Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718750 | XP_039690508.1 | 97.239 | 326 | 9 | 0 | 1 | 326 | 1 | 326 | 0.0 | 663 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718750 | sp|Q9FHK0|SKI31_ARATH | 58.410 | 327 | 124 | 5 | 1 | 326 | 1 | 316 | 1.20e-126 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718750 | G7K412 | 96.626 | 326 | 9 | 1 | 1 | 326 | 1 | 324 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031340 | Msa0718750 | 0.803021 | 4.252595e-49 | -8.615850e-47 |
| Msa0114060 | Msa0718750 | 0.809804 | 1.578492e-50 | -8.615850e-47 |
| Msa0672690 | Msa0718750 | 0.801818 | 7.524268e-49 | -8.615850e-47 |
| Msa0711100 | Msa0718750 | 0.807712 | 4.421432e-50 | -8.615850e-47 |
| Msa0718750 | Msa0729720 | 0.803649 | 3.152464e-49 | -8.615850e-47 |
| Msa0718750 | Msa0740510 | 0.810469 | 1.134800e-50 | -8.615850e-47 |
| Msa0718750 | Msa0820770 | 0.811876 | 5.621541e-51 | -8.615850e-47 |
| Msa0718750 | Msa0832150 | 0.809252 | 2.074673e-50 | -8.615850e-47 |
| Msa0718750 | Msa0844420 | 0.811285 | 7.557148e-51 | -8.615850e-47 |
| Msa0718750 | Msa0844490 | 0.820987 | 5.128468e-53 | -8.615850e-47 |
| Msa0718750 | Msa0861090 | 0.811951 | 5.415900e-51 | -8.615850e-47 |
| Msa0718750 | Msa0971090 | 0.804598 | 2.000635e-49 | -8.615850e-47 |
| Msa0718750 | Msa1043390 | 0.803069 | 4.156700e-49 | -8.615850e-47 |
| Msa0718750 | Msa1211140 | -0.815178 | 1.055798e-51 | -8.615850e-47 |
| Msa0718750 | Msa1242580 | -0.800288 | 1.546279e-48 | -8.615850e-47 |
| Msa0718750 | Msa1299290 | -0.805535 | 1.273914e-49 | -8.615850e-47 |
| Msa0718750 | Msa1310770 | -0.819721 | 1.000740e-52 | -8.615850e-47 |
| Msa0718750 | Msa1331320 | 0.802278 | 6.052756e-49 | -8.615850e-47 |
| Msa0718750 | Msa1370070 | -0.802920 | 4.461478e-49 | -8.615850e-47 |
| Msa0718750 | Msa1374470 | 0.804870 | 1.755360e-49 | -8.615850e-47 |
| Msa0123560 | Msa0718750 | 0.809015 | 2.331838e-50 | -8.615850e-47 |
| Msa0150800 | Msa0718750 | 0.831614 | 1.510544e-55 | -8.615850e-47 |
| Msa0180500 | Msa0718750 | 0.800977 | 1.118809e-48 | -8.615850e-47 |
| Msa0436760 | Msa0718750 | 0.802183 | 6.329852e-49 | -8.615850e-47 |
| Msa0455040 | Msa0718750 | 0.815035 | 1.136126e-51 | -8.615850e-47 |
| Msa0291500 | Msa0718750 | 0.820985 | 5.136121e-53 | -8.615850e-47 |
| Msa0334360 | Msa0718750 | 0.808325 | 3.273669e-50 | -8.615850e-47 |
| Msa0359030 | Msa0718750 | 0.815604 | 8.490723e-52 | -8.615850e-47 |
| Msa0556100 | Msa0718750 | 0.803583 | 3.252988e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718750 | MtrunA17_Chr5g0408141 | 96.626 | 326 | 9 | 1 | 1 | 326 | 1 | 324 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718750 | AT5G45360.1 | 58.410 | 327 | 124 | 5 | 1 | 326 | 1 | 316 | 1.22e-127 | 367 |
Find 131 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACCCCGATAAATTTATT+TGG | 0.138496 | 5_1:+13056649 | Msa0718750:three_prime_UTR |
| ACCCCAAATCAAATTTATTT+TGG | 0.144182 | 5_1:-13056766 | None:intergenic |
| AGTACTCCTTAAACTCATTT+TGG | 0.215044 | 5_1:-13054971 | None:intergenic |
| AAGCTGCCAAAATGAGTTTA+AGG | 0.249725 | 5_1:+13054965 | Msa0718750:CDS |
| TGCCAAAATAAATTTGATTT+GGG | 0.254645 | 5_1:+13056764 | Msa0718750:three_prime_UTR |
| TGATGAGGAAGAACCATTTA+TGG | 0.255998 | 5_1:+13056074 | Msa0718750:CDS |
| GTGCCAAAATAAATTTGATT+TGG | 0.274612 | 5_1:+13056763 | Msa0718750:three_prime_UTR |
| CCACTTCCAGAAGAGCTTAA+TGG | 0.281083 | 5_1:-13056287 | None:intergenic |
| GCCCATACGCAACATGTTTC+GGG | 0.285765 | 5_1:+13052592 | Msa0718750:five_prime_UTR |
| CACTTCCAGAAGAGCTTAAT+GGG | 0.293420 | 5_1:-13056286 | None:intergenic |
| TCTCGGCATCACGGCATTAT+TGG | 0.307586 | 5_1:-13053439 | None:intergenic |
| TGATCCCCATTAAGCTCTTC+TGG | 0.310481 | 5_1:+13056281 | Msa0718750:exon |
| AGCCCATACGCAACATGTTT+CGG | 0.324387 | 5_1:+13052591 | Msa0718750:five_prime_UTR |
| CACAACCGTCATTCGAATTC+CGG | 0.325834 | 5_1:+13052716 | Msa0718750:five_prime_UTR |
| AAACGAAATTGAAGGTTGTT+AGG | 0.330179 | 5_1:-13052765 | None:intergenic |
| GTGAACGACCATGCTTGTTC+TGG | 0.333231 | 5_1:+13055444 | Msa0718750:CDS |
| CAACCCCGATAAATTTATTT+GGG | 0.333376 | 5_1:+13056650 | Msa0718750:three_prime_UTR |
| ACATGCTCGTACTACCAAAT+TGG | 0.338981 | 5_1:+13055471 | Msa0718750:CDS |
| TTTATGGGATCTGGCCGTTT+TGG | 0.340506 | 5_1:+13056090 | Msa0718750:CDS |
| TCGAATGACGGTTGTGGAAT+CGG | 0.341181 | 5_1:-13052709 | None:intergenic |
| AATGGAAATCCGAGATATAT+TGG | 0.341719 | 5_1:-13056345 | None:intergenic |
| TTCAACATTAATGCAATCAT+TGG | 0.358211 | 5_1:+13056592 | Msa0718750:three_prime_UTR |
| AAACGGCCAGATCCCATAAA+TGG | 0.361722 | 5_1:-13056087 | None:intergenic |
| AGAATATGATGGAAAAGTTC+TGG | 0.367529 | 5_1:-13053495 | None:intergenic |
| ATTATTATCGCCATCTGAAA+TGG | 0.377142 | 5_1:+13055736 | Msa0718750:CDS |
| TGAACGGTTGGATTTAGTTC+GGG | 0.377420 | 5_1:-13052624 | None:intergenic |
| GTGTGCCCAAATAAATTTAT+CGG | 0.381642 | 5_1:-13056655 | None:intergenic |
| ACTTATGTGCAATTCTAACT+TGG | 0.384185 | 5_1:+13056624 | Msa0718750:three_prime_UTR |
| TTATTGGCACCATAGTTCTT+AGG | 0.393562 | 5_1:-13053423 | None:intergenic |
| AGTCCCTTATCTTCCTTGTC+GGG | 0.396432 | 5_1:-13054644 | None:intergenic |
| CGAATGACGGTTGTGGAATC+GGG | 0.407158 | 5_1:-13052708 | None:intergenic |
| CAGTCCCTTATCTTCCTTGT+CGG | 0.408571 | 5_1:-13054645 | None:intergenic |
| ATGAACGGTTGGATTTAGTT+CGG | 0.409979 | 5_1:-13052625 | None:intergenic |
| TTCGTCTTCGTCGTCTGAAA+AGG | 0.410222 | 5_1:-13052811 | None:intergenic |
| AAACCAGTTTCAATCCTTCT+CGG | 0.414015 | 5_1:-13053456 | None:intergenic |
| ATGAGGTGCTTGACTTCTCT+TGG | 0.415675 | 5_1:-13055012 | None:intergenic |
| TTTCAGTTTCTCCTGGCATA+AGG | 0.416732 | 5_1:+13056366 | Msa0718750:three_prime_UTR |
| CAGAGTAGCATACAGTGTTC+TGG | 0.417535 | 5_1:+13053387 | Msa0718750:CDS |
| AGACTAAAGAACAAGAAATA+AGG | 0.422808 | 5_1:-13054234 | None:intergenic |
| TCATCTAAGCCTAAGAACTA+TGG | 0.425611 | 5_1:+13053414 | Msa0718750:CDS |
| TGTGCCCAAATAAATTTATC+GGG | 0.430177 | 5_1:-13056654 | None:intergenic |
| ATGCCGAGAAGGATTGAAAC+TGG | 0.446613 | 5_1:+13053453 | Msa0718750:CDS |
| GATGAGGAAGAACCATTTAT+GGG | 0.447986 | 5_1:+13056075 | Msa0718750:CDS |
| GACAGCGCGAGCTTATTTGC+TGG | 0.449521 | 5_1:+13056208 | Msa0718750:intron |
| CCATTAAGCTCTTCTGGAAG+TGG | 0.460666 | 5_1:+13056287 | Msa0718750:three_prime_UTR |
| AACTTGTAAAGAAGTGGTTA+TGG | 0.462279 | 5_1:+13055661 | Msa0718750:CDS |
| GAAGAACCATTTATGGGATC+TGG | 0.467961 | 5_1:+13056081 | Msa0718750:CDS |
| AGAGAGAATGCTACGGTGGC+CGG | 0.471581 | 5_1:-13052735 | None:intergenic |
| TTAGTCTTACTGTAAAACTT+TGG | 0.475306 | 5_1:+13056397 | Msa0718750:three_prime_UTR |
| TATGCCAGGAGAAACTGAAA+TGG | 0.475979 | 5_1:-13056363 | None:intergenic |
| ACATTTAGACTTACAGAGTC+GGG | 0.479185 | 5_1:-13055761 | None:intergenic |
| ACAGCGCGAGCTTATTTGCT+GGG | 0.484660 | 5_1:+13056209 | Msa0718750:intron |
| CGATGAAACTTGTAAAGAAG+TGG | 0.486450 | 5_1:+13055655 | Msa0718750:CDS |
| ATTTCCATTTCAGTTTCTCC+TGG | 0.491436 | 5_1:+13056359 | Msa0718750:three_prime_UTR |
| GTTCAGATATTGTATGCGAT+GGG | 0.491449 | 5_1:+13054611 | Msa0718750:intron |
| TGAACGACCATGCTTGTTCT+GGG | 0.499002 | 5_1:+13055445 | Msa0718750:CDS |
| GACCCGAAACATGTTGCGTA+TGG | 0.506014 | 5_1:-13052594 | None:intergenic |
| ACAGAAACTTAAGAATATGA+TGG | 0.506417 | 5_1:-13053506 | None:intergenic |
| TCTCATCATGGAAAAGTAGC+AGG | 0.510668 | 5_1:+13055403 | Msa0718750:CDS |
| GAATTGCACATAAGTCATAA+AGG | 0.511675 | 5_1:-13056616 | None:intergenic |
| GTCCCTTATCTTCCTTGTCG+GGG | 0.511970 | 5_1:-13054643 | None:intergenic |
| GAGAAGACTGGACAAGTTCA+TGG | 0.514490 | 5_1:+13055510 | Msa0718750:CDS |
| ATACAATTGTGCTGATGAAA+AGG | 0.517506 | 5_1:+13056232 | Msa0718750:CDS |
| GTTGTGGAATCGGGACGAAA+CGG | 0.519301 | 5_1:-13052699 | None:intergenic |
| TGATGAGACTTGATCAGCTA+AGG | 0.524128 | 5_1:-13055388 | None:intergenic |
| CGACCCTACTCAATGAGATA+AGG | 0.524194 | 5_1:+13056465 | Msa0718750:three_prime_UTR |
| GGAAGATAAGGGACTGCCCA+TGG | 0.524763 | 5_1:+13054652 | Msa0718750:CDS |
| TGTTCAGATATTGTATGCGA+TGG | 0.526921 | 5_1:+13054610 | Msa0718750:intron |
| GCAAGGTGTTGCAGCTGATG+AGG | 0.527897 | 5_1:+13056059 | Msa0718750:CDS |
| TAATGATGAAGATGATGATT+CGG | 0.529753 | 5_1:-13052659 | None:intergenic |
| CGGAATTCGAATGACGGTTG+TGG | 0.532904 | 5_1:-13052715 | None:intergenic |
| CTTATGTGCAATTCTAACTT+GGG | 0.536685 | 5_1:+13056625 | Msa0718750:three_prime_UTR |
| CGGTTGGATTTAGTTCGGGT+TGG | 0.540504 | 5_1:-13052620 | None:intergenic |
| AGGAGCTTGAAGATACTTTG+AGG | 0.545616 | 5_1:+13056252 | Msa0718750:CDS |
| CTGAAAAGGTCATGGTGTCA+TGG | 0.548573 | 5_1:-13052797 | None:intergenic |
| CACGCCTTATCTCATTGAGT+AGG | 0.550020 | 5_1:-13056469 | None:intergenic |
| GTCGGCTACATGATTGAGTA+GGG | 0.550167 | 5_1:-13056446 | None:intergenic |
| AAATCTAGAAACGAAATTGA+AGG | 0.552336 | 5_1:-13052773 | None:intergenic |
| TAAGCAGATATCCTTATGCC+AGG | 0.556755 | 5_1:-13056377 | None:intergenic |
| GGTCGGCTACATGATTGAGT+AGG | 0.558599 | 5_1:-13056447 | None:intergenic |
| TAGCTGATCAAGTCTCATCA+TGG | 0.559014 | 5_1:+13055391 | Msa0718750:CDS |
| ACTGAACATCCAATATATCT+CGG | 0.560903 | 5_1:+13056336 | Msa0718750:three_prime_UTR |
| TCGAGATGAGTTTACCAAAA+CGG | 0.561485 | 5_1:-13056104 | None:intergenic |
| ACCCGAAACATGTTGCGTAT+GGG | 0.564019 | 5_1:-13052593 | None:intergenic |
| AGATATATTGGATGTTCAGT+AGG | 0.565809 | 5_1:-13056333 | None:intergenic |
| ACAAACGAAAAGCTCATCCT+CGG | 0.568828 | 5_1:-13055687 | None:intergenic |
| GACATTTAGACTTACAGAGT+CGG | 0.570991 | 5_1:-13055762 | None:intergenic |
| TCTTAAGTTTCTGTCATCTG+AGG | 0.574049 | 5_1:+13053515 | Msa0718750:CDS |
| GCCAAAATAAATTTGATTTG+GGG | 0.574353 | 5_1:+13056765 | Msa0718750:three_prime_UTR |
| TTCAATCCTTCTCGGCATCA+CGG | 0.574754 | 5_1:-13053448 | None:intergenic |
| ACGCCTTATCTCATTGAGTA+GGG | 0.579425 | 5_1:-13056468 | None:intergenic |
| CAAACGAAAAGCTCATCCTC+GGG | 0.580027 | 5_1:-13055686 | None:intergenic |
| TCAAGCACCTCATCCTTCAC+AGG | 0.582032 | 5_1:+13055022 | Msa0718750:CDS |
| TCCCTTATCTTCCTTGTCGG+GGG | 0.588185 | 5_1:-13054642 | None:intergenic |
| GAAGAGAAAACGCATAGAAG+AGG | 0.589132 | 5_1:+13053350 | Msa0718750:CDS |
| AGCTCAATTTCTCGAATCAG+AGG | 0.589170 | 5_1:+13052839 | Msa0718750:CDS |
| CTCATCATGGAAAAGTAGCA+GGG | 0.589420 | 5_1:+13055404 | Msa0718750:CDS |
| CTTATCTCATTGAGTAGGGT+CGG | 0.590504 | 5_1:-13056464 | None:intergenic |
| TGGAAAGTGAAATGAACGGT+TGG | 0.595278 | 5_1:-13052636 | None:intergenic |
| GAATACCTTGTCAGAGACCT+CGG | 0.602536 | 5_1:-13052868 | None:intergenic |
| GAGTCGGGCTCCATTTCAGA+TGG | 0.607714 | 5_1:-13055746 | None:intergenic |
| GCTACATGATTGAGTAGGGT+CGG | 0.610694 | 5_1:-13056442 | None:intergenic |
| TTCAGATATTGTATGCGATG+GGG | 0.611181 | 5_1:+13054612 | Msa0718750:intron |
| TTCGTCGTCTGAAAAGGTCA+TGG | 0.614842 | 5_1:-13052805 | None:intergenic |
| ATAATGCCGTGATGCCGAGA+AGG | 0.614946 | 5_1:+13053442 | Msa0718750:CDS |
| ATATGATGGAAAAGTTCTGG+TGG | 0.615241 | 5_1:-13053492 | None:intergenic |
| ATGTCTTCCCAGAACAAGCA+TGG | 0.615251 | 5_1:-13055452 | None:intergenic |
| GCAGGAAGAGGTAAATGTAG+AGG | 0.616287 | 5_1:+13053317 | Msa0718750:intron |
| CGGGACGAAACGGTAAAAGA+TGG | 0.617252 | 5_1:-13052689 | None:intergenic |
| CCTCTCCGAGGTCTCTGACA+AGG | 0.620297 | 5_1:+13052863 | Msa0718750:CDS |
| CACACTACCTGTGAAGGATG+AGG | 0.623723 | 5_1:-13055029 | None:intergenic |
| TGATGAAGATGATGATTCGG+TGG | 0.640060 | 5_1:-13052656 | None:intergenic |
| CTGCATCTGATGAAGCATTG+TGG | 0.644566 | 5_1:+13054275 | Msa0718750:CDS |
| AAATTTCAGGAGCAGCAGCA+AGG | 0.646314 | 5_1:+13056042 | Msa0718750:intron |
| AGAAGTGGTTATGGATCCCG+AGG | 0.648450 | 5_1:+13055670 | Msa0718750:CDS |
| CGAATCAGAGGTCCTCTCCG+AGG | 0.654068 | 5_1:+13052851 | Msa0718750:CDS |
| GTTTCTCACACTACCTGTGA+AGG | 0.656511 | 5_1:-13055035 | None:intergenic |
| CAGGGGCCTCAGTGATACAG+TGG | 0.666319 | 5_1:+13055422 | Msa0718750:CDS |
| CATATGCTTTATGCTAACAG+TGG | 0.672578 | 5_1:+13056522 | Msa0718750:three_prime_UTR |
| ATACGCAACATGTTTCGGGT+CGG | 0.673406 | 5_1:+13052596 | Msa0718750:five_prime_UTR |
| CAGAAGAGAGAATGCTACGG+TGG | 0.674926 | 5_1:-13052739 | None:intergenic |
| GTGCCCAAATAAATTTATCG+GGG | 0.676054 | 5_1:-13056653 | None:intergenic |
| TCATCATGGAAAAGTAGCAG+GGG | 0.680205 | 5_1:+13055405 | Msa0718750:CDS |
| AAACAGAAGAGAGAATGCTA+CGG | 0.693724 | 5_1:-13052742 | None:intergenic |
| GGTGGCCGGAATTCGAATGA+CGG | 0.693941 | 5_1:-13052721 | None:intergenic |
| TGTTCAGTAGGCAAATGATG+AGG | 0.699336 | 5_1:-13056321 | None:intergenic |
| ACTTCCAGAAGAGCTTAATG+GGG | 0.726511 | 5_1:-13056285 | None:intergenic |
| GCAGCGTGATGAAAATGACA+TGG | 0.752903 | 5_1:+13054929 | Msa0718750:intron |
| CCTTGTCAGAGACCTCGGAG+AGG | 0.757708 | 5_1:-13052863 | None:intergenic |
| CGTTCACCACTGTATCACTG+AGG | 0.758311 | 5_1:-13055428 | None:intergenic |
| TCGGTGGAAAGTGAAATGAA+CGG | 0.811460 | 5_1:-13052640 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTACAAAATTAATTCAT+TGG | + | chr5_1:13053243-13053262 | Msa0718750:intron | 10.0% |
| !! | GAAAATTAATAGTGAATAAT+TGG | - | chr5_1:13052893-13052912 | None:intergenic | 15.0% |
| !! | CAAATTATAATCAATTCTAA+AGG | - | chr5_1:13053674-13053693 | None:intergenic | 15.0% |
| !!! | ATTGATTATAATTTGAAGTT+AGG | + | chr5_1:13053679-13053698 | Msa0718750:intron | 15.0% |
| !!! | TATGTTGATAAACAAATTAA+TGG | + | chr5_1:13053779-13053798 | Msa0718750:intron | 15.0% |
| !! | TAGTAAAGTAAGAAAATAAA+TGG | - | chr5_1:13054030-13054049 | None:intergenic | 15.0% |
| !!! | ATAAAGCAAGAATTTTTTTC+TGG | - | chr5_1:13052979-13052998 | None:intergenic | 20.0% |
| !!! | AAAATTCTTGCTTTATTTGT+TGG | + | chr5_1:13052983-13053002 | Msa0718750:intron | 20.0% |
| !!! | TGTTGGTTTATTTGAAATTA+TGG | + | chr5_1:13053000-13053019 | Msa0718750:intron | 20.0% |
| !!! | TTATTGGTTTAAATCATTGT+GGG | + | chr5_1:13053898-13053917 | Msa0718750:intron | 20.0% |
| !!! | TGACTATATAGTTTTTTGAT+GGG | + | chr5_1:13054204-13054223 | Msa0718750:intron | 20.0% |
| !! | AAATAAAAACATCTCCAATT+TGG | - | chr5_1:13055488-13055507 | None:intergenic | 20.0% |
| !!! | ACATTGAATTTTAAATCCTT+TGG | + | chr5_1:13055573-13055592 | Msa0718750:intron | 20.0% |
| !! | AAGCTATAATTGTAAAACAA+AGG | - | chr5_1:13055994-13056013 | None:intergenic | 20.0% |
| !! | TCTAAAAACAAAATGATCAA+GGG | - | chr5_1:13056134-13056153 | None:intergenic | 20.0% |
| !!! | TTCTAAAAACAAAATGATCA+AGG | - | chr5_1:13056135-13056154 | None:intergenic | 20.0% |
| !!! | TGCCAAAATAAATTTGATTT+GGG | + | chr5_1:13056764-13056783 | Msa0718750:three_prime_UTR | 20.0% |
| ! | TAATGATGAAGATGATGATT+CGG | - | chr5_1:13052662-13052681 | None:intergenic | 25.0% |
| ! | AAATCTAGAAACGAAATTGA+AGG | - | chr5_1:13052776-13052795 | None:intergenic | 25.0% |
| ! | ATGCTGTTAGATTATAGATT+AGG | + | chr5_1:13052938-13052957 | Msa0718750:intron | 25.0% |
| ! | TGCTGTTAGATTATAGATTA+GGG | + | chr5_1:13052939-13052958 | Msa0718750:intron | 25.0% |
| !!! | TATAGATTAGGGTTTTGATT+TGG | + | chr5_1:13052950-13052969 | Msa0718750:intron | 25.0% |
| !!! | ATAGATTAGGGTTTTGATTT+GGG | + | chr5_1:13052951-13052970 | Msa0718750:intron | 25.0% |
| ! | ACCAGAATAAATTGAAACAT+AGG | - | chr5_1:13053031-13053050 | None:intergenic | 25.0% |
| !! | AAAATTGATTCTGACATCTT+TGG | + | chr5_1:13053056-13053075 | Msa0718750:intron | 25.0% |
| !! | CTTCAATTTAGAATCAATTC+CGG | - | chr5_1:13053115-13053134 | None:intergenic | 25.0% |
| ! | ATGCAAAATAAACTGATTAG+TGG | - | chr5_1:13053287-13053306 | None:intergenic | 25.0% |
| ! | ACAGAAACTTAAGAATATGA+TGG | - | chr5_1:13053509-13053528 | None:intergenic | 25.0% |
| ! | AAACAAAATCCATAAAACCA+GGG | - | chr5_1:13053552-13053571 | None:intergenic | 25.0% |
| ! | AAAACAAAATCCATAAAACC+AGG | - | chr5_1:13053553-13053572 | None:intergenic | 25.0% |
| !!! | CTTATTGGTTTAAATCATTG+TGG | + | chr5_1:13053897-13053916 | Msa0718750:intron | 25.0% |
| ! | AAAATTGAACCTACACAAAA+TGG | + | chr5_1:13053932-13053951 | Msa0718750:intron | 25.0% |
| !!! | CTGACTATATAGTTTTTTGA+TGG | + | chr5_1:13054203-13054222 | Msa0718750:intron | 25.0% |
| ! | AGACTAAAGAACAAGAAATA+AGG | - | chr5_1:13054237-13054256 | None:intergenic | 25.0% |
| ! | CAACAAAACTTGAAAATGTA+AGG | - | chr5_1:13054328-13054347 | None:intergenic | 25.0% |
| !!! | TCAAGTTTTGTTGATATTGT+TGG | + | chr5_1:13054335-13054354 | Msa0718750:intron | 25.0% |
| !! | AGCATAGAATAGTTTGATTT+GGG | + | chr5_1:13054364-13054383 | Msa0718750:intron | 25.0% |
| !!! | AATAGTTTGATTTGGGAATT+TGG | + | chr5_1:13054371-13054390 | Msa0718750:intron | 25.0% |
| !! | TTTGCATTTCTATTTTCCTT+TGG | + | chr5_1:13054706-13054725 | Msa0718750:intron | 25.0% |
| !! | TTTTCGTTTGTACAATATCA+GGG | + | chr5_1:13055699-13055718 | Msa0718750:CDS | 25.0% |
| ! | TTTAAACTGTGTTATGAGTT+AGG | + | chr5_1:13055809-13055828 | Msa0718750:intron | 25.0% |
| !! | TCTCATTCATTTGAAATTTC+AGG | + | chr5_1:13056029-13056048 | Msa0718750:intron | 25.0% |
| !!! | TTAGTCTTACTGTAAAACTT+TGG | + | chr5_1:13056397-13056416 | Msa0718750:three_prime_UTR | 25.0% |
| ! | TTCAACATTAATGCAATCAT+TGG | + | chr5_1:13056592-13056611 | Msa0718750:three_prime_UTR | 25.0% |
| ! | GTGCCAAAATAAATTTGATT+TGG | + | chr5_1:13056763-13056782 | Msa0718750:three_prime_UTR | 25.0% |
| !!! | GCCAAAATAAATTTGATTTG+GGG | + | chr5_1:13056765-13056784 | Msa0718750:three_prime_UTR | 25.0% |
| !! | ACCCCAAATCAAATTTATTT+TGG | - | chr5_1:13056769-13056788 | None:intergenic | 25.0% |
| AAACGAAATTGAAGGTTGTT+AGG | - | chr5_1:13052768-13052787 | None:intergenic | 30.0% | |
| GCCTATGTTTCAATTTATTC+TGG | + | chr5_1:13053027-13053046 | Msa0718750:intron | 30.0% | |
| ! | AGTGTAAACTGGTTTATGTT+TGG | - | chr5_1:13053216-13053235 | None:intergenic | 30.0% |
| ! | AAAATGAGTTGAGTGTAAAC+TGG | - | chr5_1:13053227-13053246 | None:intergenic | 30.0% |
| ! | TAAACTGATTAGTGGATGTT+TGG | - | chr5_1:13053279-13053298 | None:intergenic | 30.0% |
| ! | TTTTGCATGAATGTTATTGC+AGG | + | chr5_1:13053299-13053318 | Msa0718750:intron | 30.0% |
| ! | AGAATATGATGGAAAAGTTC+TGG | - | chr5_1:13053498-13053517 | None:intergenic | 30.0% |
| ACATAGCAAGTCACAATTAA+AGG | - | chr5_1:13053604-13053623 | None:intergenic | 30.0% | |
| TCTTGTAACCATTCATGATT+TGG | - | chr5_1:13053828-13053847 | None:intergenic | 30.0% | |
| TCTAATACTCACTCTCTTAT+TGG | + | chr5_1:13053882-13053901 | Msa0718750:intron | 30.0% | |
| TTGAGACTAGAAATCACATT+TGG | - | chr5_1:13054086-13054105 | None:intergenic | 30.0% | |
| CAGCATAGAATAGTTTGATT+TGG | + | chr5_1:13054363-13054382 | Msa0718750:intron | 30.0% | |
| !! | GAATGTATAGCTTTTTCCAT+GGG | - | chr5_1:13054671-13054690 | None:intergenic | 30.0% |
| !! | TGAATGTATAGCTTTTTCCA+TGG | - | chr5_1:13054672-13054691 | None:intergenic | 30.0% |
| ATGGAAAAAGCTATACATTC+AGG | + | chr5_1:13054671-13054690 | Msa0718750:CDS | 30.0% | |
| ! | AAGAGTAATGAAGTATCCAA+AGG | - | chr5_1:13054725-13054744 | None:intergenic | 30.0% |
| TTGACTGAAATACTTAACTC+AGG | + | chr5_1:13054799-13054818 | Msa0718750:intron | 30.0% | |
| ATTCTCCTGTAAACTGAATT+TGG | + | chr5_1:13054844-13054863 | Msa0718750:intron | 30.0% | |
| TAACTCCAAATTCAGTTTAC+AGG | - | chr5_1:13054852-13054871 | None:intergenic | 30.0% | |
| !! | CCTTGATTTGTTAATTTGTG+CGG | + | chr5_1:13054884-13054903 | Msa0718750:intron | 30.0% |
| ! | AGTACTCCTTAAACTCATTT+TGG | - | chr5_1:13054974-13054993 | None:intergenic | 30.0% |
| !! | TATACAGTTCCATTTTTCAG+TGG | - | chr5_1:13055060-13055079 | None:intergenic | 30.0% |
| ! | TTTCTTTTACTTCCTCAATG+TGG | + | chr5_1:13055129-13055148 | Msa0718750:intron | 30.0% |
| ! | TTCTTTTACTTCCTCAATGT+GGG | + | chr5_1:13055130-13055149 | Msa0718750:intron | 30.0% |
| TGCAGAAAATAGAGAGAAAA+TGG | - | chr5_1:13055330-13055349 | None:intergenic | 30.0% | |
| !! | GTTTTTATTTGTGAGAAGAC+TGG | + | chr5_1:13055498-13055517 | Msa0718750:CDS | 30.0% |
| AACTTGTAAAGAAGTGGTTA+TGG | + | chr5_1:13055661-13055680 | Msa0718750:CDS | 30.0% | |
| ! | CTTTTCGTTTGTACAATATC+AGG | + | chr5_1:13055698-13055717 | Msa0718750:CDS | 30.0% |
| ATTATTATCGCCATCTGAAA+TGG | + | chr5_1:13055736-13055755 | Msa0718750:CDS | 30.0% | |
| ! | ATACAATTGTGCTGATGAAA+AGG | + | chr5_1:13056232-13056251 | Msa0718750:CDS | 30.0% |
| AGATATATTGGATGTTCAGT+AGG | - | chr5_1:13056336-13056355 | None:intergenic | 30.0% | |
| ACTGAACATCCAATATATCT+CGG | + | chr5_1:13056336-13056355 | Msa0718750:three_prime_UTR | 30.0% | |
| AATGGAAATCCGAGATATAT+TGG | - | chr5_1:13056348-13056367 | None:intergenic | 30.0% | |
| GAATTGCACATAAGTCATAA+AGG | - | chr5_1:13056619-13056638 | None:intergenic | 30.0% | |
| ACTTATGTGCAATTCTAACT+TGG | + | chr5_1:13056624-13056643 | Msa0718750:three_prime_UTR | 30.0% | |
| CTTATGTGCAATTCTAACTT+GGG | + | chr5_1:13056625-13056644 | Msa0718750:three_prime_UTR | 30.0% | |
| ACAACCCCGATAAATTTATT+TGG | + | chr5_1:13056649-13056668 | Msa0718750:three_prime_UTR | 30.0% | |
| CAACCCCGATAAATTTATTT+GGG | + | chr5_1:13056650-13056669 | Msa0718750:three_prime_UTR | 30.0% | |
| TGTGCCCAAATAAATTTATC+GGG | - | chr5_1:13056657-13056676 | None:intergenic | 30.0% | |
| GTGTGCCCAAATAAATTTAT+CGG | - | chr5_1:13056658-13056677 | None:intergenic | 30.0% | |
| ATGAACGGTTGGATTTAGTT+CGG | - | chr5_1:13052628-13052647 | None:intergenic | 35.0% | |
| AAACAGAAGAGAGAATGCTA+CGG | - | chr5_1:13052745-13052764 | None:intergenic | 35.0% | |
| ATCTTTGGTTGTTCTTGAGT+TGG | + | chr5_1:13053071-13053090 | Msa0718750:intron | 35.0% | |
| TCTTTGGTTGTTCTTGAGTT+GGG | + | chr5_1:13053072-13053091 | Msa0718750:intron | 35.0% | |
| !! | GAGTTGGGTATAACTGATTT+TGG | + | chr5_1:13053087-13053106 | Msa0718750:intron | 35.0% |
| ATGAATGTTATTGCAGGAAG+AGG | + | chr5_1:13053305-13053324 | Msa0718750:intron | 35.0% | |
| TCATCTAAGCCTAAGAACTA+TGG | + | chr5_1:13053414-13053433 | Msa0718750:CDS | 35.0% | |
| TTATTGGCACCATAGTTCTT+AGG | - | chr5_1:13053426-13053445 | None:intergenic | 35.0% | |
| AAACCAGTTTCAATCCTTCT+CGG | - | chr5_1:13053459-13053478 | None:intergenic | 35.0% | |
| ! | ATATGATGGAAAAGTTCTGG+TGG | - | chr5_1:13053495-13053514 | None:intergenic | 35.0% |
| TCTTAAGTTTCTGTCATCTG+AGG | + | chr5_1:13053515-13053534 | Msa0718750:CDS | 35.0% | |
| AGTCAATTGCCAACTTTAGA+GGG | - | chr5_1:13053734-13053753 | None:intergenic | 35.0% | |
| AAGTCAATTGCCAACTTTAG+AGG | - | chr5_1:13053735-13053754 | None:intergenic | 35.0% | |
| CATGCTTACCAAATCATGAA+TGG | + | chr5_1:13053817-13053836 | Msa0718750:intron | 35.0% | |
| ATTGAACCTACACAAAATGG+TGG | + | chr5_1:13053935-13053954 | Msa0718750:intron | 35.0% | |
| TTGAACCTACACAAAATGGT+GGG | + | chr5_1:13053936-13053955 | Msa0718750:intron | 35.0% | |
| ! | TCTAGCACTCACTCTTTTAT+TGG | - | chr5_1:13053979-13053998 | None:intergenic | 35.0% |
| TTACTAACGACTCACTATAG+AGG | + | chr5_1:13054044-13054063 | Msa0718750:intron | 35.0% | |
| AGACTAGAAATCACATTTGG+AGG | - | chr5_1:13054083-13054102 | None:intergenic | 35.0% | |
| !!! | TATAGTTTTTTGATGGGTGC+AGG | + | chr5_1:13054210-13054229 | Msa0718750:intron | 35.0% |
| CATGGTTCACACATCTTTAA+TGG | - | chr5_1:13054564-13054583 | None:intergenic | 35.0% | |
| CATAGCAATAAGCACAAACA+TGG | - | chr5_1:13054582-13054601 | None:intergenic | 35.0% | |
| CATGTTTGTGCTTATTGCTA+TGG | + | chr5_1:13054580-13054599 | Msa0718750:intron | 35.0% | |
| TGTTCAGATATTGTATGCGA+TGG | + | chr5_1:13054610-13054629 | Msa0718750:intron | 35.0% | |
| GTTCAGATATTGTATGCGAT+GGG | + | chr5_1:13054611-13054630 | Msa0718750:intron | 35.0% | |
| TTCAGATATTGTATGCGATG+GGG | + | chr5_1:13054612-13054631 | Msa0718750:intron | 35.0% | |
| AAAGCTATACATTCAGGTAC+TGG | + | chr5_1:13054677-13054696 | Msa0718750:intron | 35.0% | |
| !!! | CTTTTTAGAGTGAACATCCA+TGG | + | chr5_1:13054742-13054761 | Msa0718750:intron | 35.0% |
| CCGCACAAATTAACAAATCA+AGG | - | chr5_1:13054887-13054906 | None:intergenic | 35.0% | |
| AAGCTGCCAAAATGAGTTTA+AGG | + | chr5_1:13054965-13054984 | Msa0718750:CDS | 35.0% | |
| TGTGAGAAACCACTGAAAAA+TGG | + | chr5_1:13055048-13055067 | Msa0718750:intron | 35.0% | |
| ! | ATCGAGATCTTTTCTGCAAT+TGG | + | chr5_1:13055087-13055106 | Msa0718750:intron | 35.0% |
| ! | TCTTTTACTTCCTCAATGTG+GGG | + | chr5_1:13055131-13055150 | Msa0718750:intron | 35.0% |
| GATACAGAGAACAACAACAT+AGG | - | chr5_1:13055257-13055276 | None:intergenic | 35.0% | |
| ! | TTTTCTGCATGTGAAGTTGA+AGG | + | chr5_1:13055341-13055360 | Msa0718750:intron | 35.0% |
| CGATGAAACTTGTAAAGAAG+TGG | + | chr5_1:13055655-13055674 | Msa0718750:CDS | 35.0% | |
| ACATTTAGACTTACAGAGTC+GGG | - | chr5_1:13055764-13055783 | None:intergenic | 35.0% | |
| GACATTTAGACTTACAGAGT+CGG | - | chr5_1:13055765-13055784 | None:intergenic | 35.0% | |
| ! | ATTATAGCTTTTCTTCCTGC+TGG | + | chr5_1:13056004-13056023 | Msa0718750:intron | 35.0% |
| TGATGAGGAAGAACCATTTA+TGG | + | chr5_1:13056074-13056093 | Msa0718750:CDS | 35.0% | |
| GATGAGGAAGAACCATTTAT+GGG | + | chr5_1:13056075-13056094 | Msa0718750:CDS | 35.0% | |
| TCGAGATGAGTTTACCAAAA+CGG | - | chr5_1:13056107-13056126 | None:intergenic | 35.0% | |
| ATTTCCATTTCAGTTTCTCC+TGG | + | chr5_1:13056359-13056378 | Msa0718750:three_prime_UTR | 35.0% | |
| CATATGCTTTATGCTAACAG+TGG | + | chr5_1:13056522-13056541 | Msa0718750:three_prime_UTR | 35.0% | |
| GTGCCCAAATAAATTTATCG+GGG | - | chr5_1:13056656-13056675 | None:intergenic | 35.0% | |
| ! | TGAACGGTTGGATTTAGTTC+GGG | - | chr5_1:13052627-13052646 | None:intergenic | 40.0% |
| TGGAAAGTGAAATGAACGGT+TGG | - | chr5_1:13052639-13052658 | None:intergenic | 40.0% | |
| TCGGTGGAAAGTGAAATGAA+CGG | - | chr5_1:13052643-13052662 | None:intergenic | 40.0% | |
| ! | TGATGAAGATGATGATTCGG+TGG | - | chr5_1:13052659-13052678 | None:intergenic | 40.0% |
| AGCTCAATTTCTCGAATCAG+AGG | + | chr5_1:13052839-13052858 | Msa0718750:CDS | 40.0% | |
| !!! | GGTATAACTGATTTTGGCTC+CGG | + | chr5_1:13053093-13053112 | Msa0718750:intron | 40.0% |
| ! | ATGCGTTTTCTCTTCGCTTT+AGG | - | chr5_1:13053345-13053364 | None:intergenic | 40.0% |
| GAAGAGAAAACGCATAGAAG+AGG | + | chr5_1:13053350-13053369 | Msa0718750:CDS | 40.0% | |
| !! | TGCGTGTTTGGAATCACTTT+TGG | + | chr5_1:13053623-13053642 | Msa0718750:intron | 40.0% |
| !! | GCGTGTTTGGAATCACTTTT+GGG | + | chr5_1:13053624-13053643 | Msa0718750:intron | 40.0% |
| !! | CGTGTTTGGAATCACTTTTG+GGG | + | chr5_1:13053625-13053644 | Msa0718750:intron | 40.0% |
| !! | GTGTTTGGAATCACTTTTGG+GGG | + | chr5_1:13053626-13053645 | Msa0718750:intron | 40.0% |
| !! | ACTTTAGAGGGGCATTATTG+TGG | - | chr5_1:13053722-13053741 | None:intergenic | 40.0% |
| !! | CAATAATGCCCCTCTAAAGT+TGG | + | chr5_1:13053722-13053741 | Msa0718750:intron | 40.0% |
| ! | GTCAATTGCCAACTTTAGAG+GGG | - | chr5_1:13053733-13053752 | None:intergenic | 40.0% |
| ! | TATGTCCCACCATTTTGTGT+AGG | - | chr5_1:13053944-13053963 | None:intergenic | 40.0% |
| CACATTTGGAGGCAACAATT+TGG | - | chr5_1:13054072-13054091 | None:intergenic | 40.0% | |
| CAACAGCTTCCACTTTAAAC+AGG | - | chr5_1:13054449-13054468 | None:intergenic | 40.0% | |
| TTTCTCTAAACCCCACATTG+AGG | - | chr5_1:13055144-13055163 | None:intergenic | 40.0% | |
| TCAATGTGGGGTTTAGAGAA+AGG | + | chr5_1:13055143-13055162 | Msa0718750:intron | 40.0% | |
| CAATGTGGGGTTTAGAGAAA+GGG | + | chr5_1:13055144-13055163 | Msa0718750:intron | 40.0% | |
| GTTTAGAGAAAGGGATAGAG+TGG | + | chr5_1:13055153-13055172 | Msa0718750:intron | 40.0% | |
| ! | TTTTGCTCCTAGAGTCATAG+TGG | + | chr5_1:13055201-13055220 | Msa0718750:intron | 40.0% |
| TGATGAGACTTGATCAGCTA+AGG | - | chr5_1:13055391-13055410 | None:intergenic | 40.0% | |
| TAGCTGATCAAGTCTCATCA+TGG | + | chr5_1:13055391-13055410 | Msa0718750:CDS | 40.0% | |
| TCTCATCATGGAAAAGTAGC+AGG | + | chr5_1:13055403-13055422 | Msa0718750:CDS | 40.0% | |
| CTCATCATGGAAAAGTAGCA+GGG | + | chr5_1:13055404-13055423 | Msa0718750:CDS | 40.0% | |
| TCATCATGGAAAAGTAGCAG+GGG | + | chr5_1:13055405-13055424 | Msa0718750:CDS | 40.0% | |
| ACATGCTCGTACTACCAAAT+TGG | + | chr5_1:13055471-13055490 | Msa0718750:CDS | 40.0% | |
| !! | ATAAGCTCTAAGCAGACCAA+AGG | - | chr5_1:13055592-13055611 | None:intergenic | 40.0% |
| ACAAACGAAAAGCTCATCCT+CGG | - | chr5_1:13055690-13055709 | None:intergenic | 40.0% | |
| GTGTGCATGTTAATCTTGTG+AGG | + | chr5_1:13055845-13055864 | Msa0718750:intron | 40.0% | |
| CAAATGAATGAGAAACCAGC+AGG | - | chr5_1:13056022-13056041 | None:intergenic | 40.0% | |
| GAAGAACCATTTATGGGATC+TGG | + | chr5_1:13056081-13056100 | Msa0718750:CDS | 40.0% | |
| TTTGGTAAACTCATCTCGAC+TGG | + | chr5_1:13056108-13056127 | Msa0718750:intron | 40.0% | |
| AGGAGCTTGAAGATACTTTG+AGG | + | chr5_1:13056252-13056271 | Msa0718750:CDS | 40.0% | |
| ACTTCCAGAAGAGCTTAATG+GGG | - | chr5_1:13056288-13056307 | None:intergenic | 40.0% | |
| CACTTCCAGAAGAGCTTAAT+GGG | - | chr5_1:13056289-13056308 | None:intergenic | 40.0% | |
| TGTTCAGTAGGCAAATGATG+AGG | - | chr5_1:13056324-13056343 | None:intergenic | 40.0% | |
| TATGCCAGGAGAAACTGAAA+TGG | - | chr5_1:13056366-13056385 | None:intergenic | 40.0% | |
| TTTCAGTTTCTCCTGGCATA+AGG | + | chr5_1:13056366-13056385 | Msa0718750:three_prime_UTR | 40.0% | |
| TAAGCAGATATCCTTATGCC+AGG | - | chr5_1:13056380-13056399 | None:intergenic | 40.0% | |
| CTTATCTCATTGAGTAGGGT+CGG | - | chr5_1:13056467-13056486 | None:intergenic | 40.0% | |
| ACGCCTTATCTCATTGAGTA+GGG | - | chr5_1:13056471-13056490 | None:intergenic | 40.0% | |
| AGCCCATACGCAACATGTTT+CGG | + | chr5_1:13052591-13052610 | Msa0718750:five_prime_UTR | 45.0% | |
| ACCCGAAACATGTTGCGTAT+GGG | - | chr5_1:13052596-13052615 | None:intergenic | 45.0% | |
| ! | ATACGCAACATGTTTCGGGT+CGG | + | chr5_1:13052596-13052615 | Msa0718750:five_prime_UTR | 45.0% |
| TCGAATGACGGTTGTGGAAT+CGG | - | chr5_1:13052712-13052731 | None:intergenic | 45.0% | |
| CACAACCGTCATTCGAATTC+CGG | + | chr5_1:13052716-13052735 | Msa0718750:five_prime_UTR | 45.0% | |
| ! | CTGAAAAGGTCATGGTGTCA+TGG | - | chr5_1:13052800-13052819 | None:intergenic | 45.0% |
| TTCGTCGTCTGAAAAGGTCA+TGG | - | chr5_1:13052808-13052827 | None:intergenic | 45.0% | |
| TTCGTCTTCGTCGTCTGAAA+AGG | - | chr5_1:13052814-13052833 | None:intergenic | 45.0% | |
| GAATACCTTGTCAGAGACCT+CGG | - | chr5_1:13052871-13052890 | None:intergenic | 45.0% | |
| GCAGGAAGAGGTAAATGTAG+AGG | + | chr5_1:13053317-13053336 | Msa0718750:intron | 45.0% | |
| CAGAGTAGCATACAGTGTTC+TGG | + | chr5_1:13053387-13053406 | Msa0718750:CDS | 45.0% | |
| TTCAATCCTTCTCGGCATCA+CGG | - | chr5_1:13053451-13053470 | None:intergenic | 45.0% | |
| ATGCCGAGAAGGATTGAAAC+TGG | + | chr5_1:13053453-13053472 | Msa0718750:CDS | 45.0% | |
| !!! | ACCTCTTTGCCCTGGTTTTA+TGG | + | chr5_1:13053540-13053559 | Msa0718750:intron | 45.0% |
| TCCATAAAACCAGGGCAAAG+AGG | - | chr5_1:13053544-13053563 | None:intergenic | 45.0% | |
| !! | TGACTTGCTATGTGCGTGTT+TGG | + | chr5_1:13053611-13053630 | Msa0718750:intron | 45.0% |
| !! | TTAGAGGGGCATTATTGTGG+AGG | - | chr5_1:13053719-13053738 | None:intergenic | 45.0% |
| TTGCTGTCTTGTGACTGTCT+TGG | + | chr5_1:13054168-13054187 | Msa0718750:intron | 45.0% | |
| !! | CTGCATCTGATGAAGCATTG+TGG | + | chr5_1:13054275-13054294 | Msa0718750:CDS | 45.0% |
| AGTGCCTGTCCTGTTTAAAG+TGG | + | chr5_1:13054437-13054456 | Msa0718750:intron | 45.0% | |
| GCTTCCACTTTAAACAGGAC+AGG | - | chr5_1:13054444-13054463 | None:intergenic | 45.0% | |
| TTGCTTGCCTCTTATCAGCT+TGG | + | chr5_1:13054466-13054485 | Msa0718750:intron | 45.0% | |
| CTCAAAGCCAAGCTGATAAG+AGG | - | chr5_1:13054476-13054495 | None:intergenic | 45.0% | |
| !! | CTCTTATCAGCTTGGCTTTG+AGG | + | chr5_1:13054474-13054493 | Msa0718750:intron | 45.0% |
| AGTCCCTTATCTTCCTTGTC+GGG | - | chr5_1:13054647-13054666 | None:intergenic | 45.0% | |
| CAGTCCCTTATCTTCCTTGT+CGG | - | chr5_1:13054648-13054667 | None:intergenic | 45.0% | |
| TAGAGTGAACATCCATGGAC+TGG | + | chr5_1:13054747-13054766 | Msa0718750:intron | 45.0% | |
| !! | ATCCATGGACTGGTGATTTG+TGG | + | chr5_1:13054757-13054776 | Msa0718750:intron | 45.0% |
| AACCACAAATCACCAGTCCA+TGG | - | chr5_1:13054762-13054781 | None:intergenic | 45.0% | |
| GCAGCGTGATGAAAATGACA+TGG | + | chr5_1:13054929-13054948 | Msa0718750:intron | 45.0% | |
| ! | ATGAGGTGCTTGACTTCTCT+TGG | - | chr5_1:13055015-13055034 | None:intergenic | 45.0% |
| GTTTCTCACACTACCTGTGA+AGG | - | chr5_1:13055038-13055057 | None:intergenic | 45.0% | |
| TGAACGACCATGCTTGTTCT+GGG | + | chr5_1:13055445-13055464 | Msa0718750:CDS | 45.0% | |
| ATGTCTTCCCAGAACAAGCA+TGG | - | chr5_1:13055455-13055474 | None:intergenic | 45.0% | |
| GAGAAGACTGGACAAGTTCA+TGG | + | chr5_1:13055510-13055529 | Msa0718750:CDS | 45.0% | |
| CAAACGAAAAGCTCATCCTC+GGG | - | chr5_1:13055689-13055708 | None:intergenic | 45.0% | |
| AAATTTCAGGAGCAGCAGCA+AGG | + | chr5_1:13056042-13056061 | Msa0718750:intron | 45.0% | |
| AAACGGCCAGATCCCATAAA+TGG | - | chr5_1:13056090-13056109 | None:intergenic | 45.0% | |
| ! | TTTATGGGATCTGGCCGTTT+TGG | + | chr5_1:13056090-13056109 | Msa0718750:CDS | 45.0% |
| GCGCTGTCAAAATTGAACAG+AGG | - | chr5_1:13056196-13056215 | None:intergenic | 45.0% | |
| TGATCCCCATTAAGCTCTTC+TGG | + | chr5_1:13056281-13056300 | Msa0718750:exon | 45.0% | |
| CCACTTCCAGAAGAGCTTAA+TGG | - | chr5_1:13056290-13056309 | None:intergenic | 45.0% | |
| ! | CCATTAAGCTCTTCTGGAAG+TGG | + | chr5_1:13056287-13056306 | Msa0718750:three_prime_UTR | 45.0% |
| GCTACATGATTGAGTAGGGT+CGG | - | chr5_1:13056445-13056464 | None:intergenic | 45.0% | |
| GTCGGCTACATGATTGAGTA+GGG | - | chr5_1:13056449-13056468 | None:intergenic | 45.0% | |
| CGACCCTACTCAATGAGATA+AGG | + | chr5_1:13056465-13056484 | Msa0718750:three_prime_UTR | 45.0% | |
| CACGCCTTATCTCATTGAGT+AGG | - | chr5_1:13056472-13056491 | None:intergenic | 45.0% | |
| GCCCATACGCAACATGTTTC+GGG | + | chr5_1:13052592-13052611 | Msa0718750:five_prime_UTR | 50.0% | |
| GACCCGAAACATGTTGCGTA+TGG | - | chr5_1:13052597-13052616 | None:intergenic | 50.0% | |
| ! | CGGTTGGATTTAGTTCGGGT+TGG | - | chr5_1:13052623-13052642 | None:intergenic | 50.0% |
| CGGGACGAAACGGTAAAAGA+TGG | - | chr5_1:13052692-13052711 | None:intergenic | 50.0% | |
| GTTGTGGAATCGGGACGAAA+CGG | - | chr5_1:13052702-13052721 | None:intergenic | 50.0% | |
| CGAATGACGGTTGTGGAATC+GGG | - | chr5_1:13052711-13052730 | None:intergenic | 50.0% | |
| CGGAATTCGAATGACGGTTG+TGG | - | chr5_1:13052718-13052737 | None:intergenic | 50.0% | |
| CAGAAGAGAGAATGCTACGG+TGG | - | chr5_1:13052742-13052761 | None:intergenic | 50.0% | |
| TCTCGGCATCACGGCATTAT+TGG | - | chr5_1:13053442-13053461 | None:intergenic | 50.0% | |
| ATAATGCCGTGATGCCGAGA+AGG | + | chr5_1:13053442-13053461 | Msa0718750:CDS | 50.0% | |
| !! | ATCAGCTTGGCTTTGAGGAG+TGG | + | chr5_1:13054479-13054498 | Msa0718750:intron | 50.0% |
| !! | TCAGCTTGGCTTTGAGGAGT+GGG | + | chr5_1:13054480-13054499 | Msa0718750:intron | 50.0% |
| TTCCCCCGACAAGGAAGATA+AGG | + | chr5_1:13054640-13054659 | Msa0718750:CDS | 50.0% | |
| TCCCCCGACAAGGAAGATAA+GGG | + | chr5_1:13054641-13054660 | Msa0718750:CDS | 50.0% | |
| TCCCTTATCTTCCTTGTCGG+GGG | - | chr5_1:13054645-13054664 | None:intergenic | 50.0% | |
| GTCCCTTATCTTCCTTGTCG+GGG | - | chr5_1:13054646-13054665 | None:intergenic | 50.0% | |
| ! | GGACTGGTGATTTGTGGTTG+AGG | + | chr5_1:13054763-13054782 | Msa0718750:intron | 50.0% |
| TCAAGCACCTCATCCTTCAC+AGG | + | chr5_1:13055022-13055041 | Msa0718750:CDS | 50.0% | |
| CACACTACCTGTGAAGGATG+AGG | - | chr5_1:13055032-13055051 | None:intergenic | 50.0% | |
| ! | CCTAGAGTCATAGTGGAACG+CGG | + | chr5_1:13055208-13055227 | Msa0718750:intron | 50.0% |
| ! | CTAGAGTCATAGTGGAACGC+GGG | + | chr5_1:13055209-13055228 | Msa0718750:intron | 50.0% |
| CGTTCACCACTGTATCACTG+AGG | - | chr5_1:13055431-13055450 | None:intergenic | 50.0% | |
| GTGAACGACCATGCTTGTTC+TGG | + | chr5_1:13055444-13055463 | Msa0718750:CDS | 50.0% | |
| AGAAGTGGTTATGGATCCCG+AGG | + | chr5_1:13055670-13055689 | Msa0718750:CDS | 50.0% | |
| ACAGCGCGAGCTTATTTGCT+GGG | + | chr5_1:13056209-13056228 | Msa0718750:intron | 50.0% | |
| GGTCGGCTACATGATTGAGT+AGG | - | chr5_1:13056450-13056469 | None:intergenic | 50.0% | |
| GGTGGCCGGAATTCGAATGA+CGG | - | chr5_1:13052724-13052743 | None:intergenic | 55.0% | |
| AGAGAGAATGCTACGGTGGC+CGG | - | chr5_1:13052738-13052757 | None:intergenic | 55.0% | |
| CTGAGGTTACCTCTTTGCCC+TGG | + | chr5_1:13053532-13053551 | Msa0718750:intron | 55.0% | |
| TCTTCCTTGTCGGGGGAAGA+AGG | - | chr5_1:13054638-13054657 | None:intergenic | 55.0% | |
| GGAAGATAAGGGACTGCCCA+TGG | + | chr5_1:13054652-13054671 | Msa0718750:CDS | 55.0% | |
| CCGCGTTCCACTATGACTCT+AGG | - | chr5_1:13055211-13055230 | None:intergenic | 55.0% | |
| ! | TCATAGTGGAACGCGGGCTT+GGG | + | chr5_1:13055215-13055234 | Msa0718750:intron | 55.0% |
| GAGTCGGGCTCCATTTCAGA+TGG | - | chr5_1:13055749-13055768 | None:intergenic | 55.0% | |
| !! | GCAAGGTGTTGCAGCTGATG+AGG | + | chr5_1:13056059-13056078 | Msa0718750:CDS | 55.0% |
| GACAGCGCGAGCTTATTTGC+TGG | + | chr5_1:13056208-13056227 | Msa0718750:intron | 55.0% | |
| CGAATCAGAGGTCCTCTCCG+AGG | + | chr5_1:13052851-13052870 | Msa0718750:CDS | 60.0% | |
| CCTTGTCAGAGACCTCGGAG+AGG | - | chr5_1:13052866-13052885 | None:intergenic | 60.0% | |
| CCTCTCCGAGGTCTCTGACA+AGG | + | chr5_1:13052863-13052882 | Msa0718750:CDS | 60.0% | |
| ! | GTCATAGTGGAACGCGGGCT+TGG | + | chr5_1:13055214-13055233 | Msa0718750:intron | 60.0% |
| CAGGGGCCTCAGTGATACAG+TGG | + | chr5_1:13055422-13055441 | Msa0718750:CDS | 60.0% | |
| GGGGCCTTCTTCCCCCGACA+AGG | + | chr5_1:13054631-13054650 | Msa0718750:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 13052582 | 13056805 | 13052582 | ID=Msa0718750;Name=Msa0718750 |
| chr5_1 | mRNA | 13052582 | 13056805 | 13052582 | ID=Msa0718750-mRNA-1;Parent=Msa0718750;Name=Msa0718750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=225|1|1|1|1|1|9|522|326 |
| chr5_1 | exon | 13052582 | 13052884 | 13052582 | ID=Msa0718750-mRNA-1:exon:5321;Parent=Msa0718750-mRNA-1 |
| chr5_1 | exon | 13053321 | 13053536 | 13053321 | ID=Msa0718750-mRNA-1:exon:5322;Parent=Msa0718750-mRNA-1 |
| chr5_1 | exon | 13054232 | 13054305 | 13054232 | ID=Msa0718750-mRNA-1:exon:5323;Parent=Msa0718750-mRNA-1 |
| chr5_1 | exon | 13054617 | 13054692 | 13054617 | ID=Msa0718750-mRNA-1:exon:5324;Parent=Msa0718750-mRNA-1 |
| chr5_1 | exon | 13054933 | 13055043 | 13054933 | ID=Msa0718750-mRNA-1:exon:5325;Parent=Msa0718750-mRNA-1 |
| chr5_1 | exon | 13055357 | 13055531 | 13055357 | ID=Msa0718750-mRNA-1:exon:5326;Parent=Msa0718750-mRNA-1 |
| chr5_1 | exon | 13055651 | 13055769 | 13055651 | ID=Msa0718750-mRNA-1:exon:5327;Parent=Msa0718750-mRNA-1 |
| chr5_1 | exon | 13056051 | 13056111 | 13056051 | ID=Msa0718750-mRNA-1:exon:5328;Parent=Msa0718750-mRNA-1 |
| chr5_1 | exon | 13056213 | 13056805 | 13056213 | ID=Msa0718750-mRNA-1:exon:5329;Parent=Msa0718750-mRNA-1 |
| chr5_1 | five_prime_UTR | 13052582 | 13052806 | 13052582 | ID=Msa0718750-mRNA-1:five_prime_utr;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13052807 | 13052884 | 13052807 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13053321 | 13053536 | 13053321 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13054232 | 13054305 | 13054232 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13054617 | 13054692 | 13054617 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13054933 | 13055043 | 13054933 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13055357 | 13055531 | 13055357 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13055651 | 13055769 | 13055651 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13056051 | 13056111 | 13056051 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | CDS | 13056213 | 13056283 | 13056213 | ID=Msa0718750-mRNA-1:cds;Parent=Msa0718750-mRNA-1 |
| chr5_1 | three_prime_UTR | 13056284 | 13056805 | 13056284 | ID=Msa0718750-mRNA-1:three_prime_utr;Parent=Msa0718750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
