 0.800911 | 1.153909e-48 | -8.615850e-47 |
| Msa0240900 | Msa0565090 | 0.806857 | 6.709317e-50 | -8.615850e-47 |
| Msa0244640 | Msa0565090 | 0.806170 | 9.367791e-50 | -8.615850e-47 |
| Msa0300320 | Msa0565090 | 0.808170 | 3.532995e-50 | -8.615850e-47 |
| Msa0307270 | Msa0565090 | 0.800945 | 1.135538e-48 | -8.615850e-47 |
| Msa0307670 | Msa0565090 | 0.808187 | 3.502686e-50 | -8.615850e-47 |
| Msa0321620 | Msa0565090 | 0.814126 | 1.805560e-51 | -8.615850e-47 |
| Msa0339500 | Msa0565090 | 0.827493 | 1.518043e-54 | -8.615850e-47 |
| Msa0361910 | Msa0565090 | 0.816633 | 5.000631e-52 | -8.615850e-47 |
| Msa0527190 | Msa0565090 | 0.814231 | 1.711537e-51 | -8.615850e-47 |
| Msa0529030 | Msa0565090 | 0.843234 | 1.588311e-58 | -8.615850e-47 |
| Msa0530780 | Msa0565090 | 0.825566 | 4.372360e-54 | -8.615850e-47 |
| Msa0565090 | Msa0580370 | 0.871159 | 8.447190e-67 | -8.615850e-47 |
| Msa0565090 | Msa0581470 | 0.819620 | 1.055534e-52 | -8.615850e-47 |
| Msa0565090 | Msa0582480 | 0.810318 | 1.223318e-50 | -8.615850e-47 |
| Msa0565090 | Msa0587620 | 0.807127 | 5.883069e-50 | -8.615850e-47 |
| Msa0565090 | Msa0597790 | 0.831527 | 1.586701e-55 | -8.615850e-47 |
| Msa0565090 | Msa0614000 | 0.814090 | 1.838747e-51 | -8.615850e-47 |
| Msa0565090 | Msa0618070 | 0.915401 | 6.153440e-85 | -8.615850e-47 |
| Msa0565090 | Msa0624900 | 0.810302 | 1.233168e-50 | -8.615850e-47 |
| Msa0565090 | Msa0626450 | 0.819195 | 1.318962e-52 | -8.615850e-47 |
| Msa0565090 | Msa0626490 | 0.814961 | 1.180214e-51 | -8.615850e-47 |
| Msa0565090 | Msa0637560 | 0.817731 | 2.832739e-52 | -8.615850e-47 |
| Msa0565090 | Msa0637580 | 0.819136 | 1.361050e-52 | -8.615850e-47 |
| Msa0565090 | Msa0638480 | 0.823009 | 1.744779e-53 | -8.615850e-47 |
| Msa0565090 | Msa0652770 | 0.803499 | 3.386554e-49 | -8.615850e-47 |
| Msa0565090 | Msa0658640 | 0.809414 | 1.915114e-50 | -8.615850e-47 |
| Msa0565090 | Msa0664090 | 0.808663 | 2.772371e-50 | -8.615850e-47 |
| Msa0565090 | Msa0664600 | 0.818175 | 2.248778e-52 | -8.615850e-47 |
| Msa0565090 | Msa0697160 | 0.820565 | 6.412770e-53 | -8.615850e-47 |
| Msa0565090 | Msa0701590 | 0.871708 | 5.560938e-67 | -8.615850e-47 |
| Msa0565090 | Msa0721080 | 0.801886 | 7.286626e-49 | -8.615850e-47 |
| Msa0565090 | Msa0735780 | 0.812593 | 3.921899e-51 | -8.615850e-47 |
| Msa0565090 | Msa0792370 | 0.804590 | 2.008008e-49 | -8.615850e-47 |
| Msa0565090 | Msa0795870 | 0.861879 | 7.523968e-64 | -8.615850e-47 |
| Msa0565090 | Msa0829330 | 0.800234 | 1.585609e-48 | -8.615850e-47 |
| Msa0565090 | Msa0833650 | 0.865896 | 4.235037e-65 | -8.615850e-47 |
| Msa0565090 | Msa0878280 | 0.804786 | 1.827712e-49 | -8.615850e-47 |
| Msa0565090 | Msa0894400 | 0.816198 | 6.256417e-52 | -8.615850e-47 |
| Msa0565090 | Msa0921000 | 0.813144 | 2.969187e-51 | -8.615850e-47 |
| Msa0565090 | Msa0945190 | 0.804240 | 2.375928e-49 | -8.615850e-47 |
| Msa0565090 | Msa0967380 | 0.810214 | 1.288473e-50 | -8.615850e-47 |
| Msa0565090 | Msa1011530 | 0.804542 | 2.055058e-49 | -8.615850e-47 |
| Msa0565090 | Msa1044470 | 0.809945 | 1.472539e-50 | -8.615850e-47 |
| Msa0565090 | Msa1044680 | 0.822696 | 2.062849e-53 | -8.615850e-47 |
| Msa0565090 | Msa1077990 | 0.830995 | 2.145447e-55 | -8.615850e-47 |
| Msa0565090 | Msa1078170 | 0.811651 | 6.293066e-51 | -8.615850e-47 |
| Msa0565090 | Msa1103990 | 0.818057 | 2.391083e-52 | -8.615850e-47 |
| Msa0565090 | Msa1132840 | 0.868356 | 6.940000e-66 | -8.615850e-47 |
| Msa0565090 | Msa1186020 | 0.832202 | 1.081554e-55 | -8.615850e-47 |
| Msa0565090 | Msa1200890 | 0.807238 | 5.571749e-50 | -8.615850e-47 |
| Msa0565090 | Msa1205280 | 0.806054 | 9.907822e-50 | -8.615850e-47 |
| Msa0565090 | Msa1217210 | 0.808511 | 2.988145e-50 | -8.615850e-47 |
| Msa0565090 | Msa1226520 | 0.807934 | 3.964826e-50 | -8.615850e-47 |
| Msa0565090 | Msa1345100 | 0.810094 | 1.367128e-50 | -8.615850e-47 |
| Msa0565090 | Msa1347310 | 0.805304 | 1.423776e-49 | -8.615850e-47 |
| Msa0565090 | Msa1359690 | 0.820833 | 5.565115e-53 | -8.615850e-47 |
| Msa0565090 | Msa1373100 | 0.830053 | 3.646872e-55 | -8.615850e-47 |
| Msa0565090 | Msa1392580 | 0.814603 | 1.416704e-51 | -8.615850e-47 |
| Msa0565090 | Msa1405460 | 0.844182 | 8.858009e-59 | -8.615850e-47 |
| Msa0565090 | Msa1412000 | 0.807690 | 4.469480e-50 | -8.615850e-47 |
| Msa0565090 | Msa1422950 | 0.829947 | 3.869843e-55 | -8.615850e-47 |
| Msa0565090 | Msa1440880 | 0.830924 | 2.232824e-55 | -8.615850e-47 |
| Msa0565090 | Msa1440960 | 0.806865 | 6.684073e-50 | -8.615850e-47 |
| Msa0565090 | Msa1446810 | 0.818551 | 1.847478e-52 | -8.615850e-47 |
| Msa0565090 | Msa1451160 | 0.823600 | 1.269649e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565090 | MtrunA17_Chr8g0379441 | 94.118 | 170 | 10 | 0 | 1 | 170 | 1 | 170 | 1.40e-100 | 286 |
| Msa0565090 | MtrunA17_Chr8g0379451 | 71.951 | 82 | 23 | 0 | 89 | 170 | 1 | 82 | 4.38e-36 | 120 |
| Msa0565090 | MtrunA17_Chr5g0437991 | 35.484 | 155 | 89 | 6 | 1 | 154 | 25 | 169 | 2.82e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0565090 | AT1G29270.1 | 38.365 | 159 | 88 | 4 | 1 | 156 | 1 | 152 | 7.38e-26 | 97.1 |
| Msa0565090 | AT1G29270.2 | 41.085 | 129 | 67 | 3 | 30 | 156 | 7 | 128 | 1.21e-23 | 90.5 |
| Msa0565090 | AT2G40435.1 | 35.669 | 157 | 86 | 8 | 1 | 152 | 1 | 147 | 5.85e-13 | 63.5 |
| Msa0565090 | AT3G56220.1 | 32.298 | 161 | 95 | 6 | 1 | 156 | 1 | 152 | 7.85e-11 | 57.8 |
Find 38 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAAAAGCCTCTAAAAT+TGG | 0.235711 | 4_1:-66007428 | None:intergenic |
| TAGAAAAGTACTCTTGTTAA+TGG | 0.243551 | 4_1:-66007098 | None:intergenic |
| GCAAGAGTTTCATGTGAAAA+TGG | 0.245398 | 4_1:+66007473 | Msa0565090:CDS |
| ATGTTAAGATAGAGAAAATA+AGG | 0.252575 | 4_1:+66007351 | Msa0565090:CDS |
| GACATGTTTGGATGTTTATA+CGG | 0.283042 | 4_1:+66007848 | Msa0565090:three_prime_UTR |
| AGTGAAACCAAACATAAATT+AGG | 0.299754 | 4_1:-66007803 | None:intergenic |
| ACTCTCTTCTTGCGGCTATC+AGG | 0.318826 | 4_1:-66007174 | None:intergenic |
| TTCTCATCCTAATTTATGTT+TGG | 0.329997 | 4_1:+66007796 | Msa0565090:three_prime_UTR |
| GAAGCACTTCTAAAAGCTAT+TGG | 0.338458 | 4_1:+66007557 | Msa0565090:CDS |
| GACATTATTCAATAAGCTAA+TGG | 0.375889 | 4_1:-66007197 | None:intergenic |
| GGTAAAACTAAATTTACCTT+TGG | 0.385623 | 4_1:+66007869 | Msa0565090:three_prime_UTR |
| AATATTAGAGATGGCTTGTA+AGG | 0.412524 | 4_1:+66006810 | Msa0565090:exon |
| TGTTAAGATAGAGAAAATAA+GGG | 0.418872 | 4_1:+66007352 | Msa0565090:CDS |
| CTTGTTAATGGAATTTCTGT+TGG | 0.425108 | 4_1:-66007086 | None:intergenic |
| TGGCTTGTAAGGTGCAGAAA+AGG | 0.441174 | 4_1:+66006821 | Msa0565090:CDS |
| GGATCAGAAGCTACAAATCA+TGG | 0.448763 | 4_1:-66007892 | None:intergenic |
| TCACTTAAGATGTAATCAAT+TGG | 0.452566 | 4_1:+66007821 | Msa0565090:three_prime_UTR |
| CATTATTGTTGGAGTTGGTA+AGG | 0.458218 | 4_1:-66006879 | None:intergenic |
| TGGAAAGCAGAGTGGTGAAA+AGG | 0.477572 | 4_1:+66007577 | Msa0565090:CDS |
| GTAAAGGTCACATGTGAGAA+AGG | 0.513294 | 4_1:+66007389 | Msa0565090:CDS |
| GGAAAGCAGAGTGGTGAAAA+GGG | 0.519153 | 4_1:+66007578 | Msa0565090:CDS |
| TTCTATGGAAGCTATTATTG+TGG | 0.540454 | 4_1:+66007499 | Msa0565090:CDS |
| GGAAGCTATTATTGTGGCTG+AGG | 0.546345 | 4_1:+66007505 | Msa0565090:CDS |
| GGCTTGTAAGGTGCAGAAAA+GGG | 0.547566 | 4_1:+66006822 | Msa0565090:CDS |
| TATGTAATAGTATTGTTGAA+TGG | 0.555192 | 4_1:+66007722 | Msa0565090:three_prime_UTR |
| AAAGCAGTAAATATTAGAGA+TGG | 0.580276 | 4_1:+66006801 | Msa0565090:exon |
| TGAGAAAGGAGGTGACAAGT+TGG | 0.586233 | 4_1:+66007403 | Msa0565090:CDS |
| GAATAATGTCTATGATAACA+AGG | 0.596304 | 4_1:+66007210 | Msa0565090:CDS |
| CAACATTCACAAATCACAAG+AGG | 0.597444 | 4_1:+66006772 | None:intergenic |
| GTTAAGATAGAGAAAATAAG+GGG | 0.609952 | 4_1:+66007353 | Msa0565090:CDS |
| AGTATTGTTGAATGGTGACA+TGG | 0.624222 | 4_1:+66007730 | Msa0565090:three_prime_UTR |
| GCTAATGGACTCTCTTCTTG+CGG | 0.625040 | 4_1:-66007182 | None:intergenic |
| AAGATAGAGAAAATAAGGGG+AGG | 0.627338 | 4_1:+66007356 | Msa0565090:CDS |
| AAGCTACAAATCATGGCCAA+AGG | 0.639180 | 4_1:-66007885 | None:intergenic |
| AGAGATGTGTGTGAATGTTG+AGG | 0.643020 | 4_1:+66007448 | Msa0565090:CDS |
| AAAGCTATTGGAAAGCAGAG+TGG | 0.675693 | 4_1:+66007569 | Msa0565090:CDS |
| AAGGTCACATGTGAGAAAGG+AGG | 0.686761 | 4_1:+66007392 | Msa0565090:CDS |
| GTATTGTTGAATGGTGACAT+GGG | 0.693521 | 4_1:+66007731 | Msa0565090:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTTTTTTTTATTATAAC+AGG | + | chr4_1:66007328-66007347 | Msa0565090:intron | 10.0% |
| !!! | ATGTTTTTTTTTATTATAAC+AGG | + | chr4_1:66007328-66007347 | Msa0565090:intron | 10.0% |
| !!! | TGTTAATTTTACATTATTGT+TGG | - | chr4_1:66006893-66006912 | None:intergenic | 15.0% |
| !! | GAATGTAAAAAAAGAAAAAA+AGG | - | chr4_1:66006922-66006941 | None:intergenic | 15.0% |
| !!! | TGTTAATTTTACATTATTGT+TGG | - | chr4_1:66006893-66006912 | None:intergenic | 15.0% |
| !! | GAATGTAAAAAAAGAAAAAA+AGG | - | chr4_1:66006922-66006941 | None:intergenic | 15.0% |
| !! | TCAGTGGAAAAAAATAATAA+TGG | - | chr4_1:66006953-66006972 | None:intergenic | 20.0% |
| !! | TAATATTTATATATAGGCCT+TGG | - | chr4_1:66007286-66007305 | None:intergenic | 20.0% |
| !!! | AAAAACATGTTATTTTTGCT+TGG | - | chr4_1:66007316-66007335 | None:intergenic | 20.0% |
| !! | ATGTTAAGATAGAGAAAATA+AGG | + | chr4_1:66007351-66007370 | Msa0565090:CDS | 20.0% |
| !! | TGTTAAGATAGAGAAAATAA+GGG | + | chr4_1:66007352-66007371 | Msa0565090:CDS | 20.0% |
| !!! | AAATATGTAAAAACTTGTTG+AGG | - | chr4_1:66007681-66007700 | None:intergenic | 20.0% |
| !! | TATGTAATAGTATTGTTGAA+TGG | + | chr4_1:66007722-66007741 | Msa0565090:three_prime_UTR | 20.0% |
| !!! | TAAATATTGTTTTGAAAGCT+TGG | + | chr4_1:66007759-66007778 | Msa0565090:three_prime_UTR | 20.0% |
| !! | TCAGTGGAAAAAAATAATAA+TGG | - | chr4_1:66006953-66006972 | None:intergenic | 20.0% |
| !! | TAATATTTATATATAGGCCT+TGG | - | chr4_1:66007286-66007305 | None:intergenic | 20.0% |
| !!! | AAAAACATGTTATTTTTGCT+TGG | - | chr4_1:66007316-66007335 | None:intergenic | 20.0% |
| !! | ATGTTAAGATAGAGAAAATA+AGG | + | chr4_1:66007351-66007370 | Msa0565090:CDS | 20.0% |
| !! | TGTTAAGATAGAGAAAATAA+GGG | + | chr4_1:66007352-66007371 | Msa0565090:CDS | 20.0% |
| !!! | AAATATGTAAAAACTTGTTG+AGG | - | chr4_1:66007681-66007700 | None:intergenic | 20.0% |
| !! | TATGTAATAGTATTGTTGAA+TGG | + | chr4_1:66007722-66007741 | Msa0565090:three_prime_UTR | 20.0% |
| !!! | TAAATATTGTTTTGAAAGCT+TGG | + | chr4_1:66007759-66007778 | Msa0565090:three_prime_UTR | 20.0% |
| ! | AAAGCAGTAAATATTAGAGA+TGG | + | chr4_1:66006801-66006820 | Msa0565090:exon | 25.0% |
| !! | TTTTACATTATTGTTGGAGT+TGG | - | chr4_1:66006887-66006906 | None:intergenic | 25.0% |
| ! | GATTAAATTTGTGAAATCAG+TGG | - | chr4_1:66006969-66006988 | None:intergenic | 25.0% |
| !!! | TTGTTACTTGTTTGTTTTGA+AGG | + | chr4_1:66007063-66007082 | Msa0565090:intron | 25.0% |
| !!! | TAGAAAAGTACTCTTGTTAA+TGG | - | chr4_1:66007101-66007120 | None:intergenic | 25.0% |
| ! | GACATTATTCAATAAGCTAA+TGG | - | chr4_1:66007200-66007219 | None:intergenic | 25.0% |
| ! | GAATAATGTCTATGATAACA+AGG | + | chr4_1:66007210-66007229 | Msa0565090:CDS | 25.0% |
| ! | TATAGAAAAACACAAAACCA+AGG | + | chr4_1:66007266-66007285 | Msa0565090:intron | 25.0% |
| ! | GTTAAGATAGAGAAAATAAG+GGG | + | chr4_1:66007353-66007372 | Msa0565090:CDS | 25.0% |
| !!! | ATGTGAAAATGGATTTTCTA+TGG | + | chr4_1:66007484-66007503 | Msa0565090:CDS | 25.0% |
| ! | TTCTCATCCTAATTTATGTT+TGG | + | chr4_1:66007796-66007815 | Msa0565090:three_prime_UTR | 25.0% |
| ! | AGTGAAACCAAACATAAATT+AGG | - | chr4_1:66007806-66007825 | None:intergenic | 25.0% |
| ! | TCACTTAAGATGTAATCAAT+TGG | + | chr4_1:66007821-66007840 | Msa0565090:three_prime_UTR | 25.0% |
| ! | GGTAAAACTAAATTTACCTT+TGG | + | chr4_1:66007869-66007888 | Msa0565090:three_prime_UTR | 25.0% |
| !! | TGAGTGTAAAAATCACATTT+TGG | - | chr4_1:66007916-66007935 | None:intergenic | 25.0% |
| ! | AAAGCAGTAAATATTAGAGA+TGG | + | chr4_1:66006801-66006820 | Msa0565090:exon | 25.0% |
| !! | TTTTACATTATTGTTGGAGT+TGG | - | chr4_1:66006887-66006906 | None:intergenic | 25.0% |
| ! | GATTAAATTTGTGAAATCAG+TGG | - | chr4_1:66006969-66006988 | None:intergenic | 25.0% |
| !!! | TTGTTACTTGTTTGTTTTGA+AGG | + | chr4_1:66007063-66007082 | Msa0565090:intron | 25.0% |
| !!! | TAGAAAAGTACTCTTGTTAA+TGG | - | chr4_1:66007101-66007120 | None:intergenic | 25.0% |
| ! | GACATTATTCAATAAGCTAA+TGG | - | chr4_1:66007200-66007219 | None:intergenic | 25.0% |
| ! | GAATAATGTCTATGATAACA+AGG | + | chr4_1:66007210-66007229 | Msa0565090:CDS | 25.0% |
| ! | TATAGAAAAACACAAAACCA+AGG | + | chr4_1:66007266-66007285 | Msa0565090:intron | 25.0% |
| ! | GTTAAGATAGAGAAAATAAG+GGG | + | chr4_1:66007353-66007372 | Msa0565090:CDS | 25.0% |
| !!! | ATGTGAAAATGGATTTTCTA+TGG | + | chr4_1:66007484-66007503 | Msa0565090:CDS | 25.0% |
| ! | TTCTCATCCTAATTTATGTT+TGG | + | chr4_1:66007796-66007815 | Msa0565090:three_prime_UTR | 25.0% |
| ! | AGTGAAACCAAACATAAATT+AGG | - | chr4_1:66007806-66007825 | None:intergenic | 25.0% |
| ! | TCACTTAAGATGTAATCAAT+TGG | + | chr4_1:66007821-66007840 | Msa0565090:three_prime_UTR | 25.0% |
| ! | GGTAAAACTAAATTTACCTT+TGG | + | chr4_1:66007869-66007888 | Msa0565090:three_prime_UTR | 25.0% |
| !! | TGAGTGTAAAAATCACATTT+TGG | - | chr4_1:66007916-66007935 | None:intergenic | 25.0% |
| ! | AATATTAGAGATGGCTTGTA+AGG | + | chr4_1:66006810-66006829 | Msa0565090:exon | 30.0% |
| CTTGTTAATGGAATTTCTGT+TGG | - | chr4_1:66007089-66007108 | None:intergenic | 30.0% | |
| !! | TCTTCAAAAGCCTCTAAAAT+TGG | - | chr4_1:66007431-66007450 | None:intergenic | 30.0% |
| TTCTATGGAAGCTATTATTG+TGG | + | chr4_1:66007499-66007518 | Msa0565090:CDS | 30.0% | |
| !!! | TCAATTGGTTTTGACATGTT+TGG | + | chr4_1:66007836-66007855 | Msa0565090:three_prime_UTR | 30.0% |
| GACATGTTTGGATGTTTATA+CGG | + | chr4_1:66007848-66007867 | Msa0565090:three_prime_UTR | 30.0% | |
| TATTATCCTCTTGTGATTTG+TGG | - | chr4_1:66006781-66006800 | None:intergenic | 30.0% | |
| ! | AATATTAGAGATGGCTTGTA+AGG | + | chr4_1:66006810-66006829 | Msa0565090:exon | 30.0% |
| CTTGTTAATGGAATTTCTGT+TGG | - | chr4_1:66007089-66007108 | None:intergenic | 30.0% | |
| !! | TCTTCAAAAGCCTCTAAAAT+TGG | - | chr4_1:66007431-66007450 | None:intergenic | 30.0% |
| TTCTATGGAAGCTATTATTG+TGG | + | chr4_1:66007499-66007518 | Msa0565090:CDS | 30.0% | |
| !!! | TCAATTGGTTTTGACATGTT+TGG | + | chr4_1:66007836-66007855 | Msa0565090:three_prime_UTR | 30.0% |
| GACATGTTTGGATGTTTATA+CGG | + | chr4_1:66007848-66007867 | Msa0565090:three_prime_UTR | 30.0% | |
| !! | CATTATTGTTGGAGTTGGTA+AGG | - | chr4_1:66006882-66006901 | None:intergenic | 35.0% |
| AAGATAGAGAAAATAAGGGG+AGG | + | chr4_1:66007356-66007375 | Msa0565090:CDS | 35.0% | |
| ! | AATAAGGGGAGGAACTTTTA+TGG | + | chr4_1:66007367-66007386 | Msa0565090:CDS | 35.0% |
| !!! | CAAGTTGGTTCCAATTTTAG+AGG | + | chr4_1:66007418-66007437 | Msa0565090:CDS | 35.0% |
| GCAAGAGTTTCATGTGAAAA+TGG | + | chr4_1:66007473-66007492 | Msa0565090:CDS | 35.0% | |
| ! | GAAGCACTTCTAAAAGCTAT+TGG | + | chr4_1:66007557-66007576 | Msa0565090:CDS | 35.0% |
| AGTATTGTTGAATGGTGACA+TGG | + | chr4_1:66007730-66007749 | Msa0565090:three_prime_UTR | 35.0% | |
| GTATTGTTGAATGGTGACAT+GGG | + | chr4_1:66007731-66007750 | Msa0565090:three_prime_UTR | 35.0% | |
| !! | CATTATTGTTGGAGTTGGTA+AGG | - | chr4_1:66006882-66006901 | None:intergenic | 35.0% |
| AAGATAGAGAAAATAAGGGG+AGG | + | chr4_1:66007356-66007375 | Msa0565090:CDS | 35.0% | |
| ! | AATAAGGGGAGGAACTTTTA+TGG | + | chr4_1:66007367-66007386 | Msa0565090:CDS | 35.0% |
| !!! | CAAGTTGGTTCCAATTTTAG+AGG | + | chr4_1:66007418-66007437 | Msa0565090:CDS | 35.0% |
| GCAAGAGTTTCATGTGAAAA+TGG | + | chr4_1:66007473-66007492 | Msa0565090:CDS | 35.0% | |
| ! | GAAGCACTTCTAAAAGCTAT+TGG | + | chr4_1:66007557-66007576 | Msa0565090:CDS | 35.0% |
| AGTATTGTTGAATGGTGACA+TGG | + | chr4_1:66007730-66007749 | Msa0565090:three_prime_UTR | 35.0% | |
| GTATTGTTGAATGGTGACAT+GGG | + | chr4_1:66007731-66007750 | Msa0565090:three_prime_UTR | 35.0% | |
| ! | GGGAGGAACTTTTATGGTAA+AGG | + | chr4_1:66007373-66007392 | Msa0565090:CDS | 40.0% |
| GTAAAGGTCACATGTGAGAA+AGG | + | chr4_1:66007389-66007408 | Msa0565090:CDS | 40.0% | |
| AGAGATGTGTGTGAATGTTG+AGG | + | chr4_1:66007448-66007467 | Msa0565090:CDS | 40.0% | |
| AAAGCTATTGGAAAGCAGAG+TGG | + | chr4_1:66007569-66007588 | Msa0565090:CDS | 40.0% | |
| AAGCTACAAATCATGGCCAA+AGG | - | chr4_1:66007888-66007907 | None:intergenic | 40.0% | |
| GGATCAGAAGCTACAAATCA+TGG | - | chr4_1:66007895-66007914 | None:intergenic | 40.0% | |
| ! | GGGAGGAACTTTTATGGTAA+AGG | + | chr4_1:66007373-66007392 | Msa0565090:CDS | 40.0% |
| GTAAAGGTCACATGTGAGAA+AGG | + | chr4_1:66007389-66007408 | Msa0565090:CDS | 40.0% | |
| AGAGATGTGTGTGAATGTTG+AGG | + | chr4_1:66007448-66007467 | Msa0565090:CDS | 40.0% | |
| AAAGCTATTGGAAAGCAGAG+TGG | + | chr4_1:66007569-66007588 | Msa0565090:CDS | 40.0% | |
| AAGCTACAAATCATGGCCAA+AGG | - | chr4_1:66007888-66007907 | None:intergenic | 40.0% | |
| GGATCAGAAGCTACAAATCA+TGG | - | chr4_1:66007895-66007914 | None:intergenic | 40.0% | |
| ! | TGGCTTGTAAGGTGCAGAAA+AGG | + | chr4_1:66006821-66006840 | Msa0565090:CDS | 45.0% |
| GGCTTGTAAGGTGCAGAAAA+GGG | + | chr4_1:66006822-66006841 | Msa0565090:CDS | 45.0% | |
| !! | GCTAATGGACTCTCTTCTTG+CGG | - | chr4_1:66007185-66007204 | None:intergenic | 45.0% |
| AAGGTCACATGTGAGAAAGG+AGG | + | chr4_1:66007392-66007411 | Msa0565090:CDS | 45.0% | |
| TGAGAAAGGAGGTGACAAGT+TGG | + | chr4_1:66007403-66007422 | Msa0565090:CDS | 45.0% | |
| GGAAGCTATTATTGTGGCTG+AGG | + | chr4_1:66007505-66007524 | Msa0565090:CDS | 45.0% | |
| TGGAAAGCAGAGTGGTGAAA+AGG | + | chr4_1:66007577-66007596 | Msa0565090:CDS | 45.0% | |
| GGAAAGCAGAGTGGTGAAAA+GGG | + | chr4_1:66007578-66007597 | Msa0565090:CDS | 45.0% | |
| ! | TGGCTTGTAAGGTGCAGAAA+AGG | + | chr4_1:66006821-66006840 | Msa0565090:CDS | 45.0% |
| GGCTTGTAAGGTGCAGAAAA+GGG | + | chr4_1:66006822-66006841 | Msa0565090:CDS | 45.0% | |
| !! | GCTAATGGACTCTCTTCTTG+CGG | - | chr4_1:66007185-66007204 | None:intergenic | 45.0% |
| AAGGTCACATGTGAGAAAGG+AGG | + | chr4_1:66007392-66007411 | Msa0565090:CDS | 45.0% | |
| TGAGAAAGGAGGTGACAAGT+TGG | + | chr4_1:66007403-66007422 | Msa0565090:CDS | 45.0% | |
| GGAAGCTATTATTGTGGCTG+AGG | + | chr4_1:66007505-66007524 | Msa0565090:CDS | 45.0% | |
| TGGAAAGCAGAGTGGTGAAA+AGG | + | chr4_1:66007577-66007596 | Msa0565090:CDS | 45.0% | |
| GGAAAGCAGAGTGGTGAAAA+GGG | + | chr4_1:66007578-66007597 | Msa0565090:CDS | 45.0% | |
| !!! | TTTTAGTAATATTTATATAT+AGG | - | chr4_1:66007292-66007311 | None:intergenic | 5.0% |
| !!! | TTTTAGTAATATTTATATAT+AGG | - | chr4_1:66007292-66007311 | None:intergenic | 5.0% |
| ACTCTCTTCTTGCGGCTATC+AGG | - | chr4_1:66007177-66007196 | None:intergenic | 50.0% | |
| ACTCTCTTCTTGCGGCTATC+AGG | - | chr4_1:66007177-66007196 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 66006779 | 66007949 | 66006779 | ID=Msa0565090;Name=Msa0565090 |
| chr4_1 | mRNA | 66006779 | 66007949 | 66006779 | ID=Msa0565090-mRNA-1;Parent=Msa0565090;Name=Msa0565090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=41|1|1|1|1|1|3|315|170 |
| chr4_1 | exon | 66006779 | 66006900 | 66006779 | ID=Msa0565090-mRNA-1:exon:21315;Parent=Msa0565090-mRNA-1 |
| chr4_1 | exon | 66007085 | 66007231 | 66007085 | ID=Msa0565090-mRNA-1:exon:21316;Parent=Msa0565090-mRNA-1 |
| chr4_1 | exon | 66007350 | 66007949 | 66007350 | ID=Msa0565090-mRNA-1:exon:21317;Parent=Msa0565090-mRNA-1 |
| chr4_1 | five_prime_UTR | 66006779 | 66006819 | 66006779 | ID=Msa0565090-mRNA-1:five_prime_utr;Parent=Msa0565090-mRNA-1 |
| chr4_1 | CDS | 66006820 | 66006900 | 66006820 | ID=Msa0565090-mRNA-1:cds;Parent=Msa0565090-mRNA-1 |
| chr4_1 | CDS | 66007085 | 66007231 | 66007085 | ID=Msa0565090-mRNA-1:cds;Parent=Msa0565090-mRNA-1 |
| chr4_1 | CDS | 66007350 | 66007634 | 66007350 | ID=Msa0565090-mRNA-1:cds;Parent=Msa0565090-mRNA-1 |
| chr4_1 | three_prime_UTR | 66007635 | 66007949 | 66007635 | ID=Msa0565090-mRNA-1:three_prime_utr;Parent=Msa0565090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
