AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054690 MtrunA17_Chr1g0150131 94.118 187 8 1 1 187 1 184 1.03e-107 306
Msa0054690 MtrunA17_Chr3g0136871 64.474 152 47 3 25 176 24 168 6.20e-64 195
Msa0054690 MtrunA17_Chr7g0256441 56.757 148 40 4 25 172 24 147 9.71e-50 157
Msa0054690 MtrunA17_Chr8g0360371 47.107 121 58 3 12 132 11 125 6.35e-35 124
Msa0054690 MtrunA17_Chr4g0041811 49.541 109 54 1 24 132 28 135 2.59e-34 120
Msa0054690 MtrunA17_Chr2g0317231 43.151 146 79 3 10 155 8 149 2.69e-32 122
Msa0054690 MtrunA17_Chr6g0458331 48.182 110 54 2 21 129 29 136 1.13e-31 112
Msa0054690 MtrunA17_Chr2g0324711 41.818 165 77 7 11 163 11 168 6.15e-30 112
Msa0054690 MtrunA17_Chr2g0324721 38.286 175 88 4 30 187 29 200 1.59e-29 107
Msa0054690 MtrunA17_Chr4g0040291 44.615 130 68 3 25 153 22 148 2.01e-29 107
Msa0054690 MtrunA17_Chr2g0331181 37.654 162 87 7 4 162 2 152 2.05e-28 104
Msa0054690 MtrunA17_Chr4g0062341 36.957 138 78 4 1 132 1 135 4.69e-27 100
Msa0054690 MtrunA17_Chr4g0062311 36.957 138 78 4 1 132 1 135 4.69e-27 100
Msa0054690 MtrunA17_Chr4g0039721 36.913 149 81 5 1 143 1 142 6.29e-27 100
Msa0054690 MtrunA17_Chr2g0319611 41.818 110 61 3 25 132 23 131 4.77e-26 100
Msa0054690 MtrunA17_Chr8g0385021 36.686 169 91 4 12 167 7 172 1.84e-24 96.7
Msa0054690 MtrunA17_Chr4g0073901 37.302 126 74 1 8 128 4 129 4.12e-24 93.6
Msa0054690 MtrunA17_Chr8g0385031 42.373 118 63 3 11 128 10 122 5.64e-23 93.2
Msa0054690 MtrunA17_Chr2g0323021 37.013 154 87 5 15 168 13 156 6.64e-23 91.7
Msa0054690 MtrunA17_Chr4g0073921 37.405 131 79 3 1 129 1 130 7.16e-23 92.4
Msa0054690 MtrunA17_Chr1g0188981 39.796 98 58 1 32 128 32 129 2.64e-22 89.0
Msa0054690 MtrunA17_Chr5g0394321 26.705 176 121 3 12 187 11 178 6.63e-22 87.8
Msa0054690 MtrunA17_Chr8g0385041 40.625 128 63 5 30 148 27 150 1.80e-21 89.4
Msa0054690 MtrunA17_Chr4g0064041 32.738 168 92 2 32 178 194 361 3.73e-20 86.3
Msa0054690 MtrunA17_Chr4g0064041 31.852 135 89 2 12 146 13 144 5.83e-18 80.1
Msa0054690 MtrunA17_Chr1g0205701 35.833 120 75 1 49 166 43 162 1.27e-18 79.3
Msa0054690 MtrunA17_Chr3g0127521 32.955 176 83 5 12 163 8 172 8.50e-18 79.0
Msa0054690 MtrunA17_Chr2g0306461 36.885 122 66 4 15 128 7 125 1.30e-16 74.3
Msa0054690 MtrunA17_Chr6g0481491 33.333 114 69 3 17 130 18 124 1.52e-16 74.3
Msa0054690 MtrunA17_Chr4g0064031 34.375 96 61 2 25 118 25 120 2.08e-16 72.8
Msa0054690 MtrunA17_Chr8g0335531 36.719 128 72 4 5 130 2 122 2.92e-16 73.2
Msa0054690 MtrunA17_Chr1g0196801 31.613 155 93 6 32 184 26 169 4.94e-16 72.4
Msa0054690 MtrunA17_Chr8g0335571 35.938 128 73 4 5 130 2 122 1.52e-15 71.2
Msa0054690 MtrunA17_Chr8g0387804 37.113 97 60 1 32 128 32 127 6.63e-15 68.2
Msa0054690 MtrunA17_Chr8g0379081 38.525 122 62 4 75 186 1 119 1.00e-14 67.4
Msa0054690 MtrunA17_Chr4g0033131 27.869 122 77 3 17 128 9 129 1.95e-14 67.8
Msa0054690 MtrunA17_Chr4g0033531 27.869 122 77 3 17 128 9 129 1.95e-14 67.8
Msa0054690 MtrunA17_Chr2g0289741 34.426 122 65 3 44 164 39 146 5.70e-14 66.6
Msa0054690 MtrunA17_Chr6g0483981 33.571 140 82 5 37 172 35 167 8.78e-14 68.9
Msa0054690 MtrunA17_Chr7g0253641 32.558 129 81 3 7 134 4 127 1.07e-13 67.0
Msa0054690 MtrunA17_Chr6g0459441 36.735 98 56 4 32 128 29 121 4.73e-13 64.3
Msa0054690 MtrunA17_Chr8g0380901 32.759 116 74 2 11 126 7 118 8.10e-13 62.4
Msa0054690 MtrunA17_Chr1g0211101 22.995 187 121 5 1 182 1 169 9.06e-13 63.5
Msa0054690 MtrunA17_Chr3g0132441 40.741 81 47 1 48 128 41 120 1.14e-12 63.5
Msa0054690 MtrunA17_Chr3g0132411 39.506 81 48 1 48 128 80 159 2.00e-12 62.4
Msa0054690 MtrunA17_Chr3g0132431 39.506 81 48 1 48 128 41 120 2.46e-12 62.4
Msa0054690 MtrunA17_Chr7g0253631 30.579 121 79 2 14 134 12 127 5.53e-12 62.4
Msa0054690 MtrunA17_Chr7g0253761 29.457 129 85 3 7 134 4 127 8.64e-12 60.8
Msa0054690 MtrunA17_Chr6g0453921 30.827 133 81 5 4 131 11 137 1.58e-11 60.1
Msa0054690 MtrunA17_Chr3g0132701 37.634 93 53 2 37 128 34 122 1.99e-11 60.5
Msa0054690 MtrunA17_Chr3g0132511 37.634 93 53 2 37 128 34 122 6.54e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054690 AT4G31840.1 49.730 185 77 4 8 187 2 175 1.10e-57 179
Msa0054690 AT2G25060.1 50.286 175 75 5 11 184 15 178 1.53e-55 174
Msa0054690 AT5G25090.1 52.459 122 58 0 11 132 9 130 5.18e-46 150
Msa0054690 AT4G30590.1 59.048 105 43 0 28 132 28 132 8.54e-45 147
Msa0054690 AT5G57920.1 44.079 152 82 3 26 177 21 169 1.02e-43 144
Msa0054690 AT5G57920.3 44.079 152 82 3 26 177 53 201 1.08e-43 145
Msa0054690 AT5G57920.2 44.079 152 82 3 26 177 20 168 1.30e-43 144
Msa0054690 AT2G23990.1 50.000 148 60 3 8 150 3 141 4.95e-41 138
Msa0054690 AT2G23990.2 44.311 167 60 4 8 150 3 160 2.57e-36 126
Msa0054690 AT3G20570.1 41.104 163 82 5 12 164 15 173 1.64e-35 124
Msa0054690 AT5G14345.1 57.143 91 37 1 40 130 28 116 2.25e-31 111
Msa0054690 AT5G53870.2 40.252 159 84 5 10 161 9 163 1.22e-29 112
Msa0054690 AT5G53870.1 40.252 159 84 5 10 161 9 163 1.57e-29 112
Msa0054690 AT4G28365.1 40.123 162 88 6 13 168 11 169 1.72e-29 108
Msa0054690 AT4G27520.1 44.628 121 63 3 12 132 16 132 2.05e-28 108
Msa0054690 AT3G18590.1 45.000 120 60 4 12 129 12 127 1.50e-27 102
Msa0054690 AT4G32490.1 35.429 175 84 5 13 166 11 177 4.59e-26 99.8
Msa0054690 AT1G48940.1 38.889 126 69 3 13 132 6 129 2.17e-25 97.1
Msa0054690 AT2G31050.1 36.170 141 84 3 5 145 6 140 3.56e-22 89.4
Msa0054690 AT1G79800.1 34.459 148 85 4 8 147 8 151 4.10e-22 89.0
Msa0054690 AT1G64640.1 35.897 117 74 1 32 148 36 151 1.83e-21 87.0
Msa0054690 AT2G26720.1 33.813 139 84 3 11 149 12 142 1.82e-20 85.1
Msa0054690 AT2G32300.1 35.714 140 74 5 25 160 23 150 5.57e-19 82.0
Msa0054690 AT2G32300.2 35.714 140 74 5 25 160 53 180 1.83e-18 81.3
Msa0054690 AT5G20230.1 34.426 122 76 3 26 145 23 142 4.76e-17 75.9
Msa0054690 AT5G26330.1 37.500 80 50 0 50 129 43 122 2.05e-16 73.9
Msa0054690 AT5G07475.1 28.571 182 117 6 12 187 10 184 6.81e-16 72.4
Msa0054690 AT3G60270.1 36.364 99 58 2 32 130 29 122 2.27e-14 68.6
Msa0054690 AT1G72230.1 31.967 122 72 2 48 159 38 158 3.45e-13 65.1
Msa0054690 AT1G45063.2 31.933 119 75 3 12 129 14 127 8.75e-13 65.5
Msa0054690 AT1G45063.1 31.933 119 75 3 12 129 14 127 1.25e-12 65.5
Msa0054690 AT3G27200.1 29.839 124 76 3 11 129 5 122 3.25e-12 62.4

Find 56 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATCTTGTTCTCTTT+TGG 0.177913 1_2:+9414785 Msa0054690:CDS
GCAGAAATTATGGATGATTT+TGG 0.191043 1_2:-9414682 None:intergenic
TTGGTTCTTGTTGTTCTCTT+TGG 0.235363 1_2:+9414804 Msa0054690:CDS
TCTTAAAGATGCAGAAATTA+TGG 0.244416 1_2:-9414692 None:intergenic
CTGTGGTTGTCATGAGTCTA+AGG 0.276529 1_2:+9415518 Msa0054690:CDS
AAATTCCATTATATATGTTT+TGG 0.286437 1_2:+9415862 Msa0054690:three_prime_UTR
CCCATCATTGTAGTGTTTGA+TGG 0.297797 1_2:-9415410 None:intergenic
TGAATATCCAAACTAAAATA+AGG 0.318116 1_2:-9415718 None:intergenic
TTCATAATATTAGTATTATT+AGG 0.321476 1_2:+9415737 Msa0054690:three_prime_UTR
TCTCCACTGATGTAGTAGTA+TGG 0.331847 1_2:-9415463 None:intergenic
AAAGTGAGATTTGATCATTC+TGG 0.347650 1_2:+9415439 Msa0054690:CDS
CAAGACCAAAACATATATAA+TGG 0.357893 1_2:-9415867 None:intergenic
AGTATTATTAGGATTAAGAT+TGG 0.382883 1_2:+9415748 Msa0054690:three_prime_UTR
AATCTGATTCTCTCAACAAA+TGG 0.402045 1_2:+9414895 Msa0054690:CDS
GGAGCAACAGCTGAGCCAGC+TGG 0.404423 1_2:-9415601 None:intergenic
CTACTACATCAGTGGAGAAA+AGG 0.404851 1_2:+9415468 Msa0054690:CDS
CCCATCAAACACTACAATGA+TGG 0.417208 1_2:+9415409 Msa0054690:CDS
CCATCATTGTAGTGTTTGAT+GGG 0.419117 1_2:-9415409 None:intergenic
TGCATGGAAGGTTCCTTCTT+CGG 0.420616 1_2:+9414872 Msa0054690:CDS
TACTTAGATGGTCTCCAACT+TGG 0.420901 1_2:-9414935 None:intergenic
CCTTCACCAGCTGAAGTTGA+TGG 0.422615 1_2:+9415577 Msa0054690:CDS
GCAAGGTGGTGGTGTATTTG+TGG 0.435276 1_2:+9415651 Msa0054690:CDS
AAAAGTGAAAATTACTTAGA+TGG 0.435763 1_2:-9414947 None:intergenic
ATTAGGATTAAGATTGGGAT+TGG 0.437592 1_2:+9415754 Msa0054690:three_prime_UTR
AAAACAGTTGCACCACTTGT+TGG 0.440200 1_2:-9415628 None:intergenic
GCAGCTAAGGATATCTTGCT+TGG 0.450579 1_2:+9414837 Msa0054690:CDS
TACTACATCAGTGGAGAAAA+GGG 0.477152 1_2:+9415469 Msa0054690:CDS
ATCTGATTCTCTCAACAAAT+GGG 0.481996 1_2:+9414896 Msa0054690:CDS
TGTGGTTGTCATGAGTCTAA+GGG 0.500303 1_2:+9415519 Msa0054690:CDS
GTTGCACCACTTGTTGGAGC+TGG 0.502974 1_2:-9415622 None:intergenic
GTATTATTAGGATTAAGATT+GGG 0.509185 1_2:+9415749 Msa0054690:three_prime_UTR
TCAAGTGTTCGTTTCCAAGT+TGG 0.513908 1_2:+9414921 Msa0054690:CDS
AGAGAATCAGATTCCGAAGA+AGG 0.516269 1_2:-9414885 None:intergenic
ACTTCAGCTGGTGAAGGTGC+TGG 0.517037 1_2:-9415571 None:intergenic
CCATCAAACACTACAATGAT+GGG 0.517725 1_2:+9415410 Msa0054690:CDS
GCTGAAGTTGATGGTCCAGC+TGG 0.527675 1_2:+9415586 Msa0054690:CDS
GCTGGACCATCAACTTCAGC+TGG 0.530028 1_2:-9415583 None:intergenic
TCAGTTTGGAAATATGAAGC+TGG 0.536642 1_2:+9415328 Msa0054690:intron
GAAAAGGGTCATTGTGAGAA+GGG 0.553149 1_2:+9415484 Msa0054690:CDS
GTGGTTGTCATGAGTCTAAG+GGG 0.573266 1_2:+9415520 Msa0054690:CDS
CCATCAACTTCAGCTGGTGA+AGG 0.581807 1_2:-9415577 None:intergenic
GGTGGTGTATTTGTGGCTGT+AGG 0.582095 1_2:+9415658 Msa0054690:CDS
ATATTAAAATTTGAATGACA+AGG 0.592685 1_2:-9415839 None:intergenic
AGAAAAGGGTCATTGTGAGA+AGG 0.594361 1_2:+9415483 Msa0054690:CDS
GTTGCTCCAGCTCCAACAAG+TGG 0.607631 1_2:+9415616 Msa0054690:CDS
AATATAATAATAATATCAGA+AGG 0.608251 1_2:-9415911 None:intergenic
GCTAAGGATATCTTGCTTGG+TGG 0.617121 1_2:+9414840 Msa0054690:CDS
GGTCCATACTACTACATCAG+TGG 0.620422 1_2:+9415460 Msa0054690:CDS
TGGCAAAACTGATGCATGGA+AGG 0.623442 1_2:+9414860 Msa0054690:CDS
TGGTTGTCATGAGTCTAAGG+GGG 0.630347 1_2:+9415521 Msa0054690:CDS
TAGGAGTGTTTGTTGCCATG+TGG 0.640277 1_2:+9415677 Msa0054690:CDS
TTGGTGGCAAAACTGATGCA+TGG 0.676457 1_2:+9414856 Msa0054690:CDS
TTCAAATCAGAAAAGCCACA+TGG 0.691376 1_2:-9415692 None:intergenic
GGTTGTCATGAGTCTAAGGG+GGG 0.691450 1_2:+9415522 Msa0054690:CDS
GTTGTCATGAGTCTAAGGGG+GGG 0.700416 1_2:+9415523 Msa0054690:CDS
GAAGGGTCAGAAGCTTACTG+TGG 0.745278 1_2:+9415501 Msa0054690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATATTAGTATTATT+AGG + chr1_2:9415737-9415756 Msa0054690:three_prime_UTR 10.0%
!! AATATAATAATAATATCAGA+AGG - chr1_2:9415914-9415933 None:intergenic 10.0%
!! TTCATAATATTAGTATTATT+AGG + chr1_2:9415737-9415756 Msa0054690:three_prime_UTR 10.0%
!! AATATAATAATAATATCAGA+AGG - chr1_2:9415914-9415933 None:intergenic 10.0%
!! ATTGAATTTAGTGATAAAAA+AGG - chr1_2:9414986-9415005 None:intergenic 15.0%
!!! TGAATTTTTACTGATAATTA+AGG - chr1_2:9415026-9415045 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG - chr1_2:9415090-9415109 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG - chr1_2:9415182-9415201 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG - chr1_2:9415262-9415281 None:intergenic 15.0%
!! ATATTAAAATTTGAATGACA+AGG - chr1_2:9415842-9415861 None:intergenic 15.0%
!!! AAATTCCATTATATATGTTT+TGG + chr1_2:9415862-9415881 Msa0054690:three_prime_UTR 15.0%
!! ATTGAATTTAGTGATAAAAA+AGG - chr1_2:9414986-9415005 None:intergenic 15.0%
!!! TGAATTTTTACTGATAATTA+AGG - chr1_2:9415026-9415045 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG - chr1_2:9415090-9415109 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG - chr1_2:9415182-9415201 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG - chr1_2:9415262-9415281 None:intergenic 15.0%
!! ATATTAAAATTTGAATGACA+AGG - chr1_2:9415842-9415861 None:intergenic 15.0%
!!! AAATTCCATTATATATGTTT+TGG + chr1_2:9415862-9415881 Msa0054690:three_prime_UTR 15.0%
!! AAAAGTGAAAATTACTTAGA+TGG - chr1_2:9414950-9414969 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG + chr1_2:9415145-9415164 Msa0054690:intron 20.0%
!! GGTGGAAATATAAAAAAATT+GGG - chr1_2:9415188-9415207 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG - chr1_2:9415189-9415208 None:intergenic 20.0%
!! TGAATATCCAAACTAAAATA+AGG - chr1_2:9415721-9415740 None:intergenic 20.0%
!! AGTATTATTAGGATTAAGAT+TGG + chr1_2:9415748-9415767 Msa0054690:three_prime_UTR 20.0%
!! GTATTATTAGGATTAAGATT+GGG + chr1_2:9415749-9415768 Msa0054690:three_prime_UTR 20.0%
!!! ATTATATATGTTTTGGTCTT+GGG + chr1_2:9415869-9415888 Msa0054690:three_prime_UTR 20.0%
!! AAAAGTGAAAATTACTTAGA+TGG - chr1_2:9414950-9414969 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG + chr1_2:9415145-9415164 Msa0054690:intron 20.0%
!! GGTGGAAATATAAAAAAATT+GGG - chr1_2:9415188-9415207 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG - chr1_2:9415189-9415208 None:intergenic 20.0%
!! TGAATATCCAAACTAAAATA+AGG - chr1_2:9415721-9415740 None:intergenic 20.0%
!! AGTATTATTAGGATTAAGAT+TGG + chr1_2:9415748-9415767 Msa0054690:three_prime_UTR 20.0%
!! GTATTATTAGGATTAAGATT+GGG + chr1_2:9415749-9415768 Msa0054690:three_prime_UTR 20.0%
!!! ATTATATATGTTTTGGTCTT+GGG + chr1_2:9415869-9415888 Msa0054690:three_prime_UTR 20.0%
! TCTTAAAGATGCAGAAATTA+TGG - chr1_2:9414695-9414714 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG + chr1_2:9415192-9415211 Msa0054690:intron 25.0%
! TTGAAAACAAAATACCAAGA+TGG - chr1_2:9415209-9415228 None:intergenic 25.0%
! ATGAACAATAAAGTAGTTAG+TGG - chr1_2:9415298-9415317 None:intergenic 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG + chr1_2:9415314-9415333 Msa0054690:intron 25.0%
!!! TGAATTGCCTTATTTTAGTT+TGG + chr1_2:9415711-9415730 Msa0054690:three_prime_UTR 25.0%
! CAAGACCAAAACATATATAA+TGG - chr1_2:9415870-9415889 None:intergenic 25.0%
!!! CATTATATATGTTTTGGTCT+TGG + chr1_2:9415868-9415887 Msa0054690:three_prime_UTR 25.0%
! TCTTAAAGATGCAGAAATTA+TGG - chr1_2:9414695-9414714 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG + chr1_2:9415192-9415211 Msa0054690:intron 25.0%
! TTGAAAACAAAATACCAAGA+TGG - chr1_2:9415209-9415228 None:intergenic 25.0%
! ATGAACAATAAAGTAGTTAG+TGG - chr1_2:9415298-9415317 None:intergenic 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG + chr1_2:9415314-9415333 Msa0054690:intron 25.0%
!!! TGAATTGCCTTATTTTAGTT+TGG + chr1_2:9415711-9415730 Msa0054690:three_prime_UTR 25.0%
! CAAGACCAAAACATATATAA+TGG - chr1_2:9415870-9415889 None:intergenic 25.0%
!!! CATTATATATGTTTTGGTCT+TGG + chr1_2:9415868-9415887 Msa0054690:three_prime_UTR 25.0%
! GCAGAAATTATGGATGATTT+TGG - chr1_2:9414685-9414704 None:intergenic 30.0%
CAACATTTGCAGAAAAACAA+TGG + chr1_2:9414749-9414768 Msa0054690:exon 30.0%
! TTCATCATCTTGTTCTCTTT+TGG + chr1_2:9414785-9414804 Msa0054690:CDS 30.0%
AATCTGATTCTCTCAACAAA+TGG + chr1_2:9414895-9414914 Msa0054690:CDS 30.0%
ATCTGATTCTCTCAACAAAT+GGG + chr1_2:9414896-9414915 Msa0054690:CDS 30.0%
AAAACAAAATACCAAGATGG+TGG - chr1_2:9415206-9415225 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG + chr1_2:9415439-9415458 Msa0054690:CDS 30.0%
ATTAGGATTAAGATTGGGAT+TGG + chr1_2:9415754-9415773 Msa0054690:three_prime_UTR 30.0%
! GCAGAAATTATGGATGATTT+TGG - chr1_2:9414685-9414704 None:intergenic 30.0%
CAACATTTGCAGAAAAACAA+TGG + chr1_2:9414749-9414768 Msa0054690:exon 30.0%
! TTCATCATCTTGTTCTCTTT+TGG + chr1_2:9414785-9414804 Msa0054690:CDS 30.0%
AATCTGATTCTCTCAACAAA+TGG + chr1_2:9414895-9414914 Msa0054690:CDS 30.0%
ATCTGATTCTCTCAACAAAT+GGG + chr1_2:9414896-9414915 Msa0054690:CDS 30.0%
AAAACAAAATACCAAGATGG+TGG - chr1_2:9415206-9415225 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG + chr1_2:9415439-9415458 Msa0054690:CDS 30.0%
ATTAGGATTAAGATTGGGAT+TGG + chr1_2:9415754-9415773 Msa0054690:three_prime_UTR 30.0%
ATTTGCAGAAAAACAATGGC+TGG + chr1_2:9414753-9414772 Msa0054690:exon 35.0%
!! TTGGTTCTTGTTGTTCTCTT+TGG + chr1_2:9414804-9414823 Msa0054690:CDS 35.0%
TCAGTTTGGAAATATGAAGC+TGG + chr1_2:9415328-9415347 Msa0054690:intron 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG + chr1_2:9415357-9415376 Msa0054690:CDS 35.0%
CCATCATTGTAGTGTTTGAT+GGG - chr1_2:9415412-9415431 None:intergenic 35.0%
CCATCAAACACTACAATGAT+GGG + chr1_2:9415410-9415429 Msa0054690:CDS 35.0%
TACTACATCAGTGGAGAAAA+GGG + chr1_2:9415469-9415488 Msa0054690:CDS 35.0%
TTCAAATCAGAAAAGCCACA+TGG - chr1_2:9415695-9415714 None:intergenic 35.0%
ATTTGCAGAAAAACAATGGC+TGG + chr1_2:9414753-9414772 Msa0054690:exon 35.0%
!! TTGGTTCTTGTTGTTCTCTT+TGG + chr1_2:9414804-9414823 Msa0054690:CDS 35.0%
TCAGTTTGGAAATATGAAGC+TGG + chr1_2:9415328-9415347 Msa0054690:intron 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG + chr1_2:9415357-9415376 Msa0054690:CDS 35.0%
CCATCATTGTAGTGTTTGAT+GGG - chr1_2:9415412-9415431 None:intergenic 35.0%
CCATCAAACACTACAATGAT+GGG + chr1_2:9415410-9415429 Msa0054690:CDS 35.0%
TACTACATCAGTGGAGAAAA+GGG + chr1_2:9415469-9415488 Msa0054690:CDS 35.0%
TTCAAATCAGAAAAGCCACA+TGG - chr1_2:9415695-9415714 None:intergenic 35.0%
AGAGAATCAGATTCCGAAGA+AGG - chr1_2:9414888-9414907 None:intergenic 40.0%
TCAAGTGTTCGTTTCCAAGT+TGG + chr1_2:9414921-9414940 Msa0054690:CDS 40.0%
TACTTAGATGGTCTCCAACT+TGG - chr1_2:9414938-9414957 None:intergenic 40.0%
!!! GTAGTGTTTGATGGGTTTTG+AGG - chr1_2:9415404-9415423 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG + chr1_2:9415409-9415428 Msa0054690:CDS 40.0%
CCCATCATTGTAGTGTTTGA+TGG - chr1_2:9415413-9415432 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG - chr1_2:9415466-9415485 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG + chr1_2:9415468-9415487 Msa0054690:CDS 40.0%
AGAAAAGGGTCATTGTGAGA+AGG + chr1_2:9415483-9415502 Msa0054690:CDS 40.0%
GAAAAGGGTCATTGTGAGAA+GGG + chr1_2:9415484-9415503 Msa0054690:CDS 40.0%
TGTGGTTGTCATGAGTCTAA+GGG + chr1_2:9415519-9415538 Msa0054690:CDS 40.0%
GCTGGTGAAAAAGCAACAAT+GGG - chr1_2:9415556-9415575 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG - chr1_2:9415557-9415576 None:intergenic 40.0%
AAAACAGTTGCACCACTTGT+TGG - chr1_2:9415631-9415650 None:intergenic 40.0%
AGAGAATCAGATTCCGAAGA+AGG - chr1_2:9414888-9414907 None:intergenic 40.0%
TCAAGTGTTCGTTTCCAAGT+TGG + chr1_2:9414921-9414940 Msa0054690:CDS 40.0%
TACTTAGATGGTCTCCAACT+TGG - chr1_2:9414938-9414957 None:intergenic 40.0%
!!! GTAGTGTTTGATGGGTTTTG+AGG - chr1_2:9415404-9415423 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG + chr1_2:9415409-9415428 Msa0054690:CDS 40.0%
CCCATCATTGTAGTGTTTGA+TGG - chr1_2:9415413-9415432 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG - chr1_2:9415466-9415485 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG + chr1_2:9415468-9415487 Msa0054690:CDS 40.0%
AGAAAAGGGTCATTGTGAGA+AGG + chr1_2:9415483-9415502 Msa0054690:CDS 40.0%
GAAAAGGGTCATTGTGAGAA+GGG + chr1_2:9415484-9415503 Msa0054690:CDS 40.0%
TGTGGTTGTCATGAGTCTAA+GGG + chr1_2:9415519-9415538 Msa0054690:CDS 40.0%
GCTGGTGAAAAAGCAACAAT+GGG - chr1_2:9415556-9415575 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG - chr1_2:9415557-9415576 None:intergenic 40.0%
AAAACAGTTGCACCACTTGT+TGG - chr1_2:9415631-9415650 None:intergenic 40.0%
! TGGTTGTGCTTTTGCAGCTA+AGG + chr1_2:9414824-9414843 Msa0054690:CDS 45.0%
GCAGCTAAGGATATCTTGCT+TGG + chr1_2:9414837-9414856 Msa0054690:CDS 45.0%
GCTAAGGATATCTTGCTTGG+TGG + chr1_2:9414840-9414859 Msa0054690:CDS 45.0%
! TTGGTGGCAAAACTGATGCA+TGG + chr1_2:9414856-9414875 Msa0054690:CDS 45.0%
TGGCAAAACTGATGCATGGA+AGG + chr1_2:9414860-9414879 Msa0054690:CDS 45.0%
TGCATGGAAGGTTCCTTCTT+CGG + chr1_2:9414872-9414891 Msa0054690:CDS 45.0%
GGTCCATACTACTACATCAG+TGG + chr1_2:9415460-9415479 Msa0054690:CDS 45.0%
CTGTGGTTGTCATGAGTCTA+AGG + chr1_2:9415518-9415537 Msa0054690:CDS 45.0%
GTGGTTGTCATGAGTCTAAG+GGG + chr1_2:9415520-9415539 Msa0054690:CDS 45.0%
TGGTTGTCATGAGTCTAAGG+GGG + chr1_2:9415521-9415540 Msa0054690:CDS 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG + chr1_2:9415634-9415653 Msa0054690:CDS 45.0%
!! TAGGAGTGTTTGTTGCCATG+TGG + chr1_2:9415677-9415696 Msa0054690:CDS 45.0%
! TGGTTGTGCTTTTGCAGCTA+AGG + chr1_2:9414824-9414843 Msa0054690:CDS 45.0%
GCAGCTAAGGATATCTTGCT+TGG + chr1_2:9414837-9414856 Msa0054690:CDS 45.0%
GCTAAGGATATCTTGCTTGG+TGG + chr1_2:9414840-9414859 Msa0054690:CDS 45.0%
! TTGGTGGCAAAACTGATGCA+TGG + chr1_2:9414856-9414875 Msa0054690:CDS 45.0%
TGGCAAAACTGATGCATGGA+AGG + chr1_2:9414860-9414879 Msa0054690:CDS 45.0%
TGCATGGAAGGTTCCTTCTT+CGG + chr1_2:9414872-9414891 Msa0054690:CDS 45.0%
GGTCCATACTACTACATCAG+TGG + chr1_2:9415460-9415479 Msa0054690:CDS 45.0%
CTGTGGTTGTCATGAGTCTA+AGG + chr1_2:9415518-9415537 Msa0054690:CDS 45.0%
GTGGTTGTCATGAGTCTAAG+GGG + chr1_2:9415520-9415539 Msa0054690:CDS 45.0%
TGGTTGTCATGAGTCTAAGG+GGG + chr1_2:9415521-9415540 Msa0054690:CDS 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG + chr1_2:9415634-9415653 Msa0054690:CDS 45.0%
!! TAGGAGTGTTTGTTGCCATG+TGG + chr1_2:9415677-9415696 Msa0054690:CDS 45.0%
GAAGGGTCAGAAGCTTACTG+TGG + chr1_2:9415501-9415520 Msa0054690:CDS 50.0%
GGTTGTCATGAGTCTAAGGG+GGG + chr1_2:9415522-9415541 Msa0054690:CDS 50.0%
GTTGTCATGAGTCTAAGGGG+GGG + chr1_2:9415523-9415542 Msa0054690:CDS 50.0%
CCATCAACTTCAGCTGGTGA+AGG - chr1_2:9415580-9415599 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG + chr1_2:9415577-9415596 Msa0054690:CDS 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG + chr1_2:9415637-9415656 Msa0054690:CDS 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG + chr1_2:9415640-9415659 Msa0054690:CDS 50.0%
! GCAAGGTGGTGGTGTATTTG+TGG + chr1_2:9415651-9415670 Msa0054690:CDS 50.0%
GGTGGTGTATTTGTGGCTGT+AGG + chr1_2:9415658-9415677 Msa0054690:CDS 50.0%
GAAGGGTCAGAAGCTTACTG+TGG + chr1_2:9415501-9415520 Msa0054690:CDS 50.0%
GGTTGTCATGAGTCTAAGGG+GGG + chr1_2:9415522-9415541 Msa0054690:CDS 50.0%
GTTGTCATGAGTCTAAGGGG+GGG + chr1_2:9415523-9415542 Msa0054690:CDS 50.0%
CCATCAACTTCAGCTGGTGA+AGG - chr1_2:9415580-9415599 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG + chr1_2:9415577-9415596 Msa0054690:CDS 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG + chr1_2:9415637-9415656 Msa0054690:CDS 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG + chr1_2:9415640-9415659 Msa0054690:CDS 50.0%
! GCAAGGTGGTGGTGTATTTG+TGG + chr1_2:9415651-9415670 Msa0054690:CDS 50.0%
GGTGGTGTATTTGTGGCTGT+AGG + chr1_2:9415658-9415677 Msa0054690:CDS 50.0%
TGAGTCTAAGGGGGGGAAGT+AGG + chr1_2:9415530-9415549 Msa0054690:CDS 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG - chr1_2:9415574-9415593 None:intergenic 55.0%
GCTGGACCATCAACTTCAGC+TGG - chr1_2:9415586-9415605 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG + chr1_2:9415586-9415605 Msa0054690:CDS 55.0%
GTTGCTCCAGCTCCAACAAG+TGG + chr1_2:9415616-9415635 Msa0054690:CDS 55.0%
! GTTGCACCACTTGTTGGAGC+TGG - chr1_2:9415625-9415644 None:intergenic 55.0%
TGAGTCTAAGGGGGGGAAGT+AGG + chr1_2:9415530-9415549 Msa0054690:CDS 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG - chr1_2:9415574-9415593 None:intergenic 55.0%
GCTGGACCATCAACTTCAGC+TGG - chr1_2:9415586-9415605 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG + chr1_2:9415586-9415605 Msa0054690:CDS 55.0%
GTTGCTCCAGCTCCAACAAG+TGG + chr1_2:9415616-9415635 Msa0054690:CDS 55.0%
! GTTGCACCACTTGTTGGAGC+TGG - chr1_2:9415625-9415644 None:intergenic 55.0%
GGAGCAACAGCTGAGCCAGC+TGG - chr1_2:9415604-9415623 None:intergenic 65.0%
GGAGCAACAGCTGAGCCAGC+TGG - chr1_2:9415604-9415623 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9414673 9415958 9414673 ID=Msa0054690;Name=Msa0054690
chr1_2 mRNA 9414673 9415958 9414673 ID=Msa0054690-mRNA-1;Parent=Msa0054690;Name=Msa0054690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=95|1|1|1|1|1|2|250|187
chr1_2 exon 9414673 9414954 9414673 ID=Msa0054690-mRNA-1:exon:3443;Parent=Msa0054690-mRNA-1
chr1_2 exon 9415332 9415958 9415332 ID=Msa0054690-mRNA-1:exon:3444;Parent=Msa0054690-mRNA-1
chr1_2 five_prime_UTR 9414673 9414767 9414673 ID=Msa0054690-mRNA-1:five_prime_utr;Parent=Msa0054690-mRNA-1
chr1_2 CDS 9414768 9414954 9414768 ID=Msa0054690-mRNA-1:cds;Parent=Msa0054690-mRNA-1
chr1_2 CDS 9415332 9415708 9415332 ID=Msa0054690-mRNA-1:cds;Parent=Msa0054690-mRNA-1
chr1_2 three_prime_UTR 9415709 9415958 9415709 ID=Msa0054690-mRNA-1:three_prime_utr;Parent=Msa0054690-mRNA-1
Gene Sequence

>Msa0054690

ATGGCTGGTTCGTCTTCTTCATCATCTTGTTCTCTTTTGGTTCTTGTTGTTCTCTTTGGTTGTGCTTTTGCAGCTAAGGATATCTTGCTTGGTGGCAAAACTGATGCATGGAAGGTTCCTTCTTCGGAATCTGATTCTCTCAACAAATGGGCTTCAAGTGTTCGTTTCCAAGTTGGAGACCATCTAATTTGGAAATATGAAGCTGGAAAAGATTCTGTTTTGCAAGTGAGTAAGGAAGATTATGATAGCTGCAACACCTCAAAACCCATCAAACACTACAATGATGGGAACACTAAAGTGAGATTTGATCATTCTGGTCCATACTACTACATCAGTGGAGAAAAGGGTCATTGTGAGAAGGGTCAGAAGCTTACTGTGGTTGTCATGAGTCTAAGGGGGGGAAGTAGGCCCATTGTTGCTTTTTCACCAGCACCTTCACCAGCTGAAGTTGATGGTCCAGCTGGCTCAGCTGTTGCTCCAGCTCCAACAAGTGGTGCAACTGTTTTGCAAGGTGGTGGTGTATTTGTGGCTGTAGGAGTGTTTGTTGCCATGTGGCTTTTCTGA

Protein sequence

>Msa0054690

MAGSSSSSSCSLLVLVVLFGCAFAAKDILLGGKTDAWKVPSSESDSLNKWASSVRFQVGDHLIWKYEAGKDSVLQVSKEDYDSCNTSKPIKHYNDGNTKVRFDHSGPYYYISGEKGHCEKGQKLTVVVMSLRGGSRPIVAFSPAPSPAEVDGPAGSAVAPAPTSGATVLQGGGVFVAVGVFVAMWLF*